AlfalfaGEDB | MS.gene069995

M. sativa cultivar XinJiangDaYe / MS.gene069995

KEGG: K05298
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0006006 GO:0008150 GO:0008152 GO:0016491 GO:0016620 GO:0016903 GO:0019318 GO:0036094 GO:0044238 GO:0044281 GO:0048037 GO:0050661 GO:0050662 GO:0051287 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363
PFAM: PF00044.27 PF02800.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069995.t1	XP_003603851.1	99.3	451	3	0	1	451	1	451	1.90E-252	881.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069995.t1	P12859	94.2	451	26	0	1	451	1	451	7.2e-245	847.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069995.t1	G7J5Y4	99.3	451	3	0	1	451	1	451	1.3e-252	881.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene069995	0.833431	5.36E-56	-1.69E-46
MS.gene049171	MS.gene069995	0.939722	7.87E-100	-1.69E-46
MS.gene049173	MS.gene069995	0.899999	1.14E-77	-1.69E-46
MS.gene049217	MS.gene069995	0.914263	2.35E-84	-1.69E-46
MS.gene049222	MS.gene069995	0.932696	5.78E-95	-1.69E-46
MS.gene049232	MS.gene069995	0.888945	3.76E-73	-1.69E-46
MS.gene049259	MS.gene069995	-0.806008	1.01E-49	-1.69E-46
MS.gene049281	MS.gene069995	-0.824134	9.52E-54	-1.69E-46
MS.gene049285	MS.gene069995	0.970732	4.57E-132	-1.69E-46
MS.gene049313	MS.gene069995	-0.815485	9.02E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene027071	MS.gene069995	PPI
MS.gene027074	MS.gene069995	PPI
MS.gene069995	MS.gene024753	PPI
MS.gene069995	MS.gene72216	PPI
MS.gene069995	MS.gene21888	PPI
MS.gene069995	MS.gene91851	PPI
MS.gene069995	MS.gene82740	PPI
MS.gene069995	MS.gene52287	PPI
MS.gene069995	MS.gene027072	PPI
MS.gene069995	MS.gene51927	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069995.t1	MTR_3g115920	99.335	451	3	0	1	451	1	451	0.0	917
MS.gene069995.t1	MTR_3g115920	100.000	407	0	0	1	407	1	407	0.0	827
MS.gene069995.t1	MTR_3g115920	99.054	317	3	0	135	451	1	317	0.0	643
MS.gene069995.t1	MTR_7g084800	74.742	388	90	5	38	422	21	403	0.0	527
MS.gene069995.t1	MTR_2g065470	51.045	335	156	6	82	414	20	348	2.29e-108	325
MS.gene069995.t1	MTR_2g065470	45.346	419	212	10	1	414	1	407	5.71e-108	326
MS.gene069995.t1	MTR_2g065470	50.610	328	154	6	82	407	79	400	3.29e-104	316
MS.gene069995.t1	MTR_4g103920	48.680	341	166	7	84	421	4	338	1.16e-100	304
MS.gene069995.t1	MTR_3g085850	47.447	333	166	7	85	414	6	332	2.39e-100	303
MS.gene069995.t1	MTR_6g022630	46.951	328	165	7	83	407	1	322	1.26e-95	291

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069995.t1	AT1G42970	84.989	453	60	3	1	451	1	447	0.0	767
MS.gene069995.t1	AT1G12900	75.325	385	92	3	38	422	59	440	0.0	543
MS.gene069995.t1	AT1G12900	75.325	385	92	3	38	422	17	398	0.0	541
MS.gene069995.t1	AT3G26650	75.969	387	85	6	39	422	14	395	0.0	534
MS.gene069995.t1	AT1G12900	81.395	344	61	3	79	422	9	349	0.0	522
MS.gene069995.t1	AT1G12900	81.395	344	61	3	79	422	9	349	0.0	522
MS.gene069995.t1	AT1G12900	85.600	250	33	3	173	422	70	316	9.06e-134	388
MS.gene069995.t1	AT1G79530	51.603	343	158	6	79	419	80	416	1.17e-111	335
MS.gene069995.t1	AT1G16300	44.988	409	202	9	28	419	12	414	4.13e-108	326
MS.gene069995.t1	AT3G04120	48.348	333	163	7	85	414	5	331	1.34e-100	304

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Find 143 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTGAGAGGCCTTTGA+TGG	0.466577	3.1:+91567448	None:intergenic
AAAGCCTTACCTTATGATGT+CGG	0.566701	3.1:+91565905	None:intergenic
AAAGGGAGCAAGACAGTTTG+TGG	0.498610	3.1:+91565733	None:intergenic
AACATTGTCCCCACCAGCAC+AGG	0.520340	3.1:-91565208	MS.gene069995:CDS
AAGATCCTGGATGAAGAATT+CGG	0.462539	3.1:-91565707	MS.gene069995:intron
AAGCACAAGATTTCCATCAA+AGG	0.632662	3.1:-91567461	MS.gene069995:CDS
AAGCTTCCTTGGGCTGAGCT+TGG	0.444289	3.1:-91566250	MS.gene069995:CDS
AAGGTAGCAATCAATGGTTT+CGG	0.472649	3.1:-91566620	MS.gene069995:CDS
AAGTTAAAGGTAGCAATCAA+TGG	0.481757	3.1:-91566626	MS.gene069995:CDS
AATGAGACTATTACAGTTGA+TGG	0.355152	3.1:-91566310	MS.gene069995:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTAAAGGTAGCAATCAA+TGG	-	chr3.1:91565189-91565208	MS.gene069995:CDS	30.0%
AATGAGACTATTACAGTTGA+TGG	-	chr3.1:91565505-91565524	MS.gene069995:intron	30.0%
ATAAACTTTGCATTCCTCAT+CGG	+	chr3.1:91567499-91567518	None:intergenic	30.0%
ATGAAACAAAGCAATCATGA+AGG	+	chr3.1:91564439-91564458	None:intergenic	30.0%
CATCTTTGATCTATATTTCC+AGG	-	chr3.1:91566213-91566232	MS.gene069995:intron	30.0%
GTCAATAGTTGAAGAAACAT+CGG	+	chr3.1:91566866-91566885	None:intergenic	30.0%
GTTTATCCTAAAAAGATGCA+TGG	+	chr3.1:91567051-91567070	None:intergenic	30.0%
TAAGTAACATCTTTGGTTAC+TGG	-	chr3.1:91565077-91565096	MS.gene069995:CDS	30.0%
TGAAAATACAAGCATGTGAT+TGG	-	chr3.1:91565642-91565661	MS.gene069995:intron	30.0%
TGACACGAAACTTCATTATA+TGG	+	chr3.1:91566976-91566995	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	91564313	91567524	91564313	ID=MS.gene069995
chr3.1	mRNA	91564313	91567524	91564313	ID=MS.gene069995.t1;Parent=MS.gene069995
chr3.1	exon	91567426	91567524	91567426	ID=MS.gene069995.t1.exon1;Parent=MS.gene069995.t1
chr3.1	CDS	91567426	91567524	91567426	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91567223	91567336	91567223	ID=MS.gene069995.t1.exon2;Parent=MS.gene069995.t1
chr3.1	CDS	91567223	91567336	91567223	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91566526	91566687	91566526	ID=MS.gene069995.t1.exon3;Parent=MS.gene069995.t1
chr3.1	CDS	91566526	91566687	91566526	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91566231	91566398	91566231	ID=MS.gene069995.t1.exon4;Parent=MS.gene069995.t1
chr3.1	CDS	91566231	91566398	91566231	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91565915	91566075	91565915	ID=MS.gene069995.t1.exon5;Parent=MS.gene069995.t1
chr3.1	CDS	91565915	91566075	91565915	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91565708	91565769	91565708	ID=MS.gene069995.t1.exon6;Parent=MS.gene069995.t1
chr3.1	CDS	91565708	91565769	91565708	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91565553	91565602	91565553	ID=MS.gene069995.t1.exon7;Parent=MS.gene069995.t1
chr3.1	CDS	91565553	91565602	91565553	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91564878	91565284	91564878	ID=MS.gene069995.t1.exon8;Parent=MS.gene069995.t1
chr3.1	CDS	91564878	91565284	91564878	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1
chr3.1	exon	91564313	91564445	91564313	ID=MS.gene069995.t1.exon9;Parent=MS.gene069995.t1
chr3.1	CDS	91564313	91564445	91564313	ID=cds.MS.gene069995.t1;Parent=MS.gene069995.t1

Gene Sequence

>MS.gene069995

ATGGCCACCCATGCAGCTTTAGCTTCTACAAGAATCCCTACAAGCACAAGATTTCCATCAAAGGCCTCTCACTCTTTCCCAACTCAATGTGCCTCAAAGGTTTCACTCTCACTGTGGTTGTGTCCTTCATGATTGCTTTGTTTCATATCTTAATTTAAAGTGTCTTATACTTCACTTTGCTTGTGCAGAGACTTGAGGTGGCTGAATTCAGTGGACTAAAATCAACTTCATGCATTACCTATGCTAGTAATGCTAGAGAGTCTTCTTTTTCTGATGTTGTAGCTGCTCAACTCGCAACCAAGGTTATTTTCTAGTTACATATTTTATATATCTCATTGGATCATGAGAGATTCCATCCTTCTTTTATATGTCGCATAAATGTATTAGCTCTGATGAAGCACCGACACAAACACCAAATACGACACTGATTTGTCGACAATGGTAATAGTTTGGAAAATGAAATAATTGAATGTAATCACATGTGTCGGTGTCAAACACCGACATGTTTTGGACACTAGACACACCTGTAATCTGAATCGTCGGTATTGCATATTTGTGCTACATAGATTAGCTCTAAATATCTTCTTTGTAGCTAAATAATATATTTATCATTAGATAAATTATCATACTTAGATACCCTTCATCCATAAAATGTTGGAACCATAACATATTTGCATGGAAGCAACAACAAAATTGTAGTTAAATGTCTCCTTTTAAAGCCATTCTCTTAAATCCCTTAAAGATCATTAAAGTGATATTACAATTAAGTAACATCTTTGGTTACTGGACTGGAGCTAAATAAATTCAATTTGCTTATGGTTTGCAAATTATAATCAGGCCATTGGATCAACTGCTGTGAGGGGAGAGACTGTTGCTAAGTTAAAGGTAGCAATCAATGGTTTCGGACGCATTGGTAGAAATTTCCTGAGATGCTGGCACGGTCGAAAGGACTCGCCACTTGAAGTAATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTAAGTTTTCAAATGTCATTGCTTCTTTAATTGTGTTGACTTAGTTTGCTTTGGTACTACAAACTAATTAGTTTCACTGAATTGAATGGAATAGTAATAGTGACATCCTCTTGTTTCACATATTCAGGCTTCACACTTGTTGAAATATGATTCTATGCTTGGAACATTTAAAGCAGATGTGAAAATACTAAACAATGAGACTATTACAGTTGATGGTAAGCCCATCCTTGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGACATTGTCATTGAGGTAAATTCAAACATCATCAATTGTAGGCCACAAAATGAAAATACAAGCATGTGATTGGTTCATCAACATAGTACTGTTTTATGAAAAATACGAAAAGAAAAATTTTCTGAATGTACTCGAGAGAATTTTTTTAAAGTTAATGAATTTTTGTTCAGGGAACTGGAGTGTTTGTGGATGGCCCTGGAGCCGGAAAGCACATCCAAGCAGGTGCCAAGAAAGTTATCATCACAGCTCCTGCAAAGGGCGCTGATATTCCAACTTACGTTGTTGGAGTAAATGAGCAAGACTACGGCCATGAAGTAGCCGACATCATAAGGTAAGGCTTTAATGTTTAAACTGTTTACCTCGTTGTGGATGTTGAGGTTGAGAACAAGGGTATCACAGCTGAGAATGTCAATGCAAGATAGTGTTAGTGTTTTGATTGATTATTCATATTCATTCTTATGTTTCTTAATGTACAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGAAGAATTCGGTAAGCAAAAATTCTGATACTCATCATACTGATAGCTAAGATTGTAACAGCAACATTTGATTCCTAGCTCAAAGCCACTTAATCATCTTTGATCTATATTTCCAGGAATTGTTAAGGGAACCATGACAACCACACATTCCTACACAGGAGACCAGGTATATTATCAAACATCATATGTTTGTTGGAACTGAAAGCTTGTTTTACTTATGCGTGGTCCATTATTTATTTCCAATAGCTTCCTAGTCAATCTTCCAACTGAAAATGGATAAGAAGTTACAATAAGGCTCAGCTTGATCTCACTTATTTTTGACTACTTGAGCACTATTTCTAAAGCTCTTATTTTAATTTTAATATAAATACAAAGTGATTTTTAGTGCCGAAACAAATCAAGCCTAACAAAGTCTAAAAGTTGTGTTTGTGCAGAGGCTTCTGGATGCTTCACACAGGGACTTGAGAAGAGCCAGGGCTGCAGCGCTGAACATTGTCCCCACCAGCACAGGAGCAGCCAAGGCTGTCTCTCTAGTGCTGCCACAGCTCAAGGGAAAGCTCAACGGAATCGCCCTTCGTGTGCCAACACCTAATGTTTCAGTTGTTGACCTTGTGGTGAATGTTGCGAAGAAGGGTATTTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAGGGACCATTGAAAGGTGTATTGGATGTCTGTGATGTTCCACTTGTGTCTGTTGACTTCCGCTGCACCGATGTTTCTTCAACTATTGACTCTTCCTTGACTATGGTCATGGGAGATGATATGGTCAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGGTTAGATTACTATCCATATAATGAAGTTTCGTGTCATATAACTATTTTATTTATTTATTTTCCATTCCAGTATATACAAATAGAACATCCATGCATCTTTTTAGGATAAACAACTTACTTAAGCGCTTATCACAAAGTGCTTATGTACAAGTTCTTTCAATAATAAAAGCTAAAATAAAGTCAATGTTTTCATAAGCTATCACGAAGAGCTTATGTAAATAATCTAAAAAGAACTTATGGACATGTGATAAACTGTTTCTACAAGTTCTCACAAACAATATATTAAGTGTTTATTTCAATAGAAAAGTTCAAATAAGTCAACCCAAACAGACCTCAAACGATGAAAGTTGCTGCTGGAGTTGTTGACTTTTTGTGTACTTGTAATATAGATATAGATCATGTTATTGATTGTTACAATGTTGGTGATTTCAGTCAAAGAGTGGTGGATTTGGCACATCTAGTAGCAAACAAATGGCCAGGCACCCCTCAAGCAGGAAGTGGAGATCCATTGGAGGACTTCTGTGAGACAAACCCGTCCGATGAGGAATGCAAAGTTTATGAATAG

Protein sequence

>MS.gene069995.t1

MATHAALASTRIPTSTRFPSKASHSFPTQCASKRLEVAEFSGLKSTSCITYASNARESSFSDVVAAQLATKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNNETITVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYGHEVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPQAGSGDPLEDFCETNPSDEECKVYE