AlfalfaGEDB | MS.gene072496

M. sativa cultivar XinJiangDaYe / MS.gene072496

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0016825 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00574.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072496.t1	XP_003626204.1	96.6	323	6	2	1	319	1	322	6.50E-167	596.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072496.t1	Q8L770	70.5	308	83	5	12	314	23	327	5.1e-112	405.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072496.t1	B7FKZ0	96.6	323	6	2	1	319	1	322	4.7e-167	596.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene072496	0.88816	7.55E-73	-1.69E-46
MS.gene049173	MS.gene072496	0.815861	7.44E-52	-1.69E-46
MS.gene04921	MS.gene072496	-0.800184	1.62E-48	-1.69E-46
MS.gene049217	MS.gene072496	0.841799	3.82E-58	-1.69E-46
MS.gene049222	MS.gene072496	0.896417	3.76E-76	-1.69E-46
MS.gene049232	MS.gene072496	0.859942	2.92E-63	-1.69E-46
MS.gene049285	MS.gene072496	0.873638	1.26E-67	-1.69E-46
MS.gene049320	MS.gene072496	0.861053	1.34E-63	-1.69E-46
MS.gene049609	MS.gene072496	0.809058	2.28E-50	-1.69E-46
MS.gene049627	MS.gene072496	0.841123	5.75E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072496.t1	MTR_7g112640	96.594	323	6	2	1	319	1	322	0.0	635
MS.gene072496.t1	MTR_1g106550	45.699	186	98	2	105	289	153	336	1.51e-49	169
MS.gene072496.t1	MTR_4g099360	45.455	198	105	2	93	290	90	284	8.90e-41	144
MS.gene072496.t1	MTR_4g075100	36.765	204	118	2	107	310	45	237	3.05e-36	130
MS.gene072496.t1	MTR_7g082980	33.838	198	120	2	101	298	73	259	1.05e-30	117
MS.gene072496.t1	MTR_7g109610	32.222	180	111	2	110	289	111	279	7.26e-27	107
MS.gene072496.t1	MTR_5g026840	32.432	185	114	2	107	291	88	261	7.70e-27	107
MS.gene072496.t1	MTR_4g069800	34.973	183	108	3	107	289	99	270	9.93e-26	103
MS.gene072496.t1	MTR_1g086940	30.693	202	121	4	94	289	94	282	1.35e-25	104
MS.gene072496.t1	MTR_4g069800	34.483	174	103	3	116	289	76	238	2.19e-23	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072496.t1	AT1G09130	67.273	330	89	7	1	314	1	327	4.42e-153	432
MS.gene072496.t1	AT1G09130	67.273	330	89	7	1	314	1	327	4.42e-153	432
MS.gene072496.t1	AT1G09130	67.069	331	89	8	1	313	1	329	9.95e-153	433
MS.gene072496.t1	AT1G49970	47.120	191	98	2	99	288	163	351	1.60e-51	175
MS.gene072496.t1	AT4G17040	45.098	204	107	3	93	294	91	291	2.79e-51	172
MS.gene072496.t1	AT5G23140	38.251	183	102	2	107	289	48	219	6.62e-34	124
MS.gene072496.t1	AT5G45390	34.010	197	119	2	93	289	65	250	7.92e-30	115
MS.gene072496.t1	AT1G66670	29.779	272	157	6	49	298	6	265	2.95e-29	114
MS.gene072496.t1	AT1G02560	32.673	202	117	4	94	289	97	285	8.93e-29	112
MS.gene072496.t1	AT1G11750	31.496	254	152	5	43	289	47	285	2.31e-27	108

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Find 94 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACGAGGCTGCTGAATCA+TGG	0.513570	7.3:-3838677	None:intergenic
AACACTGTTCTCAGATTCTT+TGG	0.305404	7.3:+3840806	MS.gene072496:intron
AACCCAGACGATGGAACACG+AGG	0.649490	7.3:-3838691	None:intergenic
AACGGTCGAATTGTTTACAT+TGG	0.533409	7.3:+3837085	MS.gene072496:CDS
AAGCGAGTTTGGAGAGAAAT+GGG	0.491275	7.3:-3836674	None:intergenic
AAGGGTTAAGAAGTGTTTCG+GGG	0.654420	7.3:-3836713	None:intergenic
AATGATGCAGATGAAAACTG+AGG	0.775475	7.3:+3837700	MS.gene072496:CDS
AATGGGTCGTTAGGGTTGAA+AGG	0.550428	7.3:-3836657	None:intergenic
ACCGGGACTACGCGGGCGGA+TGG	0.530411	7.3:+3837524	MS.gene072496:CDS
ACGAGTAGATGAAGCGGGCA+TGG	0.525906	7.3:-3836571	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGAAAAAAGCAAAGG+GGG	+	chr7.3:3838244-3838263	MS.gene072496:intron	30.0%
AAATGTGAGTATCTTGCATT+AGG	+	chr7.3:3840238-3840257	MS.gene072496:intron	30.0%
AACATTACCACATCAACTAT+TGG	+	chr7.3:3837880-3837899	MS.gene072496:intron	30.0%
AATTAAGATAACAACGTGAG+AGG	-	chr7.3:3839298-3839317	None:intergenic	30.0%
ACATTACCACATCAACTATT+GGG	+	chr7.3:3837881-3837900	MS.gene072496:intron	30.0%
AGAAAGAAGTGACAAAGAAA+AGG	+	chr7.3:3839790-3839809	MS.gene072496:intron	30.0%
AGTAAGTGCTTATTTACATC+GGG	+	chr7.3:3840421-3840440	MS.gene072496:intron	30.0%
AGTTGTATTATTACCATGAC+AGG	+	chr7.3:3837277-3837296	MS.gene072496:intron	30.0%
ATAAATTTGACTAACCTCCT+TGG	-	chr7.3:3838746-3838765	None:intergenic	30.0%
ATATGGAGGATATTTGTAAC+TGG	-	chr7.3:3839051-3839070	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	3836543	3840918	3836543	ID=MS.gene072496
chr7.3	mRNA	3836543	3840918	3836543	ID=MS.gene072496.t1;Parent=MS.gene072496
chr7.3	exon	3836543	3836806	3836543	ID=MS.gene072496.t1.exon1;Parent=MS.gene072496.t1
chr7.3	CDS	3836543	3836806	3836543	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3837010	3837114	3837010	ID=MS.gene072496.t1.exon2;Parent=MS.gene072496.t1
chr7.3	CDS	3837010	3837114	3837010	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3837431	3837553	3837431	ID=MS.gene072496.t1.exon3;Parent=MS.gene072496.t1
chr7.3	CDS	3837431	3837553	3837431	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3837662	3837721	3837662	ID=MS.gene072496.t1.exon4;Parent=MS.gene072496.t1
chr7.3	CDS	3837662	3837721	3837662	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3838489	3838585	3838489	ID=MS.gene072496.t1.exon5;Parent=MS.gene072496.t1
chr7.3	CDS	3838489	3838585	3838489	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3838677	3838750	3838677	ID=MS.gene072496.t1.exon6;Parent=MS.gene072496.t1
chr7.3	CDS	3838677	3838750	3838677	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3840188	3840241	3840188	ID=MS.gene072496.t1.exon7;Parent=MS.gene072496.t1
chr7.3	CDS	3840188	3840241	3840188	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3840338	3840421	3840338	ID=MS.gene072496.t1.exon8;Parent=MS.gene072496.t1
chr7.3	CDS	3840338	3840421	3840338	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1
chr7.3	exon	3840820	3840918	3840820	ID=MS.gene072496.t1.exon9;Parent=MS.gene072496.t1
chr7.3	CDS	3840820	3840918	3840820	ID=cds.MS.gene072496.t1;Parent=MS.gene072496.t1

Gene Sequence

>MS.gene072496

ATGGCGACATGCTTTCGAGTACCCATATCCATGCCCGCTTCATCTACTCGTTTCACTCCAACAAGAAGATTGAGAACTCTCAGAACCGTTAACGCAATAGCCAAATCCAAAATTCCTTTCAACCCTAACGACCCATTTCTCTCCAAACTCGCTTCTGTCGCTGCTTCTTCCCCCGAAACACTTCTTAACCCTTCTTCTTCTCCCGATAATCTTCCTTTTTTGGATATTTTCGATTCCCCTCAACTCATGGCCACTCCCGCTCAAGTAAGTTATTCCAATTTCTAGGAATTCAAGAAAATTAGAGATTATTGTTGCTTGTTATGTGTGATTTTAGAAGTAGTTTCGATTAAGGTTAGACGGTTTTAATGATGATAATTACAAATTGAGTACTTAACATCTTTGGTTAAATATGATACGCTCTTTGCATTAATTTTAATTATTATTATTATCTTCTGTGGTTGAAACAGCTTGAAAGAAGTGTTTCATACAGCCAACAACAACGACCCAAAAGACCACCTCCTGACCTGCCATCGCTTCTGCTCAACGGTCGAATTGTTTACATTGGCATGCCTGTAAGTGTTCAATTGTGCATTGATTTATGTTTTCTTGAGAAAATGACACAATTGAATGTAATTAAATGTTTCGGTGTCGGACACTGGCATGTGTCAGACACCGGACATGCCTTCCAAGTGTGGTGCTTCAGAGATTATGATGTTTGTAACTGTATTGCTTGTAGTTGTATTATTACCATGACAGGATTGAGTTTCAAACTTATATGTATTATCCCTCTTAATGCTCTGAATTGATTAATCCTTTTATTTTATTTTATTTTATGGGAATTGCTATTTGTACAAACTGTTATGACTGTTTCTTGTTTCTACCTATCAGTTGGTGCCGGCTGTCACGGAGCTTGTTATTGCAGAGCTTATGTTCCTGCAGTGGATGGCTCCTAAAGAACCAATATATATTTACATCAATTCCACCGGGACTACGCGGGCGGATGGAGAAACGGTAATTGGCTGACACCTTGCTTGTTATATTGAAATGTTTGATGTTCTGTCCGCTTGGACACATGCTTTGTATGGGTTCAACTCATGCATTTATTGTTTTTGACTTTAGGTGGCGATGGAGACAGAAGGTTTTGCCATTTATGATGCAATGATGCAGATGAAAACTGAGGTTTGTTTCTTCTCATTGACAATGCACTTCAAATAATTTTTTATACTTCTTGTTGACTTTTGTTGATGATTGTACTTGACAGTAATATGATGACACAATTATTTTGGGTTGCTTTGATTTATGGAAATTGTGAAGCGTAATGTAATTATGATGACTTTAACATTACCACATCAACTATTGGGCTGTGGTGTAAACGATTCATACTGCTGGCAGCATGGTGGCACATTAGTAACTTATGTTTATAATAACTGCACGCATTCTTTTTAGTGCCACAGTTAAATTTTACTCCCTCCGTCCCTATATCTAACCACCCATTTGACTTTATTTTTGTCCCTAAATCTAAACCCCTTTTCAAATTACTAGATGCATTTATTATTTTTTCCTAAACATACCCCTAATTAATACTACTAACTTATCTTGAAATTTAAAAAGTCAAATTTAATACATATACAAACAAAGGACAATATGGTAATATTAACACACAAAACAGACATAATAATTACACTGACAACTTTTCTTAAGAAATGTGAAAAAAGCAAAGGGGGGTTACATTAAGGGACGGAGGGAGTACTTCATATGACCTGGAATTTGTTTTTGATTTAATCTGAGTAATGTACTTTTAAAGAATTGTGATGGATAATAGGTTAATTATTTGTGTGCTCAGGATCATGTGTAATCATGCATCCTTTTTAAGCGATTTGTTCATCTCTTTAAATAGCATTTGAAAATATCATGTCCCACGTATTTGGCTTTTGCGTCCTGAGCAGATAAACACAGTTGCTCTTGGAGCTGCTGTAGGTCAAGCCTGTCTATTACTTTCGGCAGGGACTAAAGGTAGACGCTATATGACGCCACATGCAAAAGGTACAGCGTGGACCCAATTGTTTCTATGTTTTTGTTTATAGTCCTTTAATTCCTCACAGATTTGATACTTTTCTATTGGTTACTGTTTCAGCCATGATTCAGCAGCCTCGTGTTCCATCGTCTGGGTTGAGACCTGCAAGTGATGTTCTTATTCATGCCAAGGAGGTTAGTCAAATTTATTTTGCTACACCGTGTTTTTATATTGGGAATGACGAAGTTTGTTGTGTTTTTGTTTGATTTTTTCCTTCTCATGTTGTCGATGTCTGACAATTGGCATGTTCATGTAGAACTTCCGTCTGCCACACTATTTTAAAATACATCTTAGTGTATTTCCTTACTATATTTGAGCACATTTTCAATTTATTTCTTATTATCCAAACCTAGTGTCCATAATCAGCTGGTAAATTTGAATGTGAGCATCTTTCTAGTTCAAGACTTGTGATTTATATTCACTCAAATGTTCCAGTTACAAATATCCTCCATATATTTGGAATGGATAGTTCTTTCTCACTTCCATGTGTAGTTTTTTTCTCTAATTTGACTCTAAGGCTATGTTTGGTAATGTCAATAATCTAGCTTATAGAGTATTGGAATAGCTTATAAGCTTGTTTGATCAAATGAGACGTGTTTGGTAAACAAGCTTCTCTCACCAGCTTATAGCTTTTTTTGAGATGCTATTTCAAGTAGCGTTCGAGTTTATAGCTTATAGCCTCTCACGTTGTTATCTTAATTATATTATTTCTTTAACCTTTTGCCAAAAAATAATAATTACCCACTAACTAAAATTAAAAAGTGCACTCGTGCTCCTTCCATTGCATTCTTCTAGTGTTCTGTTACCACTTATTTGTTTTTAAATATCACAAATAGAAAAAAAGCCATGATGCAATGTTTGGCGAAGTCCAACTTCGTATTTCAGCTAAATTATTGGATTGAAATTTGAAACCCCATCTATGCACAATCGGTAGTCATCATTGTTTATTTCTCAAGTCTATAAACATTACATGTAGTTGGATCTAGACAATAGAAAGTTAGAAGCATCAACAACAATATATATAGCCTCACTCTAATGTTAATATGTTTTGCGAGTGAATTTTACATAAAAGTTACACAAACAGCTAATTACACATAAAACCACTACAGGTTTAGAAATGAGTGACTTCGATGTGTACTGCACAATTTGTCCTTGAAGGTTTAAACCATTACAAGAAAGAAGTGACAAAGAAAAGGAGGGGATGGGAACAAAATTCAAATCATATTTTTTCTTGTTTGTTTTATTAAATGTTTTTTTATACATTTAAAATTAAATTATGTTCTTTTATATTTATGAGAGCTAAATTTACCCAGCACTTTAACGTCAACTGACTAGCTCTTCAGCTATAAGCTATCAGTTATCAGTTATAAGCTAGCTTTTAAGCCATCAGCTAGCTTATGACTTAGTTTAACCAAACTGAGCTTAAATGTGAGCTTAAATGTGAACCTGAACATTTTTCATAAACCTTTACTGTACATCTATCTATTTATCTTCACTCTTGATGTTCTTTTATTTAAACCTAAATGTCCAACTATGTCTCTAAATCTTTGCCTGTACTCCAAAATTTTCAGGTGATGGTAAACAGGGACACTCTAGTTAAACTATTGGCCAAACATACAGAAAATGTGAGTATCTTGCATTAGGTATTGGATATCATATTTATTCAATGGACACGAGGGGAAATCTAATATTTTGTTATTTGCTTCTTTTAAAACTACTAGTCCGAGGAGACAGTTTCCAATGTGATGAAGAGGTCATATTACATGGACGCATTATTGGCTAAGGAATTTGGGGTCATTGACAAAGTAAGTGCTTATTTACATCGGGTTAAGAGTCTGTTTGTTTCATGAATGATGCTAGTAACACTCATTTTAACATACTCTTCCTAACACTCACTCTCTTATTGGTTGAAATGCATATAGGTTCCACCACTTTATGTGGAACCCATTTTCAAAGTTGTGGGACCCAAATGTATTTCACCCAATAAGAGAGCGAGTGTTGGAAACAATGTTAAAATAAATGTTGCTTGCATTAATCTTGTTTGATTTTTTAATTAAAAAATCAGTTATTTTAAAAGACTCAGTTTTCAAAATTTGTTGAGTAAATTACTTTGACACACTATTAAAATCACGTTTTTAAAAGATTCTTCAGTCTATGCTCTCATGCTTTGCTGACCAAACTAATGTTGGAACACTGTTCTCAGATTCTTTGGCGTGGCCAGGAGAAGATTATGGCAGACGTTCCTTCTCGGGATGATCGGGAAAACGGTACTGCTGGTGCTAAAGTTGAAAATAGATTTTAG

Protein sequence

>MS.gene072496.t1

MATCFRVPISMPASSTRFTPTRRLRTLRTVNAIAKSKIPFNPNDPFLSKLASVAASSPETLLNPSSSPDNLPFLDIFDSPQLMATPAQLERSVSYSQQQRPKRPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMETEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSYYMDALLAKEFGVIDKILWRGQEKIMADVPSRDDRENGTAGAKVENRF