Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96838.t1 | GAU38796.1 | 85.8 | 134 | 11 | 2 | 1 | 126 | 1 | 134 | 8.50E-54 | 219.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96838.t1 | A0A2Z6N4K6 | 85.8 | 134 | 11 | 2 | 1 | 126 | 1 | 134 | 6.2e-54 | 219.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene96838 | 0.827565 | 1.46E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene96838 | 0.832559 | 8.82E-56 | -1.69E-46 |
| MS.gene049614 | MS.gene96838 | 0.867684 | 1.14E-65 | -1.69E-46 |
| MS.gene049661 | MS.gene96838 | 0.846219 | 2.49E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene96838 | 0.83463 | 2.68E-56 | -1.69E-46 |
| MS.gene049760 | MS.gene96838 | 0.836473 | 9.17E-57 | -1.69E-46 |
| MS.gene049828 | MS.gene96838 | 0.813173 | 2.93E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene96838 | 0.90468 | 9.53E-80 | -1.69E-46 |
| MS.gene050163 | MS.gene96838 | 0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene96838 | 0.819547 | 1.10E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene96838 | 0.82213 | 2.79E-53 | -1.69E-46 |
| MS.gene050404 | MS.gene96838 | 0.827349 | 1.64E-54 | -1.69E-46 |
| MS.gene050406 | MS.gene96838 | 0.804808 | 1.81E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene96838 | 0.883048 | 6.24E-71 | -1.69E-46 |
| MS.gene05053 | MS.gene96838 | 0.803469 | 3.43E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene96838 | 0.906033 | 2.29E-80 | -1.69E-46 |
| MS.gene050770 | MS.gene96838 | 0.909376 | 6.10E-82 | -1.69E-46 |
| MS.gene05100 | MS.gene96838 | 0.803438 | 3.49E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene96838 | 0.880747 | 4.25E-70 | -1.69E-46 |
| MS.gene051228 | MS.gene96838 | 0.881257 | 2.79E-70 | -1.69E-46 |
| MS.gene051471 | MS.gene96838 | 0.85335 | 2.53E-61 | -1.69E-46 |
| MS.gene051810 | MS.gene96838 | 0.82398 | 1.03E-53 | -1.69E-46 |
| MS.gene051877 | MS.gene96838 | 0.807435 | 5.06E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene96838 | 0.863405 | 2.55E-64 | -1.69E-46 |
| MS.gene052178 | MS.gene96838 | 0.815473 | 9.08E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene96838 | 0.849755 | 2.64E-60 | -1.69E-46 |
| MS.gene052287 | MS.gene96838 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene96838 | 0.916088 | 2.71E-85 | -1.69E-46 |
| MS.gene052293 | MS.gene96838 | 0.81814 | 2.29E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene96838 | 0.817873 | 2.63E-52 | -1.69E-46 |
| MS.gene052326 | MS.gene96838 | 0.870878 | 1.05E-66 | -1.69E-46 |
| MS.gene052379 | MS.gene96838 | 0.846355 | 2.29E-59 | -1.69E-46 |
| MS.gene053009 | MS.gene96838 | 0.856428 | 3.24E-62 | -1.69E-46 |
| MS.gene053103 | MS.gene96838 | 0.828755 | 7.54E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene96838 | 0.828641 | 8.03E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene96838 | 0.844345 | 8.01E-59 | -1.69E-46 |
| MS.gene053322 | MS.gene96838 | 0.878499 | 2.67E-69 | -1.69E-46 |
| MS.gene053384 | MS.gene96838 | 0.807814 | 4.20E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene96838 | 0.803144 | 4.01E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene96838 | 0.80173 | 7.85E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene96838 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene96838 | 0.906023 | 2.31E-80 | -1.69E-46 |
| MS.gene054642 | MS.gene96838 | 0.815697 | 8.10E-52 | -1.69E-46 |
| MS.gene054802 | MS.gene96838 | 0.888614 | 5.05E-73 | -1.69E-46 |
| MS.gene054803 | MS.gene96838 | 0.887918 | 9.35E-73 | -1.69E-46 |
| MS.gene054804 | MS.gene96838 | 0.892881 | 1.05E-74 | -1.69E-46 |
| MS.gene055212 | MS.gene96838 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene055254 | MS.gene96838 | 0.969241 | 7.81E-130 | -1.69E-46 |
| MS.gene055277 | MS.gene96838 | 0.864458 | 1.20E-64 | -1.69E-46 |
| MS.gene055390 | MS.gene96838 | 0.814165 | 1.77E-51 | -1.69E-46 |
| MS.gene055397 | MS.gene96838 | 0.895487 | 9.15E-76 | -1.69E-46 |
| MS.gene055422 | MS.gene96838 | 0.82525 | 5.19E-54 | -1.69E-46 |
| MS.gene055428 | MS.gene96838 | 0.819491 | 1.13E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene96838 | -0.850271 | 1.89E-60 | -1.69E-46 |
| MS.gene055499 | MS.gene96838 | 0.901882 | 1.71E-78 | -1.69E-46 |
| MS.gene055647 | MS.gene96838 | 0.805557 | 1.26E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene96838 | 0.800916 | 1.15E-48 | -1.69E-46 |
| MS.gene055896 | MS.gene96838 | 0.860666 | 1.76E-63 | -1.69E-46 |
| MS.gene05592 | MS.gene96838 | 0.853671 | 2.05E-61 | -1.69E-46 |
| MS.gene056191 | MS.gene96838 | 0.801897 | 7.25E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene96838 | 0.810801 | 9.62E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene96838 | 0.825645 | 4.19E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene96838 | 0.873689 | 1.21E-67 | -1.69E-46 |
| MS.gene056612 | MS.gene96838 | 0.82215 | 2.76E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene96838 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene96838 | 0.81733 | 3.49E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene96838 | 0.829388 | 5.29E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene96838 | 0.901753 | 1.95E-78 | -1.69E-46 |
| MS.gene057146 | MS.gene96838 | 0.811752 | 5.98E-51 | -1.69E-46 |
| MS.gene057246 | MS.gene96838 | 0.846904 | 1.62E-59 | -1.69E-46 |
| MS.gene057295 | MS.gene96838 | 0.878847 | 2.02E-69 | -1.69E-46 |
| MS.gene05733 | MS.gene96838 | 0.820774 | 5.74E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene96838 | 0.829669 | 4.52E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene96838 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene058293 | MS.gene96838 | 0.841928 | 3.53E-58 | -1.69E-46 |
| MS.gene058323 | MS.gene96838 | 0.80421 | 2.41E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene96838 | 0.866669 | 2.41E-65 | -1.69E-46 |
| MS.gene058723 | MS.gene96838 | 0.824805 | 6.61E-54 | -1.69E-46 |
| MS.gene058787 | MS.gene96838 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene96838 | 0.811018 | 8.64E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene96838 | 0.819162 | 1.34E-52 | -1.69E-46 |
| MS.gene059228 | MS.gene96838 | 0.808348 | 3.24E-50 | -1.69E-46 |
| MS.gene059326 | MS.gene96838 | 0.851957 | 6.33E-61 | -1.69E-46 |
| MS.gene059536 | MS.gene96838 | 0.840718 | 7.34E-58 | -1.69E-46 |
| MS.gene059597 | MS.gene96838 | 0.825684 | 4.10E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene96838 | 0.82062 | 6.23E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene96838 | 0.839572 | 1.46E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene96838 | 0.83283 | 7.56E-56 | -1.69E-46 |
| MS.gene059708 | MS.gene96838 | 0.817906 | 2.59E-52 | -1.69E-46 |
| MS.gene059858 | MS.gene96838 | 0.848837 | 4.75E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene96838 | 0.850418 | 1.72E-60 | -1.69E-46 |
| MS.gene059960 | MS.gene96838 | 0.878834 | 2.04E-69 | -1.69E-46 |
| MS.gene059974 | MS.gene96838 | 0.803703 | 3.07E-49 | -1.69E-46 |
| MS.gene060005 | MS.gene96838 | 0.825753 | 3.95E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene96838 | 0.847571 | 1.06E-59 | -1.69E-46 |
| MS.gene060804 | MS.gene96838 | 0.83989 | 1.21E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene96838 | 0.844171 | 8.92E-59 | -1.69E-46 |
| MS.gene061041 | MS.gene96838 | 0.842545 | 2.42E-58 | -1.69E-46 |
| MS.gene061049 | MS.gene96838 | 0.825657 | 4.16E-54 | -1.69E-46 |
| MS.gene061051 | MS.gene96838 | -0.821318 | 4.30E-53 | -1.69E-46 |
| MS.gene061112 | MS.gene96838 | 0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene96838 | 0.86956 | 2.82E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96838.t1 | MTR_7g062470 | 91.603 | 131 | 6 | 1 | 1 | 126 | 1 | 131 | 4.82e-70 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96838.t1 | AT5G02160 | 84.810 | 79 | 12 | 0 | 48 | 126 | 50 | 128 | 3.23e-46 | 146 |
Find 28 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACACTAAACTCTTATT+TGG | 0.131404 | 7.3:+42659719 | MS.gene96838:CDS |
| TATCTTGTTGCTGGTGCTAT+TGG | 0.295597 | 7.3:+42659839 | MS.gene96838:CDS |
| GGCACTATTTATCTTGTTGC+TGG | 0.299445 | 7.3:+42659830 | MS.gene96838:CDS |
| GTGATGGAGCAGGGTTTGTT+AGG | 0.314720 | 7.3:+42661193 | MS.gene96838:CDS |
| AAATAAGAGTTTAGTGTTGT+TGG | 0.324277 | 7.3:-42659717 | None:intergenic |
| GCTATTGGAATTGCTCTTGT+TGG | 0.368974 | 7.3:+42659854 | MS.gene96838:CDS |
| TTGTGCTCGTTGTGATGGTT+TGG | 0.405035 | 7.3:+42661272 | MS.gene96838:CDS |
| AGCATTTCTATTTGTCAACT+TGG | 0.409660 | 7.3:-42661305 | None:intergenic |
| AACCCTGCTCCATCACAATC+AGG | 0.417979 | 7.3:-42661186 | None:intergenic |
| ATTGGGAATGATTGTGTTCA+AGG | 0.420585 | 7.3:-42659684 | None:intergenic |
| TCAGTTGTTGTTTCAGCAGT+TGG | 0.426749 | 7.3:+42659791 | MS.gene96838:CDS |
| TGTGCTCGTTGTGATGGTTT+GGG | 0.434742 | 7.3:+42661273 | MS.gene96838:CDS |
| AACACTAAACTCTTATTTGG+AGG | 0.444395 | 7.3:+42659722 | MS.gene96838:CDS |
| TCTTTACGTGAGAAGATGAT+AGG | 0.453999 | 7.3:-42659887 | None:intergenic |
| CAGGGTTTGTTAGGAAAGGT+GGG | 0.459410 | 7.3:+42661202 | MS.gene96838:CDS |
| GCAGGGTTTGTTAGGAAAGG+TGG | 0.460825 | 7.3:+42661201 | MS.gene96838:CDS |
| GAGAGCAAATGCAGCAAGAA+AGG | 0.478276 | 7.3:+42661233 | MS.gene96838:CDS |
| GTTGTTGGAAATTGTAACAT+TGG | 0.483393 | 7.3:-42659702 | None:intergenic |
| TGCCCTGATTGTGATGGAGC+AGG | 0.517909 | 7.3:+42661183 | MS.gene96838:CDS |
| TTGTTGGAAATTGTAACATT+GGG | 0.522805 | 7.3:-42659701 | None:intergenic |
| ATTGTTTGTGCTCGTTGTGA+TGG | 0.530028 | 7.3:+42661267 | MS.gene96838:CDS |
| GGAGCAGGGTTTGTTAGGAA+AGG | 0.545979 | 7.3:+42661198 | MS.gene96838:CDS |
| AATGATTGTGTTCAAGGTCA+TGG | 0.560862 | 7.3:-42659678 | None:intergenic |
| GTTGGAGATGTATCTTCTGA+TGG | 0.593310 | 7.3:+42659809 | MS.gene96838:CDS |
| ACCCTGCTCCATCACAATCA+GGG | 0.608104 | 7.3:-42661185 | None:intergenic |
| GCCCTGATTGTGATGGAGCA+GGG | 0.608764 | 7.3:+42661184 | MS.gene96838:CDS |
| ATCAGATGCCCTGATTGTGA+TGG | 0.647435 | 7.3:+42661177 | MS.gene96838:intron |
| AGGGTTTGTTAGGAAAGGTG+GGG | 0.670666 | 7.3:+42661203 | MS.gene96838:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATAAATATTTATAT+TGG | - | chr7.3:42660547-42660566 | None:intergenic | 0.0% |
| !! | AAATTATAAATATTTATATT+GGG | - | chr7.3:42660546-42660565 | None:intergenic | 0.0% |
| !! | TAAAAAATAAAATCTGATTT+CGG | + | chr7.3:42660370-42660389 | MS.gene96838:intron | 10.0% |
| !! | AATAATAATCTCAATAATAG+TGG | + | chr7.3:42660571-42660590 | MS.gene96838:intron | 15.0% |
| !!! | TAATTATAAACCTATTTTTG+TGG | + | chr7.3:42660974-42660993 | MS.gene96838:intron | 15.0% |
| !! | AATCTTAAAACCACAAAAAT+AGG | - | chr7.3:42660987-42661006 | None:intergenic | 20.0% |
| !! | GATAATGCATAATATATGTA+AGG | + | chr7.3:42660465-42660484 | MS.gene96838:intron | 20.0% |
| !!! | AAATTTTGTATAGGCATTTT+TGG | + | chr7.3:42660101-42660120 | MS.gene96838:intron | 20.0% |
| !!! | TTCTAAGAGAAATTTTGTAT+AGG | + | chr7.3:42660092-42660111 | MS.gene96838:intron | 20.0% |
| !!! | TTTTTTCATTGATTCTTGTT+TGG | + | chr7.3:42661076-42661095 | MS.gene96838:intron | 20.0% |
| ! | AAATAAGAGTTTAGTGTTGT+TGG | - | chr7.3:42659720-42659739 | None:intergenic | 25.0% |
| ! | AACAACACTAAACTCTTATT+TGG | + | chr7.3:42659719-42659738 | MS.gene96838:CDS | 25.0% |
| ! | ACATCATTAACAAACAACAA+AGG | - | chr7.3:42661140-42661159 | None:intergenic | 25.0% |
| ! | GGTAAAACTATACTTATCTA+TGG | - | chr7.3:42660304-42660323 | None:intergenic | 25.0% |
| ! | TGCACTTGAAATAAAAATCT+AGG | - | chr7.3:42661052-42661071 | None:intergenic | 25.0% |
| ! | TTGTTGGAAATTGTAACATT+GGG | - | chr7.3:42659704-42659723 | None:intergenic | 25.0% |
| !! | ATTCTGAGAAAATTAGAGAT+AGG | - | chr7.3:42660188-42660207 | None:intergenic | 25.0% |
| !!! | AAGAGAATTGTTTTTTTTCG+TGG | - | chr7.3:42660513-42660532 | None:intergenic | 25.0% |
| !!! | ACCTAGTTTTTTAATCTACT+TGG | + | chr7.3:42661015-42661034 | MS.gene96838:intron | 25.0% |
| !!! | CATCGTTATTTTCATTTTCA+TGG | + | chr7.3:42659924-42659943 | MS.gene96838:intron | 25.0% |
| !!! | CCTAGTTTTTTAATCTACTT+GGG | + | chr7.3:42661016-42661035 | MS.gene96838:intron | 25.0% |
| !!! | TAAGTATAGTTTTACCTTGA+CGG | + | chr7.3:42660308-42660327 | MS.gene96838:intron | 25.0% |
| CCCAAGTAGATTAAAAAACT+AGG | - | chr7.3:42661019-42661038 | None:intergenic | 30.0% | |
| GTTGTTGGAAATTGTAACAT+TGG | - | chr7.3:42659705-42659724 | None:intergenic | 30.0% | |
| TCAATAAAAAACATCCGTCA+AGG | - | chr7.3:42660325-42660344 | None:intergenic | 30.0% | |
| TCAATAATAGTGGTTGAAAC+TGG | + | chr7.3:42660581-42660600 | MS.gene96838:intron | 30.0% | |
| TGAACAAATTACACTTGCAA+TGG | + | chr7.3:42660034-42660053 | MS.gene96838:intron | 30.0% | |
| TGATAATTGGCAATGATGAT+TGG | + | chr7.3:42660674-42660693 | MS.gene96838:intron | 30.0% | |
| TGCATAATATATGTAAGGTC+CGG | + | chr7.3:42660470-42660489 | MS.gene96838:intron | 30.0% | |
| ! | AACACTAAACTCTTATTTGG+AGG | + | chr7.3:42659722-42659741 | MS.gene96838:CDS | 30.0% |
| !! | TCATTGATTCTTGTTTGGAA+TGG | + | chr7.3:42661081-42661100 | MS.gene96838:intron | 30.0% |
| !!! | GTGGTCATAGTAGTTTTAAA+TGG | + | chr7.3:42660766-42660785 | MS.gene96838:intron | 30.0% |
| AATGATTGTGTTCAAGGTCA+TGG | - | chr7.3:42659681-42659700 | None:intergenic | 35.0% | |
| ACAATGATCGGAGTGATAAT+TGG | + | chr7.3:42660661-42660680 | MS.gene96838:intron | 35.0% | |
| ATCTAAGAAAGTTGGAGTGA+TGG | + | chr7.3:42660852-42660871 | MS.gene96838:intron | 35.0% | |
| ATTGGGAATGATTGTGTTCA+AGG | - | chr7.3:42659687-42659706 | None:intergenic | 35.0% | |
| CATAATATATGTAAGGTCCG+GGG | + | chr7.3:42660472-42660491 | MS.gene96838:intron | 35.0% | |
| GCATAATATATGTAAGGTCC+GGG | + | chr7.3:42660471-42660490 | MS.gene96838:intron | 35.0% | |
| TAATTGGCAATGATGATTGG+CGG | + | chr7.3:42660677-42660696 | MS.gene96838:intron | 35.0% | |
| TAGAGGTGATCTAAGAAAGT+TGG | + | chr7.3:42660844-42660863 | MS.gene96838:intron | 35.0% | |
| TCTTTACGTGAGAAGATGAT+AGG | - | chr7.3:42659890-42659909 | None:intergenic | 35.0% | |
| TTGAACTTTGCTCAGTTGAT+AGG | + | chr7.3:42660442-42660461 | MS.gene96838:intron | 35.0% | |
| ! | TGAACTTTGCTCAGTTGATA+GGG | + | chr7.3:42660443-42660462 | MS.gene96838:intron | 35.0% |
| ! | TTGAAACTGGTTGTTGTTAG+AGG | + | chr7.3:42660594-42660613 | MS.gene96838:intron | 35.0% |
| !! | GTTTTAAATGGTGATCACAG+TGG | + | chr7.3:42660778-42660797 | MS.gene96838:intron | 35.0% |
| AACGTTTCATGTTACCACCA+AGG | - | chr7.3:42660941-42660960 | None:intergenic | 40.0% | |
| ACGATCAGAATGATGATTGG+TGG | + | chr7.3:42660713-42660732 | MS.gene96838:intron | 40.0% | |
| AGTGGTGATCAGAGTATATG+TGG | + | chr7.3:42660796-42660815 | MS.gene96838:intron | 40.0% | |
| ATTGTTTGTGCTCGTTGTGA+TGG | + | chr7.3:42661267-42661286 | MS.gene96838:CDS | 40.0% | |
| CAAACAGTGGCTACAATGAT+CGG | + | chr7.3:42660649-42660668 | MS.gene96838:intron | 40.0% | |
| GCAACGATCAGAATGATGAT+TGG | + | chr7.3:42660710-42660729 | MS.gene96838:intron | 40.0% | |
| GCTATTGGAATTGCTCTTGT+TGG | + | chr7.3:42659854-42659873 | MS.gene96838:CDS | 40.0% | |
| GGCACTATTTATCTTGTTGC+TGG | + | chr7.3:42659830-42659849 | MS.gene96838:CDS | 40.0% | |
| GTTGGAGATGTATCTTCTGA+TGG | + | chr7.3:42659809-42659828 | MS.gene96838:CDS | 40.0% | |
| ! | AAACTGGTTGTTGTTAGAGG+AGG | + | chr7.3:42660597-42660616 | MS.gene96838:intron | 40.0% |
| ! | AGAATGATGATTGGTGGACA+AGG | + | chr7.3:42660719-42660738 | MS.gene96838:intron | 40.0% |
| ! | GAATGATGATTGGTGGACAA+GGG | + | chr7.3:42660720-42660739 | MS.gene96838:intron | 40.0% |
| !! | GAGTATATGTGGTGTCATAG+TGG | + | chr7.3:42660807-42660826 | MS.gene96838:intron | 40.0% |
| !! | TATATGTGGTGTCATAGTGG+TGG | + | chr7.3:42660810-42660829 | MS.gene96838:intron | 40.0% |
| !! | TATCTTGTTGCTGGTGCTAT+TGG | + | chr7.3:42659839-42659858 | MS.gene96838:CDS | 40.0% |
| !! | TCAGTTGTTGTTTCAGCAGT+TGG | + | chr7.3:42659791-42659810 | MS.gene96838:CDS | 40.0% |
| !!! | GTTTTTTTTCGTGGTAGCCA+AGG | - | chr7.3:42660504-42660523 | None:intergenic | 40.0% |
| AGTTGGAGTGATGGTTGACT+TGG | + | chr7.3:42660861-42660880 | MS.gene96838:intron | 45.0% | |
| ATCAGATGCCCTGATTGTGA+TGG | + | chr7.3:42661177-42661196 | MS.gene96838:intron | 45.0% | |
| GAGAGCAAATGCAGCAAGAA+AGG | + | chr7.3:42661233-42661252 | MS.gene96838:CDS | 45.0% | |
| GAGTGGTGAATAGCAAACAG+TGG | + | chr7.3:42660636-42660655 | MS.gene96838:intron | 45.0% | |
| TGTGCTCGTTGTGATGGTTT+GGG | + | chr7.3:42661273-42661292 | MS.gene96838:CDS | 45.0% | |
| TTGTGCTCGTTGTGATGGTT+TGG | + | chr7.3:42661272-42661291 | MS.gene96838:CDS | 45.0% | |
| ! | CTATGACCACTAATCGACTC+CGG | - | chr7.3:42660756-42660775 | None:intergenic | 45.0% |
| ! | GTTGTTGTTAGAGGAGGTGT+TGG | + | chr7.3:42660603-42660622 | MS.gene96838:intron | 45.0% |
| !! | AGGAGGTGTTGGACAACTAT+CGG | + | chr7.3:42660614-42660633 | MS.gene96838:intron | 45.0% |
| !! | AGGGTTTGTTAGGAAAGGTG+GGG | + | chr7.3:42661203-42661222 | MS.gene96838:CDS | 45.0% |
| !! | CAGGGTTTGTTAGGAAAGGT+GGG | + | chr7.3:42661202-42661221 | MS.gene96838:CDS | 45.0% |
| !! | GTCTTAGTGTTGGTCGTTGA+TGG | + | chr7.3:42660907-42660926 | MS.gene96838:intron | 45.0% |
| AACCCTGCTCCATCACAATC+AGG | - | chr7.3:42661189-42661208 | None:intergenic | 50.0% | |
| ACCCTGCTCCATCACAATCA+GGG | - | chr7.3:42661188-42661207 | None:intergenic | 50.0% | |
| GTGTTGGACAACTATCGGAG+TGG | + | chr7.3:42660619-42660638 | MS.gene96838:intron | 50.0% | |
| TGATGGTCATCGATCCTTGG+TGG | + | chr7.3:42660924-42660943 | MS.gene96838:intron | 50.0% | |
| ! | AATGATGATTGGCGGACAGG+TGG | + | chr7.3:42660685-42660704 | MS.gene96838:intron | 50.0% |
| ! | GTGATGGAGCAGGGTTTGTT+AGG | + | chr7.3:42661193-42661212 | MS.gene96838:CDS | 50.0% |
| ! | TGGTGGACAAGGGATTGCAA+TGG | + | chr7.3:42660730-42660749 | MS.gene96838:intron | 50.0% |
| !! | CGTTGATGGTCATCGATCCT+TGG | + | chr7.3:42660921-42660940 | MS.gene96838:intron | 50.0% |
| !! | GCAGGGTTTGTTAGGAAAGG+TGG | + | chr7.3:42661201-42661220 | MS.gene96838:CDS | 50.0% |
| !! | GGAGCAGGGTTTGTTAGGAA+AGG | + | chr7.3:42661198-42661217 | MS.gene96838:CDS | 50.0% |
| !! | GGAGTGATGGTTGACTTGGT+CGG | + | chr7.3:42660865-42660884 | MS.gene96838:intron | 50.0% |
| !! | GTTGGTGGTGGTCTTAGTGT+TGG | + | chr7.3:42660897-42660916 | MS.gene96838:intron | 50.0% |
| !! | TGTGGTGTCATAGTGGTGGT+TGG | + | chr7.3:42660814-42660833 | MS.gene96838:intron | 50.0% |
| AAGGTCCGGGGTTCAAACCT+TGG | + | chr7.3:42660484-42660503 | MS.gene96838:intron | 55.0% | |
| CAATGGCCGGAGTCGATTAG+TGG | + | chr7.3:42660747-42660766 | MS.gene96838:intron | 55.0% | |
| GGACAAGGGATTGCAATGGC+CGG | + | chr7.3:42660734-42660753 | MS.gene96838:intron | 55.0% | |
| GGTAGCCAAGGTTTGAACCC+CGG | - | chr7.3:42660492-42660511 | None:intergenic | 55.0% | |
| ! | GCCCTGATTGTGATGGAGCA+GGG | + | chr7.3:42661184-42661203 | MS.gene96838:CDS | 55.0% |
| ! | GGCAATGATGATTGGCGGAC+AGG | + | chr7.3:42660682-42660701 | MS.gene96838:intron | 55.0% |
| ! | GGTGTCATAGTGGTGGTTGG+TGG | + | chr7.3:42660817-42660836 | MS.gene96838:intron | 55.0% |
| ! | TGCCCTGATTGTGATGGAGC+AGG | + | chr7.3:42661183-42661202 | MS.gene96838:CDS | 55.0% |
| !! | GTCATAGTGGTGGTTGGTGG+TGG | + | chr7.3:42660820-42660839 | MS.gene96838:intron | 55.0% |
| !! | GTGATGGTTGACTTGGTCGG+TGG | + | chr7.3:42660868-42660887 | MS.gene96838:intron | 55.0% |
| !! | TGGTGGTTGGTGGTGGTTAG+AGG | + | chr7.3:42660827-42660846 | MS.gene96838:intron | 55.0% |
| !! | TTGACTTGGTCGGTGGTGAG+TGG | + | chr7.3:42660875-42660894 | MS.gene96838:intron | 55.0% |
| CTTGGTCGGTGGTGAGTGGT+TGG | + | chr7.3:42660879-42660898 | MS.gene96838:intron | 60.0% | |
| GGTCGGTGGTGAGTGGTTGG+TGG | + | chr7.3:42660882-42660901 | MS.gene96838:intron | 65.0% | |
| !! | CGGTGGTGAGTGGTTGGTGG+TGG | + | chr7.3:42660885-42660904 | MS.gene96838:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 42659671 | 42661320 | 42659671 | ID=MS.gene96838 |
| chr7.3 | mRNA | 42659671 | 42661320 | 42659671 | ID=MS.gene96838.t1;Parent=MS.gene96838 |
| chr7.3 | exon | 42659671 | 42659912 | 42659671 | ID=MS.gene96838.t1.exon1;Parent=MS.gene96838.t1 |
| chr7.3 | CDS | 42659671 | 42659912 | 42659671 | ID=cds.MS.gene96838.t1;Parent=MS.gene96838.t1 |
| chr7.3 | exon | 42661182 | 42661320 | 42661182 | ID=MS.gene96838.t1.exon2;Parent=MS.gene96838.t1 |
| chr7.3 | CDS | 42661182 | 42661320 | 42661182 | ID=cds.MS.gene96838.t1;Parent=MS.gene96838.t1 |
| Gene Sequence |
| Protein sequence |
