Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074435.t1 | XP_003627322.1 | 99 | 614 | 4 | 1 | 1 | 612 | 1 | 614 | 5.50E-247 | 863.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074435.t1 | Q8L7S4 | 74.5 | 639 | 131 | 11 | 1 | 612 | 1 | 634 | 1.6e-170 | 600.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074435.t1 | G7L7L2 | 99.0 | 614 | 4 | 1 | 1 | 612 | 1 | 614 | 4.0e-247 | 863.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene074435 | 0.874683 | 5.58E-68 | -1.69E-46 |
| MS.gene049159 | MS.gene074435 | 0.806749 | 7.07E-50 | -1.69E-46 |
| MS.gene049178 | MS.gene074435 | 0.803851 | 2.86E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene074435 | 0.819914 | 9.04E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene074435 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene074435 | 0.82624 | 3.02E-54 | -1.69E-46 |
| MS.gene04984 | MS.gene074435 | 0.806542 | 7.82E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene074435 | 0.897954 | 8.52E-77 | -1.69E-46 |
| MS.gene050437 | MS.gene074435 | 0.802856 | 4.60E-49 | -1.69E-46 |
| MS.gene050439 | MS.gene074435 | 0.818294 | 2.11E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene074435 | 0.81456 | 1.45E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene074435 | 0.840191 | 1.01E-57 | -1.69E-46 |
| MS.gene050735 | MS.gene074435 | 0.804677 | 1.93E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene074435 | 0.812282 | 4.59E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene074435 | 0.807788 | 4.26E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene074435 | 0.86986 | 2.26E-66 | -1.69E-46 |
| MS.gene051003 | MS.gene074435 | 0.822152 | 2.76E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene074435 | 0.806326 | 8.68E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene074435 | 0.866127 | 3.58E-65 | -1.69E-46 |
| MS.gene051234 | MS.gene074435 | 0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene074435 | 0.824988 | 5.99E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene074435 | 0.836515 | 8.95E-57 | -1.69E-46 |
| MS.gene051381 | MS.gene074435 | 0.840188 | 1.01E-57 | -1.69E-46 |
| MS.gene051382 | MS.gene074435 | 0.805685 | 1.18E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene074435 | 0.806493 | 8.01E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene074435 | 0.815994 | 6.95E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene074435 | 0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene074435 | 0.838168 | 3.38E-57 | -1.69E-46 |
| MS.gene051748 | MS.gene074435 | 0.840042 | 1.10E-57 | -1.69E-46 |
| MS.gene051757 | MS.gene074435 | 0.819905 | 9.09E-53 | -1.69E-46 |
| MS.gene051850 | MS.gene074435 | 0.809753 | 1.62E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene074435 | 0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene074435 | 0.843147 | 1.68E-58 | -1.69E-46 |
| MS.gene052307 | MS.gene074435 | 0.819948 | 8.88E-53 | -1.69E-46 |
| MS.gene052335 | MS.gene074435 | 0.823686 | 1.21E-53 | -1.69E-46 |
| MS.gene052397 | MS.gene074435 | 0.837906 | 3.94E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene074435 | 0.846122 | 2.65E-59 | -1.69E-46 |
| MS.gene052609 | MS.gene074435 | 0.83413 | 3.58E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene074435 | 0.844651 | 6.62E-59 | -1.69E-46 |
| MS.gene052732 | MS.gene074435 | 0.853584 | 2.17E-61 | -1.69E-46 |
| MS.gene052856 | MS.gene074435 | 0.808562 | 2.91E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene074435 | 0.828389 | 9.24E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene074435 | 0.828831 | 7.22E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene074435 | 0.811554 | 6.61E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene074435 | 0.856204 | 3.77E-62 | -1.69E-46 |
| MS.gene053581 | MS.gene074435 | 0.851359 | 9.34E-61 | -1.69E-46 |
| MS.gene054584 | MS.gene074435 | 0.835724 | 1.42E-56 | -1.69E-46 |
| MS.gene05462 | MS.gene074435 | 0.814187 | 1.75E-51 | -1.69E-46 |
| MS.gene054823 | MS.gene074435 | 0.801207 | 1.00E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene074435 | 0.815108 | 1.09E-51 | -1.69E-46 |
| MS.gene055313 | MS.gene074435 | 0.823405 | 1.41E-53 | -1.69E-46 |
| MS.gene055424 | MS.gene074435 | 0.813678 | 2.27E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene074435 | 0.868103 | 8.37E-66 | -1.69E-46 |
| MS.gene055466 | MS.gene074435 | 0.847313 | 1.25E-59 | -1.69E-46 |
| MS.gene055467 | MS.gene074435 | 0.800022 | 1.75E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene074435 | 0.866606 | 2.52E-65 | -1.69E-46 |
| MS.gene055469 | MS.gene074435 | 0.871091 | 8.90E-67 | -1.69E-46 |
| MS.gene055512 | MS.gene074435 | 0.818905 | 1.54E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene074435 | 0.832283 | 1.03E-55 | -1.69E-46 |
| MS.gene055537 | MS.gene074435 | 0.800538 | 1.38E-48 | -1.69E-46 |
| MS.gene055580 | MS.gene074435 | -0.843154 | 1.67E-58 | -1.69E-46 |
| MS.gene055891 | MS.gene074435 | 0.823224 | 1.55E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene074435 | -0.857353 | 1.73E-62 | -1.69E-46 |
| MS.gene056181 | MS.gene074435 | 0.828912 | 6.90E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene074435 | 0.835599 | 1.53E-56 | -1.69E-46 |
| MS.gene056432 | MS.gene074435 | 0.854788 | 9.75E-62 | -1.69E-46 |
| MS.gene056553 | MS.gene074435 | 0.807621 | 4.62E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene074435 | 0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene074435 | 0.835472 | 1.65E-56 | -1.69E-46 |
| MS.gene057094 | MS.gene074435 | 0.802338 | 5.88E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene074435 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene074435 | 0.817602 | 3.03E-52 | -1.69E-46 |
| MS.gene057360 | MS.gene074435 | 0.808099 | 3.66E-50 | -1.69E-46 |
| MS.gene057446 | MS.gene074435 | 0.820403 | 6.99E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene074435 | 0.818898 | 1.54E-52 | -1.69E-46 |
| MS.gene058054 | MS.gene074435 | 0.809395 | 1.93E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene074435 | 0.820263 | 7.52E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene074435 | 0.809957 | 1.46E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene074435 | 0.809442 | 1.89E-50 | -1.69E-46 |
| MS.gene05809 | MS.gene074435 | 0.815101 | 1.10E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene074435 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene074435 | 0.813982 | 1.94E-51 | -1.69E-46 |
| MS.gene058646 | MS.gene074435 | 0.825454 | 4.65E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene074435 | 0.811464 | 6.91E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene074435 | 0.806535 | 7.85E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene074435 | 0.861374 | 1.07E-63 | -1.69E-46 |
| MS.gene058906 | MS.gene074435 | 0.863126 | 3.11E-64 | -1.69E-46 |
| MS.gene058945 | MS.gene074435 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene074435 | 0.874752 | 5.28E-68 | -1.69E-46 |
| MS.gene059227 | MS.gene074435 | 0.816346 | 5.80E-52 | -1.69E-46 |
| MS.gene059713 | MS.gene074435 | 0.837838 | 4.10E-57 | -1.69E-46 |
| MS.gene059725 | MS.gene074435 | 0.834231 | 3.38E-56 | -1.69E-46 |
| MS.gene05978 | MS.gene074435 | 0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene074435 | 0.824083 | 9.78E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene074435 | 0.835127 | 2.01E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene074435 | 0.809719 | 1.65E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene074435 | 0.811229 | 7.77E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene074435 | 0.858147 | 1.01E-62 | -1.69E-46 |
| MS.gene061100 | MS.gene074435 | 0.823425 | 1.39E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074435.t1 | MTR_8g021120 | 99.186 | 614 | 3 | 1 | 1 | 612 | 1 | 614 | 0.0 | 1223 |
| MS.gene074435.t1 | MTR_1g032520 | 87.967 | 615 | 67 | 4 | 1 | 612 | 1 | 611 | 0.0 | 1026 |
| MS.gene074435.t1 | MTR_8g105350 | 83.333 | 618 | 95 | 5 | 1 | 612 | 1 | 616 | 0.0 | 1003 |
| MS.gene074435.t1 | MTR_4g133890 | 49.907 | 535 | 241 | 10 | 52 | 567 | 17 | 543 | 2.62e-150 | 445 |
| MS.gene074435.t1 | MTR_2g026590 | 48.998 | 549 | 244 | 9 | 53 | 581 | 13 | 545 | 4.10e-150 | 444 |
| MS.gene074435.t1 | MTR_4g133890 | 49.907 | 535 | 241 | 10 | 52 | 567 | 25 | 551 | 6.61e-150 | 445 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074435.t1 | AT1G24764 | 75.587 | 639 | 124 | 11 | 1 | 612 | 1 | 634 | 0.0 | 902 |
| MS.gene074435.t1 | AT1G24764 | 75.587 | 639 | 124 | 11 | 1 | 612 | 60 | 693 | 0.0 | 900 |
| MS.gene074435.t1 | AT1G68060 | 75.671 | 633 | 122 | 12 | 1 | 612 | 1 | 622 | 0.0 | 898 |
| MS.gene074435.t1 | AT1G14840 | 73.849 | 608 | 133 | 11 | 17 | 612 | 11 | 604 | 0.0 | 828 |
| MS.gene074435.t1 | AT2G01750 | 74.746 | 590 | 133 | 8 | 29 | 612 | 50 | 629 | 0.0 | 825 |
| MS.gene074435.t1 | AT2G01750 | 74.619 | 591 | 133 | 9 | 29 | 612 | 50 | 630 | 0.0 | 820 |
| MS.gene074435.t1 | AT1G14840 | 71.546 | 608 | 132 | 12 | 17 | 612 | 11 | 589 | 0.0 | 786 |
| MS.gene074435.t1 | AT1G24764 | 79.424 | 486 | 89 | 7 | 133 | 612 | 1 | 481 | 0.0 | 748 |
| MS.gene074435.t1 | AT4G17220 | 46.852 | 540 | 248 | 10 | 53 | 588 | 6 | 510 | 4.59e-135 | 404 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTAGTGCCGCTTCTT+TGG | 0.223340 | 8.2:+73902226 | None:intergenic |
| AGAGAGAAACAGATGTTAAT+TGG | 0.235223 | 8.2:-73900980 | MS.gene074435:CDS |
| TCATCCATGGCGGATGTTTC+CGG | 0.236748 | 8.2:-73906887 | None:intergenic |
| TTCTCAAAACCAACCTCTAA+TGG | 0.241419 | 8.2:-73901191 | MS.gene074435:CDS |
| TTCTAGCTCCCTTACAGTTT+GGG | 0.252166 | 8.2:+73901950 | None:intergenic |
| TGATTCTGAGCACTGTTTAC+AGG | 0.265068 | 8.2:+73900545 | None:intergenic |
| AACATCTGTTTCTCTCTCTT+TGG | 0.269005 | 8.2:+73900986 | None:intergenic |
| CTTCTAGCTCCCTTACAGTT+TGG | 0.274253 | 8.2:+73901949 | None:intergenic |
| GCTCAGAATCAGCTAATTTC+TGG | 0.278957 | 8.2:-73900533 | MS.gene074435:CDS |
| AGAAGCAATTCTTGCTCCTT+TGG | 0.279703 | 8.2:-73902447 | MS.gene074435:CDS |
| CTAGAAGAGGCTGTCCTTGC+AGG | 0.291437 | 8.2:-73901933 | MS.gene074435:CDS |
| CCGGCGCCGCTTTCAGTTCC+CGG | 0.295615 | 8.2:-73906842 | MS.gene074435:CDS |
| GGAGCAAGAATTGCTTCTAT+TGG | 0.301222 | 8.2:+73902452 | None:intergenic |
| TGCCTCAACTTCCATGGCTT+TGG | 0.302400 | 8.2:+73900679 | None:intergenic |
| GGTTACCATCCTTTCAATTA+AGG | 0.302608 | 8.2:-73901154 | MS.gene074435:CDS |
| CTCCGCGAGGCAACCGAGTA+TGG | 0.302776 | 8.2:-73906783 | MS.gene074435:CDS |
| ATAATAAACTTGATGTTATT+GGG | 0.314561 | 8.2:+73899665 | None:intergenic |
| GGATTTGGTAAGACGGTCTA+AGG | 0.317342 | 8.2:+73902247 | None:intergenic |
| CAGTGAAGGTTGAGCTTAAT+CGG | 0.325939 | 8.2:-73906721 | MS.gene074435:CDS |
| TAGTGCCGCTTCTTTGGATT+TGG | 0.336670 | 8.2:+73902232 | None:intergenic |
| GAGCAAGAATTGCTTCTATT+GGG | 0.338217 | 8.2:+73902453 | None:intergenic |
| CTTTGGTTTCTTCAAGAGAT+TGG | 0.352553 | 8.2:+73901003 | None:intergenic |
| AAAGCGGTTCAGCAATATAA+AGG | 0.353628 | 8.2:-73900576 | MS.gene074435:CDS |
| TGAAGAACGTCGATTCTTGC+AGG | 0.357777 | 8.2:-73901614 | MS.gene074435:intron |
| TCAGGAAGAAAATAAAATAT+TGG | 0.359694 | 8.2:-73902015 | MS.gene074435:intron |
| TCTCAAAACCAACCTCTAAT+GGG | 0.370707 | 8.2:-73901190 | MS.gene074435:CDS |
| TTGGTTAAACGAATAACTTT+GGG | 0.372655 | 8.2:+73901022 | None:intergenic |
| TGTTCAGGTTGCCTTGGTTA+AGG | 0.376565 | 8.2:-73902192 | MS.gene074435:CDS |
| ATTGGTTAAACGAATAACTT+TGG | 0.382076 | 8.2:+73901021 | None:intergenic |
| GATACAGAGGATAGTGTTCC+AGG | 0.384107 | 8.2:-73900915 | MS.gene074435:CDS |
| TCACGAAAAGCTCTTCTTCT+CGG | 0.387832 | 8.2:-73906814 | MS.gene074435:CDS |
| AAAAGATTTAGATGTTCCTT+TGG | 0.396460 | 8.2:+73901097 | None:intergenic |
| CTTCTTTGCCTCAACTTCCA+TGG | 0.400320 | 8.2:+73900673 | None:intergenic |
| AAGTACTAGAGGAGAGTTTG+AGG | 0.414680 | 8.2:-73901301 | MS.gene074435:CDS |
| CATGAATCTGTTGCACGGTT+CGG | 0.424974 | 8.2:-73906747 | MS.gene074435:CDS |
| CACCGTAGCTACTCTATTTG+CGG | 0.426008 | 8.2:+73901693 | None:intergenic |
| TTCCGGCGACGGAGCTGAAA+TGG | 0.428527 | 8.2:-73906870 | MS.gene074435:CDS |
| TGAGCACTGTTTACAGGGCC+AGG | 0.429111 | 8.2:+73900551 | None:intergenic |
| TGAAGCCGAAAAGACTGTTC+AGG | 0.438906 | 8.2:-73902207 | MS.gene074435:CDS |
| GAAAGGAAATTCAGATGATA+AGG | 0.438934 | 8.2:-73900958 | MS.gene074435:CDS |
| TTGCTTACACTTCTTCCCTC+AGG | 0.450125 | 8.2:+73901248 | None:intergenic |
| CGGAGCTGAAATGGCGACGC+CGG | 0.450733 | 8.2:-73906861 | MS.gene074435:CDS |
| CTGTCAGATGTTAGCAAAGA+AGG | 0.450927 | 8.2:-73900714 | MS.gene074435:intron |
| TGCTTACACTTCTTCCCTCA+GGG | 0.455039 | 8.2:+73901249 | None:intergenic |
| AAAAGCTCACCCAAACTGTA+AGG | 0.456426 | 8.2:-73901959 | MS.gene074435:CDS |
| AGTACTAGAGGAGAGTTTGA+GGG | 0.460626 | 8.2:-73901300 | MS.gene074435:CDS |
| TTCAATACTGAGCTAGAAGA+TGG | 0.461459 | 8.2:+73901125 | None:intergenic |
| TCTTCAAGCCATTGTTTGAC+AGG | 0.463739 | 8.2:+73901631 | None:intergenic |
| TACTCTATTTGCGGTTACCT+TGG | 0.466980 | 8.2:+73901702 | None:intergenic |
| CGCCATTTCAGCTCCGTCGC+CGG | 0.470645 | 8.2:+73906868 | None:intergenic |
| TTGAGGCAAAGAAGATGAGA+AGG | 0.474623 | 8.2:-73900664 | MS.gene074435:CDS |
| ATATGATCTCCTGCAGAAAG+AGG | 0.478732 | 8.2:-73900886 | MS.gene074435:CDS |
| TGCCTTGGTTAAGGCCTCCA+TGG | 0.478833 | 8.2:-73902183 | MS.gene074435:CDS |
| CTACGGTGGTTGCAAATGAA+TGG | 0.479682 | 8.2:-73901678 | MS.gene074435:CDS |
| AGCAATTCTTGCTCCTTTGG+AGG | 0.480043 | 8.2:-73902444 | MS.gene074435:CDS |
| TGATGGCAAGCTAAAATTAA+CGG | 0.487466 | 8.2:-73902695 | MS.gene074435:CDS |
| CCGGGAACTGAAAGCGGCGC+CGG | 0.487898 | 8.2:+73906842 | None:intergenic |
| CGATTAAGCTCAACCTTCAC+TGG | 0.491809 | 8.2:+73906722 | None:intergenic |
| GTCATGACCTTGAGGAAAGC+TGG | 0.495312 | 8.2:-73900864 | MS.gene074435:CDS |
| CTATCCTCTGTATCCACTGT+TGG | 0.500010 | 8.2:+73900924 | None:intergenic |
| ATGGCGGATGTTTCCGGCGA+CGG | 0.500646 | 8.2:-73906881 | MS.gene074435:CDS |
| TTCATTGTGTAGATAAGGAT+AGG | 0.501590 | 8.2:-73906595 | MS.gene074435:intron |
| GAAACAGATGTTAATTGGAA+AGG | 0.502395 | 8.2:-73900975 | MS.gene074435:CDS |
| AAAGACTGTTCAGGTTGCCT+TGG | 0.505372 | 8.2:-73902198 | MS.gene074435:CDS |
| AGATAAAGACGATGCTATTG+AGG | 0.506040 | 8.2:-73900817 | MS.gene074435:intron |
| GATTCTGAGCACTGTTTACA+GGG | 0.509732 | 8.2:+73900546 | None:intergenic |
| AGGTCATGACCTCTTTCTGC+AGG | 0.510001 | 8.2:+73900877 | None:intergenic |
| GAGCACTGTTTACAGGGCCA+GGG | 0.513679 | 8.2:+73900552 | None:intergenic |
| TGAAAGGATGGTAACCGCTT+AGG | 0.519905 | 8.2:+73901161 | None:intergenic |
| GATGAACTGTCAAAGGTTGA+TGG | 0.521132 | 8.2:-73902712 | MS.gene074435:CDS |
| TGAGGCAAAGAAGATGAGAA+GGG | 0.522446 | 8.2:-73900663 | MS.gene074435:CDS |
| AATTCTCGTCGGCAATCTCT+AGG | 0.523539 | 8.2:-73901227 | MS.gene074435:CDS |
| AGGAATAAGATGCAGCTGAA+TGG | 0.524240 | 8.2:-73901050 | MS.gene074435:CDS |
| GATGACCTTAATTGAAAGGA+TGG | 0.525501 | 8.2:+73901149 | None:intergenic |
| TATTTGCGGTTACCTTGGCA+CGG | 0.525808 | 8.2:+73901707 | None:intergenic |
| AAGCGGTTCAGCAATATAAA+GGG | 0.526321 | 8.2:-73900575 | MS.gene074435:CDS |
| GGAAGTAGCCAACATGGAAA+AGG | 0.530015 | 8.2:-73900642 | MS.gene074435:CDS |
| GTACTAGAGGAGAGTTTGAG+GGG | 0.532343 | 8.2:-73901299 | MS.gene074435:CDS |
| TATCCTCTGTATCCACTGTT+GGG | 0.534369 | 8.2:+73900925 | None:intergenic |
| TCATTGTGTAGATAAGGATA+GGG | 0.537789 | 8.2:-73906594 | MS.gene074435:intron |
| TTCAGCAATATAAAGGGCCC+TGG | 0.538699 | 8.2:-73900569 | MS.gene074435:CDS |
| CTGCTGAAGCTACTCTTCGA+AGG | 0.540526 | 8.2:-73902508 | MS.gene074435:CDS |
| GAAACAGATTGAGATTTGCC+AGG | 0.542161 | 8.2:-73902126 | MS.gene074435:intron |
| AAGGGTACATGCTGCTCAGA+AGG | 0.547693 | 8.2:-73902489 | MS.gene074435:CDS |
| ATCAACCTTTGACAGTTCAT+CGG | 0.548852 | 8.2:+73902714 | None:intergenic |
| TCAATACTGAGCTAGAAGAT+GGG | 0.554005 | 8.2:+73901126 | None:intergenic |
| AACTCGTCAGCATCCATACT+CGG | 0.554301 | 8.2:+73906770 | None:intergenic |
| AGCAAGAATTGCTTCTATTG+GGG | 0.554309 | 8.2:+73902454 | None:intergenic |
| CTCATTACCAGCTTTCCTCA+AGG | 0.556470 | 8.2:+73900857 | None:intergenic |
| TCAAAAGATTACCTCTTCAA+CGG | 0.560647 | 8.2:+73906508 | None:intergenic |
| TGGGGATGACCTTAATTGAA+AGG | 0.562293 | 8.2:+73901145 | None:intergenic |
| GCATAGACTAAAGGTGGCAG+AGG | 0.565614 | 8.2:-73901985 | MS.gene074435:CDS |
| AACCAAAGCCATGGAAGTTG+AGG | 0.566163 | 8.2:-73900681 | MS.gene074435:CDS |
| GAAGAGGCTGTCCTTGCAGG+TGG | 0.569785 | 8.2:-73901930 | MS.gene074435:CDS |
| GTTAACCGATGAACTGTCAA+AGG | 0.570201 | 8.2:-73902719 | MS.gene074435:CDS |
| CTTCTTTGGATTTGGTAAGA+CGG | 0.571194 | 8.2:+73902240 | None:intergenic |
| ATTTGCGGTTACCTTGGCAC+GGG | 0.572229 | 8.2:+73901708 | None:intergenic |
| CTCGGAGACGCGGCTCCGCG+AGG | 0.572362 | 8.2:-73906796 | MS.gene074435:CDS |
| AACCGCAAATAGAGTAGCTA+CGG | 0.574969 | 8.2:-73901695 | MS.gene074435:CDS |
| GGACAGAATGCATAGACTAA+AGG | 0.576267 | 8.2:-73901994 | MS.gene074435:CDS |
| GCACGGTTCGGATCCAGTGA+AGG | 0.577059 | 8.2:-73906735 | MS.gene074435:CDS |
| TTGCAGCAGCACCACCTGCA+AGG | 0.579728 | 8.2:+73901919 | None:intergenic |
| TACTAGAGGAGAGTTTGAGG+GGG | 0.580757 | 8.2:-73901298 | MS.gene074435:CDS |
| AGATACATTAACCAAAGCCA+TGG | 0.582171 | 8.2:-73900690 | MS.gene074435:CDS |
| TCGGGAGTTGGCCCGTGCCA+AGG | 0.582971 | 8.2:-73901719 | MS.gene074435:CDS |
| AACGATCCGGGAACTGAAAG+CGG | 0.583534 | 8.2:+73906836 | None:intergenic |
| GGGGCACAAGGTCACTGGAG+AGG | 0.592071 | 8.2:-73901070 | MS.gene074435:CDS |
| TGATGAAAAGAAAGCAGCAA+TGG | 0.592211 | 8.2:-73902543 | MS.gene074435:CDS |
| AACTGTAAGGGAGCTAGAAG+AGG | 0.592925 | 8.2:-73901946 | MS.gene074435:CDS |
| CGGCTTGAGAATGAAGTTCG+AGG | 0.596884 | 8.2:-73906701 | MS.gene074435:intron |
| GAGAAGGGAAGTAGCCAACA+TGG | 0.599967 | 8.2:-73900648 | MS.gene074435:CDS |
| ACTAAAACTTGCTCGACAAG+AGG | 0.602494 | 8.2:-73902417 | MS.gene074435:intron |
| AGTAGTCGCAGCACCCCTGA+GGG | 0.604217 | 8.2:-73901263 | MS.gene074435:CDS |
| GTCGCCGGAAACATCCGCCA+TGG | 0.605558 | 8.2:+73906883 | None:intergenic |
| CAATACTGAGCTAGAAGATG+GGG | 0.606926 | 8.2:+73901127 | None:intergenic |
| TGCTGAAGCTACTCTTCGAA+GGG | 0.610610 | 8.2:-73902507 | MS.gene074435:CDS |
| CACAGAAGTGTGACACGTGG+AGG | 0.611200 | 8.2:-73899702 | MS.gene074435:intron |
| CAGAATGCATAGACTAAAGG+TGG | 0.613852 | 8.2:-73901991 | MS.gene074435:CDS |
| GCTTACACTTCTTCCCTCAG+GGG | 0.618533 | 8.2:+73901250 | None:intergenic |
| GGCAAATGACTTCCCAACAG+TGG | 0.619817 | 8.2:-73900937 | MS.gene074435:CDS |
| AAGTGATGCCTGTCAAACAA+TGG | 0.623263 | 8.2:-73901639 | MS.gene074435:CDS |
| AAAGCTCACCCAAACTGTAA+GGG | 0.623664 | 8.2:-73901958 | MS.gene074435:CDS |
| TCTTACCAAATCCAAAGAAG+CGG | 0.624399 | 8.2:-73902237 | MS.gene074435:CDS |
| CAGTAGTCGCAGCACCCCTG+AGG | 0.625018 | 8.2:-73901264 | MS.gene074435:CDS |
| AGAATCAGCTAATTTCTGGA+AGG | 0.627344 | 8.2:-73900529 | MS.gene074435:intron |
| AGGAGATCATATAAAATACC+TGG | 0.629626 | 8.2:+73900897 | None:intergenic |
| GAAGTGTAAGCAATTCTCGT+CGG | 0.633903 | 8.2:-73901238 | MS.gene074435:CDS |
| AGTACGGCTTAAAGTACTAG+AGG | 0.638308 | 8.2:-73901312 | MS.gene074435:CDS |
| TCAGTATTGAAGAATGCCAA+AGG | 0.641224 | 8.2:-73901113 | MS.gene074435:CDS |
| GCAAGAATTGCTTCTATTGG+GGG | 0.641990 | 8.2:+73902455 | None:intergenic |
| GAGTTCATGAATCTGTTGCA+CGG | 0.643279 | 8.2:-73906752 | MS.gene074435:CDS |
| AGAAAGAGGTCATGACCTTG+AGG | 0.644090 | 8.2:-73900872 | MS.gene074435:CDS |
| GGAGGTAGCTGCTATGCGTG+TGG | 0.645115 | 8.2:-73900621 | MS.gene074435:CDS |
| AGTAGCCAACATGGAAAAGG+AGG | 0.647046 | 8.2:-73900639 | MS.gene074435:CDS |
| CGCAAATAGAGTAGCTACGG+TGG | 0.650139 | 8.2:-73901692 | MS.gene074435:CDS |
| CACCATGGAGGCCTTAACCA+AGG | 0.650505 | 8.2:+73902181 | None:intergenic |
| TGGTTAAACGAATAACTTTG+GGG | 0.651422 | 8.2:+73901023 | None:intergenic |
| AGCTCTTCTTCTCGGAGACG+CGG | 0.654689 | 8.2:-73906806 | MS.gene074435:CDS |
| ATCCATACTCGGTTGCCTCG+CGG | 0.672191 | 8.2:+73906781 | None:intergenic |
| ATGCAGTTAGAGATTATCAG+AGG | 0.672316 | 8.2:-73901896 | MS.gene074435:CDS |
| CTTGGTTAAGGCCTCCATGG+TGG | 0.672391 | 8.2:-73902180 | MS.gene074435:CDS |
| TCTCGTCGGCAATCTCTAGG+TGG | 0.679714 | 8.2:-73901224 | MS.gene074435:CDS |
| CTTCCCAACAGTGGATACAG+AGG | 0.682920 | 8.2:-73900928 | MS.gene074435:CDS |
| TTGGAGATCATCCACCATGG+AGG | 0.683506 | 8.2:+73902169 | None:intergenic |
| TTCCACAGAAGTGTGACACG+TGG | 0.691881 | 8.2:-73899705 | MS.gene074435:intron |
| AACAAGAGAACAGAGCAAAG+CGG | 0.697116 | 8.2:-73900592 | MS.gene074435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 73899680 | 73906903 | 73899680 | ID=MS.gene074435 |
| chr8.2 | mRNA | 73899680 | 73906903 | 73899680 | ID=MS.gene074435.t1;Parent=MS.gene074435 |
| chr8.2 | exon | 73906702 | 73906903 | 73906702 | ID=MS.gene074435.t1.exon1;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73906702 | 73906903 | 73906702 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73906520 | 73906605 | 73906520 | ID=MS.gene074435.t1.exon2;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73906520 | 73906605 | 73906520 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73902675 | 73902740 | 73902675 | ID=MS.gene074435.t1.exon3;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73902675 | 73902740 | 73902675 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73902418 | 73902588 | 73902418 | ID=MS.gene074435.t1.exon4;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73902418 | 73902588 | 73902418 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73902127 | 73902297 | 73902127 | ID=MS.gene074435.t1.exon5;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73902127 | 73902297 | 73902127 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73901878 | 73902033 | 73901878 | ID=MS.gene074435.t1.exon6;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73901878 | 73902033 | 73901878 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73901615 | 73901761 | 73901615 | ID=MS.gene074435.t1.exon7;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73901615 | 73901761 | 73901615 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73901425 | 73901496 | 73901425 | ID=MS.gene074435.t1.exon8;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73901425 | 73901496 | 73901425 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73900818 | 73901345 | 73900818 | ID=MS.gene074435.t1.exon9;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73900818 | 73901345 | 73900818 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73900530 | 73900729 | 73900530 | ID=MS.gene074435.t1.exon10;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73900530 | 73900729 | 73900530 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| chr8.2 | exon | 73899680 | 73899719 | 73899680 | ID=MS.gene074435.t1.exon11;Parent=MS.gene074435.t1 |
| chr8.2 | CDS | 73899680 | 73899719 | 73899680 | ID=cds.MS.gene074435.t1;Parent=MS.gene074435.t1 |
| Gene Sequence |
| Protein sequence |
