Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070713.t1 | XP_003610500.1 | 97.2 | 215 | 6 | 0 | 5 | 219 | 1 | 215 | 1.60E-119 | 438.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070713.t1 | Q8GYK2 | 77.5 | 213 | 48 | 0 | 7 | 219 | 47 | 259 | 6.9e-100 | 364.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070713.t1 | G7JKH0 | 97.2 | 215 | 6 | 0 | 5 | 219 | 1 | 215 | 1.1e-119 | 438.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene070713 | -0.858466 | 8.08E-63 | -1.69E-46 |
| MS.gene049419 | MS.gene070713 | 0.86796 | 9.31E-66 | -1.69E-46 |
| MS.gene049452 | MS.gene070713 | -0.8067 | 7.24E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene070713 | -0.815596 | 8.53E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene070713 | -0.823218 | 1.56E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene070713 | -0.875236 | 3.61E-68 | -1.69E-46 |
| MS.gene050414 | MS.gene070713 | -0.814443 | 1.54E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene070713 | -0.852104 | 5.74E-61 | -1.69E-46 |
| MS.gene051122 | MS.gene070713 | -0.836434 | 9.38E-57 | -1.69E-46 |
| MS.gene051332 | MS.gene070713 | -0.813131 | 2.99E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene070713 | -0.833758 | 4.44E-56 | -1.69E-46 |
| MS.gene051924 | MS.gene070713 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene051926 | MS.gene070713 | 0.807217 | 5.63E-50 | -1.69E-46 |
| MS.gene05216 | MS.gene070713 | -0.83717 | 6.09E-57 | -1.69E-46 |
| MS.gene052197 | MS.gene070713 | -0.80379 | 2.95E-49 | -1.69E-46 |
| MS.gene052534 | MS.gene070713 | -0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene070713 | -0.822278 | 2.58E-53 | -1.69E-46 |
| MS.gene052674 | MS.gene070713 | -0.834417 | 3.03E-56 | -1.69E-46 |
| MS.gene052675 | MS.gene070713 | -0.835025 | 2.13E-56 | -1.69E-46 |
| MS.gene052677 | MS.gene070713 | -0.841101 | 5.83E-58 | -1.69E-46 |
| MS.gene052954 | MS.gene070713 | -0.820776 | 5.74E-53 | -1.69E-46 |
| MS.gene05308 | MS.gene070713 | -0.830017 | 3.72E-55 | -1.69E-46 |
| MS.gene053321 | MS.gene070713 | -0.808535 | 2.95E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene070713 | -0.805906 | 1.06E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene070713 | -0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene053931 | MS.gene070713 | -0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene070713 | 0.813 | 3.19E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene070713 | -0.861331 | 1.11E-63 | -1.69E-46 |
| MS.gene054657 | MS.gene070713 | -0.800373 | 1.49E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene070713 | -0.819672 | 1.03E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene070713 | -0.828841 | 7.18E-55 | -1.69E-46 |
| MS.gene055063 | MS.gene070713 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene070713 | -0.832954 | 7.04E-56 | -1.69E-46 |
| MS.gene055841 | MS.gene070713 | -0.819888 | 9.17E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene070713 | -0.804744 | 1.86E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene070713 | -0.803673 | 3.12E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene070713 | -0.858322 | 8.92E-63 | -1.69E-46 |
| MS.gene056064 | MS.gene070713 | -0.826196 | 3.10E-54 | -1.69E-46 |
| MS.gene056480 | MS.gene070713 | -0.838326 | 3.07E-57 | -1.69E-46 |
| MS.gene056509 | MS.gene070713 | -0.801666 | 8.09E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene070713 | -0.831149 | 1.97E-55 | -1.69E-46 |
| MS.gene056779 | MS.gene070713 | -0.816885 | 4.39E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene070713 | -0.841035 | 6.06E-58 | -1.69E-46 |
| MS.gene057155 | MS.gene070713 | -0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene057156 | MS.gene070713 | 0.830279 | 3.21E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene070713 | -0.835217 | 1.91E-56 | -1.69E-46 |
| MS.gene057371 | MS.gene070713 | -0.819613 | 1.06E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene070713 | -0.815711 | 8.04E-52 | -1.69E-46 |
| MS.gene057600 | MS.gene070713 | -0.806691 | 7.27E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene070713 | -0.839271 | 1.75E-57 | -1.69E-46 |
| MS.gene058223 | MS.gene070713 | 0.879382 | 1.30E-69 | -1.69E-46 |
| MS.gene058279 | MS.gene070713 | -0.802534 | 5.36E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene070713 | -0.821712 | 3.49E-53 | -1.69E-46 |
| MS.gene059439 | MS.gene070713 | -0.815447 | 9.20E-52 | -1.69E-46 |
| MS.gene059952 | MS.gene070713 | -0.806972 | 6.34E-50 | -1.69E-46 |
| MS.gene060435 | MS.gene070713 | -0.808943 | 2.42E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene070713 | -0.817535 | 3.14E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene070713 | 0.808262 | 3.38E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene070713 | -0.818588 | 1.81E-52 | -1.69E-46 |
| MS.gene060850 | MS.gene070713 | -0.845112 | 4.97E-59 | -1.69E-46 |
| MS.gene060851 | MS.gene070713 | -0.853174 | 2.84E-61 | -1.69E-46 |
| MS.gene060852 | MS.gene070713 | -0.850922 | 1.24E-60 | -1.69E-46 |
| MS.gene060879 | MS.gene070713 | -0.817313 | 3.52E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene070713 | -0.815575 | 8.62E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene070713 | -0.814255 | 1.69E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene070713 | -0.806332 | 8.66E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene070713 | -0.817935 | 2.55E-52 | -1.69E-46 |
| MS.gene06121 | MS.gene070713 | -0.805158 | 1.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGTTAGTTGCGAGTTTA+AGG | 0.172548 | 8.4:-1474828 | MS.gene070713:intron |
| CTGTTGTACCCTAAAACTTT+AGG | 0.267673 | 8.4:-1475612 | MS.gene070713:CDS |
| CCACAGATAAATATATTGTT+AGG | 0.286098 | 8.4:+1475754 | None:intergenic |
| CAGCCCATGGGACCATAGTA+TGG | 0.302977 | 8.4:+1474910 | None:intergenic |
| ATGGTTCTGTAATGCCTTCA+TGG | 0.330844 | 8.4:-1476795 | MS.gene070713:CDS |
| AATAATATGCATACAGTTGC+AGG | 0.332819 | 8.4:+1477742 | None:intergenic |
| AGCAAACTATTCTCGTCGTT+TGG | 0.346185 | 8.4:+1475835 | None:intergenic |
| TCCTTCTGCTCCTCACGCTC+CGG | 0.418740 | 8.4:-1477768 | MS.gene070713:CDS |
| GTTCTGTGGTTACACGGTCT+TGG | 0.419005 | 8.4:-1477866 | MS.gene070713:CDS |
| ATAAGTACCCGCTTAGCTTC+AGG | 0.433033 | 8.4:+1475528 | None:intergenic |
| TCTGTAACAGATGAATTAAA+CGG | 0.437889 | 8.4:+1475561 | None:intergenic |
| TGGTATTATTAGGCTTATCC+TGG | 0.441301 | 8.4:-1474729 | MS.gene070713:intron |
| GTCTTGATGGGTTCATTGGC+AGG | 0.441657 | 8.4:+1477833 | None:intergenic |
| TAATGTCTTGATGGGTTCAT+TGG | 0.446375 | 8.4:+1477829 | None:intergenic |
| CTCCTCGTTGTTTATTGAGT+GGG | 0.455255 | 8.4:+1474701 | None:intergenic |
| AGAAGTGAATAATGTCTTGA+TGG | 0.461638 | 8.4:+1477820 | None:intergenic |
| CACAGATAAATATATTGTTA+GGG | 0.468738 | 8.4:+1475755 | None:intergenic |
| AGCAGAAGGAAAAGACCATT+TGG | 0.468754 | 8.4:+1477781 | None:intergenic |
| AGCTAAAGCATCTTGAGTCT+TGG | 0.470537 | 8.4:-1474680 | MS.gene070713:CDS |
| CATACTATGGTCCCATGGGC+TGG | 0.472438 | 8.4:-1474909 | MS.gene070713:CDS |
| TTATACAGACACCCATACTA+TGG | 0.480186 | 8.4:-1474922 | MS.gene070713:intron |
| CATTTGGTACTTCTGAATTG+AGG | 0.492380 | 8.4:+1477797 | None:intergenic |
| TGCATACAGTTGCAGGTGAC+CGG | 0.492555 | 8.4:+1477749 | None:intergenic |
| CTCAATTCAGAAGTACCAAA+TGG | 0.494388 | 8.4:-1477796 | MS.gene070713:CDS |
| ACAAAACTTCGAGCCGCCAT+TGG | 0.521401 | 8.4:+1477887 | None:intergenic |
| TTTATTGAGTGGGCAAGACC+AGG | 0.534942 | 8.4:+1474711 | None:intergenic |
| GCTCCTCGTTGTTTATTGAG+TGG | 0.540846 | 8.4:+1474700 | None:intergenic |
| TACCCTAAAACTTTAGGTGG+AGG | 0.541302 | 8.4:-1475606 | MS.gene070713:CDS |
| CCTAACAATATATTTATCTG+TGG | 0.541354 | 8.4:-1475754 | MS.gene070713:CDS |
| AATTACACCTGAAGCTAAGC+GGG | 0.545193 | 8.4:-1475535 | MS.gene070713:intron |
| TTACACGGTCTTGGTGACTC+TGG | 0.551312 | 8.4:-1477857 | MS.gene070713:CDS |
| TTTATCTGTGGGTTCAGTCA+AGG | 0.556548 | 8.4:-1475742 | MS.gene070713:CDS |
| ACCGGAGCGTGAGGAGCAGA+AGG | 0.561036 | 8.4:+1477767 | None:intergenic |
| TTGCAGGTGACCGGAGCGTG+AGG | 0.561766 | 8.4:+1477758 | None:intergenic |
| GAAGTGAATAATGTCTTGAT+GGG | 0.571272 | 8.4:+1477821 | None:intergenic |
| CACCCATACTATGGTCCCAT+GGG | 0.572624 | 8.4:-1474913 | MS.gene070713:CDS |
| TCATGAATGTCAAACCATGA+AGG | 0.576481 | 8.4:+1476781 | None:intergenic |
| GATACAGATTGAAAATTAGG+AGG | 0.576640 | 8.4:+1474635 | None:intergenic |
| AAAACAGTATTGTTCGAGGC+AGG | 0.580046 | 8.4:-1474881 | MS.gene070713:CDS |
| TTGTACCCTAAAACTTTAGG+TGG | 0.581553 | 8.4:-1475609 | MS.gene070713:CDS |
| GCTAGACTTACAGCAGTCAC+AGG | 0.585127 | 8.4:+1476754 | None:intergenic |
| CTAACAATATATTTATCTGT+GGG | 0.585694 | 8.4:-1475753 | MS.gene070713:CDS |
| AGCCCATGGGACCATAGTAT+GGG | 0.591504 | 8.4:+1474911 | None:intergenic |
| ACACCCATACTATGGTCCCA+TGG | 0.599983 | 8.4:-1474914 | MS.gene070713:CDS |
| TGACAAAACAGTATTGTTCG+AGG | 0.612436 | 8.4:-1474885 | MS.gene070713:CDS |
| ATAGACAAGGAAGTAGCTGC+TGG | 0.614205 | 8.4:-1475784 | MS.gene070713:CDS |
| AAAATTAGGAGGAACTCTGT+AGG | 0.620221 | 8.4:+1474646 | None:intergenic |
| ATCTGTGGGTTCAGTCAAGG+AGG | 0.657320 | 8.4:-1475739 | MS.gene070713:intron |
| TGTTCATGCTACAATAGACA+AGG | 0.664047 | 8.4:-1475797 | MS.gene070713:CDS |
| CAGAACACTAGCCAATGTCA+AGG | 0.665097 | 8.4:+1475632 | None:intergenic |
| AAATTACACCTGAAGCTAAG+CGG | 0.677674 | 8.4:-1475536 | MS.gene070713:CDS |
| TGCCCACTCAATAAACAACG+AGG | 0.786416 | 8.4:-1474703 | MS.gene070713:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTATTGTTTAATTTT+GGG | - | chr8.4:1476042-1476061 | MS.gene070713:intron | 10.0% |
| !! | AAATCATTATGTTATATGTA+GGG | - | chr8.4:1477484-1477503 | MS.gene070713:intron | 15.0% |
| !! | GAAAAAATAACCAAATTATA+GGG | + | chr8.4:1477760-1477779 | None:intergenic | 15.0% |
| !! | TAAATCATTATGTTATATGT+AGG | - | chr8.4:1477483-1477502 | MS.gene070713:intron | 15.0% |
| !! | TATTAACTTTCTGTATTTAA+AGG | + | chr8.4:1477273-1477292 | None:intergenic | 15.0% |
| !! | TGAAAAAATAACCAAATTAT+AGG | + | chr8.4:1477761-1477780 | None:intergenic | 15.0% |
| !! | TGTAAAATTAGGTAAATATT+TGG | + | chr8.4:1475382-1475401 | None:intergenic | 15.0% |
| !! | TTAATATCTCATTTGTAATT+TGG | + | chr8.4:1475635-1475654 | None:intergenic | 15.0% |
| !!! | ATAATATCATTTTCTAAAGT+CGG | + | chr8.4:1475709-1475728 | None:intergenic | 15.0% |
| !!! | ATATATCCATTTTTCTATTA+AGG | + | chr8.4:1476856-1476875 | None:intergenic | 15.0% |
| !!! | ATTTGATTTATTGAATTTTC+TGG | - | chr8.4:1477555-1477574 | MS.gene070713:intron | 15.0% |
| !!! | CAACATAATTTTGTAAAATT+AGG | + | chr8.4:1475393-1475412 | None:intergenic | 15.0% |
| !!! | CTAAAAAGTATATATAACAA+AGG | + | chr8.4:1476372-1476391 | None:intergenic | 15.0% |
| !!! | GTTGAATTATTGTTTAATTT+TGG | - | chr8.4:1476041-1476060 | MS.gene070713:intron | 15.0% |
| !! | AATGTAGTAAGAATACAAAT+TGG | - | chr8.4:1475999-1476018 | MS.gene070713:intron | 20.0% |
| !! | ACATATTAGTATAGCTTATA+TGG | - | chr8.4:1475161-1475180 | MS.gene070713:intron | 20.0% |
| !! | ACATCATATAACAATCTTAA+AGG | - | chr8.4:1476533-1476552 | MS.gene070713:intron | 20.0% |
| !! | ATTGTACAGAATTAATATAC+AGG | + | chr8.4:1475873-1475892 | None:intergenic | 20.0% |
| !! | CACAGATAAATATATTGTTA+GGG | + | chr8.4:1476796-1476815 | None:intergenic | 20.0% |
| !! | CTAACAATATATTTATCTGT+GGG | - | chr8.4:1476795-1476814 | MS.gene070713:CDS | 20.0% |
| !! | TATTGACATTTGGTATTATT+AGG | - | chr8.4:1477809-1477828 | MS.gene070713:CDS | 20.0% |
| !! | TCGATAATAATTAAGAAAAG+AGG | + | chr8.4:1474863-1474882 | None:intergenic | 20.0% |
| !! | TTATGTGGAAATATTTAGTT+TGG | - | chr8.4:1477155-1477174 | MS.gene070713:intron | 20.0% |
| !! | TTGTACAGAATTAATATACA+GGG | + | chr8.4:1475872-1475891 | None:intergenic | 20.0% |
| !! | TTTATTAAAATATGACCTTG+CGG | - | chr8.4:1475281-1475300 | MS.gene070713:intron | 20.0% |
| !!! | AAATAAATATGCTGTTTCAA+AGG | + | chr8.4:1477193-1477212 | None:intergenic | 20.0% |
| !!! | GTCGATAATATTTTCAATTT+AGG | - | chr8.4:1477430-1477449 | MS.gene070713:intron | 20.0% |
| !!! | TAATATCATTTTCTAAAGTC+GGG | + | chr8.4:1475708-1475727 | None:intergenic | 20.0% |
| !!! | TTTTGTTTATTCTTTGTAGA+TGG | - | chr8.4:1475734-1475753 | MS.gene070713:intron | 20.0% |
| ! | AAACTAAACCTATGTAACAA+TGG | + | chr8.4:1474915-1474934 | None:intergenic | 25.0% |
| ! | AAATATTTGGACATCTATTG+TGG | + | chr8.4:1475369-1475388 | None:intergenic | 25.0% |
| ! | AAGACACTAATTTATATAGC+TGG | - | chr8.4:1477522-1477541 | MS.gene070713:intron | 25.0% |
| ! | ACCAAATGTCAATATTGATA+TGG | + | chr8.4:1477803-1477822 | None:intergenic | 25.0% |
| ! | AGGACAGATCATATATTAAT+AGG | + | chr8.4:1475570-1475589 | None:intergenic | 25.0% |
| ! | ATAAATAAAACCAACTACCA+AGG | + | chr8.4:1475534-1475553 | None:intergenic | 25.0% |
| ! | CCACAGATAAATATATTGTT+AGG | + | chr8.4:1476797-1476816 | None:intergenic | 25.0% |
| ! | CCTAACAATATATTTATCTG+TGG | - | chr8.4:1476794-1476813 | MS.gene070713:CDS | 25.0% |
| ! | TAAATTAGTGTCTTGACAAA+TGG | + | chr8.4:1477516-1477535 | None:intergenic | 25.0% |
| ! | TAGTAAGCAAACAATTATTG+AGG | + | chr8.4:1476276-1476295 | None:intergenic | 25.0% |
| ! | TAGTATAGCTTATATGGAAA+TGG | - | chr8.4:1475167-1475186 | MS.gene070713:intron | 25.0% |
| ! | TATATGATGTTTACAAGACA+TGG | + | chr8.4:1476523-1476542 | None:intergenic | 25.0% |
| ! | TCCATATCAATATTGACATT+TGG | - | chr8.4:1477799-1477818 | MS.gene070713:CDS | 25.0% |
| ! | TCTGTAACAGATGAATTAAA+CGG | + | chr8.4:1476990-1477009 | None:intergenic | 25.0% |
| ! | TCTGTACAATTAATCATGAA+GGG | - | chr8.4:1475883-1475902 | MS.gene070713:intron | 25.0% |
| ! | TTACTAAGTTAACAATCAAG+AGG | + | chr8.4:1476207-1476226 | None:intergenic | 25.0% |
| ! | TTCTGTACAATTAATCATGA+AGG | - | chr8.4:1475882-1475901 | MS.gene070713:intron | 25.0% |
| !! | CCATGTCTTTAAATTGTTTT+CGG | - | chr8.4:1475102-1475121 | MS.gene070713:intron | 25.0% |
| !! | TGATTTTGTACATTTATCGT+GGG | - | chr8.4:1476113-1476132 | MS.gene070713:intron | 25.0% |
| !!! | AACTAACACCAATTTTTTCA+AGG | + | chr8.4:1477711-1477730 | None:intergenic | 25.0% |
| !!! | ATCCTTATTTTTAGTATGCT+TGG | - | chr8.4:1475937-1475956 | MS.gene070713:intron | 25.0% |
| !!! | GTTTAATTTTGGGTTACTAA+AGG | - | chr8.4:1476052-1476071 | MS.gene070713:intron | 25.0% |
| !!! | TCCTTATTTTTAGTATGCTT+GGG | - | chr8.4:1475938-1475957 | MS.gene070713:intron | 25.0% |
| AAACTATCATGTAGAGCTTA+TGG | + | chr8.4:1475135-1475154 | None:intergenic | 30.0% | |
| AATAATATGCATACAGTTGC+AGG | + | chr8.4:1474809-1474828 | None:intergenic | 30.0% | |
| ACATGCTCATGGAATTAATT+AGG | - | chr8.4:1475474-1475493 | MS.gene070713:intron | 30.0% | |
| AGAAGTGAATAATGTCTTGA+TGG | + | chr8.4:1474731-1474750 | None:intergenic | 30.0% | |
| ATTCCAAGTTCCCTATAATT+TGG | - | chr8.4:1477747-1477766 | MS.gene070713:intron | 30.0% | |
| ATTGATATGGACAGAATTGT+AGG | + | chr8.4:1477790-1477809 | None:intergenic | 30.0% | |
| CCGAAAACAATTTAAAGACA+TGG | + | chr8.4:1475105-1475124 | None:intergenic | 30.0% | |
| GAAGTGAATAATGTCTTGAT+GGG | + | chr8.4:1474730-1474749 | None:intergenic | 30.0% | |
| TAACCAAATTATAGGGAACT+TGG | + | chr8.4:1477753-1477772 | None:intergenic | 30.0% | |
| TAATGATTTATTCGAGTGCA+AGG | + | chr8.4:1477473-1477492 | None:intergenic | 30.0% | |
| TATAACATTGTGTACATACC+AGG | + | chr8.4:1477611-1477630 | None:intergenic | 30.0% | |
| TTAAAGAAAACCAGTTGAAC+TGG | + | chr8.4:1477334-1477353 | None:intergenic | 30.0% | |
| TTCACTTGAGAAAGATGAAA+AGG | + | chr8.4:1476337-1476356 | None:intergenic | 30.0% | |
| TTGATATGGACAGAATTGTA+GGG | + | chr8.4:1477789-1477808 | None:intergenic | 30.0% | |
| TTTGAACTAAAAACAGAGAG+AGG | + | chr8.4:1476561-1476580 | None:intergenic | 30.0% | |
| ! | AATAGTCTCAAATGTGCTTT+TGG | + | chr8.4:1475054-1475073 | None:intergenic | 30.0% |
| ! | ACACATAAGGTTTTCTCTAT+TGG | + | chr8.4:1477249-1477268 | None:intergenic | 30.0% |
| ! | ATCTAAAAATTTTGTCGACC+TGG | - | chr8.4:1477590-1477609 | MS.gene070713:intron | 30.0% |
| ! | CACATAAGGTTTTCTCTATT+GGG | + | chr8.4:1477248-1477267 | None:intergenic | 30.0% |
| ! | GACTATTTGTTAGAGCTTTA+AGG | - | chr8.4:1475067-1475086 | MS.gene070713:intron | 30.0% |
| ! | GTGATTTTGTACATTTATCG+TGG | - | chr8.4:1476112-1476131 | MS.gene070713:intron | 30.0% |
| ! | TGTAGCATGAACATTTTGAA+CGG | + | chr8.4:1476744-1476763 | None:intergenic | 30.0% |
| ! | TGTATTTAAAGGCACACATA+AGG | + | chr8.4:1477262-1477281 | None:intergenic | 30.0% |
| !! | AAATATGCTGTTTCAAAGGA+CGG | + | chr8.4:1477189-1477208 | None:intergenic | 30.0% |
| !! | AGGTCGACAAAATTTTTAGA+TGG | + | chr8.4:1477591-1477610 | None:intergenic | 30.0% |
| !! | CAATTACTTTTATCCTCTTC+AGG | - | chr8.4:1476627-1476646 | MS.gene070713:intron | 30.0% |
| !! | TGTTAGAGCTTTAAGGAAAA+AGG | - | chr8.4:1475074-1475093 | MS.gene070713:intron | 30.0% |
| !!! | AATTTTTTCAAGGAAAGGAG+GGG | + | chr8.4:1477701-1477720 | None:intergenic | 30.0% |
| !!! | ACACCAATTTTTTCAAGGAA+AGG | + | chr8.4:1477706-1477725 | None:intergenic | 30.0% |
| !!! | CAACTGGTTTTCTTTAATCA+GGG | - | chr8.4:1477337-1477356 | MS.gene070713:intron | 30.0% |
| !!! | CAATTTTTTCAAGGAAAGGA+GGG | + | chr8.4:1477702-1477721 | None:intergenic | 30.0% |
| !!! | CCTTATTTTTAGTATGCTTG+GGG | - | chr8.4:1475939-1475958 | MS.gene070713:intron | 30.0% |
| !!! | TCAACTGGTTTTCTTTAATC+AGG | - | chr8.4:1477336-1477355 | MS.gene070713:intron | 30.0% |
| AAATCACACTTACTGTCATG+TGG | + | chr8.4:1476099-1476118 | None:intergenic | 35.0% | |
| AAATTACACCTGAAGCTAAG+CGG | - | chr8.4:1477012-1477031 | MS.gene070713:intron | 35.0% | |
| AAATTGAAGCTGCTCTGTTA+TGG | - | chr8.4:1474966-1474985 | MS.gene070713:intron | 35.0% | |
| AAGTCAATTCAAAATGACCC+TGG | + | chr8.4:1475013-1475032 | None:intergenic | 35.0% | |
| ACAATTTCTGATTCTGAGTG+AGG | - | chr8.4:1475507-1475526 | MS.gene070713:intron | 35.0% | |
| CACATAAACATTTGATGCAG+AGG | + | chr8.4:1477142-1477161 | None:intergenic | 35.0% | |
| CAGTTATAGTCAGTACAATG+TGG | + | chr8.4:1476302-1476321 | None:intergenic | 35.0% | |
| CATTTGGTACTTCTGAATTG+AGG | + | chr8.4:1474754-1474773 | None:intergenic | 35.0% | |
| CCCCAAGCATACTAAAAATA+AGG | + | chr8.4:1475942-1475961 | None:intergenic | 35.0% | |
| CCTCCTTTCCTTGAAAAAAT+TGG | - | chr8.4:1477700-1477719 | MS.gene070713:intron | 35.0% | |
| CTCTGCATCAAATGTTTATG+TGG | - | chr8.4:1477140-1477159 | MS.gene070713:intron | 35.0% | |
| CTGTTGTACCCTAAAACTTT+AGG | - | chr8.4:1476936-1476955 | MS.gene070713:intron | 35.0% | |
| GAAAACTCAAGTCTAGACAT+AGG | + | chr8.4:1475602-1475621 | None:intergenic | 35.0% | |
| TCAACTATCCACTTGACAAT+GGG | - | chr8.4:1476148-1476167 | MS.gene070713:intron | 35.0% | |
| TCATGAATGTCAAACCATGA+AGG | + | chr8.4:1475770-1475789 | None:intergenic | 35.0% | |
| TGACAAAACAGTATTGTTCG+AGG | - | chr8.4:1477663-1477682 | MS.gene070713:intron | 35.0% | |
| TGATAAGTGTAATCGTTCCA+AGG | + | chr8.4:1477395-1477414 | None:intergenic | 35.0% | |
| TGATATGGACAGAATTGTAG+GGG | + | chr8.4:1477788-1477807 | None:intergenic | 35.0% | |
| TGGTATTATTAGGCTTATCC+TGG | - | chr8.4:1477819-1477838 | MS.gene070713:CDS | 35.0% | |
| TGTATACCGATGACAACAAT+AGG | + | chr8.4:1477367-1477386 | None:intergenic | 35.0% | |
| TGTTCATGCTACAATAGACA+AGG | - | chr8.4:1476751-1476770 | MS.gene070713:intron | 35.0% | |
| TTATACAGACACCCATACTA+TGG | - | chr8.4:1477626-1477645 | MS.gene070713:intron | 35.0% | |
| TTCAACTATCCACTTGACAA+TGG | - | chr8.4:1476147-1476166 | MS.gene070713:intron | 35.0% | |
| TTGAACTGGAATGCTTTACT+TGG | + | chr8.4:1477320-1477339 | None:intergenic | 35.0% | |
| TTGTACCCTAAAACTTTAGG+TGG | - | chr8.4:1476939-1476958 | MS.gene070713:intron | 35.0% | |
| ! | ACCAATAAGCACCAAAGTTT+TGG | + | chr8.4:1476456-1476475 | None:intergenic | 35.0% |
| ! | ATCACTTGAGATGCCATTTA+TGG | - | chr8.4:1475656-1475675 | MS.gene070713:intron | 35.0% |
| ! | CATTTTTCTATTAAGGACGC+GGG | + | chr8.4:1476849-1476868 | None:intergenic | 35.0% |
| ! | TAAGGTTTTCTCTATTGGGT+CGG | + | chr8.4:1477244-1477263 | None:intergenic | 35.0% |
| ! | TCACTTGAGATGCCATTTAT+GGG | - | chr8.4:1475657-1475676 | MS.gene070713:intron | 35.0% |
| ! | TGGTTTTCTTTAATCAGGGT+CGG | - | chr8.4:1477341-1477360 | MS.gene070713:intron | 35.0% |
| !! | AAATGGTGACATTGTTTTGC+AGG | - | chr8.4:1476891-1476910 | MS.gene070713:intron | 35.0% |
| !! | ACCAAAACTTTGGTGCTTAT+TGG | - | chr8.4:1476452-1476471 | MS.gene070713:intron | 35.0% |
| !! | CCATTTTTCTATTAAGGACG+CGG | + | chr8.4:1476850-1476869 | None:intergenic | 35.0% |
| !! | CTCAATTCAGAAGTACCAAA+TGG | - | chr8.4:1474752-1474771 | MS.gene070713:intron | 35.0% |
| !! | TAATGTCTTGATGGGTTCAT+TGG | + | chr8.4:1474722-1474741 | None:intergenic | 35.0% |
| !!! | AAGCACCAAAGTTTTGGTTT+AGG | + | chr8.4:1476450-1476469 | None:intergenic | 35.0% |
| !!! | AGCACCAAAGTTTTGGTTTA+GGG | + | chr8.4:1476449-1476468 | None:intergenic | 35.0% |
| !!! | AGTTTTGTTCTGTGGTTACA+CGG | - | chr8.4:1474676-1474695 | MS.gene070713:CDS | 35.0% |
| !!! | CCAATTTTTTCAAGGAAAGG+AGG | + | chr8.4:1477703-1477722 | None:intergenic | 35.0% |
| AAAACAGTATTGTTCGAGGC+AGG | - | chr8.4:1477667-1477686 | MS.gene070713:intron | 40.0% | |
| AACTCAAGTCTAGACATAGG+TGG | + | chr8.4:1475599-1475618 | None:intergenic | 40.0% | |
| AACTCATTCCCATTGTCAAG+TGG | + | chr8.4:1476159-1476178 | None:intergenic | 40.0% | |
| AATTACACCTGAAGCTAAGC+GGG | - | chr8.4:1477013-1477032 | MS.gene070713:intron | 40.0% | |
| AGCAAACTATTCTCGTCGTT+TGG | + | chr8.4:1476716-1476735 | None:intergenic | 40.0% | |
| AGCAGAAGGAAAAGACCATT+TGG | + | chr8.4:1474770-1474789 | None:intergenic | 40.0% | |
| AGTCTAGACATAGGTGGAAT+AGG | + | chr8.4:1475593-1475612 | None:intergenic | 40.0% | |
| ATGAGCAACCTGCTGATAAA+TGG | - | chr8.4:1476874-1476893 | MS.gene070713:intron | 40.0% | |
| CAATGTCACCATTTATCAGC+AGG | + | chr8.4:1476885-1476904 | None:intergenic | 40.0% | |
| CACAAGTCAAATTGCTCAAC+AGG | + | chr8.4:1476607-1476626 | None:intergenic | 40.0% | |
| CACAGCAGAAATGTGGAAAA+TGG | + | chr8.4:1475976-1475995 | None:intergenic | 40.0% | |
| CATCGGTATACAATTGTCCT+TGG | - | chr8.4:1477375-1477394 | MS.gene070713:intron | 40.0% | |
| CCGCGTCCTTAATAGAAAAA+TGG | - | chr8.4:1476847-1476866 | MS.gene070713:intron | 40.0% | |
| CCTGGATAATATTCCCAGAA+GGG | + | chr8.4:1474995-1475014 | None:intergenic | 40.0% | |
| CTCCTCGTTGTTTATTGAGT+GGG | + | chr8.4:1477850-1477869 | None:intergenic | 40.0% | |
| CTGGATAATATTCCCAGAAG+GGG | + | chr8.4:1474994-1475013 | None:intergenic | 40.0% | |
| GAAGCTGATTGCAAGCTAAT+AGG | + | chr8.4:1475686-1475705 | None:intergenic | 40.0% | |
| GCTAATAGGTTGCCCATAAA+TGG | + | chr8.4:1475672-1475691 | None:intergenic | 40.0% | |
| GTGCACCATCTATAAGAGAA+CGG | + | chr8.4:1476425-1476444 | None:intergenic | 40.0% | |
| TACCCTAAAACTTTAGGTGG+AGG | - | chr8.4:1476942-1476961 | MS.gene070713:intron | 40.0% | |
| TCAACATCATCATCCTGAAG+AGG | + | chr8.4:1476643-1476662 | None:intergenic | 40.0% | |
| TGCAAGGCTCATATCAAAAG+TGG | + | chr8.4:1477457-1477476 | None:intergenic | 40.0% | |
| TTGCACCGTTCTCTTATAGA+TGG | - | chr8.4:1476417-1476436 | MS.gene070713:intron | 40.0% | |
| TTGTACATTTATCGTGGGTG+TGG | - | chr8.4:1476118-1476137 | MS.gene070713:intron | 40.0% | |
| TTTATCTGTGGGTTCAGTCA+AGG | - | chr8.4:1476806-1476825 | MS.gene070713:intron | 40.0% | |
| ! | ACAGAGCAGCTTCAATTTTG+TGG | + | chr8.4:1474964-1474983 | None:intergenic | 40.0% |
| ! | AGCTAAAGCATCTTGAGTCT+TGG | - | chr8.4:1477868-1477887 | MS.gene070713:CDS | 40.0% |
| ! | ATGGTTCTGTAATGCCTTCA+TGG | - | chr8.4:1475753-1475772 | MS.gene070713:CDS | 40.0% |
| ! | CATTTTGCACAGCAGAAATG+TGG | + | chr8.4:1475983-1476002 | None:intergenic | 40.0% |
| ! | CCTTCTGGGAATATTATCCA+GGG | - | chr8.4:1474993-1475012 | MS.gene070713:intron | 40.0% |
| ! | CTAGACTTGAGTTTTCTGCT+TGG | - | chr8.4:1475606-1475625 | MS.gene070713:CDS | 40.0% |
| ! | GTAAAGCATTCCAGTTCAAC+TGG | - | chr8.4:1477321-1477340 | MS.gene070713:intron | 40.0% |
| ! | TGGTGTTAGTTGCGAGTTTA+AGG | - | chr8.4:1477720-1477739 | MS.gene070713:intron | 40.0% |
| ! | TGTCTGTGCCATTGTTACAT+AGG | - | chr8.4:1474904-1474923 | MS.gene070713:CDS | 40.0% |
| ! | TTTGGGTTACTAAAGGAGAC+TGG | - | chr8.4:1476059-1476078 | MS.gene070713:intron | 40.0% |
| !!! | CACCAAAGTTTTGGTTTAGG+GGG | + | chr8.4:1476447-1476466 | None:intergenic | 40.0% |
| !!! | GCACCAAAGTTTTGGTTTAG+GGG | + | chr8.4:1476448-1476467 | None:intergenic | 40.0% |
| ATAAGTACCCGCTTAGCTTC+AGG | + | chr8.4:1477023-1477042 | None:intergenic | 45.0% | |
| ATAGACAAGGAAGTAGCTGC+TGG | - | chr8.4:1476764-1476783 | MS.gene070713:intron | 45.0% | |
| ATTTATCGTGGGTGTGGACA+TGG | - | chr8.4:1476124-1476143 | MS.gene070713:intron | 45.0% | |
| CACCCCCTAAACCAAAACTT+TGG | - | chr8.4:1476442-1476461 | MS.gene070713:intron | 45.0% | |
| CAGAACACTAGCCAATGTCA+AGG | + | chr8.4:1476919-1476938 | None:intergenic | 45.0% | |
| CATACGATATGAAAGCCGCA+AGG | + | chr8.4:1475299-1475318 | None:intergenic | 45.0% | |
| CCCTGGATAATATTCCCAGA+AGG | + | chr8.4:1474996-1475015 | None:intergenic | 45.0% | |
| CTAGACATAGGTGGAATAGG+AGG | + | chr8.4:1475590-1475609 | None:intergenic | 45.0% | |
| CTTGCGGCTTTCATATCGTA+TGG | - | chr8.4:1475297-1475316 | MS.gene070713:intron | 45.0% | |
| GCAGAGGCAATCAGAGAAAA+TGG | + | chr8.4:1477126-1477145 | None:intergenic | 45.0% | |
| GCTCCTCGTTGTTTATTGAG+TGG | + | chr8.4:1477851-1477870 | None:intergenic | 45.0% | |
| TGCCCACTCAATAAACAACG+AGG | - | chr8.4:1477845-1477864 | MS.gene070713:CDS | 45.0% | |
| TGTAACAATGGCACAGACAC+CGG | + | chr8.4:1474903-1474922 | None:intergenic | 45.0% | |
| TTTATTGAGTGGGCAAGACC+AGG | + | chr8.4:1477840-1477859 | None:intergenic | 45.0% | |
| ! | CCCTTCTGGGAATATTATCC+AGG | - | chr8.4:1474992-1475011 | MS.gene070713:intron | 45.0% |
| ! | CGCCTCCACCTAAAGTTTTA+GGG | + | chr8.4:1476947-1476966 | None:intergenic | 45.0% |
| ! | GTCGGTGTACTTTTGATGGA+TGG | + | chr8.4:1477226-1477245 | None:intergenic | 45.0% |
| ! | TTGGGTCGGTGTACTTTTGA+TGG | + | chr8.4:1477230-1477249 | None:intergenic | 45.0% |
| ! | TTTTGCAGGTGCCTTGACAT+TGG | - | chr8.4:1476905-1476924 | MS.gene070713:intron | 45.0% |
| ACAAAACTTCGAGCCGCCAT+TGG | + | chr8.4:1474664-1474683 | None:intergenic | 50.0% | |
| ACACCCATACTATGGTCCCA+TGG | - | chr8.4:1477634-1477653 | MS.gene070713:intron | 50.0% | |
| AGCATGTGTGTAACGCGCTA+AGG | + | chr8.4:1475461-1475480 | None:intergenic | 50.0% | |
| AGCCCATGGGACCATAGTAT+GGG | + | chr8.4:1477640-1477659 | None:intergenic | 50.0% | |
| ATCTGTGGGTTCAGTCAAGG+AGG | - | chr8.4:1476809-1476828 | MS.gene070713:intron | 50.0% | |
| CACCCATACTATGGTCCCAT+GGG | - | chr8.4:1477635-1477654 | MS.gene070713:intron | 50.0% | |
| CTGATTCTGAGTGAGGTCCT+TGG | - | chr8.4:1475514-1475533 | MS.gene070713:intron | 50.0% | |
| GCTAGACTTACAGCAGTCAC+AGG | + | chr8.4:1475797-1475816 | None:intergenic | 50.0% | |
| GGTCGGCCTATTGTTGTCAT+CGG | - | chr8.4:1477358-1477377 | MS.gene070713:intron | 50.0% | |
| GGTTACTAAAGGAGACTGGC+AGG | - | chr8.4:1476063-1476082 | MS.gene070713:intron | 50.0% | |
| GTTCTGTGGTTACACGGTCT+TGG | - | chr8.4:1474682-1474701 | MS.gene070713:CDS | 50.0% | |
| TCTGTTATGGCTCCCCTTCT+GGG | - | chr8.4:1474979-1474998 | MS.gene070713:intron | 50.0% | |
| TGCATACAGTTGCAGGTGAC+CGG | + | chr8.4:1474802-1474821 | None:intergenic | 50.0% | |
| TGTGTGTAACGCGCTAAGGA+CGG | + | chr8.4:1475457-1475476 | None:intergenic | 50.0% | |
| ! | GCGCCTCCACCTAAAGTTTT+AGG | + | chr8.4:1476948-1476967 | None:intergenic | 50.0% |
| ! | TGAGTGAGGTCCTTGGTAGT+TGG | - | chr8.4:1475521-1475540 | MS.gene070713:intron | 50.0% |
| ! | TGTTTTGTCAGCCAGCCCAT+GGG | + | chr8.4:1477653-1477672 | None:intergenic | 50.0% |
| ! | TTACACGGTCTTGGTGACTC+TGG | - | chr8.4:1474691-1474710 | MS.gene070713:CDS | 50.0% |
| !! | AGGCGCTGTTTTCAGTGGTT+GGG | - | chr8.4:1476962-1476981 | MS.gene070713:intron | 50.0% |
| !! | GTCTTGATGGGTTCATTGGC+AGG | + | chr8.4:1474718-1474737 | None:intergenic | 50.0% |
| !!! | CGGCTCGAAGTTTTGTTCTG+TGG | - | chr8.4:1474668-1474687 | MS.gene070713:CDS | 50.0% |
| CAGCCCATGGGACCATAGTA+TGG | + | chr8.4:1477641-1477660 | None:intergenic | 55.0% | |
| CATACTATGGTCCCATGGGC+TGG | - | chr8.4:1477639-1477658 | MS.gene070713:intron | 55.0% | |
| CTCTGTTATGGCTCCCCTTC+TGG | - | chr8.4:1474978-1474997 | MS.gene070713:intron | 55.0% | |
| GATGCTGAGCTTCTCGTGTC+CGG | - | chr8.4:1474881-1474900 | MS.gene070713:CDS | 55.0% | |
| GCGCGTTACACACATGCTCA+TGG | - | chr8.4:1475463-1475482 | MS.gene070713:intron | 55.0% | |
| GTGTGTAACGCGCTAAGGAC+GGG | + | chr8.4:1475456-1475475 | None:intergenic | 55.0% | |
| ! | CTGTTTTGTCAGCCAGCCCA+TGG | + | chr8.4:1477654-1477673 | None:intergenic | 55.0% |
| !!! | GAGGCGCTGTTTTCAGTGGT+TGG | - | chr8.4:1476961-1476980 | MS.gene070713:intron | 55.0% |
| AAGGACGGGTCTGGTGGAAC+TGG | + | chr8.4:1475442-1475461 | None:intergenic | 60.0% | |
| TAACGCGCTAAGGACGGGTC+TGG | + | chr8.4:1475451-1475470 | None:intergenic | 60.0% | |
| TCCTTCTGCTCCTCACGCTC+CGG | - | chr8.4:1474780-1474799 | MS.gene070713:intron | 60.0% | |
| !!! | GGTGGAGGCGCTGTTTTCAG+TGG | - | chr8.4:1476957-1476976 | MS.gene070713:intron | 60.0% |
| ACCGGAGCGTGAGGAGCAGA+AGG | + | chr8.4:1474784-1474803 | None:intergenic | 65.0% | |
| TTGCAGGTGACCGGAGCGTG+AGG | + | chr8.4:1474793-1474812 | None:intergenic | 65.0% | |
| CGCGCTAAGGACGGGTCTGG+TGG | + | chr8.4:1475448-1475467 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1474650 | 1477920 | 1474650 | ID=MS.gene070713 |
| chr8.4 | mRNA | 1474650 | 1477920 | 1474650 | ID=MS.gene070713.t1;Parent=MS.gene070713 |
| chr8.4 | exon | 1477756 | 1477920 | 1477756 | ID=MS.gene070713.t1.exon1;Parent=MS.gene070713.t1 |
| chr8.4 | CDS | 1477756 | 1477920 | 1477756 | ID=cds.MS.gene070713.t1;Parent=MS.gene070713.t1 |
| chr8.4 | exon | 1476765 | 1476817 | 1476765 | ID=MS.gene070713.t1.exon2;Parent=MS.gene070713.t1 |
| chr8.4 | CDS | 1476765 | 1476817 | 1476765 | ID=cds.MS.gene070713.t1;Parent=MS.gene070713.t1 |
| chr8.4 | exon | 1475740 | 1475863 | 1475740 | ID=MS.gene070713.t1.exon3;Parent=MS.gene070713.t1 |
| chr8.4 | CDS | 1475740 | 1475863 | 1475740 | ID=cds.MS.gene070713.t1;Parent=MS.gene070713.t1 |
| chr8.4 | exon | 1475536 | 1475657 | 1475536 | ID=MS.gene070713.t1.exon4;Parent=MS.gene070713.t1 |
| chr8.4 | CDS | 1475536 | 1475657 | 1475536 | ID=cds.MS.gene070713.t1;Parent=MS.gene070713.t1 |
| chr8.4 | exon | 1474829 | 1474936 | 1474829 | ID=MS.gene070713.t1.exon5;Parent=MS.gene070713.t1 |
| chr8.4 | CDS | 1474829 | 1474936 | 1474829 | ID=cds.MS.gene070713.t1;Parent=MS.gene070713.t1 |
| chr8.4 | exon | 1474650 | 1474739 | 1474650 | ID=MS.gene070713.t1.exon6;Parent=MS.gene070713.t1 |
| chr8.4 | CDS | 1474650 | 1474739 | 1474650 | ID=cds.MS.gene070713.t1;Parent=MS.gene070713.t1 |
| Gene Sequence |
| Protein sequence |
