AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072568


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072568.t1 MTR_7g111880 96.000 250 9 1 1 249 1 250 3.30e-172 474
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072568.t1 AT4G15510 64.659 249 76 5 10 247 40 287 4.09e-105 306
MS.gene072568.t1 AT4G15510 73.039 204 52 2 46 247 3 205 2.02e-103 298
MS.gene072568.t1 AT4G15510 73.039 204 52 2 46 247 3 205 2.02e-103 298
MS.gene072568.t1 AT4G15510 73.039 204 52 2 46 247 3 205 2.02e-103 298
MS.gene072568.t1 AT4G15510 69.595 148 40 3 35 178 72 218 1.67e-62 196

Find 0 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTTGATGAAAATATAT+CGG + 51768:31159-31178 MS.gene072568:CDS 15.0%
!!! ATATTTTCATCAAGAATATA+AGG - 51768:31157-31176 None:intergenic 15.0%
!! AAATAAAATAATTGTGACAG+AGG - 51768:30885-30904 None:intergenic 20.0%
!! TACATTTATCAGAAAAATTG+TGG + 51768:31386-31405 MS.gene072568:intron 20.0%
! GAATATGTTGATACATTTGA+TGG + 51768:31061-31080 MS.gene072568:CDS 25.0%
AAAACTTACGGTAATTTGAG+GGG + 51768:31434-31453 MS.gene072568:intron 30.0%
AGAAAATGTGTTTCAAGAAG+AGG + 51768:31703-31722 MS.gene072568:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG + 51768:31433-31452 MS.gene072568:intron 30.0%
CATTCAACTATCCATCAAAT+TGG + 51768:31089-31108 MS.gene072568:CDS 30.0%
CTTACTTGAATCCAATTTGA+TGG - 51768:31103-31122 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG + 51768:31103-31122 MS.gene072568:CDS 30.0%
! CAAATTGTACTATCAAGTTG+AGG + 51768:31357-31376 MS.gene072568:CDS 30.0%
! TCTTCTTGAAACACATTTTC+TGG - 51768:31704-31723 None:intergenic 30.0%
!! AATGACATTGCTTTTCTTCT+AGG - 51768:30974-30993 None:intergenic 30.0%
ATGGATGGAATTTACCGAAT+TGG - 51768:30848-30867 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG + 51768:31210-31229 MS.gene072568:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG + 51768:31422-31441 MS.gene072568:intron 35.0%
GCAAAACTTACGGTAATTTG+AGG + 51768:31432-31451 MS.gene072568:intron 35.0%
GTAATCTCAACTCATACAGT+TGG - 51768:31676-31695 None:intergenic 35.0%
GTCTTGAATTTCGAAGAAGA+AGG - 51768:31199-31218 None:intergenic 35.0%
TGGATGGAATTTACCGAATT+GGG - 51768:30847-30866 None:intergenic 35.0%
TTACTGAGTTTATGTCCACT+AGG + 51768:31275-31294 MS.gene072568:CDS 35.0%
TTCAAGACTGTTCAAGACTT+GGG + 51768:31211-31230 MS.gene072568:CDS 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG + 51768:31129-31148 MS.gene072568:CDS 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG + 51768:31448-31467 MS.gene072568:intron 35.0%
ACATATTCACGAAACACACG+AGG - 51768:31049-31068 None:intergenic 40.0%
ACCCGTTGTTGTGATTGTAT+TGG - 51768:30761-30780 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG + 51768:31004-31023 MS.gene072568:CDS 40.0%
AGAGGAGAAAGCTCATGAAA+TGG - 51768:30867-30886 None:intergenic 40.0%
ATGGAAGTGAAATGGTGACA+TGG - 51768:30797-30816 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG - 51768:30841-30860 None:intergenic 40.0%
GAGAAAGCTCATGAAATGGA+TGG - 51768:30863-30882 None:intergenic 40.0%
GCCAATACAATCACAACAAC+GGG + 51768:30757-30776 MS.gene072568:CDS 40.0%
GGCCAATACAATCACAACAA+CGG + 51768:30756-30775 MS.gene072568:CDS 40.0%
TGCTAATGCTGTACCAATGT+CGG - 51768:31020-31039 None:intergenic 40.0%
TGCTGTTATGCCACAAGATA+GGG + 51768:31595-31614 MS.gene072568:CDS 40.0%
TGGAAGTGAAATGGTGACAT+GGG - 51768:30796-30815 None:intergenic 40.0%
TTTCAACTCCTAGAACAGAC+AGG - 51768:31649-31668 None:intergenic 40.0%
! TTGCTGTTATGCCACAAGAT+AGG + 51768:31594-31613 MS.gene072568:CDS 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG + 51768:31538-31557 MS.gene072568:intron 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG + 51768:31128-31147 MS.gene072568:CDS 40.0%
ACGTTTAACACCAAGCCTAG+TGG - 51768:31293-31312 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG - 51768:30792-30811 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG - 51768:31335-31354 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG + 51768:30831-30850 MS.gene072568:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG + 51768:31727-31746 MS.gene072568:CDS 45.0%
GAGTTTATGTCCACTAGGCT+TGG + 51768:31280-31299 MS.gene072568:CDS 45.0%
GGAATTTACCGAATTGGGTG+TGG - 51768:30842-30861 None:intergenic 45.0%
GGCTTCGTTTCGAGCAAATA+AGG + 51768:31748-31767 MS.gene072568:CDS 45.0%
TCTGAGAGAGTTGCTGATGA+TGG + 51768:31334-31353 MS.gene072568:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG + 51768:31598-31617 MS.gene072568:CDS 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG + 51768:31109-31128 MS.gene072568:CDS 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG - 51768:31241-31260 None:intergenic 45.0%
AAACGCACCACCCTATCTTG+TGG - 51768:31608-31627 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG + 51768:31607-31626 MS.gene072568:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG + 51768:31612-31631 MS.gene072568:CDS 50.0%
ATCAGCAACTCTCTCAGAGG+TGG - 51768:31332-31351 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG - 51768:30833-30852 None:intergenic 50.0%
CGAGGGGAATGGAAGTGAAA+TGG - 51768:30805-30824 None:intergenic 50.0%
GTGAAATGGTGACATGGGTC+GGG - 51768:30791-30810 None:intergenic 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG + 51768:31613-31632 MS.gene072568:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG + 51768:31621-31640 MS.gene072568:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG + 51768:31618-31637 MS.gene072568:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG + 51768:31638-31657 MS.gene072568:CDS 50.0%
AAATGGAGCAGCGAGGGGAA+TGG - 51768:30816-30835 None:intergenic 55.0%
TGGGAGAAATGGAGCAGCGA+GGG - 51768:30822-30841 None:intergenic 55.0%
TGGGTTCGCCTCAACAAGCT+GGG + 51768:31230-31249 MS.gene072568:CDS 55.0%
TTGGGTTCGCCTCAACAAGC+TGG + 51768:31229-31248 MS.gene072568:CDS 55.0%
GGGAGAAATGGAGCAGCGAG+GGG - 51768:30821-30840 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG - 51768:30823-30842 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
51768 gene 30754 31781 30754 ID=MS.gene072568
51768 mRNA 30754 31781 30754 ID=MS.gene072568.t1;Parent=MS.gene072568
51768 exon 30754 30852 30754 ID=MS.gene072568.t1.exon1;Parent=MS.gene072568.t1
51768 CDS 30754 30852 30754 ID=cds.MS.gene072568.t1;Parent=MS.gene072568.t1
51768 exon 30950 31378 30950 ID=MS.gene072568.t1.exon2;Parent=MS.gene072568.t1
51768 CDS 30950 31378 30950 ID=cds.MS.gene072568.t1;Parent=MS.gene072568.t1
51768 exon 31560 31781 31560 ID=MS.gene072568.t1.exon3;Parent=MS.gene072568.t1
51768 CDS 31560 31781 31560 ID=cds.MS.gene072568.t1;Parent=MS.gene072568.t1
Gene Sequence

>MS.gene072568

ATGGCCAATACAATCACAACAACGGGTTTTCTAGCCCGACCCATGTCACCATTTCACTTCCATTCCCCTCGCTGCTCCATTTCTCCCACACCCAATTCGGTAAATTCCATCCATTTCATGAGCTTTCTCCTCTGTCACAATTATTTTATTTTATTTACTAAATCTTTGATTTTTGTCTCTGCTAATATATAATCAGATTAAAGCAGCTTTTGCAGTTCCTAGAAGAAAAGCAATGTCATTAATCTTATCAACTTACATTCTCTCCGACATTGGTACAGCATTAGCACAACAACCTCGTGTGTTTCGTGAATATGTTGATACATTTGATGGTTATTCATTCAACTATCCATCAAATTGGATTCAAGTAAGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAAAATATATCGGTCGAAGTTTCTTCGCCTTCTTCTTCGAAATTCAAGACTGTTCAAGACTTGGGTTCGCCTCAACAAGCTGGGAAGAAAGTTCTTGATCAGTATCTTACTGAGTTTATGTCCACTAGGCTTGGTGTTAAACGTGAATCTAATATTCTTTCCACCTCTGAGAGAGTTGCTGATGATGGCAAATTGTACTATCAAGTTGAGGTTCGTTTACATTTATCAGAAAAATTGTGGTTAATCACGTTAACTCTGTTCTTGCAAAACTTACGGTAATTTGAGGGGTGTCTTTTATATGGTAATGAAATCATACATTGTAGTCTAGCGCTACTTGTTGCAAAATGACATTAAATGATTGATTGATTGTGTGTGTTGTTTGTGTTGCTAGGCGAACATTAAGTCATATGCTAGTAACAACGAGCTTGCTGTTATGCCACAAGATAGGGTGGTGCGTTTGGAATGGGATAGGAGGTACCTGTCTGTTCTAGGAGTTGAAAACAACCAACTGTATGAGTTGAGATTACAAGTGCCAGAAAATGTGTTTCAAGAAGAGGAGAGTGAACTTCGTCAAGTCATGGCTTCGTTTCGAGCAAATAAGGTTGTTCGTTAG

Protein sequence

>MS.gene072568.t1

MANTITTTGFLARPMSPFHFHSPRCSISPTPNSIKAAFAVPRRKAMSLILSTYILSDIGTALAQQPRVFREYVDTFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVQDLGSPQQAGKKVLDQYLTEFMSTRLGVKRESNILSTSERVADDGKLYYQVEANIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFQEEESELRQVMASFRANKVVR