Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061962.t1 | XP_003619012.1 | 95.1 | 386 | 19 | 0 | 1 | 386 | 1 | 386 | 6.20E-212 | 746.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061962.t1 | Q9C503 | 42.7 | 372 | 167 | 9 | 19 | 385 | 23 | 353 | 1.0e-69 | 265.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061962.t1 | G7KQ57 | 95.1 | 386 | 19 | 0 | 1 | 386 | 1 | 386 | 4.4e-212 | 746.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene061962 | 0.827813 | 1.27E-54 | -1.69E-46 |
| MS.gene049171 | MS.gene061962 | 0.800304 | 1.54E-48 | -1.69E-46 |
| MS.gene049265 | MS.gene061962 | -0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene061962 | 0.818457 | 1.94E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene061962 | 0.82451 | 7.76E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene061962 | 0.818902 | 1.54E-52 | -1.69E-46 |
| MS.gene050076 | MS.gene061962 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene061962 | 0.845948 | 2.95E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene061962 | 0.800838 | 1.19E-48 | -1.69E-46 |
| MS.gene050529 | MS.gene061962 | 0.812376 | 4.37E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene061962 | 0.824185 | 9.26E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene061962 | 0.814427 | 1.55E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene061962 | 0.801049 | 1.08E-48 | -1.69E-46 |
| MS.gene05081 | MS.gene061962 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene061962 | 0.807869 | 4.09E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene061962 | 0.852186 | 5.45E-61 | -1.69E-46 |
| MS.gene051692 | MS.gene061962 | 0.807632 | 4.60E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene061962 | 0.805722 | 1.16E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene061962 | 0.847303 | 1.26E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene061962 | 0.833183 | 6.17E-56 | -1.69E-46 |
| MS.gene052322 | MS.gene061962 | 0.807947 | 3.94E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene061962 | 0.834482 | 2.92E-56 | -1.69E-46 |
| MS.gene052481 | MS.gene061962 | 0.834793 | 2.44E-56 | -1.69E-46 |
| MS.gene052501 | MS.gene061962 | 0.823874 | 1.09E-53 | -1.69E-46 |
| MS.gene052505 | MS.gene061962 | 0.819777 | 9.72E-53 | -1.69E-46 |
| MS.gene052615 | MS.gene061962 | 0.819185 | 1.33E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene061962 | 0.826224 | 3.05E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene061962 | 0.825991 | 3.47E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene061962 | 0.808078 | 3.70E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene061962 | 0.810313 | 1.23E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene061962 | 0.80873 | 2.68E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene061962 | 0.816429 | 5.55E-52 | -1.69E-46 |
| MS.gene053579 | MS.gene061962 | 0.812616 | 3.88E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene061962 | 0.800467 | 1.42E-48 | -1.69E-46 |
| MS.gene053971 | MS.gene061962 | 0.804358 | 2.25E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene061962 | 0.800917 | 1.15E-48 | -1.69E-46 |
| MS.gene054802 | MS.gene061962 | 0.802967 | 4.36E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene061962 | 0.801043 | 1.08E-48 | -1.69E-46 |
| MS.gene054884 | MS.gene061962 | -0.832462 | 9.32E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene061962 | 0.802656 | 5.06E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene061962 | 0.864503 | 1.16E-64 | -1.69E-46 |
| MS.gene055289 | MS.gene061962 | 0.850381 | 1.76E-60 | -1.69E-46 |
| MS.gene055370 | MS.gene061962 | 0.857431 | 1.64E-62 | -1.69E-46 |
| MS.gene055502 | MS.gene061962 | 0.801679 | 8.04E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene061962 | 0.80064 | 1.31E-48 | -1.69E-46 |
| MS.gene055722 | MS.gene061962 | 0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene056374 | MS.gene061962 | 0.806969 | 6.36E-50 | -1.69E-46 |
| MS.gene056633 | MS.gene061962 | 0.813559 | 2.41E-51 | -1.69E-46 |
| MS.gene056664 | MS.gene061962 | 0.80495 | 1.69E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene061962 | 0.8064 | 8.38E-50 | -1.69E-46 |
| MS.gene056877 | MS.gene061962 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene057011 | MS.gene061962 | 0.811254 | 7.67E-51 | -1.69E-46 |
| MS.gene057048 | MS.gene061962 | 0.811827 | 5.76E-51 | -1.69E-46 |
| MS.gene057123 | MS.gene061962 | 0.806849 | 6.74E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene061962 | 0.820309 | 7.34E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene061962 | 0.824241 | 8.98E-54 | -1.69E-46 |
| MS.gene057196 | MS.gene061962 | 0.87651 | 1.32E-68 | -1.69E-46 |
| MS.gene057261 | MS.gene061962 | -0.806885 | 6.62E-50 | -1.69E-46 |
| MS.gene057332 | MS.gene061962 | 0.838364 | 3.01E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene061962 | 0.823819 | 1.13E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene061962 | 0.831265 | 1.84E-55 | -1.69E-46 |
| MS.gene057856 | MS.gene061962 | 0.812905 | 3.35E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene061962 | 0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene061962 | 0.812494 | 4.12E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene061962 | 0.842508 | 2.48E-58 | -1.69E-46 |
| MS.gene058376 | MS.gene061962 | 0.805719 | 1.17E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene061962 | 0.829745 | 4.34E-55 | -1.69E-46 |
| MS.gene058444 | MS.gene061962 | 0.815914 | 7.24E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene061962 | 0.811156 | 8.06E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene061962 | 0.811326 | 7.40E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene061962 | 0.83881 | 2.30E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene061962 | 0.825921 | 3.60E-54 | -1.69E-46 |
| MS.gene05883 | MS.gene061962 | 0.805322 | 1.41E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene061962 | 0.817506 | 3.18E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene061962 | 0.807415 | 5.11E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene061962 | 0.852419 | 4.67E-61 | -1.69E-46 |
| MS.gene059512 | MS.gene061962 | 0.826272 | 2.97E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene061962 | 0.82732 | 1.67E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene061962 | 0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene059756 | MS.gene061962 | 0.815969 | 7.04E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene061962 | 0.846196 | 2.53E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene061962 | 0.824834 | 6.51E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene061962 | 0.819155 | 1.35E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene061962 | 0.842377 | 2.68E-58 | -1.69E-46 |
| MS.gene06092 | MS.gene061962 | 0.817667 | 2.93E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene061962 | 0.816767 | 4.67E-52 | -1.69E-46 |
| MS.gene061231 | MS.gene061962 | 0.800255 | 1.57E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061962.t1 | MTR_6g032880 | 95.078 | 386 | 19 | 0 | 1 | 386 | 1 | 386 | 0.0 | 760 |
| MS.gene061962.t1 | MTR_7g085490 | 25.826 | 333 | 230 | 8 | 60 | 386 | 33 | 354 | 9.71e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061962.t1 | AT1G55370 | 43.844 | 333 | 146 | 7 | 55 | 385 | 60 | 353 | 5.27e-82 | 255 |
| MS.gene061962.t1 | AT1G55370 | 40.520 | 269 | 120 | 6 | 55 | 321 | 60 | 290 | 2.14e-51 | 174 |
| MS.gene061962.t1 | AT1G64770 | 24.561 | 342 | 231 | 9 | 53 | 386 | 26 | 348 | 3.85e-18 | 85.1 |
Find 72 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCATGATATTATATATT+TGG | 0.114257 | 6.2:-20926095 | None:intergenic |
| TTTCATGGTCTCCTTCTAAT+TGG | 0.239884 | 6.2:+20924497 | MS.gene061962:CDS |
| TGGATTGATTACTTCTTATA+AGG | 0.259146 | 6.2:+20924339 | MS.gene061962:CDS |
| TAAGGTACTGAAGCTACTTT+TGG | 0.272432 | 6.2:-20924184 | None:intergenic |
| CCTTTCTCTTCGCTCGTATT+CGG | 0.304604 | 6.2:-20925390 | None:intergenic |
| TCTTGTGGACTTAATACTAT+TGG | 0.306506 | 6.2:-20926041 | None:intergenic |
| TCAGTATTAGTTGGAAGAAA+TGG | 0.309706 | 6.2:+20925921 | MS.gene061962:CDS |
| TGTTGAATATAGCTAGAAAA+TGG | 0.311886 | 6.2:-20924133 | None:intergenic |
| TGGAAGTTGTATGGCCAAAA+TGG | 0.314849 | 6.2:+20924276 | MS.gene061962:CDS |
| CCTATTGCATAAGTTGCTTC+TGG | 0.319165 | 6.2:-20925306 | None:intergenic |
| CAATTCTGAGGAATCTATTC+AGG | 0.346682 | 6.2:+20924540 | MS.gene061962:CDS |
| GCAGTGTCAGAAGGAGAATT+TGG | 0.352287 | 6.2:+20924403 | MS.gene061962:CDS |
| TTCATGGTCTCCTTCTAATT+GGG | 0.370031 | 6.2:+20924498 | MS.gene061962:CDS |
| TTTAATCCAATCTTGTCATA+TGG | 0.386445 | 6.2:-20925168 | None:intergenic |
| GGTGTGTTTCTAGTAGATTT+TGG | 0.405033 | 6.2:-20924091 | None:intergenic |
| AGATATGAGTGGTGAGGAAA+TGG | 0.407819 | 6.2:+20925500 | MS.gene061962:CDS |
| GTGTAAACTCTCTCTTGTAT+TGG | 0.410082 | 6.2:-20924159 | None:intergenic |
| AAAATAAACTCCGATTCAAT+AGG | 0.413697 | 6.2:-20925360 | None:intergenic |
| CCAGAAGCAACTTATGCAAT+AGG | 0.428313 | 6.2:+20925306 | MS.gene061962:CDS |
| TGATTATTTGTTCCCCAACT+TGG | 0.429394 | 6.2:-20925453 | None:intergenic |
| TCTAAGTAGTCATAGTTGAT+TGG | 0.433432 | 6.2:-20924211 | None:intergenic |
| CTGTTCAGTCCAGGCTCATC+AGG | 0.435338 | 6.2:+20925960 | MS.gene061962:CDS |
| TTATGCAAAACCCAATTAGA+AGG | 0.440628 | 6.2:-20924508 | None:intergenic |
| TTTGGTGATGCTGTTATTCA+AGG | 0.448112 | 6.2:+20924421 | MS.gene061962:CDS |
| AGAAGTTAGTGGAAGTTGTA+TGG | 0.449667 | 6.2:+20924267 | MS.gene061962:CDS |
| TATTAAGTCCACAAGATGTA+TGG | 0.449867 | 6.2:+20926048 | MS.gene061962:CDS |
| AAAGGACCATATGACAAGAT+TGG | 0.464962 | 6.2:+20925162 | MS.gene061962:CDS |
| GTCACATTTGAAGAAGTTAG+TGG | 0.469323 | 6.2:+20924256 | MS.gene061962:CDS |
| AGAAGAAACTCAGTATTAGT+TGG | 0.473799 | 6.2:+20925912 | MS.gene061962:CDS |
| CCTCCTTTCCATACATCTTG+TGG | 0.478759 | 6.2:-20926056 | None:intergenic |
| CTGATGAGCCTGGACTGAAC+AGG | 0.479462 | 6.2:-20925959 | None:intergenic |
| AAAATGATGATGAAGTTTCA+TGG | 0.482731 | 6.2:+20924482 | MS.gene061962:CDS |
| AAGTTGGGGAACAAATAATC+AGG | 0.496367 | 6.2:+20925455 | MS.gene061962:CDS |
| TAGCCAACCGCCTATTGAAT+CGG | 0.500329 | 6.2:+20925350 | MS.gene061962:CDS |
| GTGGACTTAATACTATTGGT+TGG | 0.500437 | 6.2:-20926037 | None:intergenic |
| CCGAATACGAGCGAAGAGAA+AGG | 0.501208 | 6.2:+20925390 | MS.gene061962:CDS |
| CTTTCAATTCCTGATGAGCC+TGG | 0.508570 | 6.2:-20925969 | None:intergenic |
| TCAATGAGTGTAAAACTTCG+AGG | 0.509014 | 6.2:-20925573 | None:intergenic |
| ACGAGCGAAGAGAAAGGATT+CGG | 0.512710 | 6.2:+20925396 | MS.gene061962:CDS |
| ATTAAAATACATTGTGACAT+TGG | 0.516339 | 6.2:+20925185 | MS.gene061962:CDS |
| TACTGTCAAATGACTAAGGA+TGG | 0.517706 | 6.2:-20925277 | None:intergenic |
| TCATAGTTGATTGGTTGGTA+AGG | 0.520007 | 6.2:-20924202 | None:intergenic |
| TCTTTGCCACTTCAAATGAC+AGG | 0.523333 | 6.2:+20925252 | MS.gene061962:CDS |
| AGTAGTCATAGTTGATTGGT+TGG | 0.527301 | 6.2:-20924207 | None:intergenic |
| ATTGTGACATTGGAAGAAGA+TGG | 0.536047 | 6.2:+20925195 | MS.gene061962:CDS |
| TACTTAGAACAAGAATTCAA+TGG | 0.537821 | 6.2:+20924226 | MS.gene061962:CDS |
| TGCTTACTGTCAAATGACTA+AGG | 0.541257 | 6.2:-20925281 | None:intergenic |
| GGTAAACAAATATGTGATGA+TGG | 0.544469 | 6.2:-20924112 | None:intergenic |
| ACATTGGAAGAAGATGGATT+AGG | 0.545100 | 6.2:+20925201 | MS.gene061962:CDS |
| GACTTAATACTATTGGTTGG+AGG | 0.550217 | 6.2:-20926034 | None:intergenic |
| GAAACATACCTGTTCAGTCC+AGG | 0.552112 | 6.2:+20925951 | MS.gene061962:CDS |
| TTCTCTTCGCTCGTATTCGG+AGG | 0.567150 | 6.2:-20925387 | None:intergenic |
| CTTAATACTGCAGTGTCAGA+AGG | 0.569822 | 6.2:+20924394 | MS.gene061962:CDS |
| ATGGAACCTGTCATTTGAAG+TGG | 0.582698 | 6.2:-20925258 | None:intergenic |
| GAACAAGAATTCAATGGACA+TGG | 0.592739 | 6.2:+20924232 | MS.gene061962:CDS |
| TAGTGAAGATATGAGTGGTG+AGG | 0.600735 | 6.2:+20925494 | MS.gene061962:CDS |
| CAATCCACTTGGTAGCAACA+TGG | 0.606969 | 6.2:-20924323 | None:intergenic |
| ACTCCGATTCAATAGGCGGT+TGG | 0.609687 | 6.2:-20925353 | None:intergenic |
| GCTACCATGTTGCTACCAAG+TGG | 0.611640 | 6.2:+20924319 | MS.gene061962:CDS |
| TGTCATTTGAAGTGGCAAAG+AGG | 0.615397 | 6.2:-20925250 | None:intergenic |
| GAAGATAGTGAAGATATGAG+TGG | 0.615779 | 6.2:+20925489 | MS.gene061962:CDS |
| AAGTATGCTTACATATGTGT+TGG | 0.616114 | 6.2:+20925999 | MS.gene061962:CDS |
| AGTCCACAAGATGTATGGAA+AGG | 0.619952 | 6.2:+20926053 | MS.gene061962:CDS |
| ATAAACTCCGATTCAATAGG+CGG | 0.624784 | 6.2:-20925357 | None:intergenic |
| CAGGTAGTATTAATAAACAA+AGG | 0.628059 | 6.2:+20925144 | MS.gene061962:intron |
| CTTCTTATAAGGCACCTATG+TGG | 0.628349 | 6.2:+20924350 | MS.gene061962:CDS |
| TATAAGGCACCTATGTGGCA+TGG | 0.628930 | 6.2:+20924355 | MS.gene061962:CDS |
| CCACAAGATGTATGGAAAGG+AGG | 0.629918 | 6.2:+20926056 | MS.gene061962:CDS |
| GGTGATGCTGTTATTCAAGG+AGG | 0.632525 | 6.2:+20924424 | MS.gene061962:CDS |
| TAATATTAAAGGCAATTCTG+AGG | 0.647761 | 6.2:+20924528 | MS.gene061962:CDS |
| TAAGAAGTAATCAATCCACT+TGG | 0.665933 | 6.2:-20924334 | None:intergenic |
| AAGGCACCTATGTGGCATGG+TGG | 0.667629 | 6.2:+20924358 | MS.gene061962:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTTTTTTTAATC+AGG | + | chr6.2:20925887-20925906 | MS.gene061962:intron | 10.0% |
| !! | ATAAGATTAAAATAAAGTCA+AGG | + | chr6.2:20925696-20925715 | MS.gene061962:intron | 15.0% |
| !! | ATTAATTAAAGTTGTATTGA+TGG | + | chr6.2:20924979-20924998 | MS.gene061962:intron | 15.0% |
| !! | TAAGATTAAAATAAAGTCAA+GGG | + | chr6.2:20925697-20925716 | MS.gene061962:intron | 15.0% |
| !! | ATTAAAATACATTGTGACAT+TGG | + | chr6.2:20925185-20925204 | MS.gene061962:CDS | 20.0% |
| !! | CTGTTTAATGGTTATTATTA+GGG | + | chr6.2:20924564-20924583 | MS.gene061962:intron | 20.0% |
| !! | TATCATTAAATCTATTGTTG+AGG | - | chr6.2:20925618-20925637 | None:intergenic | 20.0% |
| !! | TCTGTTTAATGGTTATTATT+AGG | + | chr6.2:20924563-20924582 | MS.gene061962:intron | 20.0% |
| !! | TTAAGCTGTTTATTCATAAA+TGG | - | chr6.2:20925661-20925680 | None:intergenic | 20.0% |
| !!! | AGATTTTGGTATGAAAATAT+TGG | - | chr6.2:20924080-20924099 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTGATCAATGAA+GGG | + | chr6.2:20925812-20925831 | MS.gene061962:intron | 20.0% |
| !!! | TTTGTAATTTTGATCAATGA+AGG | + | chr6.2:20925811-20925830 | MS.gene061962:intron | 20.0% |
| ! | AAAATAAACTCCGATTCAAT+AGG | - | chr6.2:20925363-20925382 | None:intergenic | 25.0% |
| ! | AAATTGTGAGAAAAATCACA+AGG | - | chr6.2:20925080-20925099 | None:intergenic | 25.0% |
| ! | ACAATAAGTAAGTATACTGA+AGG | - | chr6.2:20924722-20924741 | None:intergenic | 25.0% |
| ! | AGAGTTATTGTGAGTATTTA+AGG | + | chr6.2:20924791-20924810 | MS.gene061962:intron | 25.0% |
| ! | CAGGTAGTATTAATAAACAA+AGG | + | chr6.2:20925144-20925163 | MS.gene061962:intron | 25.0% |
| ! | CCAACCAAAATAATAATAAG+GGG | - | chr6.2:20924943-20924962 | None:intergenic | 25.0% |
| ! | GACTAAAATGACTATTTACT+CGG | + | chr6.2:20925865-20925884 | MS.gene061962:intron | 25.0% |
| ! | GCCAACCAAAATAATAATAA+GGG | - | chr6.2:20924944-20924963 | None:intergenic | 25.0% |
| ! | TAATATTAAAGGCAATTCTG+AGG | + | chr6.2:20924528-20924547 | MS.gene061962:CDS | 25.0% |
| ! | TACTTAGAACAAGAATTCAA+TGG | + | chr6.2:20924226-20924245 | MS.gene061962:CDS | 25.0% |
| ! | TCACAATAACTCTTCATATA+GGG | - | chr6.2:20924784-20924803 | None:intergenic | 25.0% |
| ! | TGACAATAAGTAAATACCAA+AGG | - | chr6.2:20924754-20924773 | None:intergenic | 25.0% |
| ! | TGCCAACCAAAATAATAATA+AGG | - | chr6.2:20924945-20924964 | None:intergenic | 25.0% |
| ! | TGGATTGATTACTTCTTATA+AGG | + | chr6.2:20924339-20924358 | MS.gene061962:CDS | 25.0% |
| ! | TGTTGAATATAGCTAGAAAA+TGG | - | chr6.2:20924136-20924155 | None:intergenic | 25.0% |
| ! | TTATTGTCATATTAGTCCTT+TGG | + | chr6.2:20924735-20924754 | MS.gene061962:intron | 25.0% |
| ! | TTGAAATTTCGATACAATGA+GGG | - | chr6.2:20924621-20924640 | None:intergenic | 25.0% |
| ! | TTTAATCCAATCTTGTCATA+TGG | - | chr6.2:20925171-20925190 | None:intergenic | 25.0% |
| !! | AAAATGATGATGAAGTTTCA+TGG | + | chr6.2:20924482-20924501 | MS.gene061962:CDS | 25.0% |
| !! | ATTGCCCCTTATTATTATTT+TGG | + | chr6.2:20924936-20924955 | MS.gene061962:intron | 25.0% |
| !! | TGGGTTTTGCATAATATTAA+AGG | + | chr6.2:20924517-20924536 | MS.gene061962:CDS | 25.0% |
| !! | TTTGAAATTTCGATACAATG+AGG | - | chr6.2:20924622-20924641 | None:intergenic | 25.0% |
| !!! | ATTATTATTTTGGTTGGCAA+AGG | + | chr6.2:20924946-20924965 | MS.gene061962:intron | 25.0% |
| !!! | TAAGAATTTTGATGCATTGA+GGG | + | chr6.2:20924870-20924889 | MS.gene061962:intron | 25.0% |
| !!! | TCCATTTTTCAATTCCATTT+TGG | - | chr6.2:20924293-20924312 | None:intergenic | 25.0% |
| !!! | TTAAGAATTTTGATGCATTG+AGG | + | chr6.2:20924869-20924888 | MS.gene061962:intron | 25.0% |
| !!! | TTTAAGGATTATTTTAGCGT+CGG | + | chr6.2:20924807-20924826 | MS.gene061962:intron | 25.0% |
| AAGTATGCTTACATATGTGT+TGG | + | chr6.2:20925999-20926018 | MS.gene061962:CDS | 30.0% | |
| ACCTGCATAAGATATATTCA+AGG | - | chr6.2:20925129-20925148 | None:intergenic | 30.0% | |
| ACCTTGAATATATCTTATGC+AGG | + | chr6.2:20925125-20925144 | MS.gene061962:intron | 30.0% | |
| AGAAAGGATTCGGAAAAATA+TGG | + | chr6.2:20925406-20925425 | MS.gene061962:CDS | 30.0% | |
| AGAAGAAACTCAGTATTAGT+TGG | + | chr6.2:20925912-20925931 | MS.gene061962:CDS | 30.0% | |
| ATAAACTTGCGCATATACTT+AGG | + | chr6.2:20925635-20925654 | MS.gene061962:intron | 30.0% | |
| ATCTATTCAGGTCTGTTTAA+TGG | + | chr6.2:20924552-20924571 | MS.gene061962:intron | 30.0% | |
| CTCACAATAACTCTTCATAT+AGG | - | chr6.2:20924785-20924804 | None:intergenic | 30.0% | |
| GCCAAAATGGAATTGAAAAA+TGG | + | chr6.2:20924289-20924308 | MS.gene061962:CDS | 30.0% | |
| GGTAAACAAATATGTGATGA+TGG | - | chr6.2:20924115-20924134 | None:intergenic | 30.0% | |
| TAAGAAGTAATCAATCCACT+TGG | - | chr6.2:20924337-20924356 | None:intergenic | 30.0% | |
| TATTAAGTCCACAAGATGTA+TGG | + | chr6.2:20926048-20926067 | MS.gene061962:CDS | 30.0% | |
| TCAGTATTAGTTGGAAGAAA+TGG | + | chr6.2:20925921-20925940 | MS.gene061962:CDS | 30.0% | |
| TCTAAGTAGTCATAGTTGAT+TGG | - | chr6.2:20924214-20924233 | None:intergenic | 30.0% | |
| TCTTGTGGACTTAATACTAT+TGG | - | chr6.2:20926044-20926063 | None:intergenic | 30.0% | |
| TTATGCAAAACCCAATTAGA+AGG | - | chr6.2:20924511-20924530 | None:intergenic | 30.0% | |
| ! | AAGTTTTACACTCATTGACA+GGG | + | chr6.2:20925578-20925597 | MS.gene061962:CDS | 30.0% |
| ! | TAAGCAATTTTTGCCAAGTT+GGG | + | chr6.2:20925440-20925459 | MS.gene061962:CDS | 30.0% |
| ! | TTAAGCAATTTTTGCCAAGT+TGG | + | chr6.2:20925439-20925458 | MS.gene061962:CDS | 30.0% |
| !!! | CCCCTTATTATTATTTTGGT+TGG | + | chr6.2:20924940-20924959 | MS.gene061962:intron | 30.0% |
| !!! | TGGTTATTTTAGAAGTGTCT+CGG | + | chr6.2:20924999-20925018 | MS.gene061962:intron | 30.0% |
| !!! | TTAAGGATTATTTTAGCGTC+GGG | + | chr6.2:20924808-20924827 | MS.gene061962:intron | 30.0% |
| AAAGGACCATATGACAAGAT+TGG | + | chr6.2:20925162-20925181 | MS.gene061962:CDS | 35.0% | |
| AAGTTGGGGAACAAATAATC+AGG | + | chr6.2:20925455-20925474 | MS.gene061962:CDS | 35.0% | |
| AGAAGTTAGTGGAAGTTGTA+TGG | + | chr6.2:20924267-20924286 | MS.gene061962:CDS | 35.0% | |
| AGTAGTCATAGTTGATTGGT+TGG | - | chr6.2:20924210-20924229 | None:intergenic | 35.0% | |
| ATAAACTCCGATTCAATAGG+CGG | - | chr6.2:20925360-20925379 | None:intergenic | 35.0% | |
| ATTGTGACATTGGAAGAAGA+TGG | + | chr6.2:20925195-20925214 | MS.gene061962:CDS | 35.0% | |
| GAACAAGAATTCAATGGACA+TGG | + | chr6.2:20924232-20924251 | MS.gene061962:CDS | 35.0% | |
| GAAGATAGTGAAGATATGAG+TGG | + | chr6.2:20925489-20925508 | MS.gene061962:CDS | 35.0% | |
| GTCACATTTGAAGAAGTTAG+TGG | + | chr6.2:20924256-20924275 | MS.gene061962:CDS | 35.0% | |
| GTGGACTTAATACTATTGGT+TGG | - | chr6.2:20926040-20926059 | None:intergenic | 35.0% | |
| GTGTAAACTCTCTCTTGTAT+TGG | - | chr6.2:20924162-20924181 | None:intergenic | 35.0% | |
| GTTTGATTCCTGAATGTGTA+AGG | - | chr6.2:20924911-20924930 | None:intergenic | 35.0% | |
| TACTGTCAAATGACTAAGGA+TGG | - | chr6.2:20925280-20925299 | None:intergenic | 35.0% | |
| TCAATGAGTGTAAAACTTCG+AGG | - | chr6.2:20925576-20925595 | None:intergenic | 35.0% | |
| TGATTATTTGTTCCCCAACT+TGG | - | chr6.2:20925456-20925475 | None:intergenic | 35.0% | |
| TGCTTACTGTCAAATGACTA+AGG | - | chr6.2:20925284-20925303 | None:intergenic | 35.0% | |
| TTCATGGTCTCCTTCTAATT+GGG | + | chr6.2:20924498-20924517 | MS.gene061962:CDS | 35.0% | |
| TTTCATGGTCTCCTTCTAAT+TGG | + | chr6.2:20924497-20924516 | MS.gene061962:CDS | 35.0% | |
| ! | AAGCAATTTTTGCCAAGTTG+GGG | + | chr6.2:20925441-20925460 | MS.gene061962:CDS | 35.0% |
| ! | ACATTGGAAGAAGATGGATT+AGG | + | chr6.2:20925201-20925220 | MS.gene061962:CDS | 35.0% |
| ! | ATCACAAGGTGTTAGATTAG+TGG | - | chr6.2:20925066-20925085 | None:intergenic | 35.0% |
| ! | CAATTCTGAGGAATCTATTC+AGG | + | chr6.2:20924540-20924559 | MS.gene061962:CDS | 35.0% |
| ! | GAAGTTTTACACTCATTGAC+AGG | + | chr6.2:20925577-20925596 | MS.gene061962:CDS | 35.0% |
| ! | GACTTAATACTATTGGTTGG+AGG | - | chr6.2:20926037-20926056 | None:intergenic | 35.0% |
| ! | TCATAGTTGATTGGTTGGTA+AGG | - | chr6.2:20924205-20924224 | None:intergenic | 35.0% |
| !! | TCTCTCTTTTAACTGCTTGT+AGG | - | chr6.2:20925529-20925548 | None:intergenic | 35.0% |
| !! | TTTGGTGATGCTGTTATTCA+AGG | + | chr6.2:20924421-20924440 | MS.gene061962:CDS | 35.0% |
| !!! | AAGGTACTGAAGCTACTTTT+GGG | - | chr6.2:20924186-20924205 | None:intergenic | 35.0% |
| !!! | GGTGTGTTTCTAGTAGATTT+TGG | - | chr6.2:20924094-20924113 | None:intergenic | 35.0% |
| !!! | TAAGGATTATTTTAGCGTCG+GGG | + | chr6.2:20924809-20924828 | MS.gene061962:intron | 35.0% |
| !!! | TAAGGTACTGAAGCTACTTT+TGG | - | chr6.2:20924187-20924206 | None:intergenic | 35.0% |
| AGATATGAGTGGTGAGGAAA+TGG | + | chr6.2:20925500-20925519 | MS.gene061962:CDS | 40.0% | |
| AGTCCACAAGATGTATGGAA+AGG | + | chr6.2:20926053-20926072 | MS.gene061962:CDS | 40.0% | |
| CCAGAAGCAACTTATGCAAT+AGG | + | chr6.2:20925306-20925325 | MS.gene061962:CDS | 40.0% | |
| CCTATTGCATAAGTTGCTTC+TGG | - | chr6.2:20925309-20925328 | None:intergenic | 40.0% | |
| CTGTCTCTTGAGGTTACAAA+AGG | + | chr6.2:20925036-20925055 | MS.gene061962:intron | 40.0% | |
| CTTAATACTGCAGTGTCAGA+AGG | + | chr6.2:20924394-20924413 | MS.gene061962:CDS | 40.0% | |
| GATACAATGAGGGACTATTG+TGG | - | chr6.2:20924611-20924630 | None:intergenic | 40.0% | |
| GATTTGAACTCTGTCTCTTG+AGG | + | chr6.2:20925026-20925045 | MS.gene061962:intron | 40.0% | |
| GGCTATTCGTTACACATTCA+GGG | - | chr6.2:20924590-20924609 | None:intergenic | 40.0% | |
| TAGTGAAGATATGAGTGGTG+AGG | + | chr6.2:20925494-20925513 | MS.gene061962:CDS | 40.0% | |
| TGACTACTCCTTACACATTC+AGG | + | chr6.2:20924900-20924919 | MS.gene061962:intron | 40.0% | |
| TGGAAGTTGTATGGCCAAAA+TGG | + | chr6.2:20924276-20924295 | MS.gene061962:CDS | 40.0% | |
| TGGCTATTCGTTACACATTC+AGG | - | chr6.2:20924591-20924610 | None:intergenic | 40.0% | |
| ! | ATGGAACCTGTCATTTGAAG+TGG | - | chr6.2:20925261-20925280 | None:intergenic | 40.0% |
| ! | CTTCTTATAAGGCACCTATG+TGG | + | chr6.2:20924350-20924369 | MS.gene061962:CDS | 40.0% |
| ! | TCTTTGCCACTTCAAATGAC+AGG | + | chr6.2:20925252-20925271 | MS.gene061962:CDS | 40.0% |
| ! | TGTCATTTGAAGTGGCAAAG+AGG | - | chr6.2:20925253-20925272 | None:intergenic | 40.0% |
| ACGAGCGAAGAGAAAGGATT+CGG | + | chr6.2:20925396-20925415 | MS.gene061962:CDS | 45.0% | |
| CCACAAGATGTATGGAAAGG+AGG | + | chr6.2:20926056-20926075 | MS.gene061962:CDS | 45.0% | |
| CCTCCTTTCCATACATCTTG+TGG | - | chr6.2:20926059-20926078 | None:intergenic | 45.0% | |
| CCTTTCTCTTCGCTCGTATT+CGG | - | chr6.2:20925393-20925412 | None:intergenic | 45.0% | |
| CTTTCAATTCCTGATGAGCC+TGG | - | chr6.2:20925972-20925991 | None:intergenic | 45.0% | |
| GAAACATACCTGTTCAGTCC+AGG | + | chr6.2:20925951-20925970 | MS.gene061962:CDS | 45.0% | |
| GACACTGTCTCACACATCTA+GGG | + | chr6.2:20925843-20925862 | MS.gene061962:intron | 45.0% | |
| GCAGTGTCAGAAGGAGAATT+TGG | + | chr6.2:20924403-20924422 | MS.gene061962:CDS | 45.0% | |
| GGTGATGCTGTTATTCAAGG+AGG | + | chr6.2:20924424-20924443 | MS.gene061962:CDS | 45.0% | |
| TAGCCAACCGCCTATTGAAT+CGG | + | chr6.2:20925350-20925369 | MS.gene061962:CDS | 45.0% | |
| TGACACTGTCTCACACATCT+AGG | + | chr6.2:20925842-20925861 | MS.gene061962:intron | 45.0% | |
| ! | ACTTTTCCACCATGCCACAT+AGG | - | chr6.2:20924367-20924386 | None:intergenic | 45.0% |
| ! | CAATCCACTTGGTAGCAACA+TGG | - | chr6.2:20924326-20924345 | None:intergenic | 45.0% |
| ! | TATAAGGCACCTATGTGGCA+TGG | + | chr6.2:20924355-20924374 | MS.gene061962:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTAATCA+GGG | + | chr6.2:20925888-20925907 | MS.gene061962:intron | 5.0% |
| ACTCCGATTCAATAGGCGGT+TGG | - | chr6.2:20925356-20925375 | None:intergenic | 50.0% | |
| CCGAATACGAGCGAAGAGAA+AGG | + | chr6.2:20925390-20925409 | MS.gene061962:CDS | 50.0% | |
| GCTACCATGTTGCTACCAAG+TGG | + | chr6.2:20924319-20924338 | MS.gene061962:CDS | 50.0% | |
| TTCTCTTCGCTCGTATTCGG+AGG | - | chr6.2:20925390-20925409 | None:intergenic | 50.0% | |
| CTGATGAGCCTGGACTGAAC+AGG | - | chr6.2:20925962-20925981 | None:intergenic | 55.0% | |
| CTGTTCAGTCCAGGCTCATC+AGG | + | chr6.2:20925960-20925979 | MS.gene061962:CDS | 55.0% | |
| ! | AAGGCACCTATGTGGCATGG+TGG | + | chr6.2:20924358-20924377 | MS.gene061962:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 20924052 | 20926106 | 20924052 | ID=MS.gene061962 |
| chr6.2 | mRNA | 20924052 | 20926106 | 20924052 | ID=MS.gene061962.t1;Parent=MS.gene061962 |
| chr6.2 | exon | 20924052 | 20924561 | 20924052 | ID=MS.gene061962.t1.exon1;Parent=MS.gene061962.t1 |
| chr6.2 | CDS | 20924052 | 20924561 | 20924052 | ID=cds.MS.gene061962.t1;Parent=MS.gene061962.t1 |
| chr6.2 | exon | 20925147 | 20925599 | 20925147 | ID=MS.gene061962.t1.exon2;Parent=MS.gene061962.t1 |
| chr6.2 | CDS | 20925147 | 20925599 | 20925147 | ID=cds.MS.gene061962.t1;Parent=MS.gene061962.t1 |
| chr6.2 | exon | 20925909 | 20926106 | 20925909 | ID=MS.gene061962.t1.exon3;Parent=MS.gene061962.t1 |
| chr6.2 | CDS | 20925909 | 20926106 | 20925909 | ID=cds.MS.gene061962.t1;Parent=MS.gene061962.t1 |
| Gene Sequence |
| Protein sequence |
