AlfalfaGEDB | MS.gene95047

M. sativa cultivar XinJiangDaYe / MS.gene95047

KEGG: K09919
GO: -
PFAM: PF04339.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95047.t1	XP_013458719.1	98.7	393	5	0	85	477	86	478	4.30E-231	810.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95047.t1	A0A072UTT2	98.7	393	5	0	85	477	86	478	3.1e-231	810.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene95047	0.825457	4.64E-54	-1.69E-46
MS.gene049171	MS.gene95047	0.870423	1.48E-66	-1.69E-46
MS.gene049173	MS.gene95047	0.837703	4.45E-57	-1.69E-46
MS.gene049217	MS.gene95047	0.820762	5.78E-53	-1.69E-46
MS.gene049222	MS.gene95047	0.892426	1.60E-74	-1.69E-46
MS.gene049232	MS.gene95047	0.806699	7.25E-50	-1.69E-46
MS.gene049257	MS.gene95047	0.806753	7.06E-50	-1.69E-46
MS.gene049285	MS.gene95047	0.878821	2.06E-69	-1.69E-46
MS.gene049320	MS.gene95047	0.844275	8.36E-59	-1.69E-46
MS.gene049427	MS.gene95047	0.83385	4.21E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95047.t1	MTR_4g134670	96.660	479	13	2	1	477	1	478	0.0	962

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95047.t1	AT2G23390	64.073	437	148	4	42	476	39	468	0.0	597
MS.gene95047.t1	AT2G23390	57.877	292	114	4	42	331	39	323	5.03e-118	349

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Find 90 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGTATAGTTGCGGT+TGG	0.560859	8.2:-195400	None:intergenic
AAACGAATTCACCATAAGAA+TGG	0.432976	8.2:-195092	None:intergenic
AACAGTAGAAGCAGGAGCTC+AGG	0.354032	8.2:+197421	MS.gene95047:CDS
AACGAATTCACCATAAGAAT+GGG	0.486994	8.2:-195091	None:intergenic
AAGAGCACATGCATCCCATT+GGG	0.508867	8.2:-194899	None:intergenic
AAGATCCTTGGACCGGTGAC+AGG	0.427977	8.2:-195201	None:intergenic
AATCTTAAAACAGTAGAAGC+AGG	0.528907	8.2:+197413	MS.gene95047:CDS
AATCTTCATCAATAAGGTAA+TGG	0.498534	8.2:-197493	None:intergenic
ACAGTAGAAGCAGGAGCTCA+GGG	0.519444	8.2:+197422	MS.gene95047:CDS
ACGAAGTAAGATCCTTGGAC+CGG	0.613289	8.2:-195208	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAATTTCCACGGTGT+TGG	+	chr8.2:195711-195730	MS.gene95047:intron	30.0%
AAAATTAGTATAGTTGCGGT+TGG	-	chr8.2:195403-195422	None:intergenic	30.0%
AAACGAATTCACCATAAGAA+TGG	-	chr8.2:195095-195114	None:intergenic	30.0%
AAAGTGAACTTAGAAAGACA+AGG	-	chr8.2:197593-197612	None:intergenic	30.0%
AACGAATTCACCATAAGAAT+GGG	-	chr8.2:195094-195113	None:intergenic	30.0%
AATAAACCCCATATTCAAGT+TGG	-	chr8.2:198050-198069	None:intergenic	30.0%
AATCTTAAAACAGTAGAAGC+AGG	+	chr8.2:197413-197432	MS.gene95047:CDS	30.0%
AGCGTAATTTGATCCATATA+CGG	+	chr8.2:197854-197873	MS.gene95047:intron	30.0%
AGTTAGTTAAAGCCAAATGA+AGG	+	chr8.2:195812-195831	MS.gene95047:intron	30.0%
ATAGAACAAAATGGGAGATA+AGG	-	chr8.2:197181-197200	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	194598	198854	194598	ID=MS.gene95047
chr8.2	mRNA	194598	198854	194598	ID=MS.gene95047.t1;Parent=MS.gene95047
chr8.2	exon	194598	195536	194598	ID=MS.gene95047.t1.exon1;Parent=MS.gene95047.t1
chr8.2	CDS	194598	195536	194598	ID=cds.MS.gene95047.t1;Parent=MS.gene95047.t1
chr8.2	exon	196432	196484	196432	ID=MS.gene95047.t1.exon2;Parent=MS.gene95047.t1
chr8.2	CDS	196432	196484	196432	ID=cds.MS.gene95047.t1;Parent=MS.gene95047.t1
chr8.2	exon	196579	196789	196579	ID=MS.gene95047.t1.exon3;Parent=MS.gene95047.t1
chr8.2	CDS	196579	196789	196579	ID=cds.MS.gene95047.t1;Parent=MS.gene95047.t1
chr8.2	exon	197389	197559	197389	ID=MS.gene95047.t1.exon4;Parent=MS.gene95047.t1
chr8.2	CDS	197389	197559	197389	ID=cds.MS.gene95047.t1;Parent=MS.gene95047.t1
chr8.2	exon	198795	198854	198795	ID=MS.gene95047.t1.exon5;Parent=MS.gene95047.t1
chr8.2	CDS	198795	198854	198795	ID=cds.MS.gene95047.t1;Parent=MS.gene95047.t1

Gene Sequence

>MS.gene95047

ATGGCAGCAGTAGCGATAGGAGTGAGGTGCTGCTGCTCATTGTCGTTTCCGTCTCATCATCGCAAATCTTCTTCTTCTTCTGATTATTATTACTATTATTACAGAAGAAGAAGTAGAATCAATGCTTCTTCATTGTTTTGGGGATCTTCTAAGGACAACAACAAACATAATAACATTTCTTCTTCTTCTTCGCATCAGCAACAATTCAGCTTCAATGTTACCAGCACAACAGAATCCGAAGAAGAAAAAGATAAGATTATTACTGTTTCTTTTGTATCTTCAATTTCAGATATTCCATCCACCCAATGGGATGCATGTGCTCTTGATGCTACAGGAGGACCAGACAAGTTCAATCCATTTCTATCACATGCTTTTCTATCATCTTTAGAACTATCCTCTTCTTCTGTTAAGGAAAAGGGATGGACCCCACACCACATCGTCGCTAAGGATATTCATAATCATATTCTCGCTGTTGTTCCTCTCTATCTCAAGACCCATTCTTATGGTGAATTCGTTTTTGATCATTCTTGGGCCAATGCTTACTCTCATTTTTATGGTTCCAATTCTTATTATCCTAAGTTACAATCCTGTGTCCCCTTCACCCCTGTCACCGGTCCAAGGATCTTACTTCGTAACACTTCTTTCAAACATCATGTTTTTGACTTCATTGTTTCTGCTATCAAGGATCTCACTGCCATGTCTCAACTTTCTTCCTTCCATGTCACTTTTCCCTCTGAAAACGAGTGGCACAAATTCACTCAACAAGGTTTCCTCCCTAGGATTGGAATGCAGTATCACTGGACCAACCGCAACTATACTAATTTTGATGACTTCTTGATGGACTTGAAGCATAATAAAAGGAAAAAGATACGTCAAGAGCGCAAGAAGGTTGCAGCTCAGAACTTGATTATGAAACGCCTCCGCGGTTATGAAATAAAGGTATTTTGCATCATGTCTATACGGAATCGCAAATTCTTCTTTTTTTGTGTGTTACATATTAGTAAACTTCTGTTGAACAAATGGAAGCCAATTTGTCATGTCTTGTATAGTAGGAGGGATATATCAGAATTGTGCTTCTTCATAGTTCTATGTTTGTCGGTGTTGGCTACAAGAAAAAAAAATTTCCACGGTGTTGGATATATCAGAATTCCAGTGCACTTTTTCCACTGACACAGCATGTTCTAATGAATGGCAGCATATTTGTCATCATCATAAGTTAGTTAAAGCCAAATGAAGGGTGAATTACAGCTTTTAGTCTTCCAATTTTGACCCATATGCAGAGTAGATGCTAGAGTTTCAAAAGGTGCAATGGAGACTAAAGTCTAAACCTCAAATAATGGAAAAAGAAAAAACTGTTTTTTTTATTCCAATCATTAAACATCTGAACGATATTGTCATGTATGATGTAACACCAAACAATCAGTGGGGAAGTTACCAATGCTTCTCTAGGAATAGAAGTTACCAATGTTTCAGTGTTTTCATATTATGTAGTTGAAATTGTTTGGAAGATATACTCATTAGAGCATCTCTCTTTATAATACTGCTCTTCCTGATGTTTACCTCTCTGACAGAAGTTCACTTTTGGTCCTTTAAGAGATTACAATGAAGTATTTTATTGCAAAAACTTTAGGATGTATTTGGGTTGAGGAAATGAGTTTTGTTTTCATTTCTTGTTTTTACTTTTTAATTACAAAAATACCAAATTGTTTTCACTTTGTATCTTATTTTTAGAGATTTTCATAGGAAATGGTGAAACAAACCAAACAGGCCCTTGGGTTATGATGCATTCTATTTGCTTTCTAATTACTGGCATATTTCGTTTTTGTATTGGAAGGCAAAGCACTGGGATTCCTTCTACACCTTTTACAGGAACACAACTGATAACAAGTATGTTATGCTAATTGAACCACAATATTGTAATACAAAATTTATTTGACGATAGTAGTGTCTAAATATTAGTATGGCTACTGGTCTTTGACAGATGGGGTACTCCTTTCCTGACGAGGGAATTTTTTCATGAGATGGGATCAAAAATGGGAGATCAAGTACTACTTATTGTTGCTGAAGACAATGAGGAACTAGTAGCAGGTGCCCTAAATCTTATCGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCATCCACAAACTTACTATCCATTTTTGCATTTTGAAGCATGTTATTATCAGGTTCACACTTGGCATTATCTTTCGCCTCAAATATTGTTGAATTATTTATTATTTACATTTTGGCTGGGCTTTGGTTTTACCATTAGAGAATAATGCTATAGTTTTTCATCAGATATTTATTCCATCTAAATCATTTATGGAATAAACTTTTCAGTTTGGTTTTTTTTTTTTTTTTTTGAAGAAGCTAAATTAGCCCACCCAAATCGGCCCCGGGGAGAATCGAACCTGAGACCTTAAGGAGGAGCACACTCCTTTTTCAGTGTGGCTTTGATGTGGGTGTTAACTTATAGACGGTATTTGGGACATGAGCAGAACAAAACGAATTAGATATTTGTTATGTTCTCTTCAGTTCCACCAAGTGGCGGAACTAAAGTATACCACATTTTTACCTTATCTCCCATTTTGTTCTATTTTTAATAGGGAAATATTGTTTAGTATGAAAGAATATATATTTGCACGAAACCAAAAAATAGCATGTTTCTCCTTTTAAAAGTCGCACTGCAGTTTTACTATAACCTGTGACCCTGTGATTTCTGTCAAAGGCCTATTTACTATTAGGGAAGCATTTTATATATTTGCATTTTGGTTTGACATCACAGGCAATTGAAGCAGCGATTGAACTCAATCTTAAAACAGTAGAAGCAGGAGCTCAGGGTGAACATAAGATTGAGCGTGGATATCTTCCAGTGACAACATATAGCTGCCATTACCTTATTGATGAAGATTTTAGGAAAGCTATAGAAGATTTTTTAGTTCGTGAATCTTCTCAGGTATGGTGCAGCAGGGATTTATATTTTGTTCCTTGTCTTTCTAAGTTCACTTTGTTCTGATATTACTTGTAAATCATTTTATCAAATAGAGGCAATACTTGTAAATCATTTTATTATTTTCTAGATCTTCCTCTGCCTTTGGTGATCTGACTATCCTCCATCTGATGATCTACTCTCCTTACCTATAGATTTTGTAGAGACAAAAGAAGACTAGAAAAACTATCAGAGAAACTATTAGTAAAGATTTGGAAATTAATTAGTTGGATCGAAATATGGTGTATGATAGAACATTATAGCGTAATTTGATCCATATACGGAATATTTCTCTTCTTTTTTTTGTGATGGTAAAGGCTTACTTTGCAATGGGAAAAGGCTTGCTTGTTGTTGTTGTGATGGTAAAGAATACATTATGCTTACTTTGCAAGTTTGGAGGGGAGGCTTTGGGTATGAGGAAGGAAGTAAGGGAAGTTAAAGAAAGAATAGTCTCCCAACTTGAATATGGGGTTTATTTCATAACACAAAATCCCCTCAAAATGGAGAAACTCAAAAATTATATTGAAGGAGGGTTTAGATAAATTCTTCAAATATAATCTATGTTATTATGATATTATAAAAATTAAAAATATTTTAATGATTAACATTCATCTATCATTCTCTACAAGAACAATCTCTAAAAAAATACGGAATATTTCTCTTCTTTTTTTTCCCCTACTCTCTTCCCCCCAAAGCCCTCCCTACCCTCCAAACTCACAAACAGAGCCGTAGTTGGTTTTGTCTCCTGATAGGATTACTCCTTAATCATTAAAGCCAAGCTGGGAACTGTTGTGAGTACCAGGATGTGTTGTTTTTGTTTGTGTTAAAGGTGGGAGTCTTAAATATAGTTAGACCTATATCCTAGTTATGACTATCGACTGATTACCTTAATGTAGTTATAACTTCTCATCTAATCAAAAGGTCTCATTTTAATTGCATTCACCAGAACAATCCTTCACTTTGCAGCCTCGATTAGAATTGAAGGCAAGGATGTAACCATTTGTTGGCTTAAGAACTTAAATGATTTTAATATTTGAATTAAGCACAGTAGTGCATTTTGGCATAAGACGAAAAAAGTTTGCATTCTTTCAATGGTTTTATAATTATTACTGGGTGTTTTGTTCTGTCATGATATTACCATTCATGCTACCAACTACTGTGATTCCAAAGCACTTGATAATGTGACATTTTTGCCTGTACAGGTGAAGCTTGTTATGAAACTCTTGCGTGATTCTGGTCCTTTCAAGGAAGGTGTCCTGTAG

Protein sequence

>MS.gene95047.t1

MAAVAIGVRCCCSLSFPSHHRKSSSSSDYYYYYYRRRSRINASSLFWGSSKDNNKHNNISSSSSHQQQFSFNVTSTTESEEEKDKIITVSFVSSISDIPSTQWDACALDATGGPDKFNPFLSHAFLSSLELSSSSVKEKGWTPHHIVAKDIHNHILAVVPLYLKTHSYGEFVFDHSWANAYSHFYGSNSYYPKLQSCVPFTPVTGPRILLRNTSFKHHVFDFIVSAIKDLTAMSQLSSFHVTFPSENEWHKFTQQGFLPRIGMQYHWTNRNYTNFDDFLMDLKHNKRKKIRQERKKVAAQNLIMKRLRGYEIKAKHWDSFYTFYRNTTDNKWGTPFLTREFFHEMGSKMGDQVLLIVAEDNEELVAGALNLIGGDTLFGRLWGCHPQTYYPFLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIERGYLPVTTYSCHYLIDEDFRKAIEDFLVRESSQVKLVMKLLRDSGPFKEGVL