Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21482.t1 | XP_003611450.2 | 75.6 | 373 | 76 | 4 | 1 | 371 | 1 | 360 | 1.30E-129 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21482.t1 | G7JZV4 | 75.6 | 373 | 76 | 4 | 1 | 371 | 1 | 360 | 9.1e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene21482 | 0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene049171 | MS.gene21482 | 0.850378 | 1.77E-60 | -1.69E-46 |
| MS.gene049217 | MS.gene21482 | 0.830371 | 3.05E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene21482 | 0.854322 | 1.33E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene21482 | 0.840979 | 6.27E-58 | -1.69E-46 |
| MS.gene049320 | MS.gene21482 | 0.814817 | 1.27E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene21482 | 0.815174 | 1.06E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene21482 | 0.833007 | 6.83E-56 | -1.69E-46 |
| MS.gene049805 | MS.gene21482 | 0.831299 | 1.81E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene21482 | 0.821153 | 4.70E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene21482 | 0.817969 | 2.50E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene21482 | 0.816194 | 6.27E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene21482 | 0.813718 | 2.22E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene21482 | 0.847703 | 9.78E-60 | -1.69E-46 |
| MS.gene050504 | MS.gene21482 | 0.83332 | 5.71E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene21482 | 0.821438 | 4.04E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene21482 | 0.821563 | 3.78E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene21482 | 0.825458 | 4.64E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene21482 | 0.813799 | 2.13E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene21482 | 0.80694 | 6.44E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene21482 | 0.838899 | 2.19E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene21482 | 0.820215 | 7.71E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene21482 | 0.829789 | 4.23E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene21482 | 0.805351 | 1.39E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene21482 | 0.82874 | 7.60E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene21482 | 0.826836 | 2.18E-54 | -1.69E-46 |
| MS.gene050904 | MS.gene21482 | 0.825736 | 3.98E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene21482 | 0.832347 | 9.95E-56 | -1.69E-46 |
| MS.gene050986 | MS.gene21482 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene051167 | MS.gene21482 | -0.808173 | 3.53E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene21482 | 0.815622 | 8.41E-52 | -1.69E-46 |
| MS.gene051317 | MS.gene21482 | 0.83592 | 1.27E-56 | -1.69E-46 |
| MS.gene051438 | MS.gene21482 | 0.841225 | 5.40E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene21482 | 0.836589 | 8.56E-57 | -1.69E-46 |
| MS.gene051838 | MS.gene21482 | 0.858314 | 8.97E-63 | -1.69E-46 |
| MS.gene052164 | MS.gene21482 | 0.830939 | 2.21E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene21482 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene21482 | 0.805974 | 1.03E-49 | -1.69E-46 |
| MS.gene052506 | MS.gene21482 | 0.810528 | 1.10E-50 | -1.69E-46 |
| MS.gene052605 | MS.gene21482 | 0.813666 | 2.28E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene21482 | 0.806802 | 6.89E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene21482 | 0.815183 | 1.05E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene21482 | 0.802547 | 5.33E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene21482 | 0.803178 | 3.95E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene21482 | 0.826379 | 2.80E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene21482 | 0.827916 | 1.20E-54 | -1.69E-46 |
| MS.gene052966 | MS.gene21482 | 0.81867 | 1.74E-52 | -1.69E-46 |
| MS.gene052986 | MS.gene21482 | 0.802158 | 6.41E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene21482 | 0.804542 | 2.05E-49 | -1.69E-46 |
| MS.gene053117 | MS.gene21482 | 0.822359 | 2.47E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene21482 | 0.834273 | 3.30E-56 | -1.69E-46 |
| MS.gene053207 | MS.gene21482 | 0.835837 | 1.33E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene21482 | 0.807638 | 4.58E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene21482 | 0.804375 | 2.23E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene21482 | 0.801123 | 1.04E-48 | -1.69E-46 |
| MS.gene053480 | MS.gene21482 | 0.820978 | 5.15E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene21482 | 0.800375 | 1.48E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene21482 | 0.859917 | 2.97E-63 | -1.69E-46 |
| MS.gene053824 | MS.gene21482 | 0.827926 | 1.19E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene21482 | 0.828503 | 8.67E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene21482 | 0.832276 | 1.04E-55 | -1.69E-46 |
| MS.gene054600 | MS.gene21482 | 0.832167 | 1.10E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene21482 | 0.834982 | 2.19E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene21482 | 0.8111 | 8.29E-51 | -1.69E-46 |
| MS.gene05494 | MS.gene21482 | 0.807263 | 5.51E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene21482 | 0.817945 | 2.53E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene21482 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene21482 | 0.846692 | 1.85E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene21482 | 0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene21482 | 0.830843 | 2.34E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene21482 | 0.845639 | 3.58E-59 | -1.69E-46 |
| MS.gene055748 | MS.gene21482 | 0.842981 | 1.85E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene21482 | 0.806003 | 1.02E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene21482 | 0.824157 | 9.40E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene21482 | 0.800139 | 1.66E-48 | -1.69E-46 |
| MS.gene055941 | MS.gene21482 | 0.842893 | 1.96E-58 | -1.69E-46 |
| MS.gene056374 | MS.gene21482 | 0.803893 | 2.81E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene21482 | 0.802352 | 5.84E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene21482 | 0.804393 | 2.21E-49 | -1.69E-46 |
| MS.gene056487 | MS.gene21482 | 0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene21482 | 0.831253 | 1.85E-55 | -1.69E-46 |
| MS.gene05664 | MS.gene21482 | 0.823171 | 1.60E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene21482 | 0.820158 | 7.95E-53 | -1.69E-46 |
| MS.gene05666 | MS.gene21482 | 0.816174 | 6.34E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene21482 | 0.817549 | 3.11E-52 | -1.69E-46 |
| MS.gene056898 | MS.gene21482 | 0.838638 | 2.55E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene21482 | 0.842421 | 2.61E-58 | -1.69E-46 |
| MS.gene057658 | MS.gene21482 | 0.839598 | 1.44E-57 | -1.69E-46 |
| MS.gene057734 | MS.gene21482 | 0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene21482 | 0.820774 | 5.74E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene21482 | 0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene21482 | 0.82503 | 5.85E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene21482 | 0.829066 | 6.34E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene21482 | 0.850534 | 1.60E-60 | -1.69E-46 |
| MS.gene058838 | MS.gene21482 | 0.848882 | 4.62E-60 | -1.69E-46 |
| MS.gene059022 | MS.gene21482 | 0.81594 | 7.14E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene21482 | 0.842464 | 2.55E-58 | -1.69E-46 |
| MS.gene05934 | MS.gene21482 | 0.818663 | 1.74E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene21482 | 0.832239 | 1.06E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene21482 | 0.840737 | 7.26E-58 | -1.69E-46 |
| MS.gene060762 | MS.gene21482 | 0.850767 | 1.37E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene21482 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene06092 | MS.gene21482 | 0.838118 | 3.48E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene21482 | 0.810054 | 1.39E-50 | -1.69E-46 |
| MS.gene06111 | MS.gene21482 | 0.803894 | 2.80E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene21482 | 0.846783 | 1.75E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21482.t1 | MTR_5g014110 | 87.328 | 363 | 31 | 4 | 1 | 361 | 1 | 350 | 0.0 | 528 |
| MS.gene21482.t1 | MTR_1g053910 | 30.867 | 392 | 191 | 20 | 1 | 367 | 1 | 337 | 2.53e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21482.t1 | AT3G57990 | 32.317 | 328 | 167 | 11 | 1 | 311 | 1 | 290 | 3.10e-33 | 127 |
Find 78 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTGGCAGTGAATAAAAT+TGG | 0.189398 | 5.3:-7319246 | MS.gene21482:CDS |
| TTCACCTTGTGTTGGTGTTA+TGG | 0.239203 | 5.3:-7319358 | MS.gene21482:CDS |
| GAATGTTGAGAAGGAGAATA+AGG | 0.275772 | 5.3:-7319124 | MS.gene21482:CDS |
| GAAGAGAGAAATGACCAAAT+TGG | 0.284719 | 5.3:+7319607 | None:intergenic |
| GGGTTGTTGAATATTGTTAT+TGG | 0.296129 | 5.3:+7319915 | None:intergenic |
| GGGGTTGAAAATGCCATATT+TGG | 0.313158 | 5.3:-7319262 | MS.gene21482:CDS |
| AAGAGAGAAATGACCAAATT+GGG | 0.341710 | 5.3:+7319608 | None:intergenic |
| TTTCCTGAAGGGTGTTCTTC+CGG | 0.343308 | 5.3:-7319486 | MS.gene21482:CDS |
| TTACACTTTAAACCCCAATT+TGG | 0.351935 | 5.3:-7319621 | MS.gene21482:CDS |
| AAGCAGAAGCAGAAGCATTC+AGG | 0.352808 | 5.3:-7319045 | MS.gene21482:CDS |
| GGTGAGAGCTTTCAAAGTTT+AGG | 0.356862 | 5.3:-7319024 | MS.gene21482:CDS |
| GAAGGAGATGAAAATGGATT+TGG | 0.357391 | 5.3:-7319148 | MS.gene21482:CDS |
| CTATCATTATTTGGGTTTGA+GGG | 0.361904 | 5.3:+7319946 | None:intergenic |
| ATTGTTGAATGAGATGAAAA+TGG | 0.365578 | 5.3:-7319091 | MS.gene21482:CDS |
| GCTAGAATTAGTAACAGTTT+TGG | 0.366611 | 5.3:+7319551 | None:intergenic |
| GCTATCATTATTTGGGTTTG+AGG | 0.371900 | 5.3:+7319945 | None:intergenic |
| CTCTCCCTCAAATCCGGTTT+AGG | 0.377684 | 5.3:-7319741 | MS.gene21482:CDS |
| TTCTCTCTCTCCCTCAAATC+CGG | 0.384397 | 5.3:-7319747 | MS.gene21482:CDS |
| ACAACGTTGGTGTTGGTGTT+GGG | 0.388448 | 5.3:-7319419 | MS.gene21482:CDS |
| CTTTCAACAAATTTCCCAAC+TGG | 0.401458 | 5.3:-7319834 | MS.gene21482:CDS |
| GAAGAAGTTGTGGTTGTTGT+TGG | 0.403361 | 5.3:+7319786 | None:intergenic |
| ATTTGGCAGTGAATAAAATT+GGG | 0.410901 | 5.3:-7319245 | MS.gene21482:CDS |
| GGTGCTGAAGGAGATGAAAA+TGG | 0.412755 | 5.3:-7319154 | MS.gene21482:CDS |
| TGTTTCACCTCAAATTGAAA+AGG | 0.413802 | 5.3:-7319520 | MS.gene21482:CDS |
| AGAAGTTGAGTAGTTATTTG+TGG | 0.420121 | 5.3:+7319872 | None:intergenic |
| CGGTTGGCAAAATTTGAACT+TGG | 0.433091 | 5.3:-7319466 | MS.gene21482:CDS |
| CAACCGGAAGAACACCCTTC+AGG | 0.434204 | 5.3:+7319483 | None:intergenic |
| ATGAAAATGGGAGTTTCTAA+AGG | 0.436835 | 5.3:-7319078 | MS.gene21482:CDS |
| AATTTGAACTTGGAACCATT+TGG | 0.450192 | 5.3:-7319456 | MS.gene21482:CDS |
| GTTTCACCTCAAATTGAAAA+GGG | 0.450632 | 5.3:-7319519 | MS.gene21482:CDS |
| TAATTGTGAAGGTGATTTGC+AGG | 0.455443 | 5.3:-7319175 | MS.gene21482:CDS |
| GAAGAACACCCTTCAGGAAA+AGG | 0.459462 | 5.3:+7319489 | None:intergenic |
| CTGAAGGGTGTTCTTCCGGT+TGG | 0.461829 | 5.3:-7319482 | MS.gene21482:CDS |
| AGGAAGAAGAGGGGTAGAAG+AGG | 0.462267 | 5.3:+7319653 | None:intergenic |
| TGGAGAGTAAGAGAGTTTGA+AGG | 0.463503 | 5.3:+7319806 | None:intergenic |
| GGCAGTGAATAAAATTGGGT+TGG | 0.467463 | 5.3:-7319241 | MS.gene21482:CDS |
| GTTTGAAGGTTGGACCAGTT+GGG | 0.475548 | 5.3:+7319820 | None:intergenic |
| AGTTTGAAGGTTGGACCAGT+TGG | 0.477278 | 5.3:+7319819 | None:intergenic |
| TTGTTGTTATTGTGACCAAA+TGG | 0.479560 | 5.3:+7319441 | None:intergenic |
| AACAACAACCCTTGTGTCAC+CGG | 0.481710 | 5.3:+7319321 | None:intergenic |
| AAGACCTAAACCGGATTTGA+GGG | 0.482511 | 5.3:+7319737 | None:intergenic |
| AAGAGAAAGAAGGAAGAAGA+GGG | 0.484937 | 5.3:+7319643 | None:intergenic |
| CAACGTTGGTGTTGGTGTTG+GGG | 0.488480 | 5.3:-7319418 | MS.gene21482:CDS |
| CTGTGATAGTTGAAAGTAAA+GGG | 0.504099 | 5.3:+7319895 | None:intergenic |
| AAAGACCTAAACCGGATTTG+AGG | 0.506868 | 5.3:+7319736 | None:intergenic |
| GATTTGAGGGAGAGAGAGAA+AGG | 0.514169 | 5.3:+7319750 | None:intergenic |
| AATGGGAGTTTCTAAAGGGA+AGG | 0.515092 | 5.3:-7319073 | MS.gene21482:CDS |
| AACAACGTTGGTGTTGGTGT+TGG | 0.518386 | 5.3:-7319420 | MS.gene21482:CDS |
| GAATAAAATTGGGTTGGAGA+GGG | 0.535296 | 5.3:-7319235 | MS.gene21482:CDS |
| AGAAGAAAGAGAGAAATTAG+CGG | 0.537805 | 5.3:+7319680 | None:intergenic |
| TTGTTGAATGAGATGAAAAT+GGG | 0.539773 | 5.3:-7319090 | MS.gene21482:CDS |
| TGAAAATGGGAGTTTCTAAA+GGG | 0.540370 | 5.3:-7319077 | MS.gene21482:CDS |
| TATCATTATTTGGGTTTGAG+GGG | 0.540727 | 5.3:+7319947 | None:intergenic |
| AAAGAGAAAGAAGGAAGAAG+AGG | 0.540783 | 5.3:+7319642 | None:intergenic |
| ATTTGAGGTGAAACAGAAAG+AGG | 0.542815 | 5.3:+7319528 | None:intergenic |
| TTAAAGTGTAAAGAGAAAGA+AGG | 0.545511 | 5.3:+7319633 | None:intergenic |
| AACAACAACAACGTTGGTGT+TGG | 0.556990 | 5.3:-7319426 | MS.gene21482:CDS |
| TATGGCTAGGACGGTGATGC+CGG | 0.560278 | 5.3:-7319340 | MS.gene21482:CDS |
| ACGGTGATGCCGGTGACACA+AGG | 0.562748 | 5.3:-7319330 | MS.gene21482:CDS |
| AAGAAATGAAGAAAGATGAG+TGG | 0.566368 | 5.3:-7319209 | MS.gene21482:CDS |
| AGAGAAAGAAGGAAGAAGAG+GGG | 0.566909 | 5.3:+7319644 | None:intergenic |
| TGAATAAAATTGGGTTGGAG+AGG | 0.567365 | 5.3:-7319236 | MS.gene21482:CDS |
| GGATTTGGAGAATGTTGAGA+AGG | 0.568307 | 5.3:-7319133 | MS.gene21482:CDS |
| CTTGTGTTGGTGTTATGGCT+AGG | 0.572621 | 5.3:-7319353 | MS.gene21482:CDS |
| GAGTAAGAGAGTTTGAAGGT+TGG | 0.580998 | 5.3:+7319810 | None:intergenic |
| CACAATAACAACAACAACGT+TGG | 0.585359 | 5.3:-7319432 | MS.gene21482:CDS |
| TATGGTCTTTCACCTTGTGT+TGG | 0.586817 | 5.3:-7319366 | MS.gene21482:CDS |
| GGTGTAAGAATCTGAGAGAA+CGG | 0.587778 | 5.3:+7319578 | None:intergenic |
| AGGTGATTTGCAGGTGCTGA+AGG | 0.592161 | 5.3:-7319166 | MS.gene21482:CDS |
| AAGACAAGAGGAGAATGATG+AGG | 0.617004 | 5.3:+7319705 | None:intergenic |
| TTTGAGGTGAAACAGAAAGA+GGG | 0.620965 | 5.3:+7319529 | None:intergenic |
| AGAGAGAAATGACCAAATTG+GGG | 0.622142 | 5.3:+7319609 | None:intergenic |
| TGTTGGTGTTATGGCTAGGA+CGG | 0.624391 | 5.3:-7319349 | MS.gene21482:CDS |
| GCTGTGATAGTTGAAAGTAA+AGG | 0.627420 | 5.3:+7319894 | None:intergenic |
| AAATTAGCGGAGAAGACAAG+AGG | 0.646343 | 5.3:+7319693 | None:intergenic |
| AACAACGATGATAATTGTGA+AGG | 0.673292 | 5.3:-7319186 | MS.gene21482:CDS |
| CTAGCCATAACACCAACACA+AGG | 0.698523 | 5.3:+7319354 | None:intergenic |
| CGGTGATGCCGGTGACACAA+GGG | 0.700522 | 5.3:-7319329 | MS.gene21482:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTTGCTATCATTATTT+GGG | + | chr5.3:7318958-7318977 | None:intergenic | 20.0% |
| ! | AGTTTAGGAAGCAATAAAAA+TGG | - | chr5.3:7319884-7319903 | MS.gene21482:CDS | 25.0% |
| ! | ATTGTTGAATGAGATGAAAA+TGG | - | chr5.3:7319802-7319821 | MS.gene21482:CDS | 25.0% |
| ! | ATTTGGCAGTGAATAAAATT+GGG | - | chr5.3:7319648-7319667 | MS.gene21482:CDS | 25.0% |
| ! | GCTAAAAACAGTGAAAAATA+TGG | - | chr5.3:7319509-7319528 | MS.gene21482:CDS | 25.0% |
| ! | TATTTGGCAGTGAATAAAAT+TGG | - | chr5.3:7319647-7319666 | MS.gene21482:CDS | 25.0% |
| ! | TTAAAGTGTAAAGAGAAAGA+AGG | + | chr5.3:7319263-7319282 | None:intergenic | 25.0% |
| ! | TTGTTGAATGAGATGAAAAT+GGG | - | chr5.3:7319803-7319822 | MS.gene21482:CDS | 25.0% |
| !! | ATTTTATTCACTGCCAAATA+TGG | + | chr5.3:7319647-7319666 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTTGGAATTTGA+GGG | + | chr5.3:7318913-7318932 | None:intergenic | 25.0% |
| !!! | GTACTTTTGCTATCATTATT+TGG | + | chr5.3:7318959-7318978 | None:intergenic | 25.0% |
| !!! | GTTGATTTTCATTGTTGTTT+TGG | + | chr5.3:7318923-7318942 | None:intergenic | 25.0% |
| AACAACGATGATAATTGTGA+AGG | - | chr5.3:7319707-7319726 | MS.gene21482:CDS | 30.0% | |
| AAGAAATGAAGAAAGATGAG+TGG | - | chr5.3:7319684-7319703 | MS.gene21482:CDS | 30.0% | |
| AAGAGAGAAATGACCAAATT+GGG | + | chr5.3:7319288-7319307 | None:intergenic | 30.0% | |
| AATTTGAACTTGGAACCATT+TGG | - | chr5.3:7319437-7319456 | MS.gene21482:CDS | 30.0% | |
| AGAAGAAAGAGAGAAATTAG+CGG | + | chr5.3:7319216-7319235 | None:intergenic | 30.0% | |
| AGAAGTTGAGTAGTTATTTG+TGG | + | chr5.3:7319024-7319043 | None:intergenic | 30.0% | |
| ATGAAAATGGGAGTTTCTAA+AGG | - | chr5.3:7319815-7319834 | MS.gene21482:CDS | 30.0% | |
| CTGTGATAGTTGAAAGTAAA+GGG | + | chr5.3:7319001-7319020 | None:intergenic | 30.0% | |
| GGGTTGTTGAATATTGTTAT+TGG | + | chr5.3:7318981-7319000 | None:intergenic | 30.0% | |
| GTTTCACCTCAAATTGAAAA+GGG | - | chr5.3:7319374-7319393 | MS.gene21482:CDS | 30.0% | |
| TGAAAATGGGAGTTTCTAAA+GGG | - | chr5.3:7319816-7319835 | MS.gene21482:CDS | 30.0% | |
| TGTTTCACCTCAAATTGAAA+AGG | - | chr5.3:7319373-7319392 | MS.gene21482:CDS | 30.0% | |
| TTACACTTTAAACCCCAATT+TGG | - | chr5.3:7319272-7319291 | MS.gene21482:CDS | 30.0% | |
| ! | CTATCATTATTTGGGTTTGA+GGG | + | chr5.3:7318950-7318969 | None:intergenic | 30.0% |
| ! | GAGTGATTTTGAATCTGAAT+TGG | - | chr5.3:7319958-7319977 | MS.gene21482:CDS | 30.0% |
| ! | GCTAGAATTAGTAACAGTTT+TGG | + | chr5.3:7319345-7319364 | None:intergenic | 30.0% |
| ! | TATCATTATTTGGGTTTGAG+GGG | + | chr5.3:7318949-7318968 | None:intergenic | 30.0% |
| ! | TTGTTGTTATTGTGACCAAA+TGG | + | chr5.3:7319455-7319474 | None:intergenic | 30.0% |
| !! | ATTAGTAACAGTTTTGGTGT+TGG | + | chr5.3:7319339-7319358 | None:intergenic | 30.0% |
| !! | GTTGTTGTTGAATTTTCGTT+GGG | - | chr5.3:7319586-7319605 | MS.gene21482:CDS | 30.0% |
| !! | TTGTTGTTGAATTTTCGTTG+GGG | - | chr5.3:7319587-7319606 | MS.gene21482:CDS | 30.0% |
| !!! | CATTGTTGTTTTGGAATTTG+AGG | + | chr5.3:7318914-7318933 | None:intergenic | 30.0% |
| !!! | TTTCACTGTTTTTAGCATCT+GGG | + | chr5.3:7319505-7319524 | None:intergenic | 30.0% |
| !!! | TTTTCACTGTTTTTAGCATC+TGG | + | chr5.3:7319506-7319525 | None:intergenic | 30.0% |
| AAAGAGAAAGAAGGAAGAAG+AGG | + | chr5.3:7319254-7319273 | None:intergenic | 35.0% | |
| AAGAGAAAGAAGGAAGAAGA+GGG | + | chr5.3:7319253-7319272 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGTTG+TGG | + | chr5.3:7319120-7319139 | None:intergenic | 35.0% | |
| AGAGAGAAATGACCAAATTG+GGG | + | chr5.3:7319287-7319306 | None:intergenic | 35.0% | |
| CACAATAACAACAACAACGT+TGG | - | chr5.3:7319461-7319480 | MS.gene21482:CDS | 35.0% | |
| CTTTCAACAAATTTCCCAAC+TGG | - | chr5.3:7319059-7319078 | MS.gene21482:CDS | 35.0% | |
| GAAGAGAGAAATGACCAAAT+TGG | + | chr5.3:7319289-7319308 | None:intergenic | 35.0% | |
| GAATGTTGAGAAGGAGAATA+AGG | - | chr5.3:7319769-7319788 | MS.gene21482:CDS | 35.0% | |
| GCTGTGATAGTTGAAAGTAA+AGG | + | chr5.3:7319002-7319021 | None:intergenic | 35.0% | |
| TGAACCAAAAAGACCTAAAC+CGG | + | chr5.3:7319168-7319187 | None:intergenic | 35.0% | |
| ! | AAATCCGGTTTAGGTCTTTT+TGG | - | chr5.3:7319161-7319180 | MS.gene21482:CDS | 35.0% |
| ! | ACACAACCCTTTTCAATTTG+AGG | + | chr5.3:7319383-7319402 | None:intergenic | 35.0% |
| ! | ATTTGAGGTGAAACAGAAAG+AGG | + | chr5.3:7319368-7319387 | None:intergenic | 35.0% |
| ! | CAAGTTCAAATTTTGCCAAC+CGG | + | chr5.3:7319429-7319448 | None:intergenic | 35.0% |
| ! | GAAGGAGATGAAAATGGATT+TGG | - | chr5.3:7319745-7319764 | MS.gene21482:CDS | 35.0% |
| ! | GCTATCATTATTTGGGTTTG+AGG | + | chr5.3:7318951-7318970 | None:intergenic | 35.0% |
| ! | TAATTGTGAAGGTGATTTGC+AGG | - | chr5.3:7319718-7319737 | MS.gene21482:CDS | 35.0% |
| ! | TTTGAGGTGAAACAGAAAGA+GGG | + | chr5.3:7319367-7319386 | None:intergenic | 35.0% |
| !! | GAATAAAATTGGGTTGGAGA+GGG | - | chr5.3:7319658-7319677 | MS.gene21482:CDS | 35.0% |
| !! | GGTTGTTGTTGAATTTTCGT+TGG | - | chr5.3:7319585-7319604 | MS.gene21482:CDS | 35.0% |
| !! | TGAATAAAATTGGGTTGGAG+AGG | - | chr5.3:7319657-7319676 | MS.gene21482:CDS | 35.0% |
| AAAGACCTAAACCGGATTTG+AGG | + | chr5.3:7319160-7319179 | None:intergenic | 40.0% | |
| AAATTAGCGGAGAAGACAAG+AGG | + | chr5.3:7319203-7319222 | None:intergenic | 40.0% | |
| AACAACAACAACGTTGGTGT+TGG | - | chr5.3:7319467-7319486 | MS.gene21482:CDS | 40.0% | |
| AAGACAAGAGGAGAATGATG+AGG | + | chr5.3:7319191-7319210 | None:intergenic | 40.0% | |
| AAGACCTAAACCGGATTTGA+GGG | + | chr5.3:7319159-7319178 | None:intergenic | 40.0% | |
| AGAGAAAGAAGGAAGAAGAG+GGG | + | chr5.3:7319252-7319271 | None:intergenic | 40.0% | |
| CGGTTGGCAAAATTTGAACT+TGG | - | chr5.3:7319427-7319446 | MS.gene21482:CDS | 40.0% | |
| GAAGAAGTTGTGGTTGTTGT+TGG | + | chr5.3:7319110-7319129 | None:intergenic | 40.0% | |
| GAGTAAGAGAGTTTGAAGGT+TGG | + | chr5.3:7319086-7319105 | None:intergenic | 40.0% | |
| GGATTTGGAGAATGTTGAGA+AGG | - | chr5.3:7319760-7319779 | MS.gene21482:CDS | 40.0% | |
| GGCAGTGAATAAAATTGGGT+TGG | - | chr5.3:7319652-7319671 | MS.gene21482:CDS | 40.0% | |
| GGGGTTGAAAATGCCATATT+TGG | - | chr5.3:7319631-7319650 | MS.gene21482:CDS | 40.0% | |
| GGTGAGAGCTTTCAAAGTTT+AGG | - | chr5.3:7319869-7319888 | MS.gene21482:CDS | 40.0% | |
| GGTGTAAGAATCTGAGAGAA+CGG | + | chr5.3:7319318-7319337 | None:intergenic | 40.0% | |
| TATGGTCTTTCACCTTGTGT+TGG | - | chr5.3:7319527-7319546 | MS.gene21482:CDS | 40.0% | |
| TGGAGAGTAAGAGAGTTTGA+AGG | + | chr5.3:7319090-7319109 | None:intergenic | 40.0% | |
| ! | AATGGGAGTTTCTAAAGGGA+AGG | - | chr5.3:7319820-7319839 | MS.gene21482:CDS | 40.0% |
| ! | GTTGTGTTCCTTTTCCTGAA+GGG | - | chr5.3:7319396-7319415 | MS.gene21482:CDS | 40.0% |
| ! | TGTGAGTTTTCCAGGGAAAT+CGG | - | chr5.3:7319610-7319629 | MS.gene21482:CDS | 40.0% |
| !! | TTCACCTTGTGTTGGTGTTA+TGG | - | chr5.3:7319535-7319554 | MS.gene21482:CDS | 40.0% |
| AACAACAACCCTTGTGTCAC+CGG | + | chr5.3:7319575-7319594 | None:intergenic | 45.0% | |
| AGTTTGAAGGTTGGACCAGT+TGG | + | chr5.3:7319077-7319096 | None:intergenic | 45.0% | |
| CTAGCCATAACACCAACACA+AGG | + | chr5.3:7319542-7319561 | None:intergenic | 45.0% | |
| GAAGAACACCCTTCAGGAAA+AGG | + | chr5.3:7319407-7319426 | None:intergenic | 45.0% | |
| GATTTGAGGGAGAGAGAGAA+AGG | + | chr5.3:7319146-7319165 | None:intergenic | 45.0% | |
| GTTTGAAGGTTGGACCAGTT+GGG | + | chr5.3:7319076-7319095 | None:intergenic | 45.0% | |
| TTCTCTCTCTCCCTCAAATC+CGG | - | chr5.3:7319146-7319165 | MS.gene21482:CDS | 45.0% | |
| ! | ATTTTCAACCCCGATTTCCC+TGG | + | chr5.3:7319623-7319642 | None:intergenic | 45.0% |
| ! | GGTGCTGAAGGAGATGAAAA+TGG | - | chr5.3:7319739-7319758 | MS.gene21482:CDS | 45.0% |
| ! | GGTTGTGTTCCTTTTCCTGA+AGG | - | chr5.3:7319395-7319414 | MS.gene21482:CDS | 45.0% |
| ! | GTGAGTTTTCCAGGGAAATC+GGG | - | chr5.3:7319611-7319630 | MS.gene21482:CDS | 45.0% |
| ! | TGAGTTTTCCAGGGAAATCG+GGG | - | chr5.3:7319612-7319631 | MS.gene21482:CDS | 45.0% |
| !! | AACAACGTTGGTGTTGGTGT+TGG | - | chr5.3:7319473-7319492 | MS.gene21482:CDS | 45.0% |
| !! | AAGCAGAAGCAGAAGCATTC+AGG | - | chr5.3:7319848-7319867 | MS.gene21482:CDS | 45.0% |
| !! | ACAACGTTGGTGTTGGTGTT+GGG | - | chr5.3:7319474-7319493 | MS.gene21482:CDS | 45.0% |
| !! | CTTGTGTTGGTGTTATGGCT+AGG | - | chr5.3:7319540-7319559 | MS.gene21482:CDS | 45.0% |
| !! | TGTTGGTGTTATGGCTAGGA+CGG | - | chr5.3:7319544-7319563 | MS.gene21482:CDS | 45.0% |
| !! | TTTCCTGAAGGGTGTTCTTC+CGG | - | chr5.3:7319407-7319426 | MS.gene21482:CDS | 45.0% |
| AGGAAGAAGAGGGGTAGAAG+AGG | + | chr5.3:7319243-7319262 | None:intergenic | 50.0% | |
| CTCTCCCTCAAATCCGGTTT+AGG | - | chr5.3:7319152-7319171 | MS.gene21482:CDS | 50.0% | |
| ! | GTTGGGGTGTGAGTTTTCCA+GGG | - | chr5.3:7319603-7319622 | MS.gene21482:CDS | 50.0% |
| !! | AGGTGATTTGCAGGTGCTGA+AGG | - | chr5.3:7319727-7319746 | MS.gene21482:CDS | 50.0% |
| !! | CAACGTTGGTGTTGGTGTTG+GGG | - | chr5.3:7319475-7319494 | MS.gene21482:CDS | 50.0% |
| CAACCGGAAGAACACCCTTC+AGG | + | chr5.3:7319413-7319432 | None:intergenic | 55.0% | |
| TATGGCTAGGACGGTGATGC+CGG | - | chr5.3:7319553-7319572 | MS.gene21482:CDS | 55.0% | |
| ! | CGTTGGGGTGTGAGTTTTCC+AGG | - | chr5.3:7319602-7319621 | MS.gene21482:CDS | 55.0% |
| !! | CTGAAGGGTGTTCTTCCGGT+TGG | - | chr5.3:7319411-7319430 | MS.gene21482:CDS | 55.0% |
| ACGGTGATGCCGGTGACACA+AGG | - | chr5.3:7319563-7319582 | MS.gene21482:CDS | 60.0% | |
| CGGTGATGCCGGTGACACAA+GGG | - | chr5.3:7319564-7319583 | MS.gene21482:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 7318900 | 7320015 | 7318900 | ID=MS.gene21482 |
| chr5.3 | mRNA | 7318900 | 7320015 | 7318900 | ID=MS.gene21482.t1;Parent=MS.gene21482 |
| chr5.3 | exon | 7318900 | 7320015 | 7318900 | ID=MS.gene21482.t1.exon1;Parent=MS.gene21482.t1 |
| chr5.3 | CDS | 7318900 | 7320015 | 7318900 | ID=cds.MS.gene21482.t1;Parent=MS.gene21482.t1 |
| Gene Sequence |
| Protein sequence |
