AlfalfaGEDB | MS.gene066196

M. sativa cultivar XinJiangDaYe / MS.gene066196

KEGG: -
GO: GO:0005575 GO:0016020 GO:0110165
PFAM: PF03381.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066196.t1	XP_013464278.1	98.4	318	5	0	10	327	30	347	4.90E-178	633.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066196.t1	Q9SLK2	75.6	320	76	2	10	328	31	349	3.1e-136	486.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066196.t1	A0A072VAB2	98.4	318	5	0	10	327	30	347	3.6e-178	633.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene066196	0.836657	8.23E-57	-1.69E-46
MS.gene049227	MS.gene066196	0.849616	2.88E-60	-1.69E-46
MS.gene049350	MS.gene066196	0.840658	7.62E-58	-1.69E-46
MS.gene049711	MS.gene066196	0.880788	4.11E-70	-1.69E-46
MS.gene049807	MS.gene066196	0.891014	5.84E-74	-1.69E-46
MS.gene049824	MS.gene066196	0.813104	3.03E-51	-1.69E-46
MS.gene050224	MS.gene066196	0.823878	1.09E-53	-1.69E-46
MS.gene050238	MS.gene066196	0.812258	4.64E-51	-1.69E-46
MS.gene050258	MS.gene066196	0.81301	3.18E-51	-1.69E-46
MS.gene050559	MS.gene066196	0.834157	3.52E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066196.t1	MTR_2g067760	98.119	319	6	0	10	328	30	348	0.0	651
MS.gene066196.t1	MTR_2g101400	63.009	319	116	2	10	326	26	344	4.25e-150	426
MS.gene066196.t1	MTR_7g086110	64.174	321	112	3	7	324	1	321	9.67e-149	421
MS.gene066196.t1	MTR_2g451450	62.252	302	113	1	11	311	30	331	1.02e-138	396
MS.gene066196.t1	MTR_2g451450	65.789	228	78	0	96	323	1	228	5.59e-110	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066196.t1	AT1G54320	75.625	320	76	2	10	328	31	349	1.08e-178	498
MS.gene066196.t1	AT1G79450	72.414	319	86	2	10	327	31	348	2.62e-172	482
MS.gene066196.t1	AT3G12740	73.125	320	84	2	10	328	32	350	1.07e-171	481
MS.gene066196.t1	AT1G16360	70.625	320	92	2	9	327	16	334	4.28e-171	478
MS.gene066196.t1	AT1G16360	70.846	319	91	2	10	327	31	348	4.32e-171	479
MS.gene066196.t1	AT1G16360	69.737	304	90	2	9	311	16	318	1.26e-158	447
MS.gene066196.t1	AT1G79450	72.826	276	73	2	53	327	7	281	6.52e-149	420
MS.gene066196.t1	AT5G46150	56.051	314	134	2	11	323	28	338	4.99e-129	372
MS.gene066196.t1	AT5G46150	56.051	314	134	2	11	323	28	338	4.99e-129	372
MS.gene066196.t1	AT5G46150	56.623	302	130	1	11	311	28	329	3.07e-127	367

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Find 67 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGTCAATTGTACCTTG+TGG	0.623062	2.2:-25420307	MS.gene066196:CDS
AATAGGTGATTTCATGTGCT+TGG	0.475930	2.2:+25421479	None:intergenic
AATGAGCACATACTATCCAT+CGG	0.647540	2.2:+25422159	None:intergenic
AATTTGACGGTGAACAAGAA+AGG	0.544214	2.2:-25420229	MS.gene066196:CDS
ACATCTTAATGAATCGATAC+CGG	0.606029	2.2:-25420119	MS.gene066196:intron
ACCGCTCGAGGTGTAAGAAT+AGG	0.473978	2.2:+25422007	None:intergenic
ACCGGATGGCACTAAAGACG+AGG	0.712451	2.2:-25421659	MS.gene066196:CDS
ACCTCGTCTTTAGTGCCATC+CGG	0.507629	2.2:+25421658	None:intergenic
AGCAGGAGGATCTTATTGTC+TGG	0.479332	2.2:-25419730	MS.gene066196:CDS
AGCTGATAGTATACATAAAT+AGG	0.366101	2.2:+25421462	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGAATAGTGGTGCAT+TGG	-	chr2.2:25419074-25419093	MS.gene066196:intron	30.0%
AAAATATGAAACACTGACAC+TGG	+	chr2.2:25420438-25420457	None:intergenic	30.0%
AAAGGAGTTGAAAGAGTTAA+AGG	+	chr2.2:25421961-25421980	None:intergenic	30.0%
AAATATTCAAAAGGTGAGCA+TGG	+	chr2.2:25420573-25420592	None:intergenic	30.0%
AACAATTTCAACAACCTGAT+AGG	+	chr2.2:25418638-25418657	None:intergenic	30.0%
AAGAGTAATATGAACTGACA+TGG	-	chr2.2:25418245-25418264	MS.gene066196:intron	30.0%
AATAAGATAGATCCCAAAGA+AGG	+	chr2.2:25419776-25419795	None:intergenic	30.0%
AATCAGCAATGAATTCAAAG+AGG	+	chr2.2:25418373-25418392	None:intergenic	30.0%
AATTCATGAAGTTCACATTG+CGG	-	chr2.2:25418793-25418812	MS.gene066196:intron	30.0%
ACATCTTAATGAATCGATAC+CGG	-	chr2.2:25420221-25420240	MS.gene066196:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	25418166	25422196	25418166	ID=MS.gene066196
chr2.2	mRNA	25418166	25422196	25418166	ID=MS.gene066196.t1;Parent=MS.gene066196
chr2.2	exon	25422172	25422196	25422172	ID=MS.gene066196.t1.exon1;Parent=MS.gene066196.t1
chr2.2	CDS	25422172	25422196	25422172	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1
chr2.2	exon	25422009	25422067	25422009	ID=MS.gene066196.t1.exon2;Parent=MS.gene066196.t1
chr2.2	CDS	25422009	25422067	25422009	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1
chr2.2	exon	25421813	25421887	25421813	ID=MS.gene066196.t1.exon3;Parent=MS.gene066196.t1
chr2.2	CDS	25421813	25421887	25421813	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1
chr2.2	exon	25421606	25421719	25421606	ID=MS.gene066196.t1.exon4;Parent=MS.gene066196.t1
chr2.2	CDS	25421606	25421719	25421606	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1
chr2.2	exon	25421435	25421505	25421435	ID=MS.gene066196.t1.exon5;Parent=MS.gene066196.t1
chr2.2	CDS	25421435	25421505	25421435	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1
chr2.2	exon	25420120	25420417	25420120	ID=MS.gene066196.t1.exon6;Parent=MS.gene066196.t1
chr2.2	CDS	25420120	25420417	25420120	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1
chr2.2	exon	25419470	25419759	25419470	ID=MS.gene066196.t1.exon7;Parent=MS.gene066196.t1
chr2.2	CDS	25419470	25419759	25419470	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1
chr2.2	exon	25418166	25418220	25418166	ID=MS.gene066196.t1.exon8;Parent=MS.gene066196.t1
chr2.2	CDS	25418166	25418220	25418166	ID=cds.MS.gene066196.t1;Parent=MS.gene066196.t1

Gene Sequence

>MS.gene066196

ATGGAGAGTTGTATGCCGATGGATAGTATGTGCTCATTTACCAATAATTACTGTTTTATTTCTTATTATTTTGGGTATGAAGAGTAATATGAACTGACATGGAGTTTATCTCAATTTAATATCTTCTAGATTCAAAGTTTACTCAGCAAGAACTTCCAGCTTGCAAGCCTATTCTTACACCTCGAGCGGTAAAACTACTAGATACCTCTTTGAATTCATTGCTGATTATTATATGTTTGACTATATGTGTCTTCAAATTGTTATTGATGCAGTGGTAAATTTGTACTTAATTTAAGTGTCTCCCTGCAGGTTATTTCGGCATTCTTGCTTGTCAGTGTTGTGTTCATTCCTATCGGAGTTGCTTCGCTAATGGCTTCAAGAAAGGTAAGCACGAGTGCTATAATGAATTGAATTTATACGTACAGTTACAGATACATGTAAGGCTGAGTATGCCTTTTACTTTCTTGTACCTATCAGGTTGTTGAAATTGTTTATGGGTATGAGTCAGACTGCTTACCGGATGGCACTAAAGACGAGGTAGCATACATTCAGAGTCCTGAAACAGATAAAACGTGCAACATAACACTGAATGTAAGTCTCCTTGACACCAGTCTAGCTCTGTCCCATAATTCATGAAGTTCACATTGCGGCAATCTTATAATCTTTTCTTGAACTGTGTTCTTATGAAAAGGTGACCAAGCACATGAAATCACCTATTTATGTATACTATCAGCTTGACAACTTTTACCAGAATCATCGCCGGTATGCAATAACTTTTCTTTGGCACATATCATACATTCTTTTTTATTTGTCAAGCATATAGTCTCAACTCTCTATTTAAACATCCTAATGAAATTTCATATAGCCTATGTAAGACTTCCCAGATGGTGGCCCAGAGCAAGCAACCCAAAAATGAATAGTGGTGCATTGGATAGTTGAATGAGTGCTACAACAAAATAGTAGATGCGGAACATATTATCTTTAAGACTTTAACTCTAACAAAATAGCAGCACTAACATACAGATGCTTAAAGAAAATACTTAAAACGTATTCATAATTAAAAACATCTATTGAGTTCAACTTTCTTATAAAATTGGTTATTATAGTTTAATGAATACAATTTATTTTAAAGTCTTGGGTAGATGTAAACACAAGCTTAGTTTTTTTTGTTATTTTAGACAGTATATAAGGATTTATCATACTCAATTCACTTTATCACATTTATTTATGTCAAGTAATTTGGTGGAGTTGAACAAGTGGCCTGGAGGGAAATGTACCAAAGGTCTGTGCAGGAGCAGTAGGTCTCATATGCCTAACTGTCTTTGGACAGAATTGTGAAATTAAATGAGCATTAAAAAAGGATGAGAGGGAGTGGTTTGATTATAAAGAATTAATTGAGTAAATAGATAGGTTATTAGATAACCTACTAACTCAGTAGAGATGAACACATGGCCTGGAGCATGGTATGTAAGGTGCTGTGCACGAACACCAAGTCCCACAGACCTAACGTTTTTTTGAGGGAGTTGTAGAATTAGAGGGGAGATGAAAGGATAGGAGGAATTACAAGAAGTTGAGTGTGAAGAATCTGTATAATCTCCCTCCTTTCCCCTTCTTTGGGATCTATCTTATTCCTCTCTGGACTCCATTTCTCTTTGCATTTCCATGCATTCATCTTGTATTTGCAGTAGTCTATTTTCACCCTTTATATATTTGTAATAATTGATCCATCATGCATGATTTTTCATATACATATAATCATAGTTATCTTCTATAATTTAGGTATGTTAAAAGTCGAAGTGATGAGCAATTGAGGAGTCCTAAGGGAGAGAACTCAGTAAGTGCTTGTAAGCCTGAAGATACTGCAAATAACAGGTCAATTGTACCTTGTGGTCTCATAGCTTGGAGTTTATTCAATGACACATACAGCTTCTCCGTCAACAATACAAATTTGACGGTGAACAAGAAAGGCATCTCCTGGAAGAGTGATAGGGAGCACAAATTTGGAAAAGATGTTTTTCCCAAAAACTTCCAGAATGGTTCTATAATAGGTGGCGCACATCTTAATGAATCGATACCGGTAAGTAGCTTCATGATGTCTTGTTTTGATGAGTTAGTTTCTATTTTCATGTATACTTATCTCTCTTCACAAGGCTCAGCTATAATGTTTTAACCTCTATAACACTGACACTTCAAAATGAAGGTGTGTCTAGTGTCTGACATGACACTGACATGTTATTACATTTAATTAATTCATTTTCTCAGATTATTACCAGTGTCAGTGTTTCATATTTTATGGGTATTACTCATATTGTACATATAGAAATGACTTTTCACATGGAAATTTATGTGCCAAACACCTTTTTCATCTTAAACTTTCAATAACTTCCAATATTTATTTTGTTCACCATGCTCACCTTTTGAATATTTTATGGAACAGTTGAATGAGCAGGAGGATCTTATTGTCTGGATGAGAACCGCTGCCTTACCAACTTTTAGGAAGTTATATGGAAAGATAGAGGTGGATTTGAATCAAGGTGACCTCATAGATGTAACACTTGAAAATAACTATAACACATACAGTTTCAATGGCAAGAAAAAGCTCGTACTGTCTACTACTAGCTGGCTTGGTGGGAAGAATGATTTCCTTGGCATTGCTTATCTCACTGTTGGAGGATTATGCTTCTTTTTATCGTTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGTACGTACTTGCATTCTCTATTTGCTTTTAGACTATACAAGTTCCTTTTGAAACAGCGCAAATTCATGTGCTTCTACATTTTTTTTGCTTGATCAGTGTTGAATGCATTTCTTTGCTGCATAAATTAGCACAGGGAACATTGTATATTAGGCCTAACATTTAAAATTTCAATCCATTCACCCGTTTTAACCCTGAAATTGGCATTTATTATATTTGTCAATTTGATTAGAATCTAAATATTAGAGTGACTTTTATTTTATGTAGCCGATTGGCTGATTCTGAAATTAAATTACTAATACCTTTCTTTATAAGCTCCCTTTAGTGAGTCTGCAGTCTGCACATAGTTTAGAGATTAATGATAAAAAAAAAAAAAAAAAACTGTGGCTTGAAGTTGCTGTGAGGTCTATGTTGCATAGGTATGGGTACGGTACCCAGTACGATATGGGTACCGGTACGAGAATACGGTAATTTTAAAAAATGAAGAGCACGGGTACGTCAATAAAATCATGAGTTTTGTTATATAATACAACATGAGAAAGCTAAATTCTTCAACTTACAACAAAATCATCACAATAAAAGTTTAAAAAGTCGAAAAAGTATAGTTGGTTACAACAACAAAAAAACTCACATGCACATATAATACTACATTAACATGTTAATATATAAGAGAAAGCCACAATTTTCACCCACAATAGAATGATGAGCAAAAATGCATACCCGGTACGGGTACTTCATATTTTTACAAGTACCCATGCTTCAGAGTGTGAGGTTCTTGTGTTAACAAGATTTATTGAGCTCAGATACTATCCTGCATCAGCAGACAGATGCAGCCGAGAGATCAATGCTCTCAGCCGTTGTATGAATCCAATAGCCGACCTCTGGCTGCATTGGCAGTCAAGGCAAGAGAGGATCTTGATACACATTATGCATTTTTTCTAATATGTCCATTGTATAATTTAAATTTTATTGATATTTTTTATTTTATTTTTTAAAATAGGAGAATGCTGTTGTATTAGTTGTTATGTTGGGGATATATATTTTCCTTCACCGGGGTTTGAACCCGGTCCTTTAACTCTTTCAACTCCTTTAAATCTCAGAACAGTTTGTTTCAGACTTTCTATGCTTTTCTCGTTAGCTAAAAACGATTTCTGGAAATCAAATTCTCTGTTTCTTCAACAGCCACTTGAAGTGGTTGTTTTGAATTGTTATTGTTAGTTCCTAATCCTAACCTATTTTTCATTCTTTGTAGGCAACTTGGAGATCCATCATATTTGTCATGGAATAGGAACCAAGGAGGGCAGTAA

Protein sequence

>MS.gene066196.t1

MESCMPMDNSKFTQQELPACKPILTPRAVISAFLLVSVVFIPIGVASLMASRKVVEIVYGYESDCLPDGTKDEVAYIQSPETDKTCNITLNVTKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRSPKGENSVSACKPEDTANNRSIVPCGLIAWSLFNDTYSFSVNNTNLTVNKKGISWKSDREHKFGKDVFPKNFQNGSIIGGAHLNESIPLNEQEDLIVWMRTAALPTFRKLYGKIEVDLNQGDLIDVTLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLSLAFTIVYFVKPRQLGDPSYLSWNRNQGGQ