AlfalfaGEDB | MS.gene44440

M. sativa cultivar XinJiangDaYe / MS.gene44440

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44440.t1	AFK36857.1	91.2	91	8	0	1	91	1	91	7.30E-39	169.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44440.t1	G7JF90	91.2	91	8	0	1	91	1	91	5.3e-39	169.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene44440	0.811065	8.43E-51	-1.69E-46
MS.gene049171	MS.gene44440	0.906022	2.31E-80	-1.69E-46
MS.gene04921	MS.gene44440	-0.811977	5.34E-51	-1.69E-46
MS.gene049217	MS.gene44440	0.806232	9.09E-50	-1.69E-46
MS.gene049222	MS.gene44440	0.870833	1.08E-66	-1.69E-46
MS.gene049232	MS.gene44440	0.80961	1.74E-50	-1.69E-46
MS.gene049257	MS.gene44440	0.854786	9.76E-62	-1.69E-46
MS.gene049285	MS.gene44440	0.856507	3.07E-62	-1.69E-46
MS.gene049320	MS.gene44440	0.832367	9.84E-56	-1.69E-46
MS.gene049373	MS.gene44440	0.803775	2.97E-49	-1.69E-46

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44440.t1	MTR_4g097500	91.209	91	8	0	1	91	1	91	3.51e-57	176

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 21 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCTTCAAATCTTCATTCAT+CGG	0.522192	8.1:-25111473	MS.gene44440:CDS
AGAAAGAAGTCGTTTGTTTC+GGG	0.362238	8.1:+25111448	None:intergenic
AGATCTTTGGGATCAGGAAC+AGG	0.458429	8.1:-25111330	None:intergenic
AGGGGTAAGTGTGTGAATTC+GGG	0.243170	8.1:+25111528	None:intergenic
CAGAAAGAAGTCGTTTGTTT+CGG	0.314726	8.1:+25111447	None:intergenic
CCCACTGTTGCAGAGAATCT+AGG	0.472919	8.1:-25111398	MS.gene44440:CDS
CCTAGATTCTCTGCAACAGT+GGG	0.622553	8.1:+25111398	None:intergenic
CTGTCATGTTCAAAGATCTT+TGG	0.216394	8.1:-25111343	MS.gene44440:CDS
GAGGGGTAAGTGTGTGAATT+CGG	0.256228	8.1:+25111527	None:intergenic
GATTTGAAGGTATTAGATTT+TGG	0.154519	8.1:+25111485	None:intergenic

Showing 1 to 10 of 21 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACCTTCAAATCTTCATTCAT+CGG	-	chr8.1:25111439-25111458	MS.gene44440:CDS	30.0%
TGTCATGTTCAAAGATCTTT+GGG	-	chr8.1:25111570-25111589	MS.gene44440:CDS	30.0%
AGAAAGAAGTCGTTTGTTTC+GGG	+	chr8.1:25111467-25111486	None:intergenic	35.0%
CAGAAAGAAGTCGTTTGTTT+CGG	+	chr8.1:25111468-25111487	None:intergenic	35.0%
CTGTCATGTTCAAAGATCTT+TGG	-	chr8.1:25111569-25111588	MS.gene44440:CDS	35.0%
GCCGATGAATGAAGATTTGA+AGG	+	chr8.1:25111443-25111462	None:intergenic	40.0%
GGTGTGATAGATGGATGAAA+AGG	+	chr8.1:25111364-25111383	None:intergenic	40.0%
AGGGGTAAGTGTGTGAATTC+GGG	+	chr8.1:25111387-25111406	None:intergenic	45.0%
CCTAGATTCTCTGCAACAGT+GGG	+	chr8.1:25111517-25111536	None:intergenic	45.0%
GAGGGGTAAGTGTGTGAATT+CGG	+	chr8.1:25111388-25111407	None:intergenic	45.0%

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	25111331	25111603	25111331	ID=MS.gene44440
chr8.1	mRNA	25111331	25111603	25111331	ID=MS.gene44440.t1;Parent=MS.gene44440
chr8.1	exon	25111331	25111603	25111331	ID=MS.gene44440.t1.exon1;Parent=MS.gene44440.t1
chr8.1	CDS	25111331	25111603	25111331	ID=cds.MS.gene44440.t1;Parent=MS.gene44440.t1

Gene Sequence	>MS.gene44440 ATGGCAACAACTCTACAATCTCTTCGATTTCCTTTTCATCCATCTATCACACCCCCGAATTCACACACTTACCCCTCCTCTACCATTCACTACACCCCAAAATCTAATACCTTCAAATCTTCATTCATCGGCACCCGAAACAAACGACTTCTTTCTGCTAGAGCTTCGAGTTCACAGTATAGTCCCACTGTTGCAGAGAATCTAGGCGATGTTAGTATTTTCACTGCTGCTGGGGAATCTGTCATGTTCAAAGATCTTTGGGATCAGGAACAG
Protein sequence	>MS.gene44440.t1 MATTLQSLRFPFHPSITPPNSHTYPSSTIHYTPKSNTFKSSFIGTRNKRLLSARASSSQYSPTVAENLGDVSIFTAAGESVMFKDLWDQEQ