AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09357

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 94 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAATGTTTAGGTAAAA+TGG 0.148078 5.2:+69031126 MS.gene09357:CDS
TTCCTACCATTAAGAAATTA+AGG 0.158017 5.2:+69031071 MS.gene09357:CDS
ACGCAATCACCGTCGGTAAA+AGG 0.192964 5.2:+69030453 MS.gene09357:CDS
TGAAACTGAGGTTTCTGTTT+TGG 0.219895 5.2:+69031318 MS.gene09357:CDS
GGGCTTATGCTGAAAGATTA+AGG 0.231515 5.2:+69031092 MS.gene09357:CDS
ATAAGCCCTTAATTTCTTAA+TGG 0.241696 5.2:-69031077 None:intergenic
ACACATGAACCTACGTTTCT+AGG 0.249945 5.2:-69030890 None:intergenic
GCTCTAGGCCATTCTGCTTC+TGG 0.309364 5.2:-69029653 None:intergenic
TCTTAGCCTGTCCTCTTTGT+TGG 0.319230 5.2:-69030972 None:intergenic
AGTTATTGGAGCTGGCAAAA+TGG 0.324891 5.2:+69030589 MS.gene09357:CDS
TCCTTTAGCAAGCGAAGAAA+TGG 0.328100 5.2:+69030835 MS.gene09357:CDS
ATATATCTCCATTCGGTTGC+AGG 0.334402 5.2:-69029729 None:intergenic
GCTGAGCTTGAGAAATGTTT+AGG 0.335012 5.2:+69031118 MS.gene09357:CDS
GTTATTGGAGCTGGCAAAAT+GGG 0.335933 5.2:+69030590 MS.gene09357:CDS
AAAGCAGGACAAGGAGTTAA+TGG 0.352248 5.2:+69030398 MS.gene09357:CDS
GATAATTTACAAACCCCTTT+CGG 0.370528 5.2:+69030721 MS.gene09357:CDS
TCCTACCATTAAGAAATTAA+GGG 0.373626 5.2:+69031072 MS.gene09357:CDS
GAGAAATGTTTAGGTAAAAT+GGG 0.376514 5.2:+69031127 MS.gene09357:CDS
AATGCAAGAATGCTAGTTAT+TGG 0.382486 5.2:+69030575 MS.gene09357:CDS
CAACATCATTTATTTCTTCA+CGG 0.384102 5.2:-69030697 None:intergenic
CGATGATCTTGAGTCTGTTA+AGG 0.386630 5.2:+69030913 MS.gene09357:CDS
GGTCTTGATTCTCTTGTAAT+GGG 0.391946 5.2:+69030338 MS.gene09357:CDS
GACCTGCTGATACTTCAAAA+AGG 0.396196 5.2:-69030319 None:intergenic
GGCTTATGCTGAAAGATTAA+GGG 0.398014 5.2:+69031093 MS.gene09357:CDS
GGACAAGGAGTTAATGGCTT+TGG 0.405221 5.2:+69030404 MS.gene09357:CDS
AGGTCTTGATTCTCTTGTAA+TGG 0.410658 5.2:+69030337 MS.gene09357:CDS
AGGAGCAGCATTGTCGTTAT+CGG 0.419642 5.2:+69029581 MS.gene09357:CDS
ATCAAACATTTGGTTGCAAA+AGG 0.420709 5.2:+69030623 MS.gene09357:CDS
GGTGATCATCGGCGAAGAAT+CGG 0.423290 5.2:+69031012 MS.gene09357:CDS
GAAGCTTGTGATCAAACATT+TGG 0.426546 5.2:+69030613 MS.gene09357:CDS
CTGTGGATGATCTTAGTAAA+GGG 0.435856 5.2:+69031179 MS.gene09357:CDS
TCGGAAATGCTCGAATGTAT+TGG 0.438087 5.2:+69030740 MS.gene09357:CDS
CCCATTTCTTCGCTTGCTAA+AGG 0.439472 5.2:-69030836 None:intergenic
CGCAATCACCGTCGGTAAAA+GGG 0.440824 5.2:+69030454 MS.gene09357:CDS
AATCGGGACAATTTGAAGCT+TGG 0.456577 5.2:+69031029 MS.gene09357:CDS
AGGCCATTCTGCTTCTGGTA+TGG 0.459415 5.2:-69029648 None:intergenic
GTGATCATCGGCGAAGAATC+GGG 0.471676 5.2:+69031013 MS.gene09357:CDS
GGAGCAGAAGATTAGAGCTA+AGG 0.475137 5.2:+69031339 MS.gene09357:CDS
TTGCCTTGTGAGGCTTGATC+AGG 0.475485 5.2:-69030554 None:intergenic
ATTGTGAATAAAATGCTTCA+TGG 0.475489 5.2:+69031202 MS.gene09357:CDS
CAATGTTGATGATCTTAAAG+AGG 0.478016 5.2:+69030940 MS.gene09357:CDS
ACATTCGAGCATTTCCGAAA+GGG 0.488912 5.2:-69030735 None:intergenic
CATTCTTGCATTGCCTTGTG+AGG 0.495602 5.2:-69030564 None:intergenic
GGAGCAGCATTGTCGTTATC+GGG 0.504375 5.2:+69029582 MS.gene09357:CDS
CAAAGCTCACCAATGGCTCT+AGG 0.509555 5.2:-69029668 None:intergenic
CCTTTAGCAAGCGAAGAAAT+GGG 0.509769 5.2:+69030836 MS.gene09357:CDS
GCTGTGGATGATCTTAGTAA+AGG 0.511697 5.2:+69031178 MS.gene09357:CDS
GCAGAATGGCCTAGAGCCAT+TGG 0.516082 5.2:+69029659 MS.gene09357:CDS
GATTCTCTTGTAATGGGAGA+AGG 0.520460 5.2:+69030344 MS.gene09357:CDS
TACTTTGACAGCTCTGATGC+AGG 0.523941 5.2:-69030260 None:intergenic
CTGCAATGTTAGTCTCAGTT+CGG 0.529719 5.2:-69030478 None:intergenic
TCACATCTCAAATGTTGCAT+TGG 0.531540 5.2:-69031226 None:intergenic
GTAGTTGTTAATCGAACTGA+AGG 0.532592 5.2:+69030659 MS.gene09357:CDS
CGACAACATATATCTCCATT+CGG 0.533183 5.2:-69029736 None:intergenic
TGGTGCAGTTTCTGTTAGCT+CGG 0.542119 5.2:+69030502 MS.gene09357:CDS
CAACTTGTTTGACTTGTGCA+AGG 0.546113 5.2:-69030373 None:intergenic
CATTCGAGCATTTCCGAAAG+GGG 0.550182 5.2:-69030734 None:intergenic
AAGAAAAGCAATGGAAGCAC+AGG 0.550420 5.2:+69030991 MS.gene09357:CDS
GCAGAAGATTAGAGCTAAGG+TGG 0.550559 5.2:+69031342 MS.gene09357:CDS
GTCAAACAAGTTGTGAAAGC+AGG 0.553805 5.2:+69030383 MS.gene09357:CDS
ATGCAACATTTGAGATGTGA+TGG 0.556625 5.2:+69031229 MS.gene09357:CDS
TCAAACATTTGGTTGCAAAA+GGG 0.561106 5.2:+69030624 MS.gene09357:CDS
TGATGATCTTAAAGAGGTTG+TGG 0.565478 5.2:+69030946 MS.gene09357:CDS
AGAATGCTAGTTATTGGAGC+TGG 0.568228 5.2:+69030581 MS.gene09357:CDS
GCCCTTAATTTCTTAATGGT+AGG 0.568816 5.2:-69031073 None:intergenic
ATGGAAGCACAGGTGATCAT+CGG 0.577892 5.2:+69031001 MS.gene09357:CDS
AATGTTTAGTCTTGAAACTG+AGG 0.579905 5.2:+69031306 MS.gene09357:CDS
CAAGTTGTGAAAGCAGGACA+AGG 0.580921 5.2:+69030389 MS.gene09357:CDS
TGGCTGCCAACAAAGAGGAC+AGG 0.581027 5.2:+69030966 MS.gene09357:CDS
GGACAGGCTAAGAAAAGCAA+TGG 0.581200 5.2:+69030982 MS.gene09357:CDS
TTGCCATACCAGAAGCAGAA+TGG 0.581580 5.2:+69029645 MS.gene09357:CDS
TACATTCGAGCATTTCCGAA+AGG 0.590437 5.2:-69030736 None:intergenic
CAACAGGATATACAAAGGAA+AGG 0.593342 5.2:+69029561 None:intergenic
TCTGAGCACCTGCAACCGAA+TGG 0.595913 5.2:+69029721 MS.gene09357:CDS
TTGATCAGGTAACTTCATCA+AGG 0.596661 5.2:-69030540 None:intergenic
GTGTCAAAGAAGTCACTGAA+TGG 0.597620 5.2:+69029777 MS.gene09357:CDS
ATTTCTGTTCCTAGAAACGT+AGG 0.599065 5.2:+69030881 MS.gene09357:CDS
ACTGAGACTAACATTGCAGC+TGG 0.606231 5.2:+69030482 MS.gene09357:CDS
GATGTGATGGGAGTGATAGT+AGG 0.608822 5.2:+69031242 MS.gene09357:CDS
TTCAAGCACGCAATCACCGT+CGG 0.609589 5.2:+69030446 MS.gene09357:CDS
CAGTGACTTCTTTGACACCA+CGG 0.610814 5.2:-69029772 None:intergenic
GTGTCATATTAATCTTACTG+TGG 0.617221 5.2:-69031373 None:intergenic
CAGATTACAAAGCTCACCAA+TGG 0.622987 5.2:-69029675 None:intergenic
TTACCTGATCAAGCCTCACA+AGG 0.626575 5.2:+69030551 MS.gene09357:CDS
TAGCAAGCGAAGAAATGGGA+GGG 0.637799 5.2:+69030840 MS.gene09357:CDS
TTATTGGAGCTGGCAAAATG+GGG 0.640758 5.2:+69030591 MS.gene09357:CDS
GAACAGAAATATCAACGAAG+AGG 0.651799 5.2:-69030868 None:intergenic
GGTTGTGGCTGCCAACAAAG+AGG 0.660579 5.2:+69030961 MS.gene09357:CDS
GGCTTTGGTAGAAACATCAG+TGG 0.667204 5.2:+69030419 MS.gene09357:CDS
TGCAACATTTGAGATGTGAT+GGG 0.668284 5.2:+69031230 MS.gene09357:CDS
GCTTTCAACAGGATATACAA+AGG 0.679814 5.2:+69029556 None:intergenic
TTAGCAAGCGAAGAAATGGG+AGG 0.688497 5.2:+69030839 MS.gene09357:CDS
GTCGCACTTTCTCAGCACCG+TGG 0.705085 5.2:+69029755 MS.gene09357:CDS
TAGTTGTTAATCGAACTGAA+GGG 0.734798 5.2:+69030660 MS.gene09357:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATCTACATATATGTT+TGG + chr5.2:69029850-69029869 MS.gene09357:intron 15.0%
!! ATAGAAATAGATTATGCATT+AGG + chr5.2:69029989-69030008 MS.gene09357:intron 20.0%
!!! ACATTTTGTTTCAAAATCAA+AGG - chr5.2:69030806-69030825 None:intergenic 20.0%
!!! GATTTTGAAACAAAATGTTA+AGG + chr5.2:69030808-69030827 MS.gene09357:CDS 20.0%
! AAACAAATTGAGTGTATGTT+TGG - chr5.2:69030171-69030190 None:intergenic 25.0%
! ACTTATAGCTTATACGAAAA+CGG + chr5.2:69029942-69029961 MS.gene09357:intron 25.0%
! AGAAAAAAATGAACCTACAT+TGG - chr5.2:69029807-69029826 None:intergenic 25.0%
! ATAAGCCCTTAATTTCTTAA+TGG - chr5.2:69031080-69031099 None:intergenic 25.0%
! ATTGTGAATAAAATGCTTCA+TGG + chr5.2:69031202-69031221 MS.gene09357:CDS 25.0%
! GAGAAATGTTTAGGTAAAAT+GGG + chr5.2:69031127-69031146 MS.gene09357:CDS 25.0%
! TCCTACCATTAAGAAATTAA+GGG + chr5.2:69031072-69031091 MS.gene09357:CDS 25.0%
! TGAGAAATGTTTAGGTAAAA+TGG + chr5.2:69031126-69031145 MS.gene09357:CDS 25.0%
! TTCCTACCATTAAGAAATTA+AGG + chr5.2:69031071-69031090 MS.gene09357:CDS 25.0%
!! CAACATCATTTATTTCTTCA+CGG - chr5.2:69030700-69030719 None:intergenic 25.0%
!! TCTATTGCATTGATACATAT+TGG + chr5.2:69030197-69030216 MS.gene09357:intron 25.0%
!!! TCTATTTTTGCTATACAACA+AGG + chr5.2:69030283-69030302 MS.gene09357:CDS 25.0%
AATGCAAGAATGCTAGTTAT+TGG + chr5.2:69030575-69030594 MS.gene09357:CDS 30.0%
ATAAGCTATAAGTTGTTCTC+AGG - chr5.2:69029935-69029954 None:intergenic 30.0%
ATCAAACATTTGGTTGCAAA+AGG + chr5.2:69030623-69030642 MS.gene09357:CDS 30.0%
GATAATTTACAAACCCCTTT+CGG + chr5.2:69030721-69030740 MS.gene09357:CDS 30.0%
TAGTTGTTAATCGAACTGAA+GGG + chr5.2:69030660-69030679 MS.gene09357:CDS 30.0%
TCAAACATTTGGTTGCAAAA+GGG + chr5.2:69030624-69030643 MS.gene09357:CDS 30.0%
!! AATGTTTAGTCTTGAAACTG+AGG + chr5.2:69031306-69031325 MS.gene09357:CDS 30.0%
!! CAATGTTGATGATCTTAAAG+AGG + chr5.2:69030940-69030959 MS.gene09357:CDS 30.0%
AGGTCTTGATTCTCTTGTAA+TGG + chr5.2:69030337-69030356 MS.gene09357:CDS 35.0%
ATTTCTGTTCCTAGAAACGT+AGG + chr5.2:69030881-69030900 MS.gene09357:CDS 35.0%
CGACAACATATATCTCCATT+CGG - chr5.2:69029739-69029758 None:intergenic 35.0%
CTGTGGATGATCTTAGTAAA+GGG + chr5.2:69031179-69031198 MS.gene09357:CDS 35.0%
GAACAGAAATATCAACGAAG+AGG - chr5.2:69030871-69030890 None:intergenic 35.0%
GAAGCTTGTGATCAAACATT+TGG + chr5.2:69030613-69030632 MS.gene09357:CDS 35.0%
GACGGTGTATATTTGGATTT+CGG - chr5.2:69030145-69030164 None:intergenic 35.0%
GCCCTTAATTTCTTAATGGT+AGG - chr5.2:69031076-69031095 None:intergenic 35.0%
GGCTTATGCTGAAAGATTAA+GGG + chr5.2:69031093-69031112 MS.gene09357:CDS 35.0%
GGTCTTGATTCTCTTGTAAT+GGG + chr5.2:69030338-69030357 MS.gene09357:CDS 35.0%
GTAGTTGTTAATCGAACTGA+AGG + chr5.2:69030659-69030678 MS.gene09357:CDS 35.0%
TAAGAAGACACAAAAAGCTG+TGG + chr5.2:69031162-69031181 MS.gene09357:CDS 35.0%
TCACATCTCAAATGTTGCAT+TGG - chr5.2:69031229-69031248 None:intergenic 35.0%
TGAGTGTATGTTTGGATTGA+CGG - chr5.2:69030163-69030182 None:intergenic 35.0%
TGATGATCTTAAAGAGGTTG+TGG + chr5.2:69030946-69030965 MS.gene09357:CDS 35.0%
TGCAAGAATTAGTGCATGAT+TGG + chr5.2:69030081-69030100 MS.gene09357:intron 35.0%
TTGATCAGGTAACTTCATCA+AGG - chr5.2:69030543-69030562 None:intergenic 35.0%
TTGGATTGACGGTGTATATT+TGG - chr5.2:69030152-69030171 None:intergenic 35.0%
! ATGCAACATTTGAGATGTGA+TGG + chr5.2:69031229-69031248 MS.gene09357:CDS 35.0%
! TGAAACTGAGGTTTCTGTTT+TGG + chr5.2:69031318-69031337 MS.gene09357:CDS 35.0%
! TGCAAAAGGGTGTAAAAAGA+TGG + chr5.2:69030637-69030656 MS.gene09357:CDS 35.0%
! TGCAACATTTGAGATGTGAT+GGG + chr5.2:69031230-69031249 MS.gene09357:CDS 35.0%
!!! ATTCTTGTTTTGCAGACAAG+TGG + chr5.2:69030233-69030252 MS.gene09357:intron 35.0%
AAAGCAGGACAAGGAGTTAA+TGG + chr5.2:69030398-69030417 MS.gene09357:CDS 40.0%
ACACATGAACCTACGTTTCT+AGG - chr5.2:69030893-69030912 None:intergenic 40.0%
ACATTCGAGCATTTCCGAAA+GGG - chr5.2:69030738-69030757 None:intergenic 40.0%
ACTGAATGGATGTCCAATGT+AGG + chr5.2:69029791-69029810 MS.gene09357:intron 40.0%
AGAATGCTAGTTATTGGAGC+TGG + chr5.2:69030581-69030600 MS.gene09357:CDS 40.0%
AGTTATTGGAGCTGGCAAAA+TGG + chr5.2:69030589-69030608 MS.gene09357:CDS 40.0%
ATATATCTCCATTCGGTTGC+AGG - chr5.2:69029732-69029751 None:intergenic 40.0%
CACTAATTCTTGCACGAACT+CGG - chr5.2:69030075-69030094 None:intergenic 40.0%
CAGATTACAAAGCTCACCAA+TGG - chr5.2:69029678-69029697 None:intergenic 40.0%
CCTTTAGCAAGCGAAGAAAT+GGG + chr5.2:69030836-69030855 MS.gene09357:CDS 40.0%
CGATGATCTTGAGTCTGTTA+AGG + chr5.2:69030913-69030932 MS.gene09357:CDS 40.0%
GACCTGCTGATACTTCAAAA+AGG - chr5.2:69030322-69030341 None:intergenic 40.0%
GCTGAGCTTGAGAAATGTTT+AGG + chr5.2:69031118-69031137 MS.gene09357:CDS 40.0%
GCTGTGGATGATCTTAGTAA+AGG + chr5.2:69031178-69031197 MS.gene09357:CDS 40.0%
GGGCTTATGCTGAAAGATTA+AGG + chr5.2:69031092-69031111 MS.gene09357:CDS 40.0%
GTCAAACAAGTTGTGAAAGC+AGG + chr5.2:69030383-69030402 MS.gene09357:CDS 40.0%
GTGTCAAAGAAGTCACTGAA+TGG + chr5.2:69029777-69029796 MS.gene09357:CDS 40.0%
GTTATTGGAGCTGGCAAAAT+GGG + chr5.2:69030590-69030609 MS.gene09357:CDS 40.0%
TACATTCGAGCATTTCCGAA+AGG - chr5.2:69030739-69030758 None:intergenic 40.0%
TCCTTTAGCAAGCGAAGAAA+TGG + chr5.2:69030835-69030854 MS.gene09357:CDS 40.0%
TCGGAAATGCTCGAATGTAT+TGG + chr5.2:69030740-69030759 MS.gene09357:CDS 40.0%
TTAGTGCATGATTGGAACCA+CGG + chr5.2:69030089-69030108 MS.gene09357:intron 40.0%
TTATTGGAGCTGGCAAAATG+GGG + chr5.2:69030591-69030610 MS.gene09357:CDS 40.0%
! AAGAAAAGCAATGGAAGCAC+AGG + chr5.2:69030991-69031010 MS.gene09357:CDS 40.0%
! AATCGGGACAATTTGAAGCT+TGG + chr5.2:69031029-69031048 MS.gene09357:CDS 40.0%
! CTGCAATGTTAGTCTCAGTT+CGG - chr5.2:69030481-69030500 None:intergenic 40.0%
! GATTCTCTTGTAATGGGAGA+AGG + chr5.2:69030344-69030363 MS.gene09357:CDS 40.0%
!! CAACTTGTTTGACTTGTGCA+AGG - chr5.2:69030376-69030395 None:intergenic 40.0%
!!! CACCTTTTTGAAGTATCAGC+AGG + chr5.2:69030317-69030336 MS.gene09357:CDS 40.0%
ACTGAGACTAACATTGCAGC+TGG + chr5.2:69030482-69030501 MS.gene09357:CDS 45.0%
AGGAGCAGCATTGTCGTTAT+CGG + chr5.2:69029581-69029600 MS.gene09357:CDS 45.0%
CAAGTTGTGAAAGCAGGACA+AGG + chr5.2:69030389-69030408 MS.gene09357:CDS 45.0%
CAGTGACTTCTTTGACACCA+CGG - chr5.2:69029775-69029794 None:intergenic 45.0%
CATTCGAGCATTTCCGAAAG+GGG - chr5.2:69030737-69030756 None:intergenic 45.0%
CATTCTTGCATTGCCTTGTG+AGG - chr5.2:69030567-69030586 None:intergenic 45.0%
GCAGAAGATTAGAGCTAAGG+TGG + chr5.2:69031342-69031361 MS.gene09357:CDS 45.0%
GGACAAGGAGTTAATGGCTT+TGG + chr5.2:69030404-69030423 MS.gene09357:CDS 45.0%
GGACAGGCTAAGAAAAGCAA+TGG + chr5.2:69030982-69031001 MS.gene09357:CDS 45.0%
GGAGCAGAAGATTAGAGCTA+AGG + chr5.2:69031339-69031358 MS.gene09357:CDS 45.0%
TAGCAAGCGAAGAAATGGGA+GGG + chr5.2:69030840-69030859 MS.gene09357:CDS 45.0%
TCTTAGCCTGTCCTCTTTGT+TGG - chr5.2:69030975-69030994 None:intergenic 45.0%
TGGTGCAGTTTCTGTTAGCT+CGG + chr5.2:69030502-69030521 MS.gene09357:CDS 45.0%
TTACCTGATCAAGCCTCACA+AGG + chr5.2:69030551-69030570 MS.gene09357:CDS 45.0%
TTAGCAAGCGAAGAAATGGG+AGG + chr5.2:69030839-69030858 MS.gene09357:CDS 45.0%
TTGCCATACCAGAAGCAGAA+TGG + chr5.2:69029645-69029664 MS.gene09357:CDS 45.0%
! ATGGAAGCACAGGTGATCAT+CGG + chr5.2:69031001-69031020 MS.gene09357:CDS 45.0%
! CCCATTTCTTCGCTTGCTAA+AGG - chr5.2:69030839-69030858 None:intergenic 45.0%
! GATGTGATGGGAGTGATAGT+AGG + chr5.2:69031242-69031261 MS.gene09357:CDS 45.0%
! GGCTTTGGTAGAAACATCAG+TGG + chr5.2:69030419-69030438 MS.gene09357:CDS 45.0%
! TACTTTGACAGCTCTGATGC+AGG - chr5.2:69030263-69030282 None:intergenic 45.0%
ACGCAATCACCGTCGGTAAA+AGG + chr5.2:69030453-69030472 MS.gene09357:CDS 50.0%
AGGCCATTCTGCTTCTGGTA+TGG - chr5.2:69029651-69029670 None:intergenic 50.0%
CAAAGCTCACCAATGGCTCT+AGG - chr5.2:69029671-69029690 None:intergenic 50.0%
CGCAATCACCGTCGGTAAAA+GGG + chr5.2:69030454-69030473 MS.gene09357:CDS 50.0%
GGAGCAGCATTGTCGTTATC+GGG + chr5.2:69029582-69029601 MS.gene09357:CDS 50.0%
GGTGATCATCGGCGAAGAAT+CGG + chr5.2:69031012-69031031 MS.gene09357:CDS 50.0%
GTGATCATCGGCGAAGAATC+GGG + chr5.2:69031013-69031032 MS.gene09357:CDS 50.0%
GTGTAGCTTCACACTTACCG+TGG - chr5.2:69030109-69030128 None:intergenic 50.0%
TTCAAGCACGCAATCACCGT+CGG + chr5.2:69030446-69030465 MS.gene09357:CDS 50.0%
TTGCCTTGTGAGGCTTGATC+AGG - chr5.2:69030557-69030576 None:intergenic 50.0%
! AGTTCGGACCCTTTTACCGA+CGG - chr5.2:69030465-69030484 None:intergenic 50.0%
! AGTTTTTCGCGCACATCGAC+TGG - chr5.2:69029626-69029645 None:intergenic 50.0%
GCAGAATGGCCTAGAGCCAT+TGG + chr5.2:69029659-69029678 MS.gene09357:CDS 55.0%
GGTTGTGGCTGCCAACAAAG+AGG + chr5.2:69030961-69030980 MS.gene09357:CDS 55.0%
TCTGAGCACCTGCAACCGAA+TGG + chr5.2:69029721-69029740 MS.gene09357:CDS 55.0%
TGGCTGCCAACAAAGAGGAC+AGG + chr5.2:69030966-69030985 MS.gene09357:CDS 55.0%
! GCTCTAGGCCATTCTGCTTC+TGG - chr5.2:69029656-69029675 None:intergenic 55.0%
GTCGCACTTTCTCAGCACCG+TGG + chr5.2:69029755-69029774 MS.gene09357:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 69029567 69031381 69029567 ID=MS.gene09357
chr5.2 mRNA 69029567 69031381 69029567 ID=MS.gene09357.t1;Parent=MS.gene09357
chr5.2 exon 69029567 69029808 69029567 ID=MS.gene09357.t1.exon1;Parent=MS.gene09357.t1
chr5.2 CDS 69029567 69029808 69029567 ID=cds.MS.gene09357.t1;Parent=MS.gene09357.t1
chr5.2 exon 69030248 69031381 69030248 ID=MS.gene09357.t1.exon2;Parent=MS.gene09357.t1
chr5.2 CDS 69030248 69031381 69030248 ID=cds.MS.gene09357.t1;Parent=MS.gene09357.t1
Gene Sequence

>MS.gene09357

GATATACAAAGGAAAGGAGCAGCATTGTCGTTATCGGGCTAAGTATTCATACTACACCAGTCGATGTGCGCGAAAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAATCTGAATCATATTGAAGAAGCAGCAGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTCGCACTTTCTCAGCACCGTGGTGTCAAAGAAGTCACTGAATGGATGTCCAATGTAGGTTCATTTTTTTCTCTATACGCAGTTCTTGTGAAAGCTAAATATCTACATATATGTTTGGATTGACATGTTTAAGTTTATCTATAGACATAAGCATTAGTAAGACTATTTGAGTGAGCTCCTGAGAACAACTTATAGCTTATACGAAAACGGTTTGACTTTATTTTATCTTTTGCTATAGAAATAGATTATGCATTAGGAGTTACATGATGAGCAATTAATTCAGTGAGTTTTTTATTAATTGAATCTGATGATAAATACCGAGTTCGTGCAAGAATTAGTGCATGATTGGAACCACGGTAAGTGTGAAGCTACACGCTATAGCTTTTGCCGAAATCCAAATATACACCGTCAATCCAAACATACACTCAATTTGTTTTTGTTTTCTATTGCATTGATACATATTGGATATTTCTGTTATATTCTTGTTTTGCAGACAAGTGGTATACCTGCATCAGAGCTGTCAAAGTATCTATTTTTGCTATACAACAAGGATGCAACACAACACCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTGCACAAGTCAAACAAGTTGTGAAAGCAGGACAAGGAGTTAATGGCTTTGGTAGAAACATCAGTGGTCTATTCAAGCACGCAATCACCGTCGGTAAAAGGGTCCGAACTGAGACTAACATTGCAGCTGGTGCAGTTTCTGTTAGCTCGGCTGCAGTTGAATTAGCCTTGATGAAGTTACCTGATCAAGCCTCACAAGGCAATGCAAGAATGCTAGTTATTGGAGCTGGCAAAATGGGGAAGCTTGTGATCAAACATTTGGTTGCAAAAGGGTGTAAAAAGATGGTAGTTGTTAATCGAACTGAAGGGAGAGTTGCAGCAATCCGTGAAGAAATAAATGATGTTGAGATAATTTACAAACCCCTTTCGGAAATGCTCGAATGTATTGGTGAAGCAGATGTTGTTTTCACAAGCACTGCATCAGAGAATCCTTTGATTTTGAAACAAAATGTTAAGGAACTTCCTTTAGCAAGCGAAGAAATGGGAGGGAAACGCCTCTTCGTTGATATTTCTGTTCCTAGAAACGTAGGTTCATGTGTCGATGATCTTGAGTCTGTTAAGGTTTACAATGTTGATGATCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGACAGGCTAAGAAAAGCAATGGAAGCACAGGTGATCATCGGCGAAGAATCGGGACAATTTGAAGCTTGGAGAGACTCATTAGAAACTGTTCCTACCATTAAGAAATTAAGGGCTTATGCTGAAAGATTAAGGGTTGCTGAGCTTGAGAAATGTTTAGGTAAAATGGGTGATGATATAAATAAGAAGACACAAAAAGCTGTGGATGATCTTAGTAAAGGGATTGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAGACACTTGAGAATATGCATGCTTTGAACAGAATGTTTAGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAGGTGGAGCAAAAACCACAGTAA
Protein sequence

>MS.gene09357.t1

DIQRKGAALSLSGUVFILHQSMCAKNLPYQKQNGLEPLVSFVIUIILKKQQFUAPATEWRYMLSHFLSTVVSKKSLNGCPIQVVYLHQSCQSIYFCYTTRMQHNTFLKYQQVLILLUWEKVKSLHKSNKLUKQDKELMALVETSVVYSSTQSPSVKGSELRLTLQLVQFLLARLQLNUPUUSYLIKPHKAMQECULLELAKWGSLUSNIWLQKGVKRWULLIELKGELQQSVKKUMMLRUFTNPFRKCSNVLVKQMLFSQALHQRILUFUNKMLRNFLUQAKKWEGNASSLIFLFLETUVHVSMILSLLRFTMLMILKRLWLPTKRTGUEKQWKHRUSSAKNRDNLKLGETHUKLFLPLRNUGLMLKDUGLLSLRNVUVKWVMIUIRRHKKLWMILVKGLUIKCFMVQCNIUDVMGVIVGLUVRHLRICMLUTECLVLKLRFLFWSRRLELRWSKNHS