Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070210.t1 | XP_013469962.1 | 96.3 | 82 | 3 | 0 | 1 | 82 | 785 | 866 | 6.00E-34 | 154.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070210.t1 | B6EUA9 | 52.5 | 80 | 38 | 0 | 1 | 80 | 726 | 805 | 5.7e-17 | 89.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070210.t1 | A0A072W136 | 96.3 | 82 | 3 | 0 | 1 | 82 | 785 | 866 | 4.3e-34 | 154.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene070210 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene070210 | 0.815737 | 7.93E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene070210 | 0.820457 | 6.79E-53 | -1.69E-46 |
| MS.gene049452 | MS.gene070210 | 0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene070210 | 0.829701 | 4.44E-55 | -1.69E-46 |
| MS.gene049873 | MS.gene070210 | 0.849653 | 2.82E-60 | -1.69E-46 |
| MS.gene050026 | MS.gene070210 | 0.809545 | 1.79E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene070210 | 0.801425 | 9.06E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene070210 | 0.829774 | 4.26E-55 | -1.69E-46 |
| MS.gene050750 | MS.gene070210 | 0.801177 | 1.02E-48 | -1.69E-46 |
| MS.gene050799 | MS.gene070210 | 0.840454 | 8.61E-58 | -1.69E-46 |
| MS.gene050905 | MS.gene070210 | -0.829927 | 3.91E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene070210 | 0.802916 | 4.47E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene070210 | -0.818448 | 1.95E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene070210 | 0.894406 | 2.54E-75 | -1.69E-46 |
| MS.gene052582 | MS.gene070210 | 0.812081 | 5.07E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene070210 | 0.830992 | 2.15E-55 | -1.69E-46 |
| MS.gene052685 | MS.gene070210 | 0.802009 | 6.87E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene070210 | 0.804917 | 1.72E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene070210 | 0.835935 | 1.26E-56 | -1.69E-46 |
| MS.gene053006 | MS.gene070210 | 0.830733 | 2.49E-55 | -1.69E-46 |
| MS.gene053008 | MS.gene070210 | 0.835094 | 2.05E-56 | -1.69E-46 |
| MS.gene053145 | MS.gene070210 | 0.844743 | 6.26E-59 | -1.69E-46 |
| MS.gene053146 | MS.gene070210 | 0.810767 | 9.79E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene070210 | 0.820938 | 5.26E-53 | -1.69E-46 |
| MS.gene053900 | MS.gene070210 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene053967 | MS.gene070210 | 0.80129 | 9.65E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene070210 | 0.801971 | 7.00E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene070210 | 0.81184 | 5.72E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene070210 | 0.849401 | 3.31E-60 | -1.69E-46 |
| MS.gene055166 | MS.gene070210 | 0.80253 | 5.37E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene070210 | 0.801625 | 8.24E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene070210 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene070210 | 0.80197 | 7.00E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene070210 | 0.81513 | 1.08E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene070210 | 0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene070210 | 0.856937 | 2.29E-62 | -1.69E-46 |
| MS.gene055841 | MS.gene070210 | 0.844856 | 5.83E-59 | -1.69E-46 |
| MS.gene056174 | MS.gene070210 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene070210 | 0.804411 | 2.19E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene070210 | 0.818538 | 1.86E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene070210 | 0.816047 | 6.76E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene070210 | 0.811442 | 6.99E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene070210 | 0.826494 | 2.63E-54 | -1.69E-46 |
| MS.gene05690 | MS.gene070210 | 0.806037 | 9.99E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene070210 | 0.805137 | 1.54E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene070210 | 0.826645 | 2.42E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene070210 | 0.828297 | 9.72E-55 | -1.69E-46 |
| MS.gene057598 | MS.gene070210 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene070210 | 0.813092 | 3.05E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene070210 | 0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene070210 | 0.839448 | 1.57E-57 | -1.69E-46 |
| MS.gene058037 | MS.gene070210 | 0.871838 | 5.04E-67 | -1.69E-46 |
| MS.gene058549 | MS.gene070210 | 0.808712 | 2.71E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene070210 | 0.855154 | 7.63E-62 | -1.69E-46 |
| MS.gene058783 | MS.gene070210 | 0.835581 | 1.54E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene070210 | 0.808232 | 3.43E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene070210 | 0.852064 | 5.90E-61 | -1.69E-46 |
| MS.gene05979 | MS.gene070210 | 0.815137 | 1.08E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene070210 | 0.814011 | 1.91E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene070210 | 0.819616 | 1.06E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene070210 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene070210 | 0.834882 | 2.32E-56 | -1.69E-46 |
| MS.gene060521 | MS.gene070210 | 0.814675 | 1.37E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene070210 | 0.824969 | 6.05E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene070210 | -0.811163 | 8.03E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene070210 | 0.802719 | 4.91E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene070210 | -0.833189 | 6.15E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070210.t1 | MTR_1g106025 | 98.214 | 224 | 4 | 0 | 1 | 224 | 785 | 1008 | 2.96e-150 | 443 |
| MS.gene070210.t1 | MTR_1g017520 | 41.629 | 221 | 112 | 6 | 17 | 220 | 825 | 1045 | 8.14e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070210.t1 | AT1G44910 | 39.831 | 236 | 118 | 8 | 1 | 216 | 726 | 957 | 1.00e-25 | 105 |
| MS.gene070210.t1 | AT1G44910 | 54.839 | 93 | 42 | 0 | 1 | 93 | 726 | 818 | 3.34e-21 | 92.0 |
| MS.gene070210.t1 | AT3G19670 | 40.444 | 225 | 119 | 6 | 1 | 216 | 753 | 971 | 9.46e-18 | 82.0 |
| MS.gene070210.t1 | AT3G19670 | 40.444 | 225 | 119 | 6 | 1 | 216 | 772 | 990 | 1.03e-17 | 82.0 |
| MS.gene070210.t1 | AT3G19670 | 40.444 | 225 | 119 | 6 | 1 | 216 | 772 | 990 | 1.03e-17 | 82.0 |
| MS.gene070210.t1 | AT3G19670 | 40.444 | 225 | 119 | 6 | 1 | 216 | 772 | 990 | 1.03e-17 | 82.0 |
Find 61 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTGAAGATGGAGAATT+TGG | 0.202643 | 1.1:-76281049 | MS.gene070210:CDS |
| GCTGTGACCGTGAGATTTCT+TGG | 0.261230 | 1.1:+76281299 | None:intergenic |
| CTTCAAAGTGGGAGGACTTT+AGG | 0.303984 | 1.1:-76282596 | MS.gene070210:CDS |
| CCTTGGTAGAATATAGTAAA+TGG | 0.304243 | 1.1:+76282721 | None:intergenic |
| AGGCAAAGAAGGAGAAAGAT+AGG | 0.347377 | 1.1:-76281521 | MS.gene070210:CDS |
| GTTAGTGTTTGACGAGCTAT+TGG | 0.357741 | 1.1:-76282808 | MS.gene070210:CDS |
| TAAATGGAGCAGCATGGTTC+TGG | 0.364084 | 1.1:-76281142 | MS.gene070210:intron |
| ATTTGGCAATGATGTGGTTA+TGG | 0.386261 | 1.1:-76281032 | MS.gene070210:CDS |
| TTGAAGATAGCCAAGAGTTC+AGG | 0.391024 | 1.1:-76282566 | MS.gene070210:intron |
| GGAAAGAGGAGACACATAAG+AGG | 0.403614 | 1.1:-76281437 | MS.gene070210:CDS |
| TCTCTTGTGCCGACCTTCAT+CGG | 0.411286 | 1.1:+76281111 | None:intergenic |
| AATGAATCTGCCTACCCGTC+TGG | 0.419178 | 1.1:+76281260 | None:intergenic |
| AAGAGGGAGGGCGTGAAAGA+TGG | 0.440219 | 1.1:-76281458 | MS.gene070210:CDS |
| CAAAGGAGAATGAGCGGAAA+CGG | 0.444789 | 1.1:-76282298 | MS.gene070210:CDS |
| ACGAGCTATTGGAACGAGCT+AGG | 0.461914 | 1.1:-76282797 | MS.gene070210:CDS |
| GTAATTCAGACCTGAACTCT+TGG | 0.471385 | 1.1:+76282556 | None:intergenic |
| AGGGCGTGAAAGATGGAAAG+AGG | 0.490338 | 1.1:-76281451 | MS.gene070210:CDS |
| CCTCAGCAAGCAAATGTTTG+AGG | 0.491449 | 1.1:-76282348 | MS.gene070210:CDS |
| GAAGGAAATCGAAGCAGAGA+AGG | 0.519308 | 1.1:-76281485 | MS.gene070210:CDS |
| GAAGGTGGGCAACTTGAAGA+TGG | 0.520610 | 1.1:-76281058 | MS.gene070210:CDS |
| GGCAAAGAAGGAGAAAGATA+GGG | 0.521847 | 1.1:-76281520 | MS.gene070210:CDS |
| ACATCTCTAAAGAAAACAAA+AGG | 0.527123 | 1.1:-76281374 | MS.gene070210:CDS |
| AGCTAGGGAGAAGGAGGAGA+AGG | 0.532994 | 1.1:-76282781 | MS.gene070210:CDS |
| GTCCTCCCACTTTGAAGACT+CGG | 0.536508 | 1.1:+76282602 | None:intergenic |
| AAGGAAGCAGCATCAAAGTC+CGG | 0.543887 | 1.1:-76281355 | MS.gene070210:CDS |
| CGAGCTATTGGAACGAGCTA+GGG | 0.549262 | 1.1:-76282796 | MS.gene070210:CDS |
| AAAGAAGGAGAAAGATAGGG+AGG | 0.551494 | 1.1:-76281517 | MS.gene070210:CDS |
| CGTGATTCTCATAGAGAAGG+TGG | 0.554716 | 1.1:-76281073 | MS.gene070210:CDS |
| ATAGGGAGGAAAGAGAAAGA+AGG | 0.556985 | 1.1:-76281503 | MS.gene070210:CDS |
| TCTGGTCATGAATCCGATGA+AGG | 0.560380 | 1.1:-76281124 | MS.gene070210:CDS |
| AAGGAAATCGAAGCAGAGAA+GGG | 0.571437 | 1.1:-76281484 | MS.gene070210:CDS |
| AGCGGAAACGGAAAGAGGAA+AGG | 0.573802 | 1.1:-76282286 | MS.gene070210:CDS |
| GAATGAGCGGAAACGGAAAG+AGG | 0.577434 | 1.1:-76282291 | MS.gene070210:CDS |
| ATTGGAACGAGCTAGGGAGA+AGG | 0.582333 | 1.1:-76282790 | MS.gene070210:CDS |
| TATCAGTTTCGTGAGAAACA+TGG | 0.587124 | 1.1:+76281331 | None:intergenic |
| GTCATGAATCCGATGAAGGT+CGG | 0.589652 | 1.1:-76281120 | MS.gene070210:CDS |
| CCTCAAACATTTGCTTGCTG+AGG | 0.597514 | 1.1:+76282348 | None:intergenic |
| AAGAGGCAAAGGAGAATGAG+CGG | 0.600590 | 1.1:-76282304 | MS.gene070210:CDS |
| GTTTCGTGAGAAACATGGTC+CGG | 0.606682 | 1.1:+76281336 | None:intergenic |
| GCGGAAACGGAAAGAGGAAA+GGG | 0.606909 | 1.1:-76282285 | MS.gene070210:intron |
| CCATTTACTATATTCTACCA+AGG | 0.607161 | 1.1:-76282721 | MS.gene070210:intron |
| TCTTGGCTATCTTCAAGAAG+TGG | 0.609638 | 1.1:+76282573 | None:intergenic |
| GGAACGAGCTAGGGAGAAGG+AGG | 0.614817 | 1.1:-76282787 | MS.gene070210:CDS |
| CATCGTGATTCTCATAGAGA+AGG | 0.615655 | 1.1:-76281076 | MS.gene070210:CDS |
| TGTTGCACAACTGAAAGAAG+AGG | 0.617967 | 1.1:-76282321 | MS.gene070210:CDS |
| ACAACTGAAAGAAGAGGCAA+AGG | 0.622343 | 1.1:-76282315 | MS.gene070210:CDS |
| GAGAGAACCAAGAAATCTCA+CGG | 0.624556 | 1.1:-76281306 | MS.gene070210:CDS |
| CATTACCGAGTCTTCAAAGT+GGG | 0.634264 | 1.1:-76282607 | MS.gene070210:CDS |
| CGACCGCAAGAAATCCAGAC+GGG | 0.635529 | 1.1:-76281274 | MS.gene070210:intron |
| ATGATGTGGTTATGGATCGA+TGG | 0.635638 | 1.1:-76281024 | MS.gene070210:CDS |
| TGACAGTGTGGACTTAAATG+AGG | 0.647477 | 1.1:-76281400 | MS.gene070210:CDS |
| GTGATTCTCATAGAGAAGGT+GGG | 0.649902 | 1.1:-76281072 | MS.gene070210:CDS |
| CTACCCGTCTGGATTTCTTG+CGG | 0.650111 | 1.1:+76281271 | None:intergenic |
| GAAAGAGGAGACACATAAGA+GGG | 0.650316 | 1.1:-76281436 | MS.gene070210:CDS |
| AAGGTCGGCACAAGAGACAC+AGG | 0.653061 | 1.1:-76281105 | MS.gene070210:CDS |
| TACCGAGTCTTCAAAGTGGG+AGG | 0.657894 | 1.1:-76282604 | MS.gene070210:CDS |
| TGGAGAATTTGGCAATGATG+TGG | 0.661609 | 1.1:-76281038 | MS.gene070210:CDS |
| TAGAACAGACAGTGACAGTG+TGG | 0.677103 | 1.1:-76281412 | MS.gene070210:CDS |
| GCGACCGCAAGAAATCCAGA+CGG | 0.700305 | 1.1:-76281275 | MS.gene070210:CDS |
| ACATTACCGAGTCTTCAAAG+TGG | 0.707562 | 1.1:-76282608 | MS.gene070210:CDS |
| CTTCTCTATGAGAATCACGA+TGG | 0.713895 | 1.1:+76281077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAGAATATTATTAAATT+AGG | + | chr1.1:76281403-76281422 | None:intergenic | 10.0% |
| !! | AAAAATATTTAAAAGAGGAA+AGG | + | chr1.1:76281327-76281346 | None:intergenic | 15.0% |
| !! | AATCAGTAAAAATTAAAATC+AGG | + | chr1.1:76281426-76281445 | None:intergenic | 15.0% |
| !! | TATTTATTAAGAAAGTTCAT+AGG | + | chr1.1:76281986-76282005 | None:intergenic | 15.0% |
| !!! | AAAATAATTTTTGTAGTCAT+TGG | + | chr1.1:76281762-76281781 | None:intergenic | 15.0% |
| !!! | TCTGAAATATAATTTTGTAT+AGG | - | chr1.1:76282287-76282306 | MS.gene070210:CDS | 15.0% |
| !!! | TGATTTTTACTATTCATTAT+TGG | - | chr1.1:76282201-76282220 | MS.gene070210:intron | 15.0% |
| !! | AATGAATAGTAAAAATCAGA+AGG | + | chr1.1:76282199-76282218 | None:intergenic | 20.0% |
| !! | ACCTCAAAAATATTTAAAAG+AGG | + | chr1.1:76281332-76281351 | None:intergenic | 20.0% |
| !! | TAAATCTCAATTCTCAATTA+TGG | + | chr1.1:76281590-76281609 | None:intergenic | 20.0% |
| !!! | TCCTCTTTTAAATATTTTTG+AGG | - | chr1.1:76281328-76281347 | MS.gene070210:CDS | 20.0% |
| !!! | TTTTTCAAATTTTCAACTGT+TGG | - | chr1.1:76282043-76282062 | MS.gene070210:intron | 20.0% |
| ! | AAACATACAATAGTGAACAA+TGG | + | chr1.1:76282610-76282629 | None:intergenic | 25.0% |
| ! | ATTTATACATATGCTCAATC+TGG | - | chr1.1:76281811-76281830 | MS.gene070210:intron | 25.0% |
| ! | GATTGAGCATATGTATAAAT+TGG | + | chr1.1:76281811-76281830 | None:intergenic | 25.0% |
| !! | ACATCTCTAAAGAAAACAAA+AGG | - | chr1.1:76282454-76282473 | MS.gene070210:intron | 25.0% |
| !! | ATATGCTTTTCTAGATCTAT+TGG | - | chr1.1:76281448-76281467 | MS.gene070210:CDS | 25.0% |
| !! | TAATTTTGTATAGGCAAAGA+AGG | - | chr1.1:76282296-76282315 | MS.gene070210:CDS | 25.0% |
| !!! | ACCTTTTACTTTTAAAGCAT+CGG | - | chr1.1:76281900-76281919 | MS.gene070210:intron | 25.0% |
| !!! | ATTTTTTGTTCTGGGATAAA+TGG | - | chr1.1:76282670-76282689 | MS.gene070210:intron | 25.0% |
| !!! | TTTTGTTTTCTTTAGAGATG+TGG | + | chr1.1:76282455-76282474 | None:intergenic | 25.0% |
| AAATCCCTCAGACAATTAAA+AGG | - | chr1.1:76281667-76281686 | MS.gene070210:intron | 30.0% | |
| AATCCCTCAGACAATTAAAA+GGG | - | chr1.1:76281668-76281687 | MS.gene070210:intron | 30.0% | |
| AGACAATTAAAAGGGGAAAA+AGG | - | chr1.1:76281676-76281695 | MS.gene070210:intron | 30.0% | |
| CATGCAAATTTACAATGATC+AGG | - | chr1.1:76281952-76281971 | MS.gene070210:intron | 30.0% | |
| CCATTTACTATATTCTACCA+AGG | - | chr1.1:76281107-76281126 | MS.gene070210:CDS | 30.0% | |
| CCTTGGTAGAATATAGTAAA+TGG | + | chr1.1:76281110-76281129 | None:intergenic | 30.0% | |
| CTGATCATTGTAAATTTGCA+TGG | + | chr1.1:76281954-76281973 | None:intergenic | 30.0% | |
| GGTGAAAAAACGTATTCATT+TGG | - | chr1.1:76282252-76282271 | MS.gene070210:intron | 30.0% | |
| TTGTCACGTTGTTAATGATT+GGG | - | chr1.1:76281160-76281179 | MS.gene070210:intron | 30.0% | |
| ! | AATCACATGTGAAAGCATAT+AGG | - | chr1.1:76281856-76281875 | MS.gene070210:intron | 30.0% |
| !!! | AATGTGCTGATTTTTTGTTC+TGG | - | chr1.1:76282661-76282680 | MS.gene070210:intron | 30.0% |
| !!! | ATGTGCTGATTTTTTGTTCT+GGG | - | chr1.1:76282662-76282681 | MS.gene070210:intron | 30.0% |
| !!! | CCTTTTACTTTTAAAGCATC+GGG | - | chr1.1:76281901-76281920 | MS.gene070210:intron | 30.0% |
| AAAGCAACAGAGTACATATC+TGG | + | chr1.1:76282096-76282115 | None:intergenic | 35.0% | |
| AAATGAGCGCTAATTCATTG+CGG | - | chr1.1:76281703-76281722 | MS.gene070210:intron | 35.0% | |
| ATCATCTCACATATTCTGGT+AGG | + | chr1.1:76282072-76282091 | None:intergenic | 35.0% | |
| ATCCCTCAGACAATTAAAAG+GGG | - | chr1.1:76281669-76281688 | MS.gene070210:intron | 35.0% | |
| ATTTGGCAATGATGTGGTTA+TGG | - | chr1.1:76282796-76282815 | MS.gene070210:CDS | 35.0% | |
| CAACTTGAAGATGGAGAATT+TGG | - | chr1.1:76282779-76282798 | MS.gene070210:CDS | 35.0% | |
| GTTGTCACGTTGTTAATGAT+TGG | - | chr1.1:76281159-76281178 | MS.gene070210:intron | 35.0% | |
| TACTATATTCTACCAAGGTG+TGG | - | chr1.1:76281112-76281131 | MS.gene070210:CDS | 35.0% | |
| TATCAGTTTCGTGAGAAACA+TGG | + | chr1.1:76282500-76282519 | None:intergenic | 35.0% | |
| TGGAATCATCTCACATATTC+TGG | + | chr1.1:76282076-76282095 | None:intergenic | 35.0% | |
| ! | AGATATGTACTCTGTTGCTT+TGG | - | chr1.1:76282095-76282114 | MS.gene070210:intron | 35.0% |
| ! | ATCTTTTGCGTAATTGTTGC+AGG | - | chr1.1:76281197-76281216 | MS.gene070210:intron | 35.0% |
| !! | CCCGATGCTTTAAAAGTAAA+AGG | + | chr1.1:76281904-76281923 | None:intergenic | 35.0% |
| !! | GATATGTACTCTGTTGCTTT+GGG | - | chr1.1:76282096-76282115 | MS.gene070210:intron | 35.0% |
| !! | TTCCCCTTTTAATTGTCTGA+GGG | + | chr1.1:76281674-76281693 | None:intergenic | 35.0% |
| !! | TTTCCCCTTTTAATTGTCTG+AGG | + | chr1.1:76281675-76281694 | None:intergenic | 35.0% |
| AAAGAAGGAGAAAGATAGGG+AGG | - | chr1.1:76282311-76282330 | MS.gene070210:CDS | 40.0% | |
| AAGCAGAGAAGGGAAAAAGA+GGG | - | chr1.1:76282354-76282373 | MS.gene070210:CDS | 40.0% | |
| AAGGAAATCGAAGCAGAGAA+GGG | - | chr1.1:76282344-76282363 | MS.gene070210:CDS | 40.0% | |
| ACAACTGAAAGAAGAGGCAA+AGG | - | chr1.1:76281513-76281532 | MS.gene070210:CDS | 40.0% | |
| ACATTACCGAGTCTTCAAAG+TGG | - | chr1.1:76281220-76281239 | MS.gene070210:intron | 40.0% | |
| AGGCAAAGAAGGAGAAAGAT+AGG | - | chr1.1:76282307-76282326 | MS.gene070210:CDS | 40.0% | |
| ATAGGGAGGAAAGAGAAAGA+AGG | - | chr1.1:76282325-76282344 | MS.gene070210:CDS | 40.0% | |
| ATGATGTGGTTATGGATCGA+TGG | - | chr1.1:76282804-76282823 | MS.gene070210:CDS | 40.0% | |
| ATTATTGGACTCACTTGCAG+TGG | - | chr1.1:76282216-76282235 | MS.gene070210:intron | 40.0% | |
| CATCGTGATTCTCATAGAGA+AGG | - | chr1.1:76282752-76282771 | MS.gene070210:CDS | 40.0% | |
| CATTACCGAGTCTTCAAAGT+GGG | - | chr1.1:76281221-76281240 | MS.gene070210:intron | 40.0% | |
| CTTCTCTATGAGAATCACGA+TGG | + | chr1.1:76282754-76282773 | None:intergenic | 40.0% | |
| GAAAGAGGAGACACATAAGA+GGG | - | chr1.1:76282392-76282411 | MS.gene070210:intron | 40.0% | |
| GAGAGAACCAAGAAATCTCA+CGG | - | chr1.1:76282522-76282541 | MS.gene070210:intron | 40.0% | |
| GGCAAAGAAGGAGAAAGATA+GGG | - | chr1.1:76282308-76282327 | MS.gene070210:CDS | 40.0% | |
| GTAATTCAGACCTGAACTCT+TGG | + | chr1.1:76281275-76281294 | None:intergenic | 40.0% | |
| GTGATTCTCATAGAGAAGGT+GGG | - | chr1.1:76282756-76282775 | MS.gene070210:CDS | 40.0% | |
| TACTGTTCTCCAATCCACAT+AGG | - | chr1.1:76282145-76282164 | MS.gene070210:intron | 40.0% | |
| TAGAAGTAAGCTTGCCTATG+TGG | + | chr1.1:76282162-76282181 | None:intergenic | 40.0% | |
| TCTTGGCTATCTTCAAGAAG+TGG | + | chr1.1:76281258-76281277 | None:intergenic | 40.0% | |
| TGACAGTGTGGACTTAAATG+AGG | - | chr1.1:76282428-76282447 | MS.gene070210:intron | 40.0% | |
| TGCAGTGGTTGCATTATCTT+TGG | - | chr1.1:76282231-76282250 | MS.gene070210:intron | 40.0% | |
| TGGAGAATTTGGCAATGATG+TGG | - | chr1.1:76282790-76282809 | MS.gene070210:CDS | 40.0% | |
| TGTTGCACAACTGAAAGAAG+AGG | - | chr1.1:76281507-76281526 | MS.gene070210:CDS | 40.0% | |
| TTGAAGATAGCCAAGAGTTC+AGG | - | chr1.1:76281262-76281281 | MS.gene070210:intron | 40.0% | |
| AAGAGGCAAAGGAGAATGAG+CGG | - | chr1.1:76281524-76281543 | MS.gene070210:intron | 45.0% | |
| AAGGAAGCAGCATCAAAGTC+CGG | - | chr1.1:76282473-76282492 | MS.gene070210:intron | 45.0% | |
| AGAGAAGGGAAAAAGAGGGA+GGG | - | chr1.1:76282358-76282377 | MS.gene070210:CDS | 45.0% | |
| CAAAGGAGAATGAGCGGAAA+CGG | - | chr1.1:76281530-76281549 | MS.gene070210:intron | 45.0% | |
| CCTCAGCAAGCAAATGTTTG+AGG | - | chr1.1:76281480-76281499 | MS.gene070210:CDS | 45.0% | |
| CGTGATTCTCATAGAGAAGG+TGG | - | chr1.1:76282755-76282774 | MS.gene070210:CDS | 45.0% | |
| CTTCAAAGTGGGAGGACTTT+AGG | - | chr1.1:76281232-76281251 | MS.gene070210:intron | 45.0% | |
| GAAGCAGAGAAGGGAAAAAG+AGG | - | chr1.1:76282353-76282372 | MS.gene070210:CDS | 45.0% | |
| GAAGGAAATCGAAGCAGAGA+AGG | - | chr1.1:76282343-76282362 | MS.gene070210:CDS | 45.0% | |
| GGAAAGAGGAGACACATAAG+AGG | - | chr1.1:76282391-76282410 | MS.gene070210:intron | 45.0% | |
| GTAAGCTTGCCTATGTGGAT+TGG | + | chr1.1:76282157-76282176 | None:intergenic | 45.0% | |
| GTCATGAATCCGATGAAGGT+CGG | - | chr1.1:76282708-76282727 | MS.gene070210:intron | 45.0% | |
| GTTTCGTGAGAAACATGGTC+CGG | + | chr1.1:76282495-76282514 | None:intergenic | 45.0% | |
| TAAATGGAGCAGCATGGTTC+TGG | - | chr1.1:76282686-76282705 | MS.gene070210:intron | 45.0% | |
| TAGAACAGACAGTGACAGTG+TGG | - | chr1.1:76282416-76282435 | MS.gene070210:intron | 45.0% | |
| TCTACCAAGGTGTGGTATTG+CGG | - | chr1.1:76281120-76281139 | MS.gene070210:CDS | 45.0% | |
| TCTGGTCATGAATCCGATGA+AGG | - | chr1.1:76282704-76282723 | MS.gene070210:intron | 45.0% | |
| ! | CCTCAAACATTTGCTTGCTG+AGG | + | chr1.1:76281483-76281502 | None:intergenic | 45.0% |
| AATGAATCTGCCTACCCGTC+TGG | + | chr1.1:76282571-76282590 | None:intergenic | 50.0% | |
| ACGAGCTATTGGAACGAGCT+AGG | - | chr1.1:76281031-76281050 | MS.gene070210:CDS | 50.0% | |
| AGCGGAAACGGAAAGAGGAA+AGG | - | chr1.1:76281542-76281561 | MS.gene070210:intron | 50.0% | |
| AGGGCGTGAAAGATGGAAAG+AGG | - | chr1.1:76282377-76282396 | MS.gene070210:intron | 50.0% | |
| ATGACCGCAATACCACACCT+TGG | + | chr1.1:76281127-76281146 | None:intergenic | 50.0% | |
| ATTGGAACGAGCTAGGGAGA+AGG | - | chr1.1:76281038-76281057 | MS.gene070210:CDS | 50.0% | |
| CAGAGAAGGGAAAAAGAGGG+AGG | - | chr1.1:76282357-76282376 | MS.gene070210:CDS | 50.0% | |
| CGAGCTATTGGAACGAGCTA+GGG | - | chr1.1:76281032-76281051 | MS.gene070210:CDS | 50.0% | |
| CTACCCGTCTGGATTTCTTG+CGG | + | chr1.1:76282560-76282579 | None:intergenic | 50.0% | |
| CTGGGATAAATGGAGCAGCA+TGG | - | chr1.1:76282680-76282699 | MS.gene070210:intron | 50.0% | |
| GAAGGTGGGCAACTTGAAGA+TGG | - | chr1.1:76282770-76282789 | MS.gene070210:CDS | 50.0% | |
| GAATGAGCGGAAACGGAAAG+AGG | - | chr1.1:76281537-76281556 | MS.gene070210:intron | 50.0% | |
| GCGGAAACGGAAAGAGGAAA+GGG | - | chr1.1:76281543-76281562 | MS.gene070210:intron | 50.0% | |
| GCTGTGACCGTGAGATTTCT+TGG | + | chr1.1:76282532-76282551 | None:intergenic | 50.0% | |
| TACCGAGTCTTCAAAGTGGG+AGG | - | chr1.1:76281224-76281243 | MS.gene070210:intron | 50.0% | |
| ! | GTCCTCCCACTTTGAAGACT+CGG | + | chr1.1:76281229-76281248 | None:intergenic | 50.0% |
| ! | TCTCTTGTGCCGACCTTCAT+CGG | + | chr1.1:76282720-76282739 | None:intergenic | 50.0% |
| AAGGTCGGCACAAGAGACAC+AGG | - | chr1.1:76282723-76282742 | MS.gene070210:CDS | 55.0% | |
| AGCTAGGGAGAAGGAGGAGA+AGG | - | chr1.1:76281047-76281066 | MS.gene070210:CDS | 55.0% | |
| CGACCGCAAGAAATCCAGAC+GGG | - | chr1.1:76282554-76282573 | MS.gene070210:intron | 55.0% | |
| CGCAAGAAATCCAGACGGGT+AGG | - | chr1.1:76282558-76282577 | MS.gene070210:intron | 55.0% | |
| GCGACCGCAAGAAATCCAGA+CGG | - | chr1.1:76282553-76282572 | MS.gene070210:intron | 55.0% | |
| ! | AAGAGGGAGGGCGTGAAAGA+TGG | - | chr1.1:76282370-76282389 | MS.gene070210:intron | 55.0% |
| GGAACGAGCTAGGGAGAAGG+AGG | - | chr1.1:76281041-76281060 | MS.gene070210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 76281021 | 76282829 | 76281021 | ID=MS.gene070210 |
| chr1.1 | mRNA | 76281021 | 76282829 | 76281021 | ID=MS.gene070210.t1;Parent=MS.gene070210 |
| chr1.1 | exon | 76282722 | 76282829 | 76282722 | ID=MS.gene070210.t1.exon1;Parent=MS.gene070210.t1 |
| chr1.1 | CDS | 76282722 | 76282829 | 76282722 | ID=cds.MS.gene070210.t1;Parent=MS.gene070210.t1 |
| chr1.1 | exon | 76282567 | 76282631 | 76282567 | ID=MS.gene070210.t1.exon2;Parent=MS.gene070210.t1 |
| chr1.1 | CDS | 76282567 | 76282631 | 76282567 | ID=cds.MS.gene070210.t1;Parent=MS.gene070210.t1 |
| chr1.1 | exon | 76282286 | 76282388 | 76282286 | ID=MS.gene070210.t1.exon3;Parent=MS.gene070210.t1 |
| chr1.1 | CDS | 76282286 | 76282388 | 76282286 | ID=cds.MS.gene070210.t1;Parent=MS.gene070210.t1 |
| chr1.1 | exon | 76281275 | 76281541 | 76281275 | ID=MS.gene070210.t1.exon4;Parent=MS.gene070210.t1 |
| chr1.1 | CDS | 76281275 | 76281541 | 76281275 | ID=cds.MS.gene070210.t1;Parent=MS.gene070210.t1 |
| chr1.1 | exon | 76281021 | 76281152 | 76281021 | ID=MS.gene070210.t1.exon5;Parent=MS.gene070210.t1 |
| chr1.1 | CDS | 76281021 | 76281152 | 76281021 | ID=cds.MS.gene070210.t1;Parent=MS.gene070210.t1 |
| Gene Sequence |
| Protein sequence |
