AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41334

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41334.t1 MTR_1g047990 96.884 353 11 0 1 353 1 353 0.0 693
MS.gene41334.t1 MTR_6g079650 57.609 92 38 1 260 350 9 100 8.78e-32 115
MS.gene41334.t1 MTR_4g104680 36.500 200 116 7 16 213 4 194 4.65e-22 97.8
MS.gene41334.t1 MTR_3g086590 35.938 128 80 1 78 203 61 188 7.39e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41334.t1 AT4G26500 71.525 295 71 4 69 350 77 371 3.34e-138 397
MS.gene41334.t1 AT1G55805 71.591 88 24 1 263 349 68 155 8.69e-40 138
MS.gene41334.t1 AT1G67810 31.429 175 113 3 40 208 35 208 1.91e-16 78.6
MS.gene41334.t1 AT5G50210 32.812 192 124 4 24 213 35 223 7.84e-15 76.3

Find 94 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAGATGAGTTGGATTC+TGG 0.176580 1.2:+31067014 MS.gene41334:CDS
CCAAGTTTAGGTGTTGATTT+TGG 0.250352 1.2:+31066756 MS.gene41334:CDS
GAAGAGAAGCTGTTCGTATT+TGG 0.258831 1.2:-31066310 None:intergenic
TTAACCCCTTCTAGAAATAA+TGG 0.260107 1.2:+31066585 MS.gene41334:CDS
GAAGAGGGAAAGTGAGAATT+TGG 0.282002 1.2:-31066079 None:intergenic
AGCTGTTCGTATTTGGCTTT+GGG 0.314164 1.2:-31066303 None:intergenic
AAGCTGTTCGTATTTGGCTT+TGG 0.330510 1.2:-31066304 None:intergenic
AAGGTTGTGTCTCTCAGGTT+TGG 0.339683 1.2:+31066391 MS.gene41334:CDS
CCCAAGATGCATTACAAAAT+CGG 0.341009 1.2:-31066550 None:intergenic
TTTACGATTTCTTGAAGCTT+TGG 0.349699 1.2:-31066258 None:intergenic
CCTTCTGTGACCCCAAGTTT+AGG 0.359965 1.2:+31066744 MS.gene41334:CDS
AGGGAGAGGGAAGAGGATAA+AGG 0.373167 1.2:+31066812 MS.gene41334:CDS
CTCGCTGCTTTACTCGTTCA+AGG 0.382796 1.2:+31066486 MS.gene41334:CDS
AGAGTTTCAAGGGAAGAGTT+TGG 0.384288 1.2:+31066962 MS.gene41334:CDS
TAACCCCTTCTAGAAATAAT+GGG 0.387357 1.2:+31066586 MS.gene41334:CDS
AGGTTGTGTCTCTCAGGTTT+GGG 0.389742 1.2:+31066392 MS.gene41334:CDS
GCTTTATGTGGAAGCTGAAA+AGG 0.396625 1.2:+31066650 MS.gene41334:CDS
TGATGACGAGAATGTTGAAT+TGG 0.400400 1.2:+31066788 MS.gene41334:CDS
TGGGAGTGATTGGAAGGTGA+TGG 0.400836 1.2:-31066160 None:intergenic
GCTGGACATGCTGGTGTTAG+AGG 0.402189 1.2:+31066897 MS.gene41334:CDS
ACCTGGATAATTTCATTAAC+GGG 0.402796 1.2:-31066522 None:intergenic
CGTTGTCTATGAAGCTGATT+CGG 0.403821 1.2:+31066443 MS.gene41334:CDS
CTTTGGGTTCTTGCACGGAT+TGG 0.404849 1.2:-31066287 None:intergenic
AAGGGAAGAGTTTGGTTAAG+AGG 0.410584 1.2:+31066970 MS.gene41334:CDS
ATTGGGATTCGAGGGGTTTG+AGG 0.413363 1.2:-31066344 None:intergenic
TCTTCAACTTCCAACTCAAT+AGG 0.421778 1.2:-31066858 None:intergenic
GGTTTGGGTCCGAGCCTACT+TGG 0.423534 1.2:+31066407 MS.gene41334:CDS
GACCTGGATAATTTCATTAA+CGG 0.427963 1.2:-31066523 None:intergenic
ACTTCTGAATCTGACTCAAT+TGG 0.431624 1.2:+31066675 MS.gene41334:CDS
CCAAAATCAACACCTAAACT+TGG 0.437746 1.2:-31066756 None:intergenic
GGGAGTGATTGGAAGGTGAT+GGG 0.438845 1.2:-31066159 None:intergenic
AAAAGCACTTATGCTTTATG+TGG 0.444787 1.2:+31066638 MS.gene41334:CDS
TTCGATGGGTTGAAGGGAAG+TGG 0.449871 1.2:-31066226 None:intergenic
GGAGTTCTTCGATGGGTTGA+AGG 0.449918 1.2:-31066233 None:intergenic
AATTGGGAGGGAGAGGGAAG+AGG 0.450448 1.2:+31066805 MS.gene41334:CDS
GAAAGAGAAGAGGGTGTTTG+TGG 0.454312 1.2:-31066133 None:intergenic
AAAACCCATTATTTCTAGAA+GGG 0.455596 1.2:-31066590 None:intergenic
TGAACATGAAGAAAGGGAAT+TGG 0.456159 1.2:-31066040 None:intergenic
GTGGTTTCTAAAGAGTTTCA+AGG 0.456838 1.2:+31066951 MS.gene41334:CDS
CTTTGGAGGGAGTTCTTCGA+TGG 0.457099 1.2:-31066241 None:intergenic
TAGCTTGCTTCAAGATGAGT+TGG 0.460976 1.2:+31067007 MS.gene41334:CDS
AGTCGAAGGTTGTGTCTCTC+AGG 0.465822 1.2:+31066386 MS.gene41334:CDS
AAAGAGAAGAGGGTGTTTGT+GGG 0.468262 1.2:-31066132 None:intergenic
GGAACTTCAGCCTATTGAGT+TGG 0.469218 1.2:+31066848 MS.gene41334:CDS
ATCGAAATGAACATGAAGAA+AGG 0.469710 1.2:-31066047 None:intergenic
GATGATGATGATGGTGGTGG+TGG 0.473775 1.2:-31066189 None:intergenic
TTTGGCTTTGGGTTCTTGCA+CGG 0.474908 1.2:-31066292 None:intergenic
CGGATTCTGTTCTCACCAAA+GGG 0.484901 1.2:+31066463 MS.gene41334:CDS
ACGATTTCTTGAAGCTTTGG+AGG 0.485000 1.2:-31066255 None:intergenic
CCAAGATGCATTACAAAATC+GGG 0.485227 1.2:-31066549 None:intergenic
GACACATTTCAATGTTAAAG+TGG 0.486500 1.2:+31066932 MS.gene41334:CDS
AATGTTGAATTGGGAGGGAG+AGG 0.486652 1.2:+31066798 MS.gene41334:CDS
TACGAACAGCTTCTCTTCTA+CGG 0.489334 1.2:+31066315 MS.gene41334:CDS
TCGGATTCTGTTCTCACCAA+AGG 0.495251 1.2:+31066462 MS.gene41334:CDS
GATGACGAGAATGTTGAATT+GGG 0.497878 1.2:+31066789 MS.gene41334:CDS
GATAAAGGAAAAGCTTGAAA+AGG 0.498122 1.2:+31066827 MS.gene41334:CDS
ACCGACTTCAGAAGGCGTCT+TGG 0.500732 1.2:-31067060 None:intergenic
AGAGTTTGGTTAAGAGGCAT+AGG 0.503534 1.2:+31066976 MS.gene41334:CDS
TGAAGGGAAGTGGATGGAAG+TGG 0.504888 1.2:-31066216 None:intergenic
CTTTATGTGGAAGCTGAAAA+GGG 0.506897 1.2:+31066651 MS.gene41334:CDS
TTACAAAATCGGGTGTGACC+TGG 0.509018 1.2:-31066539 None:intergenic
CATCCTTCACCGACTTCAGA+AGG 0.509950 1.2:-31067068 None:intergenic
TCGAAATGAACATGAAGAAA+GGG 0.512101 1.2:-31066046 None:intergenic
GTTCTTGCACGGATTGGAAG+AGG 0.512154 1.2:-31066281 None:intergenic
CAAAATCAACACCTAAACTT+GGG 0.519100 1.2:-31066755 None:intergenic
TATCAACATGCTGGACATGC+TGG 0.527867 1.2:+31066888 MS.gene41334:CDS
ACATGAAGAAAGGGAATTGG+TGG 0.538024 1.2:-31066037 None:intergenic
TGGGTCCGAGCCTACTTGGA+TGG 0.540763 1.2:+31066411 MS.gene41334:CDS
GAGTAAAGCAGCGAGCCCTT+TGG 0.541289 1.2:-31066478 None:intergenic
ATGTTGAATTGGGAGGGAGA+GGG 0.542038 1.2:+31066799 MS.gene41334:CDS
AAACCCATTATTTCTAGAAG+GGG 0.542885 1.2:-31066589 None:intergenic
GATGGGTTTGAAAGAGAAGA+GGG 0.545338 1.2:-31066142 None:intergenic
ACCCGTTAATGAAATTATCC+AGG 0.545924 1.2:+31066521 MS.gene41334:CDS
CCTAAACTTGGGGTCACAGA+AGG 0.548902 1.2:-31066744 None:intergenic
CGATTTCTTGAAGCTTTGGA+GGG 0.549690 1.2:-31066254 None:intergenic
ATGGGTTGAAGGGAAGTGGA+TGG 0.556200 1.2:-31066222 None:intergenic
AGCTTTGTTGAGAATTCAAG+TGG 0.556883 1.2:+31066720 MS.gene41334:CDS
GTTTCTTTCACCATCCAAGT+AGG 0.562090 1.2:-31066421 None:intergenic
ACGAGAATGTTGAATTGGGA+GGG 0.562350 1.2:+31066793 MS.gene41334:CDS
GCCAAGACGCCTTCTGAAGT+CGG 0.570403 1.2:+31067059 MS.gene41334:CDS
TGGTTTCTAAAGAGTTTCAA+GGG 0.574771 1.2:+31066952 MS.gene41334:CDS
TGATGGGTTTGAAAGAGAAG+AGG 0.578500 1.2:-31066143 None:intergenic
TTTCACCATCCAAGTAGGCT+CGG 0.579472 1.2:-31066416 None:intergenic
GAGTTCTTCGATGGGTTGAA+GGG 0.581123 1.2:-31066232 None:intergenic
ACGCCTTCTGAAGTCGGTGA+AGG 0.585013 1.2:+31067065 MS.gene41334:CDS
TTTGGAGGGAGTTCTTCGAT+GGG 0.593786 1.2:-31066240 None:intergenic
GATGTGTCTTATCAACATGC+TGG 0.597053 1.2:+31066879 MS.gene41334:CDS
AACATTCTCGTCATCAACCT+CGG 0.597911 1.2:-31066781 None:intergenic
CTGGACATGCTGGTGTTAGA+GGG 0.601848 1.2:+31066898 MS.gene41334:CDS
ACTAAAGACAACAAAGTCGA+AGG 0.628037 1.2:+31066372 MS.gene41334:CDS
AAAATCAACACCTAAACTTG+GGG 0.630526 1.2:-31066754 None:intergenic
CTAAACTTGGGGTCACAGAA+GGG 0.633009 1.2:-31066743 None:intergenic
GACGAGAATGTTGAATTGGG+AGG 0.654890 1.2:+31066792 MS.gene41334:CDS
GCTGGTGTTAGAGGGAGCGA+TGG 0.680792 1.2:+31066906 MS.gene41334:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTCTTTAGTTTTAAATT+GGG - chr1.2:31066364-31066383 None:intergenic 20.0%
!!! TGTTGTCTTTAGTTTTAAAT+TGG - chr1.2:31066365-31066384 None:intergenic 20.0%
!!! AAAAACCCATTATTTCTAGA+AGG - chr1.2:31066594-31066613 None:intergenic 25.0%
!!! AAAACCCATTATTTCTAGAA+GGG - chr1.2:31066593-31066612 None:intergenic 25.0%
!!! AGAGTTATTTTTGTTGAAGA+GGG - chr1.2:31066097-31066116 None:intergenic 25.0%
!!! TAGAGTTATTTTTGTTGAAG+AGG - chr1.2:31066098-31066117 None:intergenic 25.0%
AAAATCAACACCTAAACTTG+GGG - chr1.2:31066757-31066776 None:intergenic 30.0%
ACCTGGATAATTTCATTAAC+GGG - chr1.2:31066525-31066544 None:intergenic 30.0%
ATCGAAATGAACATGAAGAA+AGG - chr1.2:31066050-31066069 None:intergenic 30.0%
CAAAATCAACACCTAAACTT+GGG - chr1.2:31066758-31066777 None:intergenic 30.0%
GACACATTTCAATGTTAAAG+TGG + chr1.2:31066932-31066951 MS.gene41334:CDS 30.0%
GACCTGGATAATTTCATTAA+CGG - chr1.2:31066526-31066545 None:intergenic 30.0%
GATAAAGGAAAAGCTTGAAA+AGG + chr1.2:31066827-31066846 MS.gene41334:CDS 30.0%
TCGAAATGAACATGAAGAAA+GGG - chr1.2:31066049-31066068 None:intergenic 30.0%
TTTACGATTTCTTGAAGCTT+TGG - chr1.2:31066261-31066280 None:intergenic 30.0%
! TAACCCCTTCTAGAAATAAT+GGG + chr1.2:31066586-31066605 MS.gene41334:CDS 30.0%
! TGGTTTCTAAAGAGTTTCAA+GGG + chr1.2:31066952-31066971 MS.gene41334:CDS 30.0%
! TTAACCCCTTCTAGAAATAA+TGG + chr1.2:31066585-31066604 MS.gene41334:CDS 30.0%
!! AAAAGCACTTATGCTTTATG+TGG + chr1.2:31066638-31066657 MS.gene41334:CDS 30.0%
!! AAACCCATTATTTCTAGAAG+GGG - chr1.2:31066592-31066611 None:intergenic 30.0%
!!! AGTTTTAAATTGGGATTCGA+GGG - chr1.2:31066355-31066374 None:intergenic 30.0%
!!! TAGTTTTAAATTGGGATTCG+AGG - chr1.2:31066356-31066375 None:intergenic 30.0%
ACCCGTTAATGAAATTATCC+AGG + chr1.2:31066521-31066540 MS.gene41334:CDS 35.0%
ACTAAAGACAACAAAGTCGA+AGG + chr1.2:31066372-31066391 MS.gene41334:CDS 35.0%
ACTTCTGAATCTGACTCAAT+TGG + chr1.2:31066675-31066694 MS.gene41334:CDS 35.0%
CCAAAATCAACACCTAAACT+TGG - chr1.2:31066759-31066778 None:intergenic 35.0%
CCAAGATGCATTACAAAATC+GGG - chr1.2:31066552-31066571 None:intergenic 35.0%
CCCAAGATGCATTACAAAAT+CGG - chr1.2:31066553-31066572 None:intergenic 35.0%
CTTTATGTGGAAGCTGAAAA+GGG + chr1.2:31066651-31066670 MS.gene41334:CDS 35.0%
GATGACGAGAATGTTGAATT+GGG + chr1.2:31066789-31066808 MS.gene41334:CDS 35.0%
TCTTCAACTTCCAACTCAAT+AGG - chr1.2:31066861-31066880 None:intergenic 35.0%
TGAACATGAAGAAAGGGAAT+TGG - chr1.2:31066043-31066062 None:intergenic 35.0%
! CCGATTTTGTAATGCATCTT+GGG + chr1.2:31066550-31066569 MS.gene41334:CDS 35.0%
! GTGGTTTCTAAAGAGTTTCA+AGG + chr1.2:31066951-31066970 MS.gene41334:CDS 35.0%
! TGATGACGAGAATGTTGAAT+TGG + chr1.2:31066788-31066807 MS.gene41334:CDS 35.0%
!! AGCTTTGTTGAGAATTCAAG+TGG + chr1.2:31066720-31066739 MS.gene41334:CDS 35.0%
!! GTTTTAAATTGGGATTCGAG+GGG - chr1.2:31066354-31066373 None:intergenic 35.0%
!!! CCAAGTTTAGGTGTTGATTT+TGG + chr1.2:31066756-31066775 MS.gene41334:CDS 35.0%
AACATTCTCGTCATCAACCT+CGG - chr1.2:31066784-31066803 None:intergenic 40.0%
AAGGGAAGAGTTTGGTTAAG+AGG + chr1.2:31066970-31066989 MS.gene41334:CDS 40.0%
ACATGAAGAAAGGGAATTGG+TGG - chr1.2:31066040-31066059 None:intergenic 40.0%
ACGAGAATGTTGAATTGGGA+GGG + chr1.2:31066793-31066812 MS.gene41334:CDS 40.0%
AGAGTTTCAAGGGAAGAGTT+TGG + chr1.2:31066962-31066981 MS.gene41334:CDS 40.0%
CGTTGTCTATGAAGCTGATT+CGG + chr1.2:31066443-31066462 MS.gene41334:CDS 40.0%
GAAGAGAAGCTGTTCGTATT+TGG - chr1.2:31066313-31066332 None:intergenic 40.0%
GAAGAGGGAAAGTGAGAATT+TGG - chr1.2:31066082-31066101 None:intergenic 40.0%
GATGTGTCTTATCAACATGC+TGG + chr1.2:31066879-31066898 MS.gene41334:CDS 40.0%
GCTTTATGTGGAAGCTGAAA+AGG + chr1.2:31066650-31066669 MS.gene41334:CDS 40.0%
GTTTCTTTCACCATCCAAGT+AGG - chr1.2:31066424-31066443 None:intergenic 40.0%
TACGAACAGCTTCTCTTCTA+CGG + chr1.2:31066315-31066334 MS.gene41334:CDS 40.0%
! AAGCTGTTCGTATTTGGCTT+TGG - chr1.2:31066307-31066326 None:intergenic 40.0%
! ACGATTTCTTGAAGCTTTGG+AGG - chr1.2:31066258-31066277 None:intergenic 40.0%
! AGAGTTTGGTTAAGAGGCAT+AGG + chr1.2:31066976-31066995 MS.gene41334:CDS 40.0%
! AGTGGTGATGATGATGATGA+TGG - chr1.2:31066201-31066220 None:intergenic 40.0%
! CCCGATTTTGTAATGCATCT+TGG + chr1.2:31066549-31066568 MS.gene41334:CDS 40.0%
! CTTCAAGATGAGTTGGATTC+TGG + chr1.2:31067014-31067033 MS.gene41334:CDS 40.0%
! GATGGGTTTGAAAGAGAAGA+GGG - chr1.2:31066145-31066164 None:intergenic 40.0%
! TTACTCGTTCAAGGCTTTTC+AGG + chr1.2:31066495-31066514 MS.gene41334:CDS 40.0%
! TTTTGTTGGGAGTGATTGGA+AGG - chr1.2:31066169-31066188 None:intergenic 40.0%
!! AAAGAGAAGAGGGTGTTTGT+GGG - chr1.2:31066135-31066154 None:intergenic 40.0%
!! AGCTGTTCGTATTTGGCTTT+GGG - chr1.2:31066306-31066325 None:intergenic 40.0%
!! CGATTTCTTGAAGCTTTGGA+GGG - chr1.2:31066257-31066276 None:intergenic 40.0%
!! TAGCTTGCTTCAAGATGAGT+TGG + chr1.2:31067007-31067026 MS.gene41334:CDS 40.0%
!! TGATGGGTTTGAAAGAGAAG+AGG - chr1.2:31066146-31066165 None:intergenic 40.0%
AAGGTTGTGTCTCTCAGGTT+TGG + chr1.2:31066391-31066410 MS.gene41334:CDS 45.0%
AATGTTGAATTGGGAGGGAG+AGG + chr1.2:31066798-31066817 MS.gene41334:CDS 45.0%
AGGTTGTGTCTCTCAGGTTT+GGG + chr1.2:31066392-31066411 MS.gene41334:CDS 45.0%
ATGTTGAATTGGGAGGGAGA+GGG + chr1.2:31066799-31066818 MS.gene41334:CDS 45.0%
CGGATTCTGTTCTCACCAAA+GGG + chr1.2:31066463-31066482 MS.gene41334:CDS 45.0%
CTAAACTTGGGGTCACAGAA+GGG - chr1.2:31066746-31066765 None:intergenic 45.0%
GACGAGAATGTTGAATTGGG+AGG + chr1.2:31066792-31066811 MS.gene41334:CDS 45.0%
GGAACTTCAGCCTATTGAGT+TGG + chr1.2:31066848-31066867 MS.gene41334:CDS 45.0%
TATCAACATGCTGGACATGC+TGG + chr1.2:31066888-31066907 MS.gene41334:CDS 45.0%
TCGGATTCTGTTCTCACCAA+AGG + chr1.2:31066462-31066481 MS.gene41334:CDS 45.0%
TTACAAAATCGGGTGTGACC+TGG - chr1.2:31066542-31066561 None:intergenic 45.0%
TTTCACCATCCAAGTAGGCT+CGG - chr1.2:31066419-31066438 None:intergenic 45.0%
TTTGGAGGGAGTTCTTCGAT+GGG - chr1.2:31066243-31066262 None:intergenic 45.0%
!! GAAAGAGAAGAGGGTGTTTG+TGG - chr1.2:31066136-31066155 None:intergenic 45.0%
!! GAGTTCTTCGATGGGTTGAA+GGG - chr1.2:31066235-31066254 None:intergenic 45.0%
!! GATGATGATGATGATGGTGG+TGG - chr1.2:31066195-31066214 None:intergenic 45.0%
!! GGTGATGATGATGATGATGG+TGG - chr1.2:31066198-31066217 None:intergenic 45.0%
!! TTTGGCTTTGGGTTCTTGCA+CGG - chr1.2:31066295-31066314 None:intergenic 45.0%
!!! AGGTGTTGATTTTGGTTCCG+AGG + chr1.2:31066764-31066783 MS.gene41334:CDS 45.0%
!!! ATGGTGGTGGTGGTTTTGTT+GGG - chr1.2:31066182-31066201 None:intergenic 45.0%
!!! GTGGTTTTGTTGGGAGTGAT+TGG - chr1.2:31066173-31066192 None:intergenic 45.0%
AGGGAGAGGGAAGAGGATAA+AGG + chr1.2:31066812-31066831 MS.gene41334:CDS 50.0%
AGTCGAAGGTTGTGTCTCTC+AGG + chr1.2:31066386-31066405 MS.gene41334:CDS 50.0%
ATTGGGATTCGAGGGGTTTG+AGG - chr1.2:31066347-31066366 None:intergenic 50.0%
CCTAAACTTGGGGTCACAGA+AGG - chr1.2:31066747-31066766 None:intergenic 50.0%
CCTTCTGTGACCCCAAGTTT+AGG + chr1.2:31066744-31066763 MS.gene41334:CDS 50.0%
GGGAGTGATTGGAAGGTGAT+GGG - chr1.2:31066162-31066181 None:intergenic 50.0%
TGAAGGGAAGTGGATGGAAG+TGG - chr1.2:31066219-31066238 None:intergenic 50.0%
TGGGAGTGATTGGAAGGTGA+TGG - chr1.2:31066163-31066182 None:intergenic 50.0%
! ATGGGTTGAAGGGAAGTGGA+TGG - chr1.2:31066225-31066244 None:intergenic 50.0%
! CTCGCTGCTTTACTCGTTCA+AGG + chr1.2:31066486-31066505 MS.gene41334:CDS 50.0%
! CTGGACATGCTGGTGTTAGA+GGG + chr1.2:31066898-31066917 MS.gene41334:CDS 50.0%
! CTTTGGAGGGAGTTCTTCGA+TGG - chr1.2:31066244-31066263 None:intergenic 50.0%
! CTTTGGGTTCTTGCACGGAT+TGG - chr1.2:31066290-31066309 None:intergenic 50.0%
!! CATCCTTCACCGACTTCAGA+AGG - chr1.2:31067071-31067090 None:intergenic 50.0%
!! GATGATGATGATGGTGGTGG+TGG - chr1.2:31066192-31066211 None:intergenic 50.0%
!! GGAGTTCTTCGATGGGTTGA+AGG - chr1.2:31066236-31066255 None:intergenic 50.0%
!! GTTCTTGCACGGATTGGAAG+AGG - chr1.2:31066284-31066303 None:intergenic 50.0%
!! TTCGATGGGTTGAAGGGAAG+TGG - chr1.2:31066229-31066248 None:intergenic 50.0%
!!! GATGGTGGTGGTGGTTTTGT+TGG - chr1.2:31066183-31066202 None:intergenic 50.0%
AATTGGGAGGGAGAGGGAAG+AGG + chr1.2:31066805-31066824 MS.gene41334:CDS 55.0%
GAGTAAAGCAGCGAGCCCTT+TGG - chr1.2:31066481-31066500 None:intergenic 55.0%
! GCTGGACATGCTGGTGTTAG+AGG + chr1.2:31066897-31066916 MS.gene41334:CDS 55.0%
!! ACCGACTTCAGAAGGCGTCT+TGG - chr1.2:31067063-31067082 None:intergenic 55.0%
!! ACGCCTTCTGAAGTCGGTGA+AGG + chr1.2:31067065-31067084 MS.gene41334:CDS 55.0%
!! GCCAAGACGCCTTCTGAAGT+CGG + chr1.2:31067059-31067078 MS.gene41334:CDS 55.0%
GGTTTGGGTCCGAGCCTACT+TGG + chr1.2:31066407-31066426 MS.gene41334:CDS 60.0%
TGGGTCCGAGCCTACTTGGA+TGG + chr1.2:31066411-31066430 MS.gene41334:CDS 60.0%
! GCTGGTGTTAGAGGGAGCGA+TGG + chr1.2:31066906-31066925 MS.gene41334:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 31066030 31067091 31066030 ID=MS.gene41334
chr1.2 mRNA 31066030 31067091 31066030 ID=MS.gene41334.t1;Parent=MS.gene41334
chr1.2 exon 31066030 31067091 31066030 ID=MS.gene41334.t1.exon1;Parent=MS.gene41334.t1
chr1.2 CDS 31066030 31067091 31066030 ID=cds.MS.gene41334.t1;Parent=MS.gene41334.t1
Gene Sequence

>MS.gene41334

ATGATGTCCACCAATTCCCTTTCTTCATGTTCATTTCGATTATTCACAACCAAATTCTCACTTTCCCTCTTCAACAAAAATAACTCTAATTTCTTCATTAAACCCACAAACACCCTCTTCTCTTTCAAACCCATCACCTTCCAATCACTCCCAACAAAACCACCACCACCATCATCATCATCATCACCACTTCCATCCACTTCCCTTCAACCCATCGAAGAACTCCCTCCAAAGCTTCAAGAAATCGTAAACCTCTTCCAATCCGTGCAAGAACCCAAAGCCAAATACGAACAGCTTCTCTTCTACGGCAAAAACCTCAAACCCCTCGAATCCCAATTTAAAACTAAAGACAACAAAGTCGAAGGTTGTGTCTCTCAGGTTTGGGTCCGAGCCTACTTGGATGGTGAAAGAAACGTTGTCTATGAAGCTGATTCGGATTCTGTTCTCACCAAAGGGCTCGCTGCTTTACTCGTTCAAGGCTTTTCAGGTCGACCCGTTAATGAAATTATCCAGGTCACACCCGATTTTGTAATGCATCTTGGGTTGCAACAGAGTTTAACCCCTTCTAGAAATAATGGGTTTTTGAATATGCTCAAATTAATGCAGAAAAAAGCACTTATGCTTTATGTGGAAGCTGAAAAGGGTACTTCTGAATCTGACTCAATTGGAAATTCTGATTTCAAAAATGATAGCTTTGTTGAGAATTCAAGTGGCCCTTCTGTGACCCCAAGTTTAGGTGTTGATTTTGGTTCCGAGGTTGATGACGAGAATGTTGAATTGGGAGGGAGAGGGAAGAGGATAAAGGAAAAGCTTGAAAAGGAACTTCAGCCTATTGAGTTGGAAGTTGAAGATGTGTCTTATCAACATGCTGGACATGCTGGTGTTAGAGGGAGCGATGGTGAGACACATTTCAATGTTAAAGTGGTTTCTAAAGAGTTTCAAGGGAAGAGTTTGGTTAAGAGGCATAGGCTTATTTATAGCTTGCTTCAAGATGAGTTGGATTCTGGACTTCATGCTTTGTCTATTGTTGCCAAGACGCCTTCTGAAGTCGGTGAAGGATGA
Protein sequence

>MS.gene41334.t1

MMSTNSLSSCSFRLFTTKFSLSLFNKNNSNFFIKPTNTLFSFKPITFQSLPTKPPPPSSSSSPLPSTSLQPIEELPPKLQEIVNLFQSVQEPKAKYEQLLFYGKNLKPLESQFKTKDNKVEGCVSQVWVRAYLDGERNVVYEADSDSVLTKGLAALLVQGFSGRPVNEIIQVTPDFVMHLGLQQSLTPSRNNGFLNMLKLMQKKALMLYVEAEKGTSESDSIGNSDFKNDSFVENSSGPSVTPSLGVDFGSEVDDENVELGGRGKRIKEKLEKELQPIELEVEDVSYQHAGHAGVRGSDGETHFNVKVVSKEFQGKSLVKRHRLIYSLLQDELDSGLHALSIVAKTPSEVGEG