AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064282


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064282.t1 MTR_3g111700 83.942 685 47 7 11 639 4 681 0.0 1124
MS.gene064282.t1 MTR_3g111700 83.358 685 47 8 11 639 4 677 0.0 1109
MS.gene064282.t1 MTR_8g494210 63.953 86 31 0 554 639 816 901 3.23e-32 133
MS.gene064282.t1 MTR_3g096790 55.319 94 42 0 546 639 630 723 3.15e-30 127
MS.gene064282.t1 MTR_3g096790 59.302 86 35 0 554 639 575 660 3.71e-30 126
MS.gene064282.t1 MTR_3g088495 58.824 85 35 0 555 639 425 509 4.20e-27 116
MS.gene064282.t1 MTR_8g079472 59.524 84 34 0 556 639 367 450 6.13e-27 114
MS.gene064282.t1 MTR_1g022415 54.651 86 39 0 554 639 1272 1357 7.68e-27 117
MS.gene064282.t1 MTR_2g049770 58.333 84 35 0 556 639 359 442 1.08e-24 108
MS.gene064282.t1 MTR_8g077150 54.651 86 39 0 554 639 1345 1430 3.01e-24 108
MS.gene064282.t1 MTR_8g077150 54.651 86 39 0 554 639 1343 1428 3.51e-24 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064282.t1 AT1G75100 31.860 656 343 20 42 639 30 639 2.09e-63 222
MS.gene064282.t1 AT4G12770 62.353 85 32 0 555 639 793 877 4.52e-31 130
MS.gene064282.t1 AT4G12770 62.353 85 32 0 555 639 795 879 4.66e-31 130
MS.gene064282.t1 AT4G12780 61.176 85 33 0 555 639 781 865 2.50e-30 127
MS.gene064282.t1 AT4G12780 61.176 85 33 0 555 639 808 892 2.88e-30 127
MS.gene064282.t1 AT4G12780 61.176 85 33 0 555 639 798 882 2.98e-30 127
MS.gene064282.t1 AT1G21660 54.167 96 44 0 544 639 416 511 6.63e-30 124
MS.gene064282.t1 AT4G36520 52.475 101 45 1 542 639 1311 1411 8.06e-30 126
MS.gene064282.t1 AT1G75310 51.163 86 42 0 554 639 1352 1437 1.85e-26 116
MS.gene064282.t1 AT1G75310 51.163 86 42 0 554 639 1355 1440 1.87e-26 116
MS.gene064282.t1 AT1G30280 58.025 81 33 1 560 639 361 441 6.67e-22 99.8
MS.gene064282.t1 AT1G30280 58.025 81 33 1 560 639 361 441 7.74e-22 99.4

Find 135 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTTCTCAATATATAAA+TGG 0.108600 3.4:-96816581 MS.gene064282:CDS
GATTTCTTTGATGATATATT+TGG 0.176321 3.4:-96817862 MS.gene064282:CDS
CTTTGAATTCTTGAATTTCT+TGG 0.210654 3.4:+96814700 None:intergenic
GAAATGGAATTTATCATTAC+TGG 0.227553 3.4:+96816596 None:intergenic
ATTCTGCTGTGACAAATTAT+TGG 0.231869 3.4:+96815435 None:intergenic
GTTTGCTTCTCTCGACATTC+TGG 0.237218 3.4:+96815948 None:intergenic
TCTTCCTTCTTTGGATTCAT+AGG 0.264090 3.4:+96815895 None:intergenic
TTATCATTACTGGTATTATT+AGG 0.276310 3.4:+96816606 None:intergenic
GCTTTAGCATCATATGTAAT+AGG 0.281784 3.4:+96816194 None:intergenic
ATGGGAAAAGGCCGAGTTAA+AGG 0.292599 3.4:-96815789 MS.gene064282:intron
AAAGAACCATTGTATGTTAT+AGG 0.298758 3.4:+96816375 None:intergenic
GAACAGAGAATGTAATGATT+TGG 0.304595 3.4:+96816091 None:intergenic
ACAGGCTTCCAGCCACAATT+TGG 0.308116 3.4:+96814292 None:intergenic
GTCCGCTCCATTTGCCAATA+TGG 0.309597 3.4:+96816874 None:intergenic
ACTCTTATTAAAGATGTTCT+TGG 0.312920 3.4:-96816221 MS.gene064282:CDS
GAGCTTTGGCGGAAATGATA+TGG 0.318249 3.4:+96816270 None:intergenic
ATCTCCTTCTTGGACTGTTC+AGG 0.335287 3.4:+96815487 None:intergenic
CCCATTTATATATTGAGAAA+TGG 0.354288 3.4:+96816580 None:intergenic
GAGGTTCTTTCTGTCCTAAA+AGG 0.357444 3.4:+96816528 None:intergenic
GATCAGCCTTCCTGCCATAT+TGG 0.360624 3.4:-96816888 MS.gene064282:intron
CGATGAATCTGGTTGAGCTT+TGG 0.366851 3.4:+96816256 None:intergenic
GGAGCGGACCTTCAGACATT+TGG 0.378166 3.4:-96816860 MS.gene064282:CDS
CGACACAAAATCTCGACTTC+AGG 0.380047 3.4:-96815709 MS.gene064282:CDS
GGAGGAGAGGAAGGTGAAAC+GGG 0.383656 3.4:-96817970 MS.gene064282:CDS
TACGGTATAGATCTCCTTCT+TGG 0.394543 3.4:+96815477 None:intergenic
AACAGAGAATGTAATGATTT+GGG 0.395410 3.4:+96816092 None:intergenic
TCCAGATAAGTTGCAGCAAA+AGG 0.397099 3.4:-96814200 MS.gene064282:CDS
TGACGGCTGCTCGATGAATC+TGG 0.398504 3.4:+96816245 None:intergenic
GCAGCAGCATCACGTCTCTT+TGG 0.402843 3.4:+96817796 None:intergenic
CAACGAGATGGTATTCTGTT+AGG 0.407563 3.4:-96818114 MS.gene064282:CDS
TACCGTAGAGACCATTGATA+TGG 0.407659 3.4:-96815461 MS.gene064282:CDS
TGGAGGAGAGGAAGGTGAAA+CGG 0.407731 3.4:-96817971 MS.gene064282:CDS
TTCTCGCTCTCCGGTGGAGG+AGG 0.408716 3.4:+96817934 None:intergenic
AGACATTTGGTTCCCCTCCC+AGG 0.409281 3.4:-96816847 MS.gene064282:CDS
CCATTTCTCAATATATAAAT+GGG 0.420049 3.4:-96816580 MS.gene064282:CDS
GGAGTTAGGAGGAGAAGAAA+AGG 0.425412 3.4:-96817889 MS.gene064282:CDS
CATCATGAATAAAGGTACTT+TGG 0.437239 3.4:-96814315 MS.gene064282:intron
TTGGTGAGGATAGTGGAGTT+AGG 0.437366 3.4:-96817903 MS.gene064282:CDS
GTGAGACGTCATCCTCGTCT+TGG 0.437976 3.4:+96814727 None:intergenic
CATCTTTAATAAGAGTTTGA+CGG 0.438109 3.4:+96816228 None:intergenic
ACAAGCAGAAAGGAGCTGTA+AGG 0.440799 3.4:-96815677 MS.gene064282:CDS
GAAGCAAGTGGTTGAAGAGC+AGG 0.447957 3.4:+96817766 None:intergenic
TGAGACGTCATCCTCGTCTT+GGG 0.454537 3.4:+96814728 None:intergenic
TACTTTGGCCAAATTGTGGC+TGG 0.459275 3.4:-96814300 MS.gene064282:CDS
GAGAGCGAGAAACCCGTGTT+TGG 0.463425 3.4:-96817922 MS.gene064282:CDS
GTGTAGTTGGCCTCCTCCAC+CGG 0.464078 3.4:-96817944 MS.gene064282:CDS
CAGAATGATATCTCAGCATC+AGG 0.467976 3.4:-96815418 MS.gene064282:intron
GATTTCCTCTGTGACGTGCT+CGG 0.468185 3.4:+96818063 None:intergenic
TGAATCTGGTTGAGCTTTGG+CGG 0.468974 3.4:+96816259 None:intergenic
AAGTAAAGGTGTGGTGCCTT+TGG 0.470139 3.4:-96816556 MS.gene064282:CDS
GTGAAACGGGTTGGTGTAGT+TGG 0.470900 3.4:-96817957 MS.gene064282:CDS
AACACGGGTTTCTCGCTCTC+CGG 0.476144 3.4:+96817925 None:intergenic
CTTTGACCTTCCCTTTAACT+CGG 0.482481 3.4:+96815778 None:intergenic
TTTGGTGTTGAACACCCACT+TGG 0.483247 3.4:+96817814 None:intergenic
GTCAGTGACAATCCATTCCT+TGG 0.484645 3.4:+96816464 None:intergenic
AATAGACTTTGCCTGTAAGT+TGG 0.486583 3.4:+96816715 None:intergenic
GGTTTCTCGCTCTCCGGTGG+AGG 0.486899 3.4:+96817931 None:intergenic
TTCTTTGATGATATATTTGG+AGG 0.488721 3.4:-96817859 MS.gene064282:CDS
AAGATACAACAATGGTCTAA+AGG 0.488904 3.4:-96814577 MS.gene064282:CDS
GACACAAAATCTCGACTTCA+GGG 0.493171 3.4:-96815708 MS.gene064282:CDS
CCTCTTGTTGATATAATTGA+AGG 0.494291 3.4:-96814268 MS.gene064282:CDS
GTCCTTCCATGAGAATTTCA+CGG 0.498360 3.4:-96814854 MS.gene064282:intron
TGGGAAAAGGCCGAGTTAAA+GGG 0.501252 3.4:-96815788 MS.gene064282:intron
GTGAGGATAGTGGAGTTAGG+AGG 0.501713 3.4:-96817900 MS.gene064282:CDS
AGAGGTAGAATGAGAGGCTG+TGG 0.512253 3.4:-96818444 None:intergenic
GAGAGGAAGGTGAAACGGGT+TGG 0.518346 3.4:-96817966 MS.gene064282:CDS
ATATCAGCAAATGAAATGTC+AGG 0.519102 3.4:+96814892 None:intergenic
TCCACTATCCTCACCAAACA+CGG 0.519983 3.4:+96817909 None:intergenic
AATGCTCGAGCGCCAAGGAA+TGG 0.528812 3.4:-96816476 MS.gene064282:CDS
CTTCCTGCCATATTGGCAAA+TGG 0.531469 3.4:-96816881 MS.gene064282:CDS
AAAGGAAAACCTGAAGGATG+GGG 0.532252 3.4:+96817735 None:intergenic
CCAGATAAGTTGCAGCAAAA+GGG 0.532746 3.4:-96814199 MS.gene064282:CDS
CAAGCAGAAAGGAGCTGTAA+GGG 0.533958 3.4:-96815676 MS.gene064282:CDS
TCACTGACGATCCATTCCTT+AGG 0.534108 3.4:+96816420 None:intergenic
GGAATACCGTGAAATTCTCA+TGG 0.535466 3.4:+96814848 None:intergenic
AAAAGGAAAACCTGAAGGAT+GGG 0.538970 3.4:+96817734 None:intergenic
ATATATAAATGGGCAAGTAA+AGG 0.543545 3.4:-96816570 MS.gene064282:CDS
CAATGGTCTAAAGGAAAGGA+AGG 0.544075 3.4:-96814568 MS.gene064282:CDS
ATTATATCAACAAGAGGCAC+AGG 0.548095 3.4:+96814274 None:intergenic
AGCCATATCAATGGTCTCTA+CGG 0.552400 3.4:+96815459 None:intergenic
CACTCAAAATGATAGTCCTA+AGG 0.553900 3.4:-96816436 MS.gene064282:CDS
GCTCCATTTGCCAATATGGC+AGG 0.554749 3.4:+96816878 None:intergenic
AAAATGATAGTCCTAAGGAA+TGG 0.557461 3.4:-96816431 MS.gene064282:CDS
TACCGTGAAATTCTCATGGA+AGG 0.560118 3.4:+96814852 None:intergenic
GAAAAGGAAAACCTGAAGGA+TGG 0.560252 3.4:+96817733 None:intergenic
AGCCAGAGAGGTAGAATGAG+AGG 0.562797 3.4:-96818450 None:intergenic
GGTTATAAGTACAAGCAGAA+AGG 0.564303 3.4:-96815687 MS.gene064282:CDS
ATTATTGGCAGCCATATCAA+TGG 0.564382 3.4:+96815450 None:intergenic
TATTCCTATGAATCCAAAGA+AGG 0.566231 3.4:-96815899 MS.gene064282:CDS
ACGGGTTTCTCGCTCTCCGG+TGG 0.566495 3.4:+96817928 None:intergenic
CAAAAGACAGATTCTAAGAG+AGG 0.566877 3.4:-96815865 MS.gene064282:CDS
GTGGATTCGTACTCCTGGGA+GGG 0.575566 3.4:+96816834 None:intergenic
GTCCTAAAAGGCATCGCCAA+AGG 0.575764 3.4:+96816540 None:intergenic
ACAACAATGGTCTAAAGGAA+AGG 0.582355 3.4:-96814572 MS.gene064282:CDS
GGATATGATGAGGATGAGAG+TGG 0.582864 3.4:-96818093 MS.gene064282:CDS
TCGGTGAGTGGAGGAGAGGA+AGG 0.583090 3.4:-96817979 MS.gene064282:CDS
CCCGTGTTTGGTGAGGATAG+TGG 0.588065 3.4:-96817910 MS.gene064282:CDS
AAGGAAAACCTGAAGGATGG+GGG 0.591397 3.4:+96817736 None:intergenic
AATGTCGAGAGAAGCAAACA+TGG 0.593704 3.4:-96815944 MS.gene064282:CDS
CCTTCAATTATATCAACAAG+AGG 0.594887 3.4:+96814268 None:intergenic
CTCTTGTTGATATAATTGAA+GGG 0.595299 3.4:-96814267 MS.gene064282:CDS
CAGGCAAAGTCTATTATCGA+AGG 0.598865 3.4:-96816707 MS.gene064282:CDS
ACCACCGCGGAGGAGGTCAT+CGG 0.601531 3.4:-96818010 MS.gene064282:CDS
GAGGTCATCGGTAAATTCAT+CGG 0.602396 3.4:-96817998 MS.gene064282:CDS
AAGGTACTTTGGCCAAATTG+TGG 0.605347 3.4:-96814304 MS.gene064282:CDS
GATAGTCCTATAACATACAA+TGG 0.611800 3.4:-96816381 MS.gene064282:CDS
TGAGAAATGCTCGAGCGCCA+AGG 0.611961 3.4:-96816481 MS.gene064282:CDS
AAATGATATGGTCTACACTC+TGG 0.612190 3.4:+96816282 None:intergenic
TGATCCTGAACAGTCCAAGA+AGG 0.614384 3.4:-96815491 MS.gene064282:CDS
TTCATCGGTGAGTGGAGGAG+AGG 0.616967 3.4:-96817983 MS.gene064282:CDS
TGGATTCGTACTCCTGGGAG+GGG 0.619234 3.4:+96816835 None:intergenic
CGAGAAACCCGTGTTTGGTG+AGG 0.619296 3.4:-96817917 MS.gene064282:CDS
AGGAAAACCTGAAGGATGGG+GGG 0.620328 3.4:+96817737 None:intergenic
CCACTATCCTCACCAAACAC+GGG 0.622155 3.4:+96817910 None:intergenic
TGCCATATTGGCAAATGGAG+CGG 0.623853 3.4:-96816876 MS.gene064282:CDS
TCGGTAAATTCATCGGTGAG+TGG 0.635101 3.4:-96817991 MS.gene064282:CDS
GAGGGGAACCAAATGTCTGA+AGG 0.638577 3.4:+96816852 None:intergenic
AGTTATTCTGAACAACGAGA+TGG 0.644690 3.4:-96818126 MS.gene064282:CDS
CATTTGCCAATATGGCAGGA+AGG 0.645218 3.4:+96816882 None:intergenic
TAAATGGGCAAGTAAAGGTG+TGG 0.649679 3.4:-96816565 MS.gene064282:CDS
TCACAGTCTCAAACTCCAAG+TGG 0.649969 3.4:-96817829 MS.gene064282:CDS
ACCGATGACCTCCTCCGCGG+TGG 0.650721 3.4:+96818009 None:intergenic
GTAAATTCATCGGTGAGTGG+AGG 0.651296 3.4:-96817988 MS.gene064282:CDS
CAGTCTGATGAAGTAGACAA+AGG 0.651825 3.4:-96816669 MS.gene064282:CDS
CACAGTCTCAAACTCCAAGT+GGG 0.653516 3.4:-96817828 MS.gene064282:CDS
AAAAGGCCGAGTTAAAGGGA+AGG 0.661454 3.4:-96815784 MS.gene064282:intron
TTAGGACAGAAAGAACCTCA+AGG 0.665779 3.4:-96816524 MS.gene064282:CDS
AGTGGATTCGTACTCCTGGG+AGG 0.672288 3.4:+96816833 None:intergenic
TGATATAATTGAAGGGAACG+CGG 0.688428 3.4:-96814260 MS.gene064282:CDS
TGAAGTATTATCCCAAGACG+AGG 0.698525 3.4:-96814739 MS.gene064282:CDS
TTGACAAGAAGATACAACAA+TGG 0.703082 3.4:-96814585 MS.gene064282:CDS
TATAGCAAAGCTACTCCCCG+AGG 0.719005 3.4:-96815835 MS.gene064282:intron
TTTACCGATGACCTCCTCCG+CGG 0.727015 3.4:+96818006 None:intergenic
ACAAACCGAGCACGTCACAG+AGG 0.753029 3.4:-96818068 MS.gene064282:CDS
TATTCTGTTAGGATATGATG+AGG 0.756116 3.4:-96818103 MS.gene064282:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAAATTAAAACTTTA+GGG - chr3.4:96815296-96815315 MS.gene064282:intron 10.0%
!! TATACTAAAATTAAAACTTT+AGG - chr3.4:96815295-96815314 MS.gene064282:intron 10.0%
!! TACTAAAATTAAAACTTTAG+GGG - chr3.4:96815297-96815316 MS.gene064282:intron 15.0%
!! TATGAATATGTTCTTAATTT+GGG - chr3.4:96817256-96817275 MS.gene064282:intron 15.0%
!! TTATGAATATGTTCTTAATT+TGG - chr3.4:96817255-96817274 MS.gene064282:intron 15.0%
!!! AAAAAAGTATAGCATAAAAT+TGG + chr3.4:96814919-96814938 None:intergenic 15.0%
!!! ACTTTAAAACCATATTTTAA+AGG - chr3.4:96815018-96815037 MS.gene064282:intron 15.0%
!!! ATTTTTTAACATTTCAATTG+TGG + chr3.4:96815516-96815535 None:intergenic 15.0%
!!! CTTTAAAACCATATTTTAAA+GGG - chr3.4:96815019-96815038 MS.gene064282:intron 15.0%
!!! GAACATATTTAATTTAACAA+TGG + chr3.4:96817758-96817777 None:intergenic 15.0%
!! AAAGAGTAATAAAAAACAAG+AGG - chr3.4:96816234-96816253 MS.gene064282:CDS 20.0%
!! AAATTCCTTAATTGAATCTA+TGG + chr3.4:96818200-96818219 None:intergenic 20.0%
!! CCATTTCTCAATATATAAAT+GGG - chr3.4:96816002-96816021 MS.gene064282:intron 20.0%
!! TAAAACCATAGATTCAATTA+AGG - chr3.4:96818192-96818211 MS.gene064282:intron 20.0%
!! TCCATTTCTCAATATATAAA+TGG - chr3.4:96816001-96816020 MS.gene064282:intron 20.0%
!! TTATCATTACTGGTATTATT+AGG + chr3.4:96815979-96815998 None:intergenic 20.0%
!!! AAACTCTGTAGATATATTTT+TGG - chr3.4:96817609-96817628 MS.gene064282:intron 20.0%
!!! AGTACAAAATTGTTCTAAAA+TGG - chr3.4:96818240-96818259 MS.gene064282:intron 20.0%
!!! AGTTTTAACTTTGAAAAAGA+AGG + chr3.4:96814890-96814909 None:intergenic 20.0%
!!! ATGAATATGTTCTTAATTTG+GGG - chr3.4:96817257-96817276 MS.gene064282:intron 20.0%
!!! GATTTCTTTGATGATATATT+TGG - chr3.4:96814720-96814739 MS.gene064282:CDS 20.0%
!!! GTAAAATTAGTTTACATTGA+CGG - chr3.4:96815077-96815096 MS.gene064282:intron 20.0%
!!! TAATTGAATCTATGGTTTTA+CGG + chr3.4:96818192-96818211 None:intergenic 20.0%
!!! TTGATGATTAAATTATGTGA+TGG - chr3.4:96817640-96817659 MS.gene064282:intron 20.0%
!!! TTTTAGAACAATTTTGTACT+TGG + chr3.4:96818240-96818259 None:intergenic 20.0%
! AAAGAACCATTGTATGTTAT+AGG + chr3.4:96816210-96816229 None:intergenic 25.0%
! AACAGAGAATGTAATGATTT+GGG + chr3.4:96816493-96816512 None:intergenic 25.0%
! AAGGTAAAAATTTCAACACT+CGG + chr3.4:96817780-96817799 None:intergenic 25.0%
! AAGTATAGCATAAAATTGGT+TGG + chr3.4:96814915-96814934 None:intergenic 25.0%
! ACTCTTATTAAAGATGTTCT+TGG - chr3.4:96816361-96816380 MS.gene064282:intron 25.0%
! AGATTTATTTCAATTCTCAC+AGG - chr3.4:96817061-96817080 MS.gene064282:intron 25.0%
! ATATATAAATGGGCAAGTAA+AGG - chr3.4:96816012-96816031 MS.gene064282:intron 25.0%
! ATTACTTCTAATTAAGGTCT+TGG + chr3.4:96815489-96815508 None:intergenic 25.0%
! ATTCTCAACTGTATGAATAT+GGG + chr3.4:96817211-96817230 None:intergenic 25.0%
! ATTGCTAAAAGCTAACAAAA+TGG - chr3.4:96815390-96815409 MS.gene064282:intron 25.0%
! CATCTTTAATAAGAGTTTGA+CGG + chr3.4:96816357-96816376 None:intergenic 25.0%
! CCCATTTATATATTGAGAAA+TGG + chr3.4:96816005-96816024 None:intergenic 25.0%
! CGTTTATTACTTACTATTCT+TGG - chr3.4:96818104-96818123 MS.gene064282:CDS 25.0%
! CTCTTGTTGATATAATTGAA+GGG - chr3.4:96818315-96818334 MS.gene064282:intron 25.0%
! CTTTGAATTCTTGAATTTCT+TGG + chr3.4:96817885-96817904 None:intergenic 25.0%
! GAAATGGAATTTATCATTAC+TGG + chr3.4:96815989-96816008 None:intergenic 25.0%
! GATAAAAATGAAACATGTGT+AGG + chr3.4:96817922-96817941 None:intergenic 25.0%
! GGACATATTACTTCTAATTA+AGG + chr3.4:96815495-96815514 None:intergenic 25.0%
! TAAATTCAATCAATGATCAG+TGG + chr3.4:96817590-96817609 None:intergenic 25.0%
! TAGATACTCACATTATTGAA+AGG - chr3.4:96816963-96816982 MS.gene064282:intron 25.0%
! TGATGTTTAAATAGATTCCA+AGG + chr3.4:96815459-96815478 None:intergenic 25.0%
! TGTTACAGTTGTTTAGTTAT+TGG - chr3.4:96817033-96817052 MS.gene064282:intron 25.0%
! TTATCCACATAAACACATAA+AGG + chr3.4:96817799-96817818 None:intergenic 25.0%
! TTTACCTTTATGTGTTTATG+TGG - chr3.4:96817792-96817811 MS.gene064282:CDS 25.0%
! TTTATCCATATTGTATCATG+TGG - chr3.4:96814230-96814249 MS.gene064282:CDS 25.0%
! TTTGAAAAAGAAGGTGAAAA+AGG + chr3.4:96814881-96814900 None:intergenic 25.0%
!! AAATTGTTATTGTTATAGCG+AGG + chr3.4:96814405-96814424 None:intergenic 25.0%
!! ACAGTAAAGAGACATTTTTA+AGG + chr3.4:96817402-96817421 None:intergenic 25.0%
!! ATTAAGGAATTTTAGATCCT+TGG - chr3.4:96818208-96818227 MS.gene064282:intron 25.0%
!! ATTTTACATTCATCGTGTAT+CGG + chr3.4:96815126-96815145 None:intergenic 25.0%
!! CTGAAACAATTTTACACAAA+GGG - chr3.4:96817467-96817486 MS.gene064282:intron 25.0%
!! TAACCCTTTTTACAAATATC+CGG + chr3.4:96817562-96817581 None:intergenic 25.0%
!! TGAATATGTTCTTAATTTGG+GGG - chr3.4:96817258-96817277 MS.gene064282:intron 25.0%
!! TTCTTTGATGATATATTTGG+AGG - chr3.4:96814723-96814742 MS.gene064282:CDS 25.0%
!!! CTTGTTTCTTACTGTTTTTA+CGG + chr3.4:96816516-96816535 None:intergenic 25.0%
!!! GGTTTTAAAGTGAATTTATG+TGG + chr3.4:96815009-96815028 None:intergenic 25.0%
!!! TCTGAAACAATTTTACACAA+AGG - chr3.4:96817466-96817485 MS.gene064282:intron 25.0%
AAAATGATAGTCCTAAGGAA+TGG - chr3.4:96816151-96816170 MS.gene064282:intron 30.0%
AAATCTCTCCATTCAAAATC+TGG + chr3.4:96814432-96814451 None:intergenic 30.0%
AACTGTATGAATATGGGATT+TGG + chr3.4:96817205-96817224 None:intergenic 30.0%
AAGATACAACAATGGTCTAA+AGG - chr3.4:96818005-96818024 MS.gene064282:CDS 30.0%
ATATCAGCAAATGAAATGTC+AGG + chr3.4:96817693-96817712 None:intergenic 30.0%
ATTCTGCTGTGACAAATTAT+TGG + chr3.4:96817150-96817169 None:intergenic 30.0%
CAAAACCACATGATACAATA+TGG + chr3.4:96814238-96814257 None:intergenic 30.0%
CAATCTGCAAATTTCAAATC+AGG + chr3.4:96817825-96817844 None:intergenic 30.0%
CATATTCATACAGTTGAGAA+TGG - chr3.4:96817210-96817229 MS.gene064282:intron 30.0%
CATTCTCAACTGTATGAATA+TGG + chr3.4:96817212-96817231 None:intergenic 30.0%
CCTCTTGTTGATATAATTGA+AGG - chr3.4:96818314-96818333 MS.gene064282:intron 30.0%
CCTTCAATTATATCAACAAG+AGG + chr3.4:96818317-96818336 None:intergenic 30.0%
CGTAAAAACAGTAAGAAACA+AGG - chr3.4:96816514-96816533 MS.gene064282:CDS 30.0%
GAACAGAGAATGTAATGATT+TGG + chr3.4:96816494-96816513 None:intergenic 30.0%
GATAGTCCTATAACATACAA+TGG - chr3.4:96816201-96816220 MS.gene064282:CDS 30.0%
GCTTTAGCATCATATGTAAT+AGG + chr3.4:96816391-96816410 None:intergenic 30.0%
TATTCCTATGAATCCAAAGA+AGG - chr3.4:96816683-96816702 MS.gene064282:CDS 30.0%
TATTCTGTTAGGATATGATG+AGG - chr3.4:96814479-96814498 MS.gene064282:intron 30.0%
TTCCACAATCAGTAAAAACA+AGG - chr3.4:96816267-96816286 MS.gene064282:CDS 30.0%
TTGACAAGAAGATACAACAA+TGG - chr3.4:96817997-96818016 MS.gene064282:CDS 30.0%
TTTATTTCAATTCTCACAGG+TGG - chr3.4:96817064-96817083 MS.gene064282:intron 30.0%
! AATCTTATCTTTTGTCCTTG+AGG + chr3.4:96816076-96816095 None:intergenic 30.0%
! AGAACAATTTTGTACTTGGA+TGG + chr3.4:96818236-96818255 None:intergenic 30.0%
! ATGATTTTAAGCCAACTTAC+AGG - chr3.4:96815856-96815875 MS.gene064282:CDS 30.0%
! CAAAGTACCTTTATTCATGA+TGG + chr3.4:96818269-96818288 None:intergenic 30.0%
! CATGCTTTATTGTTGTTAAC+AGG + chr3.4:96818161-96818180 None:intergenic 30.0%
! CTTATAATAGTGTCTGAGAT+AGG + chr3.4:96817496-96817515 None:intergenic 30.0%
! TATAGGACTATCATTTTGTG+TGG + chr3.4:96816193-96816212 None:intergenic 30.0%
! TATATTTCTGTACACCATGT+AGG - chr3.4:96817971-96817990 MS.gene064282:CDS 30.0%
!! CATCATGAATAAAGGTACTT+TGG - chr3.4:96818267-96818286 MS.gene064282:intron 30.0%
!! CCATATTTTAAAGGGAATGA+TGG - chr3.4:96815027-96815046 MS.gene064282:intron 30.0%
!! CCATCATTCCCTTTAAAATA+TGG + chr3.4:96815030-96815049 None:intergenic 30.0%
!! TTGATTTTAACGACGTGTTT+GGG - chr3.4:96814547-96814566 MS.gene064282:CDS 30.0%
!!! TACCTTGTTTTTACTGATTG+TGG + chr3.4:96816272-96816291 None:intergenic 30.0%
AAAAGGAAAACCTGAAGGAT+GGG + chr3.4:96814851-96814870 None:intergenic 35.0%
AAACAAGGTAAAGCTGTCTT+TGG - chr3.4:96816529-96816548 MS.gene064282:CDS 35.0%
AAAGGAAAAGGAAAACCTGA+AGG + chr3.4:96814856-96814875 None:intergenic 35.0%
AAATGATATGGTCTACACTC+TGG + chr3.4:96816303-96816322 None:intergenic 35.0%
AAGAAGGTGAAAAAGGTGAA+AGG + chr3.4:96814874-96814893 None:intergenic 35.0%
AAGCTAACAAAATGGCAATG+TGG - chr3.4:96815398-96815417 MS.gene064282:intron 35.0%
AATAGACTTTGCCTGTAAGT+TGG + chr3.4:96815870-96815889 None:intergenic 35.0%
AATTTGAATACGCTCGAATG+AGG - chr3.4:96816994-96817013 MS.gene064282:intron 35.0%
ACAAATGAGATAGTCTCTGA+TGG - chr3.4:96816430-96816449 MS.gene064282:CDS 35.0%
ACAACAATGGTCTAAAGGAA+AGG - chr3.4:96818010-96818029 MS.gene064282:CDS 35.0%
AGTACGAATCCACTTAACAA+CGG - chr3.4:96815758-96815777 MS.gene064282:CDS 35.0%
AGTTATTCTGAACAACGAGA+TGG - chr3.4:96814456-96814475 MS.gene064282:intron 35.0%
ATACACAAAGTTCCCTAAGA+AGG + chr3.4:96815278-96815297 None:intergenic 35.0%
ATCATATGCACATTGACAGA+AGG - chr3.4:96815428-96815447 MS.gene064282:CDS 35.0%
ATGGCTTCCATCATGAATAA+AGG - chr3.4:96818259-96818278 MS.gene064282:intron 35.0%
ATTATTGGCAGCCATATCAA+TGG + chr3.4:96817135-96817154 None:intergenic 35.0%
CAATGTATGTCTAGCACAAT+TGG - chr3.4:96815187-96815206 MS.gene064282:intron 35.0%
CACTCAAAATGATAGTCCTA+AGG - chr3.4:96816146-96816165 MS.gene064282:intron 35.0%
CTAAGAAGGTGAGAATACAA+GGG + chr3.4:96815264-96815283 None:intergenic 35.0%
CTTGTATTCTCACCTTCTTA+GGG - chr3.4:96815263-96815282 MS.gene064282:intron 35.0%
GCTGATATCCAAGATATAGA+TGG - chr3.4:96817424-96817443 MS.gene064282:intron 35.0%
GGTTATAAGTACAAGCAGAA+AGG - chr3.4:96816895-96816914 MS.gene064282:intron 35.0%
GTGAAAAAGGTGAAAGGAAA+AGG + chr3.4:96814868-96814887 None:intergenic 35.0%
GTGAGAAAGAACAATGATGT+CGG + chr3.4:96814348-96814367 None:intergenic 35.0%
GTTATTGTTATAGCGAGGAA+TGG + chr3.4:96814400-96814419 None:intergenic 35.0%
TATTGACAATTATCACAGCG+TGG + chr3.4:96816587-96816606 None:intergenic 35.0%
TCTAATTAAGGTCTTGGCAT+TGG + chr3.4:96815483-96815502 None:intergenic 35.0%
TCTTCCTTCTTTGGATTCAT+AGG + chr3.4:96816690-96816709 None:intergenic 35.0%
TCTTTCTATCTTTGTGTGTG+AGG - chr3.4:96816557-96816576 MS.gene064282:CDS 35.0%
TGAATTGTCACAGACAAAAG+AGG + chr3.4:96814300-96814319 None:intergenic 35.0%
TGATATAATTGAAGGGAACG+CGG - chr3.4:96818322-96818341 MS.gene064282:intron 35.0%
TGGCCGGATATTTGTAAAAA+GGG - chr3.4:96817556-96817575 MS.gene064282:intron 35.0%
TTCTGTCAATGTGCATATGA+TGG + chr3.4:96815429-96815448 None:intergenic 35.0%
! ATAATAGTGTCTGAGATAGG+TGG + chr3.4:96817493-96817512 None:intergenic 35.0%
! ATTATATCAACAAGAGGCAC+AGG + chr3.4:96818311-96818330 None:intergenic 35.0%
! ATTGACAGAAGGATTTTCCT+TGG - chr3.4:96815439-96815458 MS.gene064282:CDS 35.0%
! CAAAAGACAGATTCTAAGAG+AGG - chr3.4:96816717-96816736 MS.gene064282:CDS 35.0%
! CTTAGGACTATCATTTTGAG+TGG + chr3.4:96816148-96816167 None:intergenic 35.0%
! CTTTTTCTGCAGTGTACTTT+TGG + chr3.4:96818421-96818440 None:intergenic 35.0%
! TGCTTTTCATCTTCCTTCTT+TGG + chr3.4:96816699-96816718 None:intergenic 35.0%
!! GTTGATTTTAACGACGTGTT+TGG - chr3.4:96814546-96814565 MS.gene064282:CDS 35.0%
!! TGATTTTAACGACGTGTTTG+GGG - chr3.4:96814548-96814567 MS.gene064282:CDS 35.0%
AAAGGAAAACCTGAAGGATG+GGG + chr3.4:96814850-96814869 None:intergenic 40.0%
AATGTCGAGAGAAGCAAACA+TGG - chr3.4:96816638-96816657 MS.gene064282:CDS 40.0%
AGCCATATCAATGGTCTCTA+CGG + chr3.4:96817126-96817145 None:intergenic 40.0%
CAACGAGATGGTATTCTGTT+AGG - chr3.4:96814468-96814487 MS.gene064282:intron 40.0%
CAAGAGACTATGATCACATC+AGG + chr3.4:96815587-96815606 None:intergenic 40.0%
CAATGGTCTAAAGGAAAGGA+AGG - chr3.4:96818014-96818033 MS.gene064282:CDS 40.0%
CAGAATGATATCTCAGCATC+AGG - chr3.4:96817164-96817183 MS.gene064282:intron 40.0%
CAGGCAAAGTCTATTATCGA+AGG - chr3.4:96815875-96815894 MS.gene064282:CDS 40.0%
CAGTCTGATGAAGTAGACAA+AGG - chr3.4:96815913-96815932 MS.gene064282:CDS 40.0%
CCACATGGATGTGGTAATTA+AGG + chr3.4:96817539-96817558 None:intergenic 40.0%
CCAGATAAGTTGCAGCAAAA+GGG - chr3.4:96818383-96818402 MS.gene064282:intron 40.0%
CCTAAGAAGGTGAGAATACA+AGG + chr3.4:96815265-96815284 None:intergenic 40.0%
CCTTAATTACCACATCCATG+TGG - chr3.4:96817536-96817555 MS.gene064282:intron 40.0%
CCTTGTATTCTCACCTTCTT+AGG - chr3.4:96815262-96815281 MS.gene064282:intron 40.0%
CGACACTACCATCTATATCT+TGG + chr3.4:96817435-96817454 None:intergenic 40.0%
CTTCTTGTCAATGACCTACA+TGG + chr3.4:96817988-96818007 None:intergenic 40.0%
CTTTGACCTTCCCTTTAACT+CGG + chr3.4:96816807-96816826 None:intergenic 40.0%
GAAAAGGAAAACCTGAAGGA+TGG + chr3.4:96814852-96814871 None:intergenic 40.0%
GACACAAAATCTCGACTTCA+GGG - chr3.4:96816874-96816893 MS.gene064282:CDS 40.0%
GAGGTCATCGGTAAATTCAT+CGG - chr3.4:96814584-96814603 MS.gene064282:CDS 40.0%
GAGGTTCTTTCTGTCCTAAA+AGG + chr3.4:96816057-96816076 None:intergenic 40.0%
GGAATACCGTGAAATTCTCA+TGG + chr3.4:96817737-96817756 None:intergenic 40.0%
GTATGTCTAGCACAATTGGT+CGG - chr3.4:96815191-96815210 MS.gene064282:intron 40.0%
GTCCTTCCATGAGAATTTCA+CGG - chr3.4:96817728-96817747 MS.gene064282:intron 40.0%
GTGGCCGGATATTTGTAAAA+AGG - chr3.4:96817555-96817574 MS.gene064282:intron 40.0%
TAAATGGGCAAGTAAAGGTG+TGG - chr3.4:96816017-96816036 MS.gene064282:intron 40.0%
TACCGTAGAGACCATTGATA+TGG - chr3.4:96817121-96817140 MS.gene064282:intron 40.0%
TACCGTGAAATTCTCATGGA+AGG + chr3.4:96817733-96817752 None:intergenic 40.0%
TACGGTATAGATCTCCTTCT+TGG + chr3.4:96817108-96817127 None:intergenic 40.0%
TCCAGATAAGTTGCAGCAAA+AGG - chr3.4:96818382-96818401 MS.gene064282:intron 40.0%
TCTCTCCATTCAAAATCTGG+CGG + chr3.4:96814429-96814448 None:intergenic 40.0%
TTAGGACAGAAAGAACCTCA+AGG - chr3.4:96816058-96816077 MS.gene064282:intron 40.0%
TTCTTTCTCACAAACCTCTC+TGG - chr3.4:96814357-96814376 MS.gene064282:intron 40.0%
TTGGAAGGAGTAAACATCAG+AGG + chr3.4:96815666-96815685 None:intergenic 40.0%
TTTACAAATATCCGGCCACA+TGG + chr3.4:96817554-96817573 None:intergenic 40.0%
TTTGTACTTGGATGGAACCA+AGG + chr3.4:96818228-96818247 None:intergenic 40.0%
! AAGGTACTTTGGCCAAATTG+TGG - chr3.4:96818278-96818297 MS.gene064282:intron 40.0%
! ATTTCCCGCCAGATTTTGAA+TGG - chr3.4:96814421-96814440 MS.gene064282:intron 40.0%
! CGAGATTTTGTGTCGAGTTT+GGG + chr3.4:96816868-96816887 None:intergenic 40.0%
! TCGAGATTTTGTGTCGAGTT+TGG + chr3.4:96816869-96816888 None:intergenic 40.0%
! TGAAGTATTATCCCAAGACG+AGG - chr3.4:96817843-96817862 MS.gene064282:CDS 40.0%
! TTAAGTGGATTCGTACTCCT+GGG + chr3.4:96815755-96815774 None:intergenic 40.0%
!! GATTTTAACGACGTGTTTGG+GGG - chr3.4:96814549-96814568 MS.gene064282:CDS 40.0%
AAAAGGCCGAGTTAAAGGGA+AGG - chr3.4:96816798-96816817 MS.gene064282:intron 45.0%
AAGGAAAACCTGAAGGATGG+GGG + chr3.4:96814849-96814868 None:intergenic 45.0%
AATTACCACATCCATGTGGC+CGG - chr3.4:96817540-96817559 MS.gene064282:intron 45.0%
ACAAGCAGAAAGGAGCTGTA+AGG - chr3.4:96816905-96816924 MS.gene064282:intron 45.0%
AGAACAGAACAGAACCAGAG+AGG + chr3.4:96814374-96814393 None:intergenic 45.0%
AGACAAAAGAGGACAGGGTT+AGG + chr3.4:96814289-96814308 None:intergenic 45.0%
ATCTCCTTCTTGGACTGTTC+AGG + chr3.4:96817098-96817117 None:intergenic 45.0%
ATGGGAAAAGGCCGAGTTAA+AGG - chr3.4:96816793-96816812 MS.gene064282:intron 45.0%
CAAGCAGAAAGGAGCTGTAA+GGG - chr3.4:96816906-96816925 MS.gene064282:intron 45.0%
CACAGTCTCAAACTCCAAGT+GGG - chr3.4:96814754-96814773 MS.gene064282:intron 45.0%
CATTTGCCAATATGGCAGGA+AGG + chr3.4:96815703-96815722 None:intergenic 45.0%
CGACACAAAATCTCGACTTC+AGG - chr3.4:96816873-96816892 MS.gene064282:CDS 45.0%
CGATGAATCTGGTTGAGCTT+TGG + chr3.4:96816329-96816348 None:intergenic 45.0%
CTCTCCATTCAAAATCTGGC+GGG + chr3.4:96814428-96814447 None:intergenic 45.0%
CTTCCTGCCATATTGGCAAA+TGG - chr3.4:96815701-96815720 MS.gene064282:CDS 45.0%
GAAGGCTGATCAGTCGAATT+TGG + chr3.4:96815685-96815704 None:intergenic 45.0%
GCTGATCAGTCGAATTTGGA+AGG + chr3.4:96815681-96815700 None:intergenic 45.0%
GGAGTTAGGAGGAGAAGAAA+AGG - chr3.4:96814693-96814712 MS.gene064282:intron 45.0%
GGATATGATGAGGATGAGAG+TGG - chr3.4:96814489-96814508 MS.gene064282:intron 45.0%
GTAAATTCATCGGTGAGTGG+AGG - chr3.4:96814594-96814613 MS.gene064282:intron 45.0%
GTCACAGACAAAAGAGGACA+GGG + chr3.4:96814294-96814313 None:intergenic 45.0%
GTCAGTGACAATCCATTCCT+TGG + chr3.4:96816121-96816140 None:intergenic 45.0%
GTTTGCTTCTCTCGACATTC+TGG + chr3.4:96816637-96816656 None:intergenic 45.0%
TACTTTGGCCAAATTGTGGC+TGG - chr3.4:96818282-96818301 MS.gene064282:intron 45.0%
TCACAGTCTCAAACTCCAAG+TGG - chr3.4:96814753-96814772 MS.gene064282:intron 45.0%
TCACTGACGATCCATTCCTT+AGG + chr3.4:96816165-96816184 None:intergenic 45.0%
TCCACTATCCTCACCAAACA+CGG + chr3.4:96814676-96814695 None:intergenic 45.0%
TCGGTAAATTCATCGGTGAG+TGG - chr3.4:96814591-96814610 MS.gene064282:CDS 45.0%
TGATCCTGAACAGTCCAAGA+AGG - chr3.4:96817091-96817110 MS.gene064282:intron 45.0%
TGCCATATTGGCAAATGGAG+CGG - chr3.4:96815706-96815725 MS.gene064282:CDS 45.0%
TGGGAAAAGGCCGAGTTAAA+GGG - chr3.4:96816794-96816813 MS.gene064282:intron 45.0%
TGTCACAGACAAAAGAGGAC+AGG + chr3.4:96814295-96814314 None:intergenic 45.0%
! AAGTAAAGGTGTGGTGCCTT+TGG - chr3.4:96816026-96816045 MS.gene064282:intron 45.0%
! CCCTTTTGCTGCAACTTATC+TGG + chr3.4:96818386-96818405 None:intergenic 45.0%
! GAGCTTTGGCGGAAATGATA+TGG + chr3.4:96816315-96816334 None:intergenic 45.0%
! GTTAAGTGGATTCGTACTCC+TGG + chr3.4:96815756-96815775 None:intergenic 45.0%
! TGAATCTGGTTGAGCTTTGG+CGG + chr3.4:96816326-96816345 None:intergenic 45.0%
! TTTTCCCATACCTTCTGCCT+GGG + chr3.4:96816782-96816801 None:intergenic 45.0%
!! TTGGTGAGGATAGTGGAGTT+AGG - chr3.4:96814679-96814698 MS.gene064282:intron 45.0%
!! TTTGGTGTTGAACACCCACT+TGG + chr3.4:96814771-96814790 None:intergenic 45.0%
AATATCCGGCCACATGGATG+TGG + chr3.4:96817548-96817567 None:intergenic 50.0%
ACAATTGGTCGGTGCGCAAT+GGG - chr3.4:96815202-96815221 MS.gene064282:intron 50.0%
ACAGGCTTCCAGCCACAATT+TGG + chr3.4:96818293-96818312 None:intergenic 50.0%
AGGAAAACCTGAAGGATGGG+GGG + chr3.4:96814848-96814867 None:intergenic 50.0%
CCACTATCCTCACCAAACAC+GGG + chr3.4:96814675-96814694 None:intergenic 50.0%
GAAGCAAGTGGTTGAAGAGC+AGG + chr3.4:96814819-96814838 None:intergenic 50.0%
GAGGGGAACCAAATGTCTGA+AGG + chr3.4:96815733-96815752 None:intergenic 50.0%
GATCAGCCTTCCTGCCATAT+TGG - chr3.4:96815694-96815713 MS.gene064282:CDS 50.0%
GATTTCCTCTGTGACGTGCT+CGG + chr3.4:96814522-96814541 None:intergenic 50.0%
GCAGCAATGCCGTTGTTAAG+TGG + chr3.4:96815770-96815789 None:intergenic 50.0%
GCTCCATTTGCCAATATGGC+AGG + chr3.4:96815707-96815726 None:intergenic 50.0%
GTCCGCTCCATTTGCCAATA+TGG + chr3.4:96815711-96815730 None:intergenic 50.0%
GTTCATTAAGCCCAGGCAGA+AGG - chr3.4:96816769-96816788 MS.gene064282:CDS 50.0%
TATAGCAAAGCTACTCCCCG+AGG - chr3.4:96816747-96816766 MS.gene064282:CDS 50.0%
TGAGACGTCATCCTCGTCTT+GGG + chr3.4:96817857-96817876 None:intergenic 50.0%
TGCCTGGGCTTAATGAACCT+CGG + chr3.4:96816767-96816786 None:intergenic 50.0%
TGGACTAACTTGAGCAGCTG+TGG - chr3.4:96817230-96817249 MS.gene064282:intron 50.0%
TGGAGGAGAGGAAGGTGAAA+CGG - chr3.4:96814611-96814630 MS.gene064282:intron 50.0%
TTAAGCCCAGGCAGAAGGTA+TGG - chr3.4:96816774-96816793 MS.gene064282:CDS 50.0%
! CAGGCAGAAGGTATGGGAAA+AGG - chr3.4:96816781-96816800 MS.gene064282:CDS 50.0%
! CTTTTCCCATACCTTCTGCC+TGG + chr3.4:96816783-96816802 None:intergenic 50.0%
! TAAGCCCAGGCAGAAGGTAT+GGG - chr3.4:96816775-96816794 MS.gene064282:CDS 50.0%
! TGCCTTTGGCGATGCCTTTT+AGG - chr3.4:96816040-96816059 MS.gene064282:intron 50.0%
!! GTCCTAAAAGGCATCGCCAA+AGG + chr3.4:96816045-96816064 None:intergenic 50.0%
!! GTGAAACGGGTTGGTGTAGT+TGG - chr3.4:96814625-96814644 MS.gene064282:intron 50.0%
!! GTGAGGATAGTGGAGTTAGG+AGG - chr3.4:96814682-96814701 MS.gene064282:intron 50.0%
AACACGGGTTTCTCGCTCTC+CGG + chr3.4:96814660-96814679 None:intergenic 55.0%
AATGCTCGAGCGCCAAGGAA+TGG - chr3.4:96816106-96816125 MS.gene064282:CDS 55.0%
ACAAACCGAGCACGTCACAG+AGG - chr3.4:96814514-96814533 MS.gene064282:intron 55.0%
CACAATTGGTCGGTGCGCAA+TGG - chr3.4:96815201-96815220 MS.gene064282:intron 55.0%
CCTGGGCTTAATGAACCTCG+GGG + chr3.4:96816765-96816784 None:intergenic 55.0%
GAGAGCGAGAAACCCGTGTT+TGG - chr3.4:96814660-96814679 MS.gene064282:intron 55.0%
GAGAGGAAGGTGAAACGGGT+TGG - chr3.4:96814616-96814635 MS.gene064282:intron 55.0%
GCAGCAGCATCACGTCTCTT+TGG + chr3.4:96814789-96814808 None:intergenic 55.0%
GCCTGGGCTTAATGAACCTC+GGG + chr3.4:96816766-96816785 None:intergenic 55.0%
GGAGCGGACCTTCAGACATT+TGG - chr3.4:96815722-96815741 MS.gene064282:CDS 55.0%
GGAGGAGAGGAAGGTGAAAC+GGG - chr3.4:96814612-96814631 MS.gene064282:intron 55.0%
GTGAGACGTCATCCTCGTCT+TGG + chr3.4:96817858-96817877 None:intergenic 55.0%
GTGGATTCGTACTCCTGGGA+GGG + chr3.4:96815751-96815770 None:intergenic 55.0%
TGACGGCTGCTCGATGAATC+TGG + chr3.4:96816340-96816359 None:intergenic 55.0%
TGAGAAATGCTCGAGCGCCA+AGG - chr3.4:96816101-96816120 MS.gene064282:CDS 55.0%
TGGATTCGTACTCCTGGGAG+GGG + chr3.4:96815750-96815769 None:intergenic 55.0%
TTCATCGGTGAGTGGAGGAG+AGG - chr3.4:96814599-96814618 MS.gene064282:intron 55.0%
TTTACCGATGACCTCCTCCG+CGG + chr3.4:96814579-96814598 None:intergenic 55.0%
! AGACATTTGGTTCCCCTCCC+AGG - chr3.4:96815735-96815754 MS.gene064282:CDS 55.0%
! AGTGGATTCGTACTCCTGGG+AGG + chr3.4:96815752-96815771 None:intergenic 55.0%
! CCCGTGTTTGGTGAGGATAG+TGG - chr3.4:96814672-96814691 MS.gene064282:intron 55.0%
! CGAGAAACCCGTGTTTGGTG+AGG - chr3.4:96814665-96814684 MS.gene064282:intron 55.0%
CCCCGAGGTTCATTAAGCCC+AGG - chr3.4:96816762-96816781 MS.gene064282:CDS 60.0%
CTTCTCTCCCCCCATCCTTC+AGG - chr3.4:96814838-96814857 MS.gene064282:intron 60.0%
GGGGGGAGAGAAGAAGCAAG+TGG + chr3.4:96814831-96814850 None:intergenic 60.0%
TCGGTGAGTGGAGGAGAGGA+AGG - chr3.4:96814603-96814622 MS.gene064282:intron 60.0%
! GTGTAGTTGGCCTCCTCCAC+CGG - chr3.4:96814638-96814657 MS.gene064282:intron 60.0%
ACCACCGCGGAGGAGGTCAT+CGG - chr3.4:96814572-96814591 MS.gene064282:CDS 65.0%
ACGGGTTTCTCGCTCTCCGG+TGG + chr3.4:96814657-96814676 None:intergenic 65.0%
ACGTGTTTGGGGGACCACCG+CGG - chr3.4:96814559-96814578 MS.gene064282:CDS 65.0%
GGTTTCTCGCTCTCCGGTGG+AGG + chr3.4:96814654-96814673 None:intergenic 65.0%
TTCTCGCTCTCCGGTGGAGG+AGG + chr3.4:96814651-96814670 None:intergenic 65.0%
ACCGATGACCTCCTCCGCGG+TGG + chr3.4:96814576-96814595 None:intergenic 70.0%
TGTTTGGGGGACCACCGCGG+AGG - chr3.4:96814562-96814581 MS.gene064282:CDS 70.0%
TTGGGGGACCACCGCGGAGG+AGG - chr3.4:96814565-96814584 MS.gene064282:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 96814147 96818457 96814147 ID=MS.gene064282
chr3.4 mRNA 96814147 96818457 96814147 ID=MS.gene064282.t1;Parent=MS.gene064282
chr3.4 exon 96818445 96818457 96818445 ID=MS.gene064282.t1.exon1;Parent=MS.gene064282.t1
chr3.4 CDS 96818445 96818457 96818445 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96817745 96818171 96817745 ID=MS.gene064282.t1.exon2;Parent=MS.gene064282.t1
chr3.4 CDS 96817745 96818171 96817745 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96816846 96816904 96816846 ID=MS.gene064282.t1.exon3;Parent=MS.gene064282.t1
chr3.4 CDS 96816846 96816904 96816846 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96816366 96816801 96816366 ID=MS.gene064282.t1.exon4;Parent=MS.gene064282.t1
chr3.4 CDS 96816366 96816801 96816366 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96816186 96816325 96816186 ID=MS.gene064282.t1.exon5;Parent=MS.gene064282.t1
chr3.4 CDS 96816186 96816325 96816186 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96816069 96816137 96816069 ID=MS.gene064282.t1.exon6;Parent=MS.gene064282.t1
chr3.4 CDS 96816069 96816137 96816069 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96815836 96815985 96815836 ID=MS.gene064282.t1.exon7;Parent=MS.gene064282.t1
chr3.4 CDS 96815836 96815985 96815836 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96815665 96815801 96815665 ID=MS.gene064282.t1.exon8;Parent=MS.gene064282.t1
chr3.4 CDS 96815665 96815801 96815665 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96815419 96815521 96815419 ID=MS.gene064282.t1.exon9;Parent=MS.gene064282.t1
chr3.4 CDS 96815419 96815521 96815419 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96814855 96814919 96814855 ID=MS.gene064282.t1.exon10;Parent=MS.gene064282.t1
chr3.4 CDS 96814855 96814919 96814855 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96814701 96814763 96814701 ID=MS.gene064282.t1.exon11;Parent=MS.gene064282.t1
chr3.4 CDS 96814701 96814763 96814701 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96814534 96814611 96814534 ID=MS.gene064282.t1.exon12;Parent=MS.gene064282.t1
chr3.4 CDS 96814534 96814611 96814534 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
chr3.4 exon 96814147 96814323 96814147 ID=MS.gene064282.t1.exon13;Parent=MS.gene064282.t1
chr3.4 CDS 96814147 96814323 96814147 ID=cds.MS.gene064282.t1;Parent=MS.gene064282.t1
Gene Sequence

>MS.gene064282

ATGAGAGGCTGTGGTGTGTTCATTTTGATTTCAGTTACAATCTGTAGACATTTGATTTATTTAGTATCACAAATTATTCACACTTTATCCATATTGTATCATGTGGTTTTGCAATTTCTACTAGATTTCAGTGCTACTACCTAACCCTGTCCTCTTTTGTCTGTGACAATTCAAATTATTATTTCAAAATTCTCTTCACCGACATCATTGTTCTTTCTCACAAACCTCTCTGGTTCTGTTCTGTTCTGTTCCATTCCTCGCTATAACAATAACAATTTCCCGCCAGATTTTGAATGGAGAGATTTTAATAGTTATTCTGAACAACGAGATGGTATTCTGTTAGGATATGATGAGGATGAGAGTGGTAACAAACCGAGCACGTCACAGAGGAAATCAGACGTTGATTTTAACGACGTGTTTGGGGGACCACCGCGGAGGAGGTCATCGGTAAATTCATCGGTGAGTGGAGGAGAGGAAGGTGAAACGGGTTGGTGTAGTTGGCCTCCTCCACCGGAGAGCGAGAAACCCGTGTTTGGTGAGGATAGTGGAGTTAGGAGGAGAAGAAAAGGAAAAGATTTCTTTGATGATATATTTGGAGGAGAAGAGTCACAGTCTCAAACTCCAAGTGGGTGTTCAACACCAAAGAGACGTGATGCTGCTGCTTTCAGTCCTGCTCTTCAACCACTTGCTTCTTCTCTCCCCCCATCCTTCAGGTTTTCCTTTTCCTTTCACCTTTTTCACCTTCTTTTTCAAAGTTAAAACTAACCAACCAATTTTATGCTATACTTTTTTTATTTTTTTTTTTTTATTTTTAAATATTTACTGTCAAAAATTAATTTAAAGATAATTCATCATTTCGCCACATAAATTCACTTTAAAACCATATTTTAAAGGGAATGATGGTGTATTTTATTCTCGTTCGATGTCAGTGTAAAATTAGTTTACATTGACGGTACTGTCTAATTTATTTTCTCTTCCGATACACGATGAATGTAAAATATGTAGTTACTTTTAAAGTAACTTACACAAAAATCTATAAACAATGTATGTCTAGCACAATTGGTCGGTGCGCAATGGGTGAACTTTGTAATCTCACTTTTTAAAACTAAAAAAACCCTTGTATTCTCACCTTCTTAGGGAACTTTGTGTATACTAAAATTAAAACTTTAGGGGATGATTTGCTAAAAATCTAAAGTAGTATCTAGTTACATGTAGTTTTTGTATTTTTTAAAGCTAAAATTGAATTGCTAAAAGCTAACAAAATGGCAATGTGGTGCATCCATCATATGCACATTGACAGAAGGATTTTCCTTGGAATCTATTTAAACATCATCCAATGCCAAGACCTTAATTAGAAGTAATATGTCCACAATTGAAATGTTAAAAAATAATAGTCAATTGAGTTGATATTTGTGATAACATACTTGTTACTCACTGCCTGATGTGATCATAGTCTCTTGTTTTTGCTACTTCTAATTTCAAAGCAATGCAATAATGATCTGTTCATCTTCACTTGCCTCTGATGTTTACTCCTTCCAAATTCGACTGATCAGCCTTCCTGCCATATTGGCAAATGGAGCGGACCTTCAGACATTTGGTTCCCCTCCCAGGAGTACGAATCCACTTAACAACGGCATTGCTGCTTCAAATGATTAGACTTCTCAGACTCTCATCTATCTAGATTTTCAGCTCAACATAAAGAATTGCAAATGATTTTAAGCCAACTTACAGGCAAAGTCTATTATCGAAGGAGTTTTCAACTTGAGCAGTCTGATGAAGTAGACAAAGGAAACAATTTGAAACAAGACAGATCTATTACTGAAGTTTCTCCTAATAATACCAGTAATGATAAATTCCATTTCTCAATATATAAATGGGCAAGTAAAGGTGTGGTGCCTTTGGCGATGCCTTTTAGGACAGAAAGAACCTCAAGGACAAAAGATAAGATTAAACTTGAGAAATGCTCGAGCGCCAAGGAATGGATTGTCACTGACATTACCACTCAAAATGATAGTCCTAAGGAATGGATCGTCAGTGAGATTACCACACAAAATGATAGTCCTATAACATACAATGGTTCTTTCTTTAAAGAGTAATAAAAAACAAGAGGTGTCAAATACTTCCACAATCAGTAAAAACAAGGTAGATTCACACCAGAGTGTAGACCATATCATTTCCGCCAAAGCTCAACCAGATTCATCGAGCAGCCGTCAAACTCTTATTAAAGATGTTCTTGGTAGTCCTATTACATATGATGCTAAAGCAGAATCAAGTACTCATTCTACAAATGAGATAGTCTCTGATGGAAAAACTGAAGCAGCAAGTGAAACTCACAAACATGAGCCCAAATCATTACATTCTCTGTTCCGTAAAAACAGTAAGAAACAAGGTAAAGCTGTCTTTGGCATTCTCTTTCTATCTTTGTGTGTGAGGTTTACCACGCTGTGATAATTGTCAATAGTTTTATGTCAGATTATGATAAGATAACCAGAATGTCGAGAGAAGCAAACATGGCGAAAAGCTCAAATAGTTTTGATATTCCTATGAATCCAAAGAAGGAAGATGAAAAGCAAAAGACAGATTCTAAGAGAGGTGTAGAATATAGCAAAGCTACTCCCCGAGGTTCATTAAGCCCAGGCAGAAGGTATGGGAAAAGGCCGAGTTAAAGGGAAGGTCAAAGAATTTGCTCAAATATTCAATCAAGAAGCTGTAACAAAACCCAAACTCGACACAAAATCTCGACTTCAGGGTTATAAGTACAAGCAGAAAGGAGCTGTAAGGGTAAATAACGATGTAAGTGCTGTCGCAGCTGAAGTTAGATACTCACATTATTGAAAGGATGTCGATAATTTGAATACGCTCGAATGAGGAATCTCATGTTATTCTTGTTACAGTTGTTTAGTTATTGGATTTAAGATTTATTTCAATTCTCACAGGTGGATGATGATCCTGAACAGTCCAAGAAGGAGATCTATACCGTAGAGACCATTGATATGGCTGCCAATAATTTGTCACAGCAGAATGATATCTCAGCATCAGGTACTTGCTTAATTATCCAAATCCCATATTCATACAGTTGAGAATGGACTAACTTGAGCAGCTGTGGAATTATGAATATGTTCTTAATTTGGGGGATGTTTACAACAGTATGACAAACTTACAAAGATTACATATGTGAACTGCATTAGTATTTTATTTAAAATTCTTCTGCTATTAGCATAATATGTTTCTCTTGTTATCTTTTAAATCAGTCCTTAAAAATGTCTCTTTACTGTACGCTGATATCCAAGATATAGATGGTAGTGTCGATACACTGCTTTCTGAAACAATTTTACACAAAGGGCCACCTATCTCAGACACTATTATAAGCTATTCTTTGCAAGTAGAAACCTTAATTACCACATCCATGTGGCCGGATATTTGTAAAAAGGGTTACACTTCCACTGATCATTGATTGAATTTAAACTCTGTAGATATATTTTTGGCTGAATACTTGATGATTAAATTATGTGATGGAACAACTTGATTATGTTAGCAGCAATTCCTGACATTTCATTTGCTGATATTGAAGATAAAGACGAGTCCTTCCATGAGAATTTCACGGTATTCCATTGTTAAATTAAATATGTTCCGAGTGTTGAAATTTTTACCTTTATGTGTTTATGTGGATAAGCTCCTGATTTGAAATTTGCAGATTGAAGTATTATCCCAAGACGAGGATGACGTCTCACAGAACCAAGAAATTCAAGAATTCAAAGTAATTTGCAACTTACCTACACATGTTTCATTTTTATCAACTTGTAGAAGAATAACGATATTAAGCATATATTTCTGTACACCATGTAGGTCATTGACAAGAAGATACAACAATGGTCTAAAGGAAAGGAAGGAAACATACGCTCACTGCTGTCAACATTACAATACGTGAGAAAATATATATATGTACATATATATGTTCGTTTATTACTTACTATTCTTGGCCCATTTGATTGAAAATTCCATATTTTCTTGCCTGTTAACAACAATAAAGCATGTTGATATGCCGTAAAACCATAGATTCAATTAAGGAATTTTAGATCCTTGGTTCCATCCAAGTACAAAATTGTTCTAAAATGGCTTCCATCATGAATAAAGGTACTTTGGCCAAATTGTGGCTGGAAGCCTGTGCCTCTTGTTGATATAATTGAAGGGAACGCGGTTAAAAGATCTTATCAAAGAGCTTTACTCAGTCTGCATCCAGATAAGTTGCAGCAAAAGGGTGCTACTTCAGACCAAAAGTACACTGCAGAAAAAGTTTTTGATATTTTACAG

Protein sequence

>MS.gene064282.t1

MRGCDFEWRDFNSYSEQRDGILLGYDEDESGNKPSTSQRKSDVDFNDVFGGPPRRRSSVNSSVSGGEEGETGWCSWPPPPESEKPVFGEDSGVRRRRKGKDFFDDIFGGEESQSQTPSGCSTPKRRDAAAFSPALQPLASSLPPSFSLPAILANGADLQTFGSPPRNFSDSHLSRFSAQHKELQMILSQLTGKVYYRRSFQLEQSDEVDKGNNLKQDRSITEVSPNNTSNDKFHFSIYKWASKGVVPLAMPFRTERTSRTKDKIKLEKCSSAKEWIVTDITTQNDSPKEWIVSEITTQNDSPITYNGSFFKDKNKVDSHQSVDHIISAKAQPDSSSSRQTLIKDVLGSPITYDAKAESTSETHKHEPKSLHSLFRKNSKKQDYDKITRMSREANMAKSSNSFDIPMNPKKEDEKQKTDSKRGVEYSKATPRGRVKGKVKEFAQIFNQEAVTKPKLDTKSRLQGYKYKQKGAVRVNNDVDDDPEQSKKEIYTVETIDMAANNLSQQNDISASAIPDISFADIEDKDESFHENFTIEVLSQDEDDVSQNQEIQEFKVIDKKIQQWSKGKEGNIRSLLSTLQYVLWPNCGWKPVPLVDIIEGNAVKRSYQRALLSLHPDKLQQKGATSDQKYTAEKVFDILQ