Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064282.t1 | XP_013462106.1 | 79.3 | 685 | 79 | 7 | 11 | 639 | 4 | 681 | 1.40E-248 | 869 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064282.t1 | Q9C9Q4 | 29.6 | 649 | 367 | 18 | 42 | 639 | 30 | 639 | 2.6e-46 | 188.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064282.t1 | A0A072V389 | 79.3 | 685 | 79 | 7 | 11 | 639 | 4 | 681 | 9.8e-249 | 869.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049356 | MS.gene064282 | 0.827169 | 1.81E-54 | -1.69E-46 |
MS.gene049369 | MS.gene064282 | 0.823648 | 1.24E-53 | -1.69E-46 |
MS.gene049396 | MS.gene064282 | 0.845283 | 4.47E-59 | -1.69E-46 |
MS.gene049609 | MS.gene064282 | 0.800185 | 1.62E-48 | -1.69E-46 |
MS.gene049661 | MS.gene064282 | 0.80024 | 1.58E-48 | -1.69E-46 |
MS.gene049805 | MS.gene064282 | 0.838946 | 2.13E-57 | -1.69E-46 |
MS.gene050380 | MS.gene064282 | -0.802024 | 6.83E-49 | -1.69E-46 |
MS.gene050593 | MS.gene064282 | 0.813221 | 2.86E-51 | -1.69E-46 |
MS.gene050670 | MS.gene064282 | 0.819704 | 1.01E-52 | -1.69E-46 |
MS.gene050747 | MS.gene064282 | 0.820616 | 6.24E-53 | -1.69E-46 |
MS.gene050772 | MS.gene064282 | 0.800664 | 1.30E-48 | -1.69E-46 |
MS.gene050950 | MS.gene064282 | 0.814785 | 1.29E-51 | -1.69E-46 |
MS.gene051387 | MS.gene064282 | 0.809569 | 1.77E-50 | -1.69E-46 |
MS.gene051509 | MS.gene064282 | 0.802732 | 4.88E-49 | -1.69E-46 |
MS.gene051692 | MS.gene064282 | 0.805533 | 1.27E-49 | -1.69E-46 |
MS.gene052421 | MS.gene064282 | 0.849374 | 3.37E-60 | -1.69E-46 |
MS.gene052501 | MS.gene064282 | 0.813415 | 2.59E-51 | -1.69E-46 |
MS.gene052505 | MS.gene064282 | 0.822358 | 2.47E-53 | -1.69E-46 |
MS.gene052615 | MS.gene064282 | 0.804534 | 2.06E-49 | -1.69E-46 |
MS.gene052982 | MS.gene064282 | 0.802517 | 5.40E-49 | -1.69E-46 |
MS.gene053213 | MS.gene064282 | 0.809898 | 1.51E-50 | -1.69E-46 |
MS.gene053286 | MS.gene064282 | 0.800811 | 1.21E-48 | -1.69E-46 |
MS.gene053436 | MS.gene064282 | 0.80723 | 5.60E-50 | -1.69E-46 |
MS.gene053449 | MS.gene064282 | 0.802894 | 4.52E-49 | -1.69E-46 |
MS.gene053574 | MS.gene064282 | 0.849215 | 3.73E-60 | -1.69E-46 |
MS.gene053626 | MS.gene064282 | 0.83004 | 3.67E-55 | -1.69E-46 |
MS.gene053813 | MS.gene064282 | 0.817274 | 3.59E-52 | -1.69E-46 |
MS.gene053912 | MS.gene064282 | 0.834121 | 3.60E-56 | -1.69E-46 |
MS.gene054003 | MS.gene064282 | 0.803306 | 3.71E-49 | -1.69E-46 |
MS.gene054408 | MS.gene064282 | 0.80914 | 2.19E-50 | -1.69E-46 |
MS.gene054742 | MS.gene064282 | -0.819179 | 1.33E-52 | -1.69E-46 |
MS.gene05505 | MS.gene064282 | 0.855289 | 6.97E-62 | -1.69E-46 |
MS.gene055116 | MS.gene064282 | 0.813861 | 2.07E-51 | -1.69E-46 |
MS.gene055486 | MS.gene064282 | 0.800452 | 1.43E-48 | -1.69E-46 |
MS.gene055629 | MS.gene064282 | 0.818024 | 2.43E-52 | -1.69E-46 |
MS.gene055722 | MS.gene064282 | 0.806095 | 9.71E-50 | -1.69E-46 |
MS.gene055909 | MS.gene064282 | 0.842127 | 3.13E-58 | -1.69E-46 |
MS.gene055911 | MS.gene064282 | 0.837984 | 3.76E-57 | -1.69E-46 |
MS.gene056166 | MS.gene064282 | 0.821401 | 4.12E-53 | -1.69E-46 |
MS.gene056422 | MS.gene064282 | 0.860313 | 2.25E-63 | -1.69E-46 |
MS.gene056448 | MS.gene064282 | 0.823531 | 1.32E-53 | -1.69E-46 |
MS.gene056511 | MS.gene064282 | 0.863337 | 2.68E-64 | -1.69E-46 |
MS.gene056514 | MS.gene064282 | 0.807285 | 5.45E-50 | -1.69E-46 |
MS.gene056920 | MS.gene064282 | -0.813198 | 2.89E-51 | -1.69E-46 |
MS.gene056942 | MS.gene064282 | 0.80469 | 1.91E-49 | -1.69E-46 |
MS.gene057086 | MS.gene064282 | 0.807162 | 5.78E-50 | -1.69E-46 |
MS.gene057146 | MS.gene064282 | 0.838845 | 2.26E-57 | -1.69E-46 |
MS.gene057416 | MS.gene064282 | 0.810377 | 1.19E-50 | -1.69E-46 |
MS.gene057734 | MS.gene064282 | 0.84759 | 1.05E-59 | -1.69E-46 |
MS.gene057856 | MS.gene064282 | 0.8009 | 1.16E-48 | -1.69E-46 |
MS.gene058075 | MS.gene064282 | 0.829965 | 3.83E-55 | -1.69E-46 |
MS.gene058130 | MS.gene064282 | 0.818092 | 2.35E-52 | -1.69E-46 |
MS.gene058459 | MS.gene064282 | 0.813546 | 2.42E-51 | -1.69E-46 |
MS.gene058928 | MS.gene064282 | 0.81694 | 4.27E-52 | -1.69E-46 |
MS.gene058995 | MS.gene064282 | 0.819843 | 9.39E-53 | -1.69E-46 |
MS.gene059366 | MS.gene064282 | 0.804243 | 2.37E-49 | -1.69E-46 |
MS.gene059367 | MS.gene064282 | 0.814009 | 1.92E-51 | -1.69E-46 |
MS.gene059368 | MS.gene064282 | 0.849958 | 2.32E-60 | -1.69E-46 |
MS.gene059420 | MS.gene064282 | 0.804127 | 2.51E-49 | -1.69E-46 |
MS.gene059517 | MS.gene064282 | 0.82404 | 1.00E-53 | -1.69E-46 |
MS.gene059688 | MS.gene064282 | 0.824502 | 7.79E-54 | -1.69E-46 |
MS.gene059711 | MS.gene064282 | 0.81834 | 2.06E-52 | -1.69E-46 |
MS.gene059807 | MS.gene064282 | 0.835062 | 2.09E-56 | -1.69E-46 |
MS.gene060372 | MS.gene064282 | 0.806841 | 6.76E-50 | -1.69E-46 |
MS.gene060403 | MS.gene064282 | 0.80153 | 8.62E-49 | -1.69E-46 |
MS.gene060482 | MS.gene064282 | 0.812829 | 3.48E-51 | -1.69E-46 |
MS.gene060804 | MS.gene064282 | 0.826604 | 2.48E-54 | -1.69E-46 |
MS.gene060818 | MS.gene064282 | 0.801736 | 7.82E-49 | -1.69E-46 |
MS.gene060835 | MS.gene064282 | 0.802775 | 4.78E-49 | -1.69E-46 |
MS.gene060837 | MS.gene064282 | 0.844092 | 9.36E-59 | -1.69E-46 |
MS.gene06097 | MS.gene064282 | 0.815464 | 9.12E-52 | -1.69E-46 |
MS.gene061041 | MS.gene064282 | 0.827969 | 1.17E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064282.t1 | MTR_3g111700 | 83.942 | 685 | 47 | 7 | 11 | 639 | 4 | 681 | 0.0 | 1124 |
MS.gene064282.t1 | MTR_3g111700 | 83.358 | 685 | 47 | 8 | 11 | 639 | 4 | 677 | 0.0 | 1109 |
MS.gene064282.t1 | MTR_8g494210 | 63.953 | 86 | 31 | 0 | 554 | 639 | 816 | 901 | 3.23e-32 | 133 |
MS.gene064282.t1 | MTR_3g096790 | 55.319 | 94 | 42 | 0 | 546 | 639 | 630 | 723 | 3.15e-30 | 127 |
MS.gene064282.t1 | MTR_3g096790 | 59.302 | 86 | 35 | 0 | 554 | 639 | 575 | 660 | 3.71e-30 | 126 |
MS.gene064282.t1 | MTR_3g088495 | 58.824 | 85 | 35 | 0 | 555 | 639 | 425 | 509 | 4.20e-27 | 116 |
MS.gene064282.t1 | MTR_8g079472 | 59.524 | 84 | 34 | 0 | 556 | 639 | 367 | 450 | 6.13e-27 | 114 |
MS.gene064282.t1 | MTR_1g022415 | 54.651 | 86 | 39 | 0 | 554 | 639 | 1272 | 1357 | 7.68e-27 | 117 |
MS.gene064282.t1 | MTR_2g049770 | 58.333 | 84 | 35 | 0 | 556 | 639 | 359 | 442 | 1.08e-24 | 108 |
MS.gene064282.t1 | MTR_8g077150 | 54.651 | 86 | 39 | 0 | 554 | 639 | 1345 | 1430 | 3.01e-24 | 108 |
MS.gene064282.t1 | MTR_8g077150 | 54.651 | 86 | 39 | 0 | 554 | 639 | 1343 | 1428 | 3.51e-24 | 108 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064282.t1 | AT1G75100 | 31.860 | 656 | 343 | 20 | 42 | 639 | 30 | 639 | 2.09e-63 | 222 |
MS.gene064282.t1 | AT4G12770 | 62.353 | 85 | 32 | 0 | 555 | 639 | 793 | 877 | 4.52e-31 | 130 |
MS.gene064282.t1 | AT4G12770 | 62.353 | 85 | 32 | 0 | 555 | 639 | 795 | 879 | 4.66e-31 | 130 |
MS.gene064282.t1 | AT4G12780 | 61.176 | 85 | 33 | 0 | 555 | 639 | 781 | 865 | 2.50e-30 | 127 |
MS.gene064282.t1 | AT4G12780 | 61.176 | 85 | 33 | 0 | 555 | 639 | 808 | 892 | 2.88e-30 | 127 |
MS.gene064282.t1 | AT4G12780 | 61.176 | 85 | 33 | 0 | 555 | 639 | 798 | 882 | 2.98e-30 | 127 |
MS.gene064282.t1 | AT1G21660 | 54.167 | 96 | 44 | 0 | 544 | 639 | 416 | 511 | 6.63e-30 | 124 |
MS.gene064282.t1 | AT4G36520 | 52.475 | 101 | 45 | 1 | 542 | 639 | 1311 | 1411 | 8.06e-30 | 126 |
MS.gene064282.t1 | AT1G75310 | 51.163 | 86 | 42 | 0 | 554 | 639 | 1352 | 1437 | 1.85e-26 | 116 |
MS.gene064282.t1 | AT1G75310 | 51.163 | 86 | 42 | 0 | 554 | 639 | 1355 | 1440 | 1.87e-26 | 116 |
MS.gene064282.t1 | AT1G30280 | 58.025 | 81 | 33 | 1 | 560 | 639 | 361 | 441 | 6.67e-22 | 99.8 |
MS.gene064282.t1 | AT1G30280 | 58.025 | 81 | 33 | 1 | 560 | 639 | 361 | 441 | 7.74e-22 | 99.4 |
Find 135 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCATTTCTCAATATATAAA+TGG | 0.108600 | 3.4:-96816581 | MS.gene064282:CDS |
GATTTCTTTGATGATATATT+TGG | 0.176321 | 3.4:-96817862 | MS.gene064282:CDS |
CTTTGAATTCTTGAATTTCT+TGG | 0.210654 | 3.4:+96814700 | None:intergenic |
GAAATGGAATTTATCATTAC+TGG | 0.227553 | 3.4:+96816596 | None:intergenic |
ATTCTGCTGTGACAAATTAT+TGG | 0.231869 | 3.4:+96815435 | None:intergenic |
GTTTGCTTCTCTCGACATTC+TGG | 0.237218 | 3.4:+96815948 | None:intergenic |
TCTTCCTTCTTTGGATTCAT+AGG | 0.264090 | 3.4:+96815895 | None:intergenic |
TTATCATTACTGGTATTATT+AGG | 0.276310 | 3.4:+96816606 | None:intergenic |
GCTTTAGCATCATATGTAAT+AGG | 0.281784 | 3.4:+96816194 | None:intergenic |
ATGGGAAAAGGCCGAGTTAA+AGG | 0.292599 | 3.4:-96815789 | MS.gene064282:intron |
AAAGAACCATTGTATGTTAT+AGG | 0.298758 | 3.4:+96816375 | None:intergenic |
GAACAGAGAATGTAATGATT+TGG | 0.304595 | 3.4:+96816091 | None:intergenic |
ACAGGCTTCCAGCCACAATT+TGG | 0.308116 | 3.4:+96814292 | None:intergenic |
GTCCGCTCCATTTGCCAATA+TGG | 0.309597 | 3.4:+96816874 | None:intergenic |
ACTCTTATTAAAGATGTTCT+TGG | 0.312920 | 3.4:-96816221 | MS.gene064282:CDS |
GAGCTTTGGCGGAAATGATA+TGG | 0.318249 | 3.4:+96816270 | None:intergenic |
ATCTCCTTCTTGGACTGTTC+AGG | 0.335287 | 3.4:+96815487 | None:intergenic |
CCCATTTATATATTGAGAAA+TGG | 0.354288 | 3.4:+96816580 | None:intergenic |
GAGGTTCTTTCTGTCCTAAA+AGG | 0.357444 | 3.4:+96816528 | None:intergenic |
GATCAGCCTTCCTGCCATAT+TGG | 0.360624 | 3.4:-96816888 | MS.gene064282:intron |
CGATGAATCTGGTTGAGCTT+TGG | 0.366851 | 3.4:+96816256 | None:intergenic |
GGAGCGGACCTTCAGACATT+TGG | 0.378166 | 3.4:-96816860 | MS.gene064282:CDS |
CGACACAAAATCTCGACTTC+AGG | 0.380047 | 3.4:-96815709 | MS.gene064282:CDS |
GGAGGAGAGGAAGGTGAAAC+GGG | 0.383656 | 3.4:-96817970 | MS.gene064282:CDS |
TACGGTATAGATCTCCTTCT+TGG | 0.394543 | 3.4:+96815477 | None:intergenic |
AACAGAGAATGTAATGATTT+GGG | 0.395410 | 3.4:+96816092 | None:intergenic |
TCCAGATAAGTTGCAGCAAA+AGG | 0.397099 | 3.4:-96814200 | MS.gene064282:CDS |
TGACGGCTGCTCGATGAATC+TGG | 0.398504 | 3.4:+96816245 | None:intergenic |
GCAGCAGCATCACGTCTCTT+TGG | 0.402843 | 3.4:+96817796 | None:intergenic |
CAACGAGATGGTATTCTGTT+AGG | 0.407563 | 3.4:-96818114 | MS.gene064282:CDS |
TACCGTAGAGACCATTGATA+TGG | 0.407659 | 3.4:-96815461 | MS.gene064282:CDS |
TGGAGGAGAGGAAGGTGAAA+CGG | 0.407731 | 3.4:-96817971 | MS.gene064282:CDS |
TTCTCGCTCTCCGGTGGAGG+AGG | 0.408716 | 3.4:+96817934 | None:intergenic |
AGACATTTGGTTCCCCTCCC+AGG | 0.409281 | 3.4:-96816847 | MS.gene064282:CDS |
CCATTTCTCAATATATAAAT+GGG | 0.420049 | 3.4:-96816580 | MS.gene064282:CDS |
GGAGTTAGGAGGAGAAGAAA+AGG | 0.425412 | 3.4:-96817889 | MS.gene064282:CDS |
CATCATGAATAAAGGTACTT+TGG | 0.437239 | 3.4:-96814315 | MS.gene064282:intron |
TTGGTGAGGATAGTGGAGTT+AGG | 0.437366 | 3.4:-96817903 | MS.gene064282:CDS |
GTGAGACGTCATCCTCGTCT+TGG | 0.437976 | 3.4:+96814727 | None:intergenic |
CATCTTTAATAAGAGTTTGA+CGG | 0.438109 | 3.4:+96816228 | None:intergenic |
ACAAGCAGAAAGGAGCTGTA+AGG | 0.440799 | 3.4:-96815677 | MS.gene064282:CDS |
GAAGCAAGTGGTTGAAGAGC+AGG | 0.447957 | 3.4:+96817766 | None:intergenic |
TGAGACGTCATCCTCGTCTT+GGG | 0.454537 | 3.4:+96814728 | None:intergenic |
TACTTTGGCCAAATTGTGGC+TGG | 0.459275 | 3.4:-96814300 | MS.gene064282:CDS |
GAGAGCGAGAAACCCGTGTT+TGG | 0.463425 | 3.4:-96817922 | MS.gene064282:CDS |
GTGTAGTTGGCCTCCTCCAC+CGG | 0.464078 | 3.4:-96817944 | MS.gene064282:CDS |
CAGAATGATATCTCAGCATC+AGG | 0.467976 | 3.4:-96815418 | MS.gene064282:intron |
GATTTCCTCTGTGACGTGCT+CGG | 0.468185 | 3.4:+96818063 | None:intergenic |
TGAATCTGGTTGAGCTTTGG+CGG | 0.468974 | 3.4:+96816259 | None:intergenic |
AAGTAAAGGTGTGGTGCCTT+TGG | 0.470139 | 3.4:-96816556 | MS.gene064282:CDS |
GTGAAACGGGTTGGTGTAGT+TGG | 0.470900 | 3.4:-96817957 | MS.gene064282:CDS |
AACACGGGTTTCTCGCTCTC+CGG | 0.476144 | 3.4:+96817925 | None:intergenic |
CTTTGACCTTCCCTTTAACT+CGG | 0.482481 | 3.4:+96815778 | None:intergenic |
TTTGGTGTTGAACACCCACT+TGG | 0.483247 | 3.4:+96817814 | None:intergenic |
GTCAGTGACAATCCATTCCT+TGG | 0.484645 | 3.4:+96816464 | None:intergenic |
AATAGACTTTGCCTGTAAGT+TGG | 0.486583 | 3.4:+96816715 | None:intergenic |
GGTTTCTCGCTCTCCGGTGG+AGG | 0.486899 | 3.4:+96817931 | None:intergenic |
TTCTTTGATGATATATTTGG+AGG | 0.488721 | 3.4:-96817859 | MS.gene064282:CDS |
AAGATACAACAATGGTCTAA+AGG | 0.488904 | 3.4:-96814577 | MS.gene064282:CDS |
GACACAAAATCTCGACTTCA+GGG | 0.493171 | 3.4:-96815708 | MS.gene064282:CDS |
CCTCTTGTTGATATAATTGA+AGG | 0.494291 | 3.4:-96814268 | MS.gene064282:CDS |
GTCCTTCCATGAGAATTTCA+CGG | 0.498360 | 3.4:-96814854 | MS.gene064282:intron |
TGGGAAAAGGCCGAGTTAAA+GGG | 0.501252 | 3.4:-96815788 | MS.gene064282:intron |
GTGAGGATAGTGGAGTTAGG+AGG | 0.501713 | 3.4:-96817900 | MS.gene064282:CDS |
AGAGGTAGAATGAGAGGCTG+TGG | 0.512253 | 3.4:-96818444 | None:intergenic |
GAGAGGAAGGTGAAACGGGT+TGG | 0.518346 | 3.4:-96817966 | MS.gene064282:CDS |
ATATCAGCAAATGAAATGTC+AGG | 0.519102 | 3.4:+96814892 | None:intergenic |
TCCACTATCCTCACCAAACA+CGG | 0.519983 | 3.4:+96817909 | None:intergenic |
AATGCTCGAGCGCCAAGGAA+TGG | 0.528812 | 3.4:-96816476 | MS.gene064282:CDS |
CTTCCTGCCATATTGGCAAA+TGG | 0.531469 | 3.4:-96816881 | MS.gene064282:CDS |
AAAGGAAAACCTGAAGGATG+GGG | 0.532252 | 3.4:+96817735 | None:intergenic |
CCAGATAAGTTGCAGCAAAA+GGG | 0.532746 | 3.4:-96814199 | MS.gene064282:CDS |
CAAGCAGAAAGGAGCTGTAA+GGG | 0.533958 | 3.4:-96815676 | MS.gene064282:CDS |
TCACTGACGATCCATTCCTT+AGG | 0.534108 | 3.4:+96816420 | None:intergenic |
GGAATACCGTGAAATTCTCA+TGG | 0.535466 | 3.4:+96814848 | None:intergenic |
AAAAGGAAAACCTGAAGGAT+GGG | 0.538970 | 3.4:+96817734 | None:intergenic |
ATATATAAATGGGCAAGTAA+AGG | 0.543545 | 3.4:-96816570 | MS.gene064282:CDS |
CAATGGTCTAAAGGAAAGGA+AGG | 0.544075 | 3.4:-96814568 | MS.gene064282:CDS |
ATTATATCAACAAGAGGCAC+AGG | 0.548095 | 3.4:+96814274 | None:intergenic |
AGCCATATCAATGGTCTCTA+CGG | 0.552400 | 3.4:+96815459 | None:intergenic |
CACTCAAAATGATAGTCCTA+AGG | 0.553900 | 3.4:-96816436 | MS.gene064282:CDS |
GCTCCATTTGCCAATATGGC+AGG | 0.554749 | 3.4:+96816878 | None:intergenic |
AAAATGATAGTCCTAAGGAA+TGG | 0.557461 | 3.4:-96816431 | MS.gene064282:CDS |
TACCGTGAAATTCTCATGGA+AGG | 0.560118 | 3.4:+96814852 | None:intergenic |
GAAAAGGAAAACCTGAAGGA+TGG | 0.560252 | 3.4:+96817733 | None:intergenic |
AGCCAGAGAGGTAGAATGAG+AGG | 0.562797 | 3.4:-96818450 | None:intergenic |
GGTTATAAGTACAAGCAGAA+AGG | 0.564303 | 3.4:-96815687 | MS.gene064282:CDS |
ATTATTGGCAGCCATATCAA+TGG | 0.564382 | 3.4:+96815450 | None:intergenic |
TATTCCTATGAATCCAAAGA+AGG | 0.566231 | 3.4:-96815899 | MS.gene064282:CDS |
ACGGGTTTCTCGCTCTCCGG+TGG | 0.566495 | 3.4:+96817928 | None:intergenic |
CAAAAGACAGATTCTAAGAG+AGG | 0.566877 | 3.4:-96815865 | MS.gene064282:CDS |
GTGGATTCGTACTCCTGGGA+GGG | 0.575566 | 3.4:+96816834 | None:intergenic |
GTCCTAAAAGGCATCGCCAA+AGG | 0.575764 | 3.4:+96816540 | None:intergenic |
ACAACAATGGTCTAAAGGAA+AGG | 0.582355 | 3.4:-96814572 | MS.gene064282:CDS |
GGATATGATGAGGATGAGAG+TGG | 0.582864 | 3.4:-96818093 | MS.gene064282:CDS |
TCGGTGAGTGGAGGAGAGGA+AGG | 0.583090 | 3.4:-96817979 | MS.gene064282:CDS |
CCCGTGTTTGGTGAGGATAG+TGG | 0.588065 | 3.4:-96817910 | MS.gene064282:CDS |
AAGGAAAACCTGAAGGATGG+GGG | 0.591397 | 3.4:+96817736 | None:intergenic |
AATGTCGAGAGAAGCAAACA+TGG | 0.593704 | 3.4:-96815944 | MS.gene064282:CDS |
CCTTCAATTATATCAACAAG+AGG | 0.594887 | 3.4:+96814268 | None:intergenic |
CTCTTGTTGATATAATTGAA+GGG | 0.595299 | 3.4:-96814267 | MS.gene064282:CDS |
CAGGCAAAGTCTATTATCGA+AGG | 0.598865 | 3.4:-96816707 | MS.gene064282:CDS |
ACCACCGCGGAGGAGGTCAT+CGG | 0.601531 | 3.4:-96818010 | MS.gene064282:CDS |
GAGGTCATCGGTAAATTCAT+CGG | 0.602396 | 3.4:-96817998 | MS.gene064282:CDS |
AAGGTACTTTGGCCAAATTG+TGG | 0.605347 | 3.4:-96814304 | MS.gene064282:CDS |
GATAGTCCTATAACATACAA+TGG | 0.611800 | 3.4:-96816381 | MS.gene064282:CDS |
TGAGAAATGCTCGAGCGCCA+AGG | 0.611961 | 3.4:-96816481 | MS.gene064282:CDS |
AAATGATATGGTCTACACTC+TGG | 0.612190 | 3.4:+96816282 | None:intergenic |
TGATCCTGAACAGTCCAAGA+AGG | 0.614384 | 3.4:-96815491 | MS.gene064282:CDS |
TTCATCGGTGAGTGGAGGAG+AGG | 0.616967 | 3.4:-96817983 | MS.gene064282:CDS |
TGGATTCGTACTCCTGGGAG+GGG | 0.619234 | 3.4:+96816835 | None:intergenic |
CGAGAAACCCGTGTTTGGTG+AGG | 0.619296 | 3.4:-96817917 | MS.gene064282:CDS |
AGGAAAACCTGAAGGATGGG+GGG | 0.620328 | 3.4:+96817737 | None:intergenic |
CCACTATCCTCACCAAACAC+GGG | 0.622155 | 3.4:+96817910 | None:intergenic |
TGCCATATTGGCAAATGGAG+CGG | 0.623853 | 3.4:-96816876 | MS.gene064282:CDS |
TCGGTAAATTCATCGGTGAG+TGG | 0.635101 | 3.4:-96817991 | MS.gene064282:CDS |
GAGGGGAACCAAATGTCTGA+AGG | 0.638577 | 3.4:+96816852 | None:intergenic |
AGTTATTCTGAACAACGAGA+TGG | 0.644690 | 3.4:-96818126 | MS.gene064282:CDS |
CATTTGCCAATATGGCAGGA+AGG | 0.645218 | 3.4:+96816882 | None:intergenic |
TAAATGGGCAAGTAAAGGTG+TGG | 0.649679 | 3.4:-96816565 | MS.gene064282:CDS |
TCACAGTCTCAAACTCCAAG+TGG | 0.649969 | 3.4:-96817829 | MS.gene064282:CDS |
ACCGATGACCTCCTCCGCGG+TGG | 0.650721 | 3.4:+96818009 | None:intergenic |
GTAAATTCATCGGTGAGTGG+AGG | 0.651296 | 3.4:-96817988 | MS.gene064282:CDS |
CAGTCTGATGAAGTAGACAA+AGG | 0.651825 | 3.4:-96816669 | MS.gene064282:CDS |
CACAGTCTCAAACTCCAAGT+GGG | 0.653516 | 3.4:-96817828 | MS.gene064282:CDS |
AAAAGGCCGAGTTAAAGGGA+AGG | 0.661454 | 3.4:-96815784 | MS.gene064282:intron |
TTAGGACAGAAAGAACCTCA+AGG | 0.665779 | 3.4:-96816524 | MS.gene064282:CDS |
AGTGGATTCGTACTCCTGGG+AGG | 0.672288 | 3.4:+96816833 | None:intergenic |
TGATATAATTGAAGGGAACG+CGG | 0.688428 | 3.4:-96814260 | MS.gene064282:CDS |
TGAAGTATTATCCCAAGACG+AGG | 0.698525 | 3.4:-96814739 | MS.gene064282:CDS |
TTGACAAGAAGATACAACAA+TGG | 0.703082 | 3.4:-96814585 | MS.gene064282:CDS |
TATAGCAAAGCTACTCCCCG+AGG | 0.719005 | 3.4:-96815835 | MS.gene064282:intron |
TTTACCGATGACCTCCTCCG+CGG | 0.727015 | 3.4:+96818006 | None:intergenic |
ACAAACCGAGCACGTCACAG+AGG | 0.753029 | 3.4:-96818068 | MS.gene064282:CDS |
TATTCTGTTAGGATATGATG+AGG | 0.756116 | 3.4:-96818103 | MS.gene064282:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACTAAAATTAAAACTTTA+GGG | - | chr3.4:96815296-96815315 | MS.gene064282:intron | 10.0% |
!! | TATACTAAAATTAAAACTTT+AGG | - | chr3.4:96815295-96815314 | MS.gene064282:intron | 10.0% |
!! | TACTAAAATTAAAACTTTAG+GGG | - | chr3.4:96815297-96815316 | MS.gene064282:intron | 15.0% |
!! | TATGAATATGTTCTTAATTT+GGG | - | chr3.4:96817256-96817275 | MS.gene064282:intron | 15.0% |
!! | TTATGAATATGTTCTTAATT+TGG | - | chr3.4:96817255-96817274 | MS.gene064282:intron | 15.0% |
!!! | AAAAAAGTATAGCATAAAAT+TGG | + | chr3.4:96814919-96814938 | None:intergenic | 15.0% |
!!! | ACTTTAAAACCATATTTTAA+AGG | - | chr3.4:96815018-96815037 | MS.gene064282:intron | 15.0% |
!!! | ATTTTTTAACATTTCAATTG+TGG | + | chr3.4:96815516-96815535 | None:intergenic | 15.0% |
!!! | CTTTAAAACCATATTTTAAA+GGG | - | chr3.4:96815019-96815038 | MS.gene064282:intron | 15.0% |
!!! | GAACATATTTAATTTAACAA+TGG | + | chr3.4:96817758-96817777 | None:intergenic | 15.0% |
!! | AAAGAGTAATAAAAAACAAG+AGG | - | chr3.4:96816234-96816253 | MS.gene064282:CDS | 20.0% |
!! | AAATTCCTTAATTGAATCTA+TGG | + | chr3.4:96818200-96818219 | None:intergenic | 20.0% |
!! | CCATTTCTCAATATATAAAT+GGG | - | chr3.4:96816002-96816021 | MS.gene064282:intron | 20.0% |
!! | TAAAACCATAGATTCAATTA+AGG | - | chr3.4:96818192-96818211 | MS.gene064282:intron | 20.0% |
!! | TCCATTTCTCAATATATAAA+TGG | - | chr3.4:96816001-96816020 | MS.gene064282:intron | 20.0% |
!! | TTATCATTACTGGTATTATT+AGG | + | chr3.4:96815979-96815998 | None:intergenic | 20.0% |
!!! | AAACTCTGTAGATATATTTT+TGG | - | chr3.4:96817609-96817628 | MS.gene064282:intron | 20.0% |
!!! | AGTACAAAATTGTTCTAAAA+TGG | - | chr3.4:96818240-96818259 | MS.gene064282:intron | 20.0% |
!!! | AGTTTTAACTTTGAAAAAGA+AGG | + | chr3.4:96814890-96814909 | None:intergenic | 20.0% |
!!! | ATGAATATGTTCTTAATTTG+GGG | - | chr3.4:96817257-96817276 | MS.gene064282:intron | 20.0% |
!!! | GATTTCTTTGATGATATATT+TGG | - | chr3.4:96814720-96814739 | MS.gene064282:CDS | 20.0% |
!!! | GTAAAATTAGTTTACATTGA+CGG | - | chr3.4:96815077-96815096 | MS.gene064282:intron | 20.0% |
!!! | TAATTGAATCTATGGTTTTA+CGG | + | chr3.4:96818192-96818211 | None:intergenic | 20.0% |
!!! | TTGATGATTAAATTATGTGA+TGG | - | chr3.4:96817640-96817659 | MS.gene064282:intron | 20.0% |
!!! | TTTTAGAACAATTTTGTACT+TGG | + | chr3.4:96818240-96818259 | None:intergenic | 20.0% |
! | AAAGAACCATTGTATGTTAT+AGG | + | chr3.4:96816210-96816229 | None:intergenic | 25.0% |
! | AACAGAGAATGTAATGATTT+GGG | + | chr3.4:96816493-96816512 | None:intergenic | 25.0% |
! | AAGGTAAAAATTTCAACACT+CGG | + | chr3.4:96817780-96817799 | None:intergenic | 25.0% |
! | AAGTATAGCATAAAATTGGT+TGG | + | chr3.4:96814915-96814934 | None:intergenic | 25.0% |
! | ACTCTTATTAAAGATGTTCT+TGG | - | chr3.4:96816361-96816380 | MS.gene064282:intron | 25.0% |
! | AGATTTATTTCAATTCTCAC+AGG | - | chr3.4:96817061-96817080 | MS.gene064282:intron | 25.0% |
! | ATATATAAATGGGCAAGTAA+AGG | - | chr3.4:96816012-96816031 | MS.gene064282:intron | 25.0% |
! | ATTACTTCTAATTAAGGTCT+TGG | + | chr3.4:96815489-96815508 | None:intergenic | 25.0% |
! | ATTCTCAACTGTATGAATAT+GGG | + | chr3.4:96817211-96817230 | None:intergenic | 25.0% |
! | ATTGCTAAAAGCTAACAAAA+TGG | - | chr3.4:96815390-96815409 | MS.gene064282:intron | 25.0% |
! | CATCTTTAATAAGAGTTTGA+CGG | + | chr3.4:96816357-96816376 | None:intergenic | 25.0% |
! | CCCATTTATATATTGAGAAA+TGG | + | chr3.4:96816005-96816024 | None:intergenic | 25.0% |
! | CGTTTATTACTTACTATTCT+TGG | - | chr3.4:96818104-96818123 | MS.gene064282:CDS | 25.0% |
! | CTCTTGTTGATATAATTGAA+GGG | - | chr3.4:96818315-96818334 | MS.gene064282:intron | 25.0% |
! | CTTTGAATTCTTGAATTTCT+TGG | + | chr3.4:96817885-96817904 | None:intergenic | 25.0% |
! | GAAATGGAATTTATCATTAC+TGG | + | chr3.4:96815989-96816008 | None:intergenic | 25.0% |
! | GATAAAAATGAAACATGTGT+AGG | + | chr3.4:96817922-96817941 | None:intergenic | 25.0% |
! | GGACATATTACTTCTAATTA+AGG | + | chr3.4:96815495-96815514 | None:intergenic | 25.0% |
! | TAAATTCAATCAATGATCAG+TGG | + | chr3.4:96817590-96817609 | None:intergenic | 25.0% |
! | TAGATACTCACATTATTGAA+AGG | - | chr3.4:96816963-96816982 | MS.gene064282:intron | 25.0% |
! | TGATGTTTAAATAGATTCCA+AGG | + | chr3.4:96815459-96815478 | None:intergenic | 25.0% |
! | TGTTACAGTTGTTTAGTTAT+TGG | - | chr3.4:96817033-96817052 | MS.gene064282:intron | 25.0% |
! | TTATCCACATAAACACATAA+AGG | + | chr3.4:96817799-96817818 | None:intergenic | 25.0% |
! | TTTACCTTTATGTGTTTATG+TGG | - | chr3.4:96817792-96817811 | MS.gene064282:CDS | 25.0% |
! | TTTATCCATATTGTATCATG+TGG | - | chr3.4:96814230-96814249 | MS.gene064282:CDS | 25.0% |
! | TTTGAAAAAGAAGGTGAAAA+AGG | + | chr3.4:96814881-96814900 | None:intergenic | 25.0% |
!! | AAATTGTTATTGTTATAGCG+AGG | + | chr3.4:96814405-96814424 | None:intergenic | 25.0% |
!! | ACAGTAAAGAGACATTTTTA+AGG | + | chr3.4:96817402-96817421 | None:intergenic | 25.0% |
!! | ATTAAGGAATTTTAGATCCT+TGG | - | chr3.4:96818208-96818227 | MS.gene064282:intron | 25.0% |
!! | ATTTTACATTCATCGTGTAT+CGG | + | chr3.4:96815126-96815145 | None:intergenic | 25.0% |
!! | CTGAAACAATTTTACACAAA+GGG | - | chr3.4:96817467-96817486 | MS.gene064282:intron | 25.0% |
!! | TAACCCTTTTTACAAATATC+CGG | + | chr3.4:96817562-96817581 | None:intergenic | 25.0% |
!! | TGAATATGTTCTTAATTTGG+GGG | - | chr3.4:96817258-96817277 | MS.gene064282:intron | 25.0% |
!! | TTCTTTGATGATATATTTGG+AGG | - | chr3.4:96814723-96814742 | MS.gene064282:CDS | 25.0% |
!!! | CTTGTTTCTTACTGTTTTTA+CGG | + | chr3.4:96816516-96816535 | None:intergenic | 25.0% |
!!! | GGTTTTAAAGTGAATTTATG+TGG | + | chr3.4:96815009-96815028 | None:intergenic | 25.0% |
!!! | TCTGAAACAATTTTACACAA+AGG | - | chr3.4:96817466-96817485 | MS.gene064282:intron | 25.0% |
AAAATGATAGTCCTAAGGAA+TGG | - | chr3.4:96816151-96816170 | MS.gene064282:intron | 30.0% | |
AAATCTCTCCATTCAAAATC+TGG | + | chr3.4:96814432-96814451 | None:intergenic | 30.0% | |
AACTGTATGAATATGGGATT+TGG | + | chr3.4:96817205-96817224 | None:intergenic | 30.0% | |
AAGATACAACAATGGTCTAA+AGG | - | chr3.4:96818005-96818024 | MS.gene064282:CDS | 30.0% | |
ATATCAGCAAATGAAATGTC+AGG | + | chr3.4:96817693-96817712 | None:intergenic | 30.0% | |
ATTCTGCTGTGACAAATTAT+TGG | + | chr3.4:96817150-96817169 | None:intergenic | 30.0% | |
CAAAACCACATGATACAATA+TGG | + | chr3.4:96814238-96814257 | None:intergenic | 30.0% | |
CAATCTGCAAATTTCAAATC+AGG | + | chr3.4:96817825-96817844 | None:intergenic | 30.0% | |
CATATTCATACAGTTGAGAA+TGG | - | chr3.4:96817210-96817229 | MS.gene064282:intron | 30.0% | |
CATTCTCAACTGTATGAATA+TGG | + | chr3.4:96817212-96817231 | None:intergenic | 30.0% | |
CCTCTTGTTGATATAATTGA+AGG | - | chr3.4:96818314-96818333 | MS.gene064282:intron | 30.0% | |
CCTTCAATTATATCAACAAG+AGG | + | chr3.4:96818317-96818336 | None:intergenic | 30.0% | |
CGTAAAAACAGTAAGAAACA+AGG | - | chr3.4:96816514-96816533 | MS.gene064282:CDS | 30.0% | |
GAACAGAGAATGTAATGATT+TGG | + | chr3.4:96816494-96816513 | None:intergenic | 30.0% | |
GATAGTCCTATAACATACAA+TGG | - | chr3.4:96816201-96816220 | MS.gene064282:CDS | 30.0% | |
GCTTTAGCATCATATGTAAT+AGG | + | chr3.4:96816391-96816410 | None:intergenic | 30.0% | |
TATTCCTATGAATCCAAAGA+AGG | - | chr3.4:96816683-96816702 | MS.gene064282:CDS | 30.0% | |
TATTCTGTTAGGATATGATG+AGG | - | chr3.4:96814479-96814498 | MS.gene064282:intron | 30.0% | |
TTCCACAATCAGTAAAAACA+AGG | - | chr3.4:96816267-96816286 | MS.gene064282:CDS | 30.0% | |
TTGACAAGAAGATACAACAA+TGG | - | chr3.4:96817997-96818016 | MS.gene064282:CDS | 30.0% | |
TTTATTTCAATTCTCACAGG+TGG | - | chr3.4:96817064-96817083 | MS.gene064282:intron | 30.0% | |
! | AATCTTATCTTTTGTCCTTG+AGG | + | chr3.4:96816076-96816095 | None:intergenic | 30.0% |
! | AGAACAATTTTGTACTTGGA+TGG | + | chr3.4:96818236-96818255 | None:intergenic | 30.0% |
! | ATGATTTTAAGCCAACTTAC+AGG | - | chr3.4:96815856-96815875 | MS.gene064282:CDS | 30.0% |
! | CAAAGTACCTTTATTCATGA+TGG | + | chr3.4:96818269-96818288 | None:intergenic | 30.0% |
! | CATGCTTTATTGTTGTTAAC+AGG | + | chr3.4:96818161-96818180 | None:intergenic | 30.0% |
! | CTTATAATAGTGTCTGAGAT+AGG | + | chr3.4:96817496-96817515 | None:intergenic | 30.0% |
! | TATAGGACTATCATTTTGTG+TGG | + | chr3.4:96816193-96816212 | None:intergenic | 30.0% |
! | TATATTTCTGTACACCATGT+AGG | - | chr3.4:96817971-96817990 | MS.gene064282:CDS | 30.0% |
!! | CATCATGAATAAAGGTACTT+TGG | - | chr3.4:96818267-96818286 | MS.gene064282:intron | 30.0% |
!! | CCATATTTTAAAGGGAATGA+TGG | - | chr3.4:96815027-96815046 | MS.gene064282:intron | 30.0% |
!! | CCATCATTCCCTTTAAAATA+TGG | + | chr3.4:96815030-96815049 | None:intergenic | 30.0% |
!! | TTGATTTTAACGACGTGTTT+GGG | - | chr3.4:96814547-96814566 | MS.gene064282:CDS | 30.0% |
!!! | TACCTTGTTTTTACTGATTG+TGG | + | chr3.4:96816272-96816291 | None:intergenic | 30.0% |
AAAAGGAAAACCTGAAGGAT+GGG | + | chr3.4:96814851-96814870 | None:intergenic | 35.0% | |
AAACAAGGTAAAGCTGTCTT+TGG | - | chr3.4:96816529-96816548 | MS.gene064282:CDS | 35.0% | |
AAAGGAAAAGGAAAACCTGA+AGG | + | chr3.4:96814856-96814875 | None:intergenic | 35.0% | |
AAATGATATGGTCTACACTC+TGG | + | chr3.4:96816303-96816322 | None:intergenic | 35.0% | |
AAGAAGGTGAAAAAGGTGAA+AGG | + | chr3.4:96814874-96814893 | None:intergenic | 35.0% | |
AAGCTAACAAAATGGCAATG+TGG | - | chr3.4:96815398-96815417 | MS.gene064282:intron | 35.0% | |
AATAGACTTTGCCTGTAAGT+TGG | + | chr3.4:96815870-96815889 | None:intergenic | 35.0% | |
AATTTGAATACGCTCGAATG+AGG | - | chr3.4:96816994-96817013 | MS.gene064282:intron | 35.0% | |
ACAAATGAGATAGTCTCTGA+TGG | - | chr3.4:96816430-96816449 | MS.gene064282:CDS | 35.0% | |
ACAACAATGGTCTAAAGGAA+AGG | - | chr3.4:96818010-96818029 | MS.gene064282:CDS | 35.0% | |
AGTACGAATCCACTTAACAA+CGG | - | chr3.4:96815758-96815777 | MS.gene064282:CDS | 35.0% | |
AGTTATTCTGAACAACGAGA+TGG | - | chr3.4:96814456-96814475 | MS.gene064282:intron | 35.0% | |
ATACACAAAGTTCCCTAAGA+AGG | + | chr3.4:96815278-96815297 | None:intergenic | 35.0% | |
ATCATATGCACATTGACAGA+AGG | - | chr3.4:96815428-96815447 | MS.gene064282:CDS | 35.0% | |
ATGGCTTCCATCATGAATAA+AGG | - | chr3.4:96818259-96818278 | MS.gene064282:intron | 35.0% | |
ATTATTGGCAGCCATATCAA+TGG | + | chr3.4:96817135-96817154 | None:intergenic | 35.0% | |
CAATGTATGTCTAGCACAAT+TGG | - | chr3.4:96815187-96815206 | MS.gene064282:intron | 35.0% | |
CACTCAAAATGATAGTCCTA+AGG | - | chr3.4:96816146-96816165 | MS.gene064282:intron | 35.0% | |
CTAAGAAGGTGAGAATACAA+GGG | + | chr3.4:96815264-96815283 | None:intergenic | 35.0% | |
CTTGTATTCTCACCTTCTTA+GGG | - | chr3.4:96815263-96815282 | MS.gene064282:intron | 35.0% | |
GCTGATATCCAAGATATAGA+TGG | - | chr3.4:96817424-96817443 | MS.gene064282:intron | 35.0% | |
GGTTATAAGTACAAGCAGAA+AGG | - | chr3.4:96816895-96816914 | MS.gene064282:intron | 35.0% | |
GTGAAAAAGGTGAAAGGAAA+AGG | + | chr3.4:96814868-96814887 | None:intergenic | 35.0% | |
GTGAGAAAGAACAATGATGT+CGG | + | chr3.4:96814348-96814367 | None:intergenic | 35.0% | |
GTTATTGTTATAGCGAGGAA+TGG | + | chr3.4:96814400-96814419 | None:intergenic | 35.0% | |
TATTGACAATTATCACAGCG+TGG | + | chr3.4:96816587-96816606 | None:intergenic | 35.0% | |
TCTAATTAAGGTCTTGGCAT+TGG | + | chr3.4:96815483-96815502 | None:intergenic | 35.0% | |
TCTTCCTTCTTTGGATTCAT+AGG | + | chr3.4:96816690-96816709 | None:intergenic | 35.0% | |
TCTTTCTATCTTTGTGTGTG+AGG | - | chr3.4:96816557-96816576 | MS.gene064282:CDS | 35.0% | |
TGAATTGTCACAGACAAAAG+AGG | + | chr3.4:96814300-96814319 | None:intergenic | 35.0% | |
TGATATAATTGAAGGGAACG+CGG | - | chr3.4:96818322-96818341 | MS.gene064282:intron | 35.0% | |
TGGCCGGATATTTGTAAAAA+GGG | - | chr3.4:96817556-96817575 | MS.gene064282:intron | 35.0% | |
TTCTGTCAATGTGCATATGA+TGG | + | chr3.4:96815429-96815448 | None:intergenic | 35.0% | |
! | ATAATAGTGTCTGAGATAGG+TGG | + | chr3.4:96817493-96817512 | None:intergenic | 35.0% |
! | ATTATATCAACAAGAGGCAC+AGG | + | chr3.4:96818311-96818330 | None:intergenic | 35.0% |
! | ATTGACAGAAGGATTTTCCT+TGG | - | chr3.4:96815439-96815458 | MS.gene064282:CDS | 35.0% |
! | CAAAAGACAGATTCTAAGAG+AGG | - | chr3.4:96816717-96816736 | MS.gene064282:CDS | 35.0% |
! | CTTAGGACTATCATTTTGAG+TGG | + | chr3.4:96816148-96816167 | None:intergenic | 35.0% |
! | CTTTTTCTGCAGTGTACTTT+TGG | + | chr3.4:96818421-96818440 | None:intergenic | 35.0% |
! | TGCTTTTCATCTTCCTTCTT+TGG | + | chr3.4:96816699-96816718 | None:intergenic | 35.0% |
!! | GTTGATTTTAACGACGTGTT+TGG | - | chr3.4:96814546-96814565 | MS.gene064282:CDS | 35.0% |
!! | TGATTTTAACGACGTGTTTG+GGG | - | chr3.4:96814548-96814567 | MS.gene064282:CDS | 35.0% |
AAAGGAAAACCTGAAGGATG+GGG | + | chr3.4:96814850-96814869 | None:intergenic | 40.0% | |
AATGTCGAGAGAAGCAAACA+TGG | - | chr3.4:96816638-96816657 | MS.gene064282:CDS | 40.0% | |
AGCCATATCAATGGTCTCTA+CGG | + | chr3.4:96817126-96817145 | None:intergenic | 40.0% | |
CAACGAGATGGTATTCTGTT+AGG | - | chr3.4:96814468-96814487 | MS.gene064282:intron | 40.0% | |
CAAGAGACTATGATCACATC+AGG | + | chr3.4:96815587-96815606 | None:intergenic | 40.0% | |
CAATGGTCTAAAGGAAAGGA+AGG | - | chr3.4:96818014-96818033 | MS.gene064282:CDS | 40.0% | |
CAGAATGATATCTCAGCATC+AGG | - | chr3.4:96817164-96817183 | MS.gene064282:intron | 40.0% | |
CAGGCAAAGTCTATTATCGA+AGG | - | chr3.4:96815875-96815894 | MS.gene064282:CDS | 40.0% | |
CAGTCTGATGAAGTAGACAA+AGG | - | chr3.4:96815913-96815932 | MS.gene064282:CDS | 40.0% | |
CCACATGGATGTGGTAATTA+AGG | + | chr3.4:96817539-96817558 | None:intergenic | 40.0% | |
CCAGATAAGTTGCAGCAAAA+GGG | - | chr3.4:96818383-96818402 | MS.gene064282:intron | 40.0% | |
CCTAAGAAGGTGAGAATACA+AGG | + | chr3.4:96815265-96815284 | None:intergenic | 40.0% | |
CCTTAATTACCACATCCATG+TGG | - | chr3.4:96817536-96817555 | MS.gene064282:intron | 40.0% | |
CCTTGTATTCTCACCTTCTT+AGG | - | chr3.4:96815262-96815281 | MS.gene064282:intron | 40.0% | |
CGACACTACCATCTATATCT+TGG | + | chr3.4:96817435-96817454 | None:intergenic | 40.0% | |
CTTCTTGTCAATGACCTACA+TGG | + | chr3.4:96817988-96818007 | None:intergenic | 40.0% | |
CTTTGACCTTCCCTTTAACT+CGG | + | chr3.4:96816807-96816826 | None:intergenic | 40.0% | |
GAAAAGGAAAACCTGAAGGA+TGG | + | chr3.4:96814852-96814871 | None:intergenic | 40.0% | |
GACACAAAATCTCGACTTCA+GGG | - | chr3.4:96816874-96816893 | MS.gene064282:CDS | 40.0% | |
GAGGTCATCGGTAAATTCAT+CGG | - | chr3.4:96814584-96814603 | MS.gene064282:CDS | 40.0% | |
GAGGTTCTTTCTGTCCTAAA+AGG | + | chr3.4:96816057-96816076 | None:intergenic | 40.0% | |
GGAATACCGTGAAATTCTCA+TGG | + | chr3.4:96817737-96817756 | None:intergenic | 40.0% | |
GTATGTCTAGCACAATTGGT+CGG | - | chr3.4:96815191-96815210 | MS.gene064282:intron | 40.0% | |
GTCCTTCCATGAGAATTTCA+CGG | - | chr3.4:96817728-96817747 | MS.gene064282:intron | 40.0% | |
GTGGCCGGATATTTGTAAAA+AGG | - | chr3.4:96817555-96817574 | MS.gene064282:intron | 40.0% | |
TAAATGGGCAAGTAAAGGTG+TGG | - | chr3.4:96816017-96816036 | MS.gene064282:intron | 40.0% | |
TACCGTAGAGACCATTGATA+TGG | - | chr3.4:96817121-96817140 | MS.gene064282:intron | 40.0% | |
TACCGTGAAATTCTCATGGA+AGG | + | chr3.4:96817733-96817752 | None:intergenic | 40.0% | |
TACGGTATAGATCTCCTTCT+TGG | + | chr3.4:96817108-96817127 | None:intergenic | 40.0% | |
TCCAGATAAGTTGCAGCAAA+AGG | - | chr3.4:96818382-96818401 | MS.gene064282:intron | 40.0% | |
TCTCTCCATTCAAAATCTGG+CGG | + | chr3.4:96814429-96814448 | None:intergenic | 40.0% | |
TTAGGACAGAAAGAACCTCA+AGG | - | chr3.4:96816058-96816077 | MS.gene064282:intron | 40.0% | |
TTCTTTCTCACAAACCTCTC+TGG | - | chr3.4:96814357-96814376 | MS.gene064282:intron | 40.0% | |
TTGGAAGGAGTAAACATCAG+AGG | + | chr3.4:96815666-96815685 | None:intergenic | 40.0% | |
TTTACAAATATCCGGCCACA+TGG | + | chr3.4:96817554-96817573 | None:intergenic | 40.0% | |
TTTGTACTTGGATGGAACCA+AGG | + | chr3.4:96818228-96818247 | None:intergenic | 40.0% | |
! | AAGGTACTTTGGCCAAATTG+TGG | - | chr3.4:96818278-96818297 | MS.gene064282:intron | 40.0% |
! | ATTTCCCGCCAGATTTTGAA+TGG | - | chr3.4:96814421-96814440 | MS.gene064282:intron | 40.0% |
! | CGAGATTTTGTGTCGAGTTT+GGG | + | chr3.4:96816868-96816887 | None:intergenic | 40.0% |
! | TCGAGATTTTGTGTCGAGTT+TGG | + | chr3.4:96816869-96816888 | None:intergenic | 40.0% |
! | TGAAGTATTATCCCAAGACG+AGG | - | chr3.4:96817843-96817862 | MS.gene064282:CDS | 40.0% |
! | TTAAGTGGATTCGTACTCCT+GGG | + | chr3.4:96815755-96815774 | None:intergenic | 40.0% |
!! | GATTTTAACGACGTGTTTGG+GGG | - | chr3.4:96814549-96814568 | MS.gene064282:CDS | 40.0% |
AAAAGGCCGAGTTAAAGGGA+AGG | - | chr3.4:96816798-96816817 | MS.gene064282:intron | 45.0% | |
AAGGAAAACCTGAAGGATGG+GGG | + | chr3.4:96814849-96814868 | None:intergenic | 45.0% | |
AATTACCACATCCATGTGGC+CGG | - | chr3.4:96817540-96817559 | MS.gene064282:intron | 45.0% | |
ACAAGCAGAAAGGAGCTGTA+AGG | - | chr3.4:96816905-96816924 | MS.gene064282:intron | 45.0% | |
AGAACAGAACAGAACCAGAG+AGG | + | chr3.4:96814374-96814393 | None:intergenic | 45.0% | |
AGACAAAAGAGGACAGGGTT+AGG | + | chr3.4:96814289-96814308 | None:intergenic | 45.0% | |
ATCTCCTTCTTGGACTGTTC+AGG | + | chr3.4:96817098-96817117 | None:intergenic | 45.0% | |
ATGGGAAAAGGCCGAGTTAA+AGG | - | chr3.4:96816793-96816812 | MS.gene064282:intron | 45.0% | |
CAAGCAGAAAGGAGCTGTAA+GGG | - | chr3.4:96816906-96816925 | MS.gene064282:intron | 45.0% | |
CACAGTCTCAAACTCCAAGT+GGG | - | chr3.4:96814754-96814773 | MS.gene064282:intron | 45.0% | |
CATTTGCCAATATGGCAGGA+AGG | + | chr3.4:96815703-96815722 | None:intergenic | 45.0% | |
CGACACAAAATCTCGACTTC+AGG | - | chr3.4:96816873-96816892 | MS.gene064282:CDS | 45.0% | |
CGATGAATCTGGTTGAGCTT+TGG | + | chr3.4:96816329-96816348 | None:intergenic | 45.0% | |
CTCTCCATTCAAAATCTGGC+GGG | + | chr3.4:96814428-96814447 | None:intergenic | 45.0% | |
CTTCCTGCCATATTGGCAAA+TGG | - | chr3.4:96815701-96815720 | MS.gene064282:CDS | 45.0% | |
GAAGGCTGATCAGTCGAATT+TGG | + | chr3.4:96815685-96815704 | None:intergenic | 45.0% | |
GCTGATCAGTCGAATTTGGA+AGG | + | chr3.4:96815681-96815700 | None:intergenic | 45.0% | |
GGAGTTAGGAGGAGAAGAAA+AGG | - | chr3.4:96814693-96814712 | MS.gene064282:intron | 45.0% | |
GGATATGATGAGGATGAGAG+TGG | - | chr3.4:96814489-96814508 | MS.gene064282:intron | 45.0% | |
GTAAATTCATCGGTGAGTGG+AGG | - | chr3.4:96814594-96814613 | MS.gene064282:intron | 45.0% | |
GTCACAGACAAAAGAGGACA+GGG | + | chr3.4:96814294-96814313 | None:intergenic | 45.0% | |
GTCAGTGACAATCCATTCCT+TGG | + | chr3.4:96816121-96816140 | None:intergenic | 45.0% | |
GTTTGCTTCTCTCGACATTC+TGG | + | chr3.4:96816637-96816656 | None:intergenic | 45.0% | |
TACTTTGGCCAAATTGTGGC+TGG | - | chr3.4:96818282-96818301 | MS.gene064282:intron | 45.0% | |
TCACAGTCTCAAACTCCAAG+TGG | - | chr3.4:96814753-96814772 | MS.gene064282:intron | 45.0% | |
TCACTGACGATCCATTCCTT+AGG | + | chr3.4:96816165-96816184 | None:intergenic | 45.0% | |
TCCACTATCCTCACCAAACA+CGG | + | chr3.4:96814676-96814695 | None:intergenic | 45.0% | |
TCGGTAAATTCATCGGTGAG+TGG | - | chr3.4:96814591-96814610 | MS.gene064282:CDS | 45.0% | |
TGATCCTGAACAGTCCAAGA+AGG | - | chr3.4:96817091-96817110 | MS.gene064282:intron | 45.0% | |
TGCCATATTGGCAAATGGAG+CGG | - | chr3.4:96815706-96815725 | MS.gene064282:CDS | 45.0% | |
TGGGAAAAGGCCGAGTTAAA+GGG | - | chr3.4:96816794-96816813 | MS.gene064282:intron | 45.0% | |
TGTCACAGACAAAAGAGGAC+AGG | + | chr3.4:96814295-96814314 | None:intergenic | 45.0% | |
! | AAGTAAAGGTGTGGTGCCTT+TGG | - | chr3.4:96816026-96816045 | MS.gene064282:intron | 45.0% |
! | CCCTTTTGCTGCAACTTATC+TGG | + | chr3.4:96818386-96818405 | None:intergenic | 45.0% |
! | GAGCTTTGGCGGAAATGATA+TGG | + | chr3.4:96816315-96816334 | None:intergenic | 45.0% |
! | GTTAAGTGGATTCGTACTCC+TGG | + | chr3.4:96815756-96815775 | None:intergenic | 45.0% |
! | TGAATCTGGTTGAGCTTTGG+CGG | + | chr3.4:96816326-96816345 | None:intergenic | 45.0% |
! | TTTTCCCATACCTTCTGCCT+GGG | + | chr3.4:96816782-96816801 | None:intergenic | 45.0% |
!! | TTGGTGAGGATAGTGGAGTT+AGG | - | chr3.4:96814679-96814698 | MS.gene064282:intron | 45.0% |
!! | TTTGGTGTTGAACACCCACT+TGG | + | chr3.4:96814771-96814790 | None:intergenic | 45.0% |
AATATCCGGCCACATGGATG+TGG | + | chr3.4:96817548-96817567 | None:intergenic | 50.0% | |
ACAATTGGTCGGTGCGCAAT+GGG | - | chr3.4:96815202-96815221 | MS.gene064282:intron | 50.0% | |
ACAGGCTTCCAGCCACAATT+TGG | + | chr3.4:96818293-96818312 | None:intergenic | 50.0% | |
AGGAAAACCTGAAGGATGGG+GGG | + | chr3.4:96814848-96814867 | None:intergenic | 50.0% | |
CCACTATCCTCACCAAACAC+GGG | + | chr3.4:96814675-96814694 | None:intergenic | 50.0% | |
GAAGCAAGTGGTTGAAGAGC+AGG | + | chr3.4:96814819-96814838 | None:intergenic | 50.0% | |
GAGGGGAACCAAATGTCTGA+AGG | + | chr3.4:96815733-96815752 | None:intergenic | 50.0% | |
GATCAGCCTTCCTGCCATAT+TGG | - | chr3.4:96815694-96815713 | MS.gene064282:CDS | 50.0% | |
GATTTCCTCTGTGACGTGCT+CGG | + | chr3.4:96814522-96814541 | None:intergenic | 50.0% | |
GCAGCAATGCCGTTGTTAAG+TGG | + | chr3.4:96815770-96815789 | None:intergenic | 50.0% | |
GCTCCATTTGCCAATATGGC+AGG | + | chr3.4:96815707-96815726 | None:intergenic | 50.0% | |
GTCCGCTCCATTTGCCAATA+TGG | + | chr3.4:96815711-96815730 | None:intergenic | 50.0% | |
GTTCATTAAGCCCAGGCAGA+AGG | - | chr3.4:96816769-96816788 | MS.gene064282:CDS | 50.0% | |
TATAGCAAAGCTACTCCCCG+AGG | - | chr3.4:96816747-96816766 | MS.gene064282:CDS | 50.0% | |
TGAGACGTCATCCTCGTCTT+GGG | + | chr3.4:96817857-96817876 | None:intergenic | 50.0% | |
TGCCTGGGCTTAATGAACCT+CGG | + | chr3.4:96816767-96816786 | None:intergenic | 50.0% | |
TGGACTAACTTGAGCAGCTG+TGG | - | chr3.4:96817230-96817249 | MS.gene064282:intron | 50.0% | |
TGGAGGAGAGGAAGGTGAAA+CGG | - | chr3.4:96814611-96814630 | MS.gene064282:intron | 50.0% | |
TTAAGCCCAGGCAGAAGGTA+TGG | - | chr3.4:96816774-96816793 | MS.gene064282:CDS | 50.0% | |
! | CAGGCAGAAGGTATGGGAAA+AGG | - | chr3.4:96816781-96816800 | MS.gene064282:CDS | 50.0% |
! | CTTTTCCCATACCTTCTGCC+TGG | + | chr3.4:96816783-96816802 | None:intergenic | 50.0% |
! | TAAGCCCAGGCAGAAGGTAT+GGG | - | chr3.4:96816775-96816794 | MS.gene064282:CDS | 50.0% |
! | TGCCTTTGGCGATGCCTTTT+AGG | - | chr3.4:96816040-96816059 | MS.gene064282:intron | 50.0% |
!! | GTCCTAAAAGGCATCGCCAA+AGG | + | chr3.4:96816045-96816064 | None:intergenic | 50.0% |
!! | GTGAAACGGGTTGGTGTAGT+TGG | - | chr3.4:96814625-96814644 | MS.gene064282:intron | 50.0% |
!! | GTGAGGATAGTGGAGTTAGG+AGG | - | chr3.4:96814682-96814701 | MS.gene064282:intron | 50.0% |
AACACGGGTTTCTCGCTCTC+CGG | + | chr3.4:96814660-96814679 | None:intergenic | 55.0% | |
AATGCTCGAGCGCCAAGGAA+TGG | - | chr3.4:96816106-96816125 | MS.gene064282:CDS | 55.0% | |
ACAAACCGAGCACGTCACAG+AGG | - | chr3.4:96814514-96814533 | MS.gene064282:intron | 55.0% | |
CACAATTGGTCGGTGCGCAA+TGG | - | chr3.4:96815201-96815220 | MS.gene064282:intron | 55.0% | |
CCTGGGCTTAATGAACCTCG+GGG | + | chr3.4:96816765-96816784 | None:intergenic | 55.0% | |
GAGAGCGAGAAACCCGTGTT+TGG | - | chr3.4:96814660-96814679 | MS.gene064282:intron | 55.0% | |
GAGAGGAAGGTGAAACGGGT+TGG | - | chr3.4:96814616-96814635 | MS.gene064282:intron | 55.0% | |
GCAGCAGCATCACGTCTCTT+TGG | + | chr3.4:96814789-96814808 | None:intergenic | 55.0% | |
GCCTGGGCTTAATGAACCTC+GGG | + | chr3.4:96816766-96816785 | None:intergenic | 55.0% | |
GGAGCGGACCTTCAGACATT+TGG | - | chr3.4:96815722-96815741 | MS.gene064282:CDS | 55.0% | |
GGAGGAGAGGAAGGTGAAAC+GGG | - | chr3.4:96814612-96814631 | MS.gene064282:intron | 55.0% | |
GTGAGACGTCATCCTCGTCT+TGG | + | chr3.4:96817858-96817877 | None:intergenic | 55.0% | |
GTGGATTCGTACTCCTGGGA+GGG | + | chr3.4:96815751-96815770 | None:intergenic | 55.0% | |
TGACGGCTGCTCGATGAATC+TGG | + | chr3.4:96816340-96816359 | None:intergenic | 55.0% | |
TGAGAAATGCTCGAGCGCCA+AGG | - | chr3.4:96816101-96816120 | MS.gene064282:CDS | 55.0% | |
TGGATTCGTACTCCTGGGAG+GGG | + | chr3.4:96815750-96815769 | None:intergenic | 55.0% | |
TTCATCGGTGAGTGGAGGAG+AGG | - | chr3.4:96814599-96814618 | MS.gene064282:intron | 55.0% | |
TTTACCGATGACCTCCTCCG+CGG | + | chr3.4:96814579-96814598 | None:intergenic | 55.0% | |
! | AGACATTTGGTTCCCCTCCC+AGG | - | chr3.4:96815735-96815754 | MS.gene064282:CDS | 55.0% |
! | AGTGGATTCGTACTCCTGGG+AGG | + | chr3.4:96815752-96815771 | None:intergenic | 55.0% |
! | CCCGTGTTTGGTGAGGATAG+TGG | - | chr3.4:96814672-96814691 | MS.gene064282:intron | 55.0% |
! | CGAGAAACCCGTGTTTGGTG+AGG | - | chr3.4:96814665-96814684 | MS.gene064282:intron | 55.0% |
CCCCGAGGTTCATTAAGCCC+AGG | - | chr3.4:96816762-96816781 | MS.gene064282:CDS | 60.0% | |
CTTCTCTCCCCCCATCCTTC+AGG | - | chr3.4:96814838-96814857 | MS.gene064282:intron | 60.0% | |
GGGGGGAGAGAAGAAGCAAG+TGG | + | chr3.4:96814831-96814850 | None:intergenic | 60.0% | |
TCGGTGAGTGGAGGAGAGGA+AGG | - | chr3.4:96814603-96814622 | MS.gene064282:intron | 60.0% | |
! | GTGTAGTTGGCCTCCTCCAC+CGG | - | chr3.4:96814638-96814657 | MS.gene064282:intron | 60.0% |
ACCACCGCGGAGGAGGTCAT+CGG | - | chr3.4:96814572-96814591 | MS.gene064282:CDS | 65.0% | |
ACGGGTTTCTCGCTCTCCGG+TGG | + | chr3.4:96814657-96814676 | None:intergenic | 65.0% | |
ACGTGTTTGGGGGACCACCG+CGG | - | chr3.4:96814559-96814578 | MS.gene064282:CDS | 65.0% | |
GGTTTCTCGCTCTCCGGTGG+AGG | + | chr3.4:96814654-96814673 | None:intergenic | 65.0% | |
TTCTCGCTCTCCGGTGGAGG+AGG | + | chr3.4:96814651-96814670 | None:intergenic | 65.0% | |
ACCGATGACCTCCTCCGCGG+TGG | + | chr3.4:96814576-96814595 | None:intergenic | 70.0% | |
TGTTTGGGGGACCACCGCGG+AGG | - | chr3.4:96814562-96814581 | MS.gene064282:CDS | 70.0% | |
TTGGGGGACCACCGCGGAGG+AGG | - | chr3.4:96814565-96814584 | MS.gene064282:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 96814147 | 96818457 | 96814147 | ID=MS.gene064282 |
chr3.4 | mRNA | 96814147 | 96818457 | 96814147 | ID=MS.gene064282.t1;Parent=MS.gene064282 |
chr3.4 | exon | 96818445 | 96818457 | 96818445 | ID=MS.gene064282.t1.exon1;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96818445 | 96818457 | 96818445 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96817745 | 96818171 | 96817745 | ID=MS.gene064282.t1.exon2;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96817745 | 96818171 | 96817745 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96816846 | 96816904 | 96816846 | ID=MS.gene064282.t1.exon3;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96816846 | 96816904 | 96816846 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96816366 | 96816801 | 96816366 | ID=MS.gene064282.t1.exon4;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96816366 | 96816801 | 96816366 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96816186 | 96816325 | 96816186 | ID=MS.gene064282.t1.exon5;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96816186 | 96816325 | 96816186 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96816069 | 96816137 | 96816069 | ID=MS.gene064282.t1.exon6;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96816069 | 96816137 | 96816069 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96815836 | 96815985 | 96815836 | ID=MS.gene064282.t1.exon7;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96815836 | 96815985 | 96815836 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96815665 | 96815801 | 96815665 | ID=MS.gene064282.t1.exon8;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96815665 | 96815801 | 96815665 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96815419 | 96815521 | 96815419 | ID=MS.gene064282.t1.exon9;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96815419 | 96815521 | 96815419 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96814855 | 96814919 | 96814855 | ID=MS.gene064282.t1.exon10;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96814855 | 96814919 | 96814855 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96814701 | 96814763 | 96814701 | ID=MS.gene064282.t1.exon11;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96814701 | 96814763 | 96814701 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96814534 | 96814611 | 96814534 | ID=MS.gene064282.t1.exon12;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96814534 | 96814611 | 96814534 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
chr3.4 | exon | 96814147 | 96814323 | 96814147 | ID=MS.gene064282.t1.exon13;Parent=MS.gene064282.t1 |
chr3.4 | CDS | 96814147 | 96814323 | 96814147 | ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1 |
Gene Sequence |
Protein sequence |