Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07777.t1 | XP_003595099.1 | 97.1 | 102 | 3 | 0 | 69 | 170 | 143 | 244 | 5.90E-50 | 207.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07777.t1 | P60039 | 84.3 | 102 | 16 | 0 | 69 | 170 | 141 | 242 | 1.1e-47 | 191.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07777.t1 | A0A072VPV6 | 97.1 | 102 | 3 | 0 | 69 | 170 | 174 | 275 | 4.3e-50 | 207.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene07777 | 0.818987 | 1.47E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene07777 | 0.812071 | 5.10E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene07777 | 0.849506 | 3.10E-60 | -1.69E-46 |
| MS.gene049343 | MS.gene07777 | 0.807165 | 5.77E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene07777 | 0.813591 | 2.37E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene07777 | 0.807005 | 6.24E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene07777 | 0.835998 | 1.21E-56 | -1.69E-46 |
| MS.gene049821 | MS.gene07777 | 0.809444 | 1.89E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene07777 | 0.816729 | 4.76E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene07777 | 0.815055 | 1.12E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene07777 | 0.84111 | 5.80E-58 | -1.69E-46 |
| MS.gene049873 | MS.gene07777 | 0.828827 | 7.24E-55 | -1.69E-46 |
| MS.gene050026 | MS.gene07777 | 0.841188 | 5.53E-58 | -1.69E-46 |
| MS.gene050559 | MS.gene07777 | 0.824271 | 8.84E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene07777 | 0.821681 | 3.55E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene07777 | 0.812156 | 4.89E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene07777 | 0.804489 | 2.11E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene07777 | 0.807568 | 4.74E-50 | -1.69E-46 |
| MS.gene051181 | MS.gene07777 | 0.807277 | 5.47E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene07777 | 0.833964 | 3.94E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene07777 | 0.827735 | 1.33E-54 | -1.69E-46 |
| MS.gene051594 | MS.gene07777 | 0.835073 | 2.07E-56 | -1.69E-46 |
| MS.gene051700 | MS.gene07777 | 0.802882 | 4.54E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene07777 | 0.859177 | 4.95E-63 | -1.69E-46 |
| MS.gene051720 | MS.gene07777 | 0.860895 | 1.50E-63 | -1.69E-46 |
| MS.gene051744 | MS.gene07777 | 0.853335 | 2.56E-61 | -1.69E-46 |
| MS.gene051957 | MS.gene07777 | 0.835657 | 1.48E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene07777 | 0.808476 | 3.04E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene07777 | 0.855554 | 5.84E-62 | -1.69E-46 |
| MS.gene052582 | MS.gene07777 | 0.842294 | 2.82E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene07777 | 0.845893 | 3.06E-59 | -1.69E-46 |
| MS.gene052773 | MS.gene07777 | 0.851491 | 8.57E-61 | -1.69E-46 |
| MS.gene052863 | MS.gene07777 | 0.830591 | 2.69E-55 | -1.69E-46 |
| MS.gene052867 | MS.gene07777 | 0.820059 | 8.38E-53 | -1.69E-46 |
| MS.gene053122 | MS.gene07777 | 0.820856 | 5.50E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene07777 | 0.801644 | 8.17E-49 | -1.69E-46 |
| MS.gene053145 | MS.gene07777 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene053195 | MS.gene07777 | 0.800899 | 1.16E-48 | -1.69E-46 |
| MS.gene053221 | MS.gene07777 | 0.803595 | 3.23E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene07777 | 0.872576 | 2.86E-67 | -1.69E-46 |
| MS.gene053599 | MS.gene07777 | 0.816008 | 6.90E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene07777 | 0.800412 | 1.46E-48 | -1.69E-46 |
| MS.gene053883 | MS.gene07777 | 0.825298 | 5.06E-54 | -1.69E-46 |
| MS.gene053900 | MS.gene07777 | 0.820592 | 6.32E-53 | -1.69E-46 |
| MS.gene053974 | MS.gene07777 | 0.821863 | 3.22E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene07777 | 0.824554 | 7.58E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene07777 | 0.820674 | 6.05E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene07777 | 0.843075 | 1.75E-58 | -1.69E-46 |
| MS.gene054584 | MS.gene07777 | 0.801221 | 9.97E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene07777 | 0.830867 | 2.31E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene07777 | 0.869921 | 2.16E-66 | -1.69E-46 |
| MS.gene054775 | MS.gene07777 | 0.843188 | 1.63E-58 | -1.69E-46 |
| MS.gene054991 | MS.gene07777 | 0.833136 | 6.34E-56 | -1.69E-46 |
| MS.gene055228 | MS.gene07777 | 0.817171 | 3.79E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene07777 | 0.82269 | 2.07E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene07777 | 0.845865 | 3.11E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene07777 | 0.814965 | 1.18E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene07777 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene07777 | -0.827262 | 1.72E-54 | -1.69E-46 |
| MS.gene055586 | MS.gene07777 | 0.828381 | 9.28E-55 | -1.69E-46 |
| MS.gene055589 | MS.gene07777 | 0.826643 | 2.42E-54 | -1.69E-46 |
| MS.gene055694 | MS.gene07777 | 0.832355 | 9.91E-56 | -1.69E-46 |
| MS.gene055778 | MS.gene07777 | 0.832026 | 1.20E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene07777 | 0.835212 | 1.91E-56 | -1.69E-46 |
| MS.gene056043 | MS.gene07777 | -0.800046 | 1.73E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene07777 | 0.842664 | 2.25E-58 | -1.69E-46 |
| MS.gene056173 | MS.gene07777 | 0.805468 | 1.32E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene07777 | 0.817806 | 2.72E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene07777 | 0.813098 | 3.04E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene07777 | 0.805315 | 1.42E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene07777 | 0.833495 | 5.16E-56 | -1.69E-46 |
| MS.gene056595 | MS.gene07777 | 0.816362 | 5.75E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene07777 | 0.823926 | 1.06E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene07777 | 0.812899 | 3.36E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene07777 | 0.806652 | 7.41E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene07777 | 0.810686 | 1.02E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene07777 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene07777 | 0.824289 | 8.75E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene07777 | 0.822301 | 2.55E-53 | -1.69E-46 |
| MS.gene057921 | MS.gene07777 | 0.802073 | 6.67E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene07777 | 0.802358 | 5.83E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene07777 | 0.840854 | 6.77E-58 | -1.69E-46 |
| MS.gene058625 | MS.gene07777 | 0.876005 | 1.97E-68 | -1.69E-46 |
| MS.gene058783 | MS.gene07777 | 0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene07777 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene059015 | MS.gene07777 | 0.809052 | 2.29E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene07777 | 0.802609 | 5.17E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene07777 | 0.823134 | 1.63E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene07777 | 0.873671 | 1.23E-67 | -1.69E-46 |
| MS.gene059842 | MS.gene07777 | 0.806689 | 7.28E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene07777 | 0.810104 | 1.36E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene07777 | -0.805419 | 1.35E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene07777 | 0.831837 | 1.33E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene07777 | 0.840815 | 6.93E-58 | -1.69E-46 |
| MS.gene060519 | MS.gene07777 | 0.826217 | 3.06E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene07777 | 0.829234 | 5.77E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene07777 | 0.826033 | 3.39E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene07777 | -0.816286 | 5.98E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07777.t1 | MTR_2g038250 | 97.059 | 102 | 3 | 0 | 69 | 170 | 143 | 244 | 8.23e-69 | 209 |
| MS.gene07777.t1 | MTR_1g022385 | 97.059 | 102 | 3 | 0 | 69 | 170 | 174 | 275 | 1.70e-68 | 209 |
| MS.gene07777.t1 | MTR_4g008160 | 88.235 | 102 | 12 | 0 | 69 | 170 | 142 | 243 | 2.09e-63 | 195 |
| MS.gene07777.t1 | MTR_1g022375 | 77.500 | 80 | 18 | 0 | 81 | 160 | 77 | 156 | 2.90e-40 | 133 |
| MS.gene07777.t1 | MTR_7g059170 | 54.902 | 102 | 46 | 0 | 69 | 170 | 145 | 246 | 2.37e-39 | 134 |
| MS.gene07777.t1 | MTR_1g108785 | 72.973 | 37 | 9 | 1 | 127 | 162 | 23 | 59 | 8.01e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07777.t1 | AT2G44120 | 84.314 | 102 | 16 | 0 | 69 | 170 | 141 | 242 | 2.02e-62 | 192 |
| MS.gene07777.t1 | AT2G44120 | 84.314 | 102 | 16 | 0 | 69 | 170 | 146 | 247 | 2.54e-62 | 192 |
| MS.gene07777.t1 | AT2G01250 | 85.294 | 102 | 15 | 0 | 69 | 170 | 141 | 242 | 2.96e-62 | 192 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT3G13580 | 83.333 | 102 | 17 | 0 | 69 | 170 | 143 | 244 | 2.58e-61 | 190 |
| MS.gene07777.t1 | AT1G80750 | 52.941 | 102 | 47 | 1 | 70 | 170 | 146 | 247 | 1.49e-29 | 108 |
| MS.gene07777.t1 | AT2G01250 | 72.973 | 37 | 10 | 0 | 69 | 105 | 141 | 177 | 9.94e-11 | 58.2 |
Find 38 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATTAGAAGGATGAATT+AGG | 0.270598 | 8.1:+80815034 | MS.gene07777:CDS |
| TTTCAAGCTCAAAGCTCCTT+TGG | 0.284641 | 8.1:+80814938 | MS.gene07777:CDS |
| AGTGTTCAATTGCAGGTTCT+TGG | 0.317764 | 8.1:+80814825 | MS.gene07777:intron |
| TTCAAGCTCAAAGCTCCTTT+GGG | 0.329811 | 8.1:+80814939 | MS.gene07777:CDS |
| ATACTATTGTGCTTGGGATT+TGG | 0.331008 | 8.1:+80813848 | MS.gene07777:CDS |
| TTGATCTACAAGCGCGGTTA+TGG | 0.337108 | 8.1:+80814476 | MS.gene07777:CDS |
| TCAATTCTCTAACACTCTTC+AGG | 0.373375 | 8.1:-80814457 | None:intergenic |
| CTTTGTATACTATTGTGCTT+GGG | 0.384420 | 8.1:+80813842 | MS.gene07777:CDS |
| AAGGTGGTGATGCTGGTAAC+AGG | 0.401808 | 8.1:+80814994 | MS.gene07777:CDS |
| GTGTTCAATTGCAGGTTCTT+GGG | 0.403327 | 8.1:+80814826 | MS.gene07777:intron |
| GCTTTGTATACTATTGTGCT+TGG | 0.452410 | 8.1:+80813841 | MS.gene07777:CDS |
| ACATCAATGAACTCATTAGA+AGG | 0.462677 | 8.1:+80815024 | MS.gene07777:CDS |
| GAAGCGTGAAGCTAAGCTTA+AGG | 0.464202 | 8.1:+80814417 | MS.gene07777:intron |
| AAGCGTGAAGCTAAGCTTAA+GGG | 0.467088 | 8.1:+80814418 | MS.gene07777:intron |
| AGATAACTCTATCATTGAAC+AGG | 0.482014 | 8.1:+80814529 | MS.gene07777:CDS |
| AAGATAAATCACTATGTTGA+AGG | 0.485048 | 8.1:+80814975 | MS.gene07777:CDS |
| AAAGGAGCTTTGAGCTTGAA+AGG | 0.504831 | 8.1:-80814936 | None:intergenic |
| GAGAGGCAAACAACTTCCTA+TGG | 0.504947 | 8.1:+80814913 | MS.gene07777:CDS |
| ATAAGCTAGAGCAGCAGCCA+AGG | 0.523738 | 8.1:+80813871 | MS.gene07777:CDS |
| TATGTTGAAGGTGGTGATGC+TGG | 0.533299 | 8.1:+80814987 | MS.gene07777:CDS |
| AAGCTGAGAAAGAACATGGT+TGG | 0.534698 | 8.1:+80814091 | MS.gene07777:CDS |
| TTGCAGGTTCTTGGGAAACA+TGG | 0.547799 | 8.1:+80814834 | MS.gene07777:intron |
| ATCCACGAGATCATGACTGT+TGG | 0.549865 | 8.1:+80814879 | MS.gene07777:CDS |
| GCGGTTATGGAAAGGTTGAT+AGG | 0.549876 | 8.1:+80814489 | MS.gene07777:CDS |
| CTTTGAGCTTGAAAGGCCAT+AGG | 0.568033 | 8.1:-80814929 | None:intergenic |
| AAGCTCAAAGCTCCTTTGGG+TGG | 0.570830 | 8.1:+80814942 | MS.gene07777:CDS |
| TTCTTCTTCATGCCACCCAA+AGG | 0.574976 | 8.1:-80814954 | None:intergenic |
| ATCCAACAGTCATGATCTCG+TGG | 0.585385 | 8.1:-80814881 | None:intergenic |
| CTACAAGCGCGGTTATGGAA+AGG | 0.599869 | 8.1:+80814481 | MS.gene07777:CDS |
| CGTGAAGCTAAGCTTAAGGG+TGG | 0.634387 | 8.1:+80814421 | MS.gene07777:CDS |
| ATAAATCACTATGTTGAAGG+TGG | 0.634554 | 8.1:+80814978 | MS.gene07777:CDS |
| GAGAAAGCTGAGAAAGAACA+TGG | 0.636998 | 8.1:+80814087 | MS.gene07777:CDS |
| GAGGTCAGGAGAGGCTACAG+AGG | 0.640976 | 8.1:+80814050 | MS.gene07777:intron |
| AGGTGGTGATGCTGGTAACA+GGG | 0.651466 | 8.1:+80814995 | MS.gene07777:CDS |
| GCATCTACGGAGGTCAGGAG+AGG | 0.664972 | 8.1:+80814041 | MS.gene07777:intron |
| AGAGAATTGATCTACAAGCG+CGG | 0.721136 | 8.1:+80814470 | MS.gene07777:CDS |
| TGTTGGATCTCACTTCAGAG+AGG | 0.724978 | 8.1:+80814896 | MS.gene07777:CDS |
| TGGTGATGCTGGTAACAGGG+AGG | 0.745630 | 8.1:+80814998 | MS.gene07777:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATAGAAAAATTTAAC+CGG | - | chr8.1:80814796-80814815 | None:intergenic | 15.0% |
| !!! | AATGTTTTAGAATTTTAGAA+TGG | + | chr8.1:80814355-80814374 | MS.gene07777:intron | 15.0% |
| !!! | AGTTTGAATTAACTCAATTT+TGG | + | chr8.1:80813904-80813923 | MS.gene07777:intron | 20.0% |
| !!! | TTAGAATATTTTCTTTCATG+TGG | + | chr8.1:80813930-80813949 | MS.gene07777:intron | 20.0% |
| !!! | TTCTTTCTTTGACTTATATA+TGG | + | chr8.1:80814205-80814224 | MS.gene07777:intron | 20.0% |
| !!! | TTTAGAATTTTAGAATGGTA+AGG | + | chr8.1:80814360-80814379 | MS.gene07777:intron | 20.0% |
| ! | AAGATAAATCACTATGTTGA+AGG | + | chr8.1:80814975-80814994 | MS.gene07777:CDS | 25.0% |
| ! | ACTATCATATAATAGTGACA+TGG | + | chr8.1:80814013-80814032 | MS.gene07777:intron | 25.0% |
| ! | CTTTCATATTTGTTCTTGTA+TGG | + | chr8.1:80814240-80814259 | MS.gene07777:intron | 25.0% |
| ! | GTTTATCCAATTAATAGTGA+GGG | + | chr8.1:80814312-80814331 | MS.gene07777:intron | 25.0% |
| ! | TCAAACTTAAAATACAACCT+TGG | - | chr8.1:80813891-80813910 | None:intergenic | 25.0% |
| ! | TGTTTATCCAATTAATAGTG+AGG | + | chr8.1:80814311-80814330 | MS.gene07777:intron | 25.0% |
| !! | AATATTTTCTTTCATGTGGA+AGG | + | chr8.1:80813934-80813953 | MS.gene07777:intron | 25.0% |
| !! | AATTTAAAGTACGTACTTGT+GGG | + | chr8.1:80814272-80814291 | MS.gene07777:intron | 25.0% |
| !! | TAATTTAAAGTACGTACTTG+TGG | + | chr8.1:80814271-80814290 | MS.gene07777:intron | 25.0% |
| ACATCAATGAACTCATTAGA+AGG | + | chr8.1:80815024-80815043 | MS.gene07777:CDS | 30.0% | |
| AGATAACTCTATCATTGAAC+AGG | + | chr8.1:80814529-80814548 | MS.gene07777:CDS | 30.0% | |
| AGTCAAAGAAAGAATCTCAT+TGG | - | chr8.1:80814199-80814218 | None:intergenic | 30.0% | |
| ATAAATCACTATGTTGAAGG+TGG | + | chr8.1:80814978-80814997 | MS.gene07777:CDS | 30.0% | |
| CTTTGTATACTATTGTGCTT+GGG | + | chr8.1:80813842-80813861 | MS.gene07777:CDS | 30.0% | |
| !! | GGTGCTATTATTATTGTTGA+AGG | + | chr8.1:80814762-80814781 | MS.gene07777:intron | 30.0% |
| AACAACTCACATTCTGACTT+TGG | - | chr8.1:80814667-80814686 | None:intergenic | 35.0% | |
| AATAATAGCACCACCATACA+GGG | - | chr8.1:80814754-80814773 | None:intergenic | 35.0% | |
| AATTGGGTAAAGTACAGAGT+CGG | - | chr8.1:80814642-80814661 | None:intergenic | 35.0% | |
| ACATTCTGACTTTGGCAAAT+TGG | - | chr8.1:80814659-80814678 | None:intergenic | 35.0% | |
| ATACATGCTAGCATTCTAGT+AGG | + | chr8.1:80813961-80813980 | MS.gene07777:intron | 35.0% | |
| ATACTATTGTGCTTGGGATT+TGG | + | chr8.1:80813848-80813867 | MS.gene07777:CDS | 35.0% | |
| ATCCAATTAATAGTGAGGGA+TGG | + | chr8.1:80814316-80814335 | MS.gene07777:intron | 35.0% | |
| ATTGTTGAAGGTTATGTTGC+CGG | + | chr8.1:80814774-80814793 | MS.gene07777:intron | 35.0% | |
| CATTCTGACTTTGGCAAATT+GGG | - | chr8.1:80814658-80814677 | None:intergenic | 35.0% | |
| CTGAACTGTATGACATAGAT+GGG | + | chr8.1:80814603-80814622 | MS.gene07777:intron | 35.0% | |
| GCTTTGTATACTATTGTGCT+TGG | + | chr8.1:80813841-80813860 | MS.gene07777:CDS | 35.0% | |
| GTGATAACTACATCCAATGA+GGG | - | chr8.1:80814172-80814191 | None:intergenic | 35.0% | |
| TAATAATAGCACCACCATAC+AGG | - | chr8.1:80814755-80814774 | None:intergenic | 35.0% | |
| TACCATCCCTCACTATTAAT+TGG | - | chr8.1:80814321-80814340 | None:intergenic | 35.0% | |
| TCAATTCTCTAACACTCTTC+AGG | - | chr8.1:80814460-80814479 | None:intergenic | 35.0% | |
| TCTGAACTGTATGACATAGA+TGG | + | chr8.1:80814602-80814621 | MS.gene07777:intron | 35.0% | |
| TGACATGGTTTATGCATCTA+CGG | + | chr8.1:80814028-80814047 | MS.gene07777:intron | 35.0% | |
| TGTGATAACTACATCCAATG+AGG | - | chr8.1:80814173-80814192 | None:intergenic | 35.0% | |
| !!! | CTTTGAAACATCCTTTTCCA+GGG | + | chr8.1:80814143-80814162 | MS.gene07777:intron | 35.0% |
| !!! | TCTTTGAAACATCCTTTTCC+AGG | + | chr8.1:80814142-80814161 | MS.gene07777:intron | 35.0% |
| AAGCGTGAAGCTAAGCTTAA+GGG | + | chr8.1:80814418-80814437 | MS.gene07777:intron | 40.0% | |
| AAGCTGAGAAAGAACATGGT+TGG | + | chr8.1:80814091-80814110 | MS.gene07777:CDS | 40.0% | |
| AGAGAATTGATCTACAAGCG+CGG | + | chr8.1:80814470-80814489 | MS.gene07777:CDS | 40.0% | |
| AGTGTTCAATTGCAGGTTCT+TGG | + | chr8.1:80814825-80814844 | MS.gene07777:intron | 40.0% | |
| ATAATAGCACCACCATACAG+GGG | - | chr8.1:80814753-80814772 | None:intergenic | 40.0% | |
| CTGACATAGTGTTCAATTGC+AGG | + | chr8.1:80814818-80814837 | MS.gene07777:intron | 40.0% | |
| GAGAAAGCTGAGAAAGAACA+TGG | + | chr8.1:80814087-80814106 | MS.gene07777:CDS | 40.0% | |
| GGAATACGATGATTCGCAAA+AGG | + | chr8.1:80814381-80814400 | MS.gene07777:intron | 40.0% | |
| GTGTTCAATTGCAGGTTCTT+GGG | + | chr8.1:80814826-80814845 | MS.gene07777:intron | 40.0% | |
| TGTGTGATCGAATGAAAGCA+GGG | - | chr8.1:80814574-80814593 | None:intergenic | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | + | chr8.1:80814939-80814958 | MS.gene07777:CDS | 40.0% | |
| TTTCAAGCTCAAAGCTCCTT+TGG | + | chr8.1:80814938-80814957 | MS.gene07777:CDS | 40.0% | |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | - | chr8.1:80814939-80814958 | None:intergenic | 40.0% |
| AATGAGGGATTCCCTGGAAA+AGG | - | chr8.1:80814157-80814176 | None:intergenic | 45.0% | |
| ATCCAACAGTCATGATCTCG+TGG | - | chr8.1:80814884-80814903 | None:intergenic | 45.0% | |
| ATCCACGAGATCATGACTGT+TGG | + | chr8.1:80814879-80814898 | MS.gene07777:CDS | 45.0% | |
| CATGGTTTATGCATCTACGG+AGG | + | chr8.1:80814031-80814050 | MS.gene07777:intron | 45.0% | |
| CTGTGTGATCGAATGAAAGC+AGG | - | chr8.1:80814575-80814594 | None:intergenic | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | - | chr8.1:80814932-80814951 | None:intergenic | 45.0% | |
| GAAGCGTGAAGCTAAGCTTA+AGG | + | chr8.1:80814417-80814436 | MS.gene07777:intron | 45.0% | |
| GAGAGGCAAACAACTTCCTA+TGG | + | chr8.1:80814913-80814932 | MS.gene07777:CDS | 45.0% | |
| TGTTGGATCTCACTTCAGAG+AGG | + | chr8.1:80814896-80814915 | MS.gene07777:CDS | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | - | chr8.1:80814957-80814976 | None:intergenic | 45.0% | |
| TTGATCTACAAGCGCGGTTA+TGG | + | chr8.1:80814476-80814495 | MS.gene07777:CDS | 45.0% | |
| TTGCAGGTTCTTGGGAAACA+TGG | + | chr8.1:80814834-80814853 | MS.gene07777:intron | 45.0% | |
| TTTATGCATCTACGGAGGTC+AGG | + | chr8.1:80814036-80814055 | MS.gene07777:intron | 45.0% | |
| ! | GCGGTTATGGAAAGGTTGAT+AGG | + | chr8.1:80814489-80814508 | MS.gene07777:CDS | 45.0% |
| ! | TATGTTGAAGGTGGTGATGC+TGG | + | chr8.1:80814987-80815006 | MS.gene07777:CDS | 45.0% |
| ! | TTTTCCAGGGAATCCCTCAT+TGG | + | chr8.1:80814156-80814175 | MS.gene07777:intron | 45.0% |
| AAGCTCAAAGCTCCTTTGGG+TGG | + | chr8.1:80814942-80814961 | MS.gene07777:CDS | 50.0% | |
| ACATCCAATGAGGGATTCCC+TGG | - | chr8.1:80814163-80814182 | None:intergenic | 50.0% | |
| ATAAGCTAGAGCAGCAGCCA+AGG | + | chr8.1:80813871-80813890 | MS.gene07777:CDS | 50.0% | |
| CGTGAAGCTAAGCTTAAGGG+TGG | + | chr8.1:80814421-80814440 | MS.gene07777:CDS | 50.0% | |
| CTACAAGCGCGGTTATGGAA+AGG | + | chr8.1:80814481-80814500 | MS.gene07777:CDS | 50.0% | |
| CTTGACCAATGTCCCCTGTA+TGG | + | chr8.1:80814738-80814757 | MS.gene07777:intron | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAC+AGG | + | chr8.1:80814994-80815013 | MS.gene07777:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGTAACA+GGG | + | chr8.1:80814995-80815014 | MS.gene07777:CDS | 50.0% |
| CACCACCATACAGGGGACAT+TGG | - | chr8.1:80814746-80814765 | None:intergenic | 55.0% | |
| GACCAATGTCCCCTGTATGG+TGG | + | chr8.1:80814741-80814760 | MS.gene07777:intron | 55.0% | |
| ! | TGGTGATGCTGGTAACAGGG+AGG | + | chr8.1:80814998-80815017 | MS.gene07777:CDS | 55.0% |
| GAGGTCAGGAGAGGCTACAG+AGG | + | chr8.1:80814050-80814069 | MS.gene07777:intron | 60.0% | |
| GCATCTACGGAGGTCAGGAG+AGG | + | chr8.1:80814041-80814060 | MS.gene07777:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 80813789 | 80815055 | 80813789 | ID=MS.gene07777 |
| chr8.1 | mRNA | 80813789 | 80815055 | 80813789 | ID=MS.gene07777.t1;Parent=MS.gene07777 |
| chr8.1 | exon | 80813789 | 80813892 | 80813789 | ID=MS.gene07777.t1.exon1;Parent=MS.gene07777.t1 |
| chr8.1 | CDS | 80813789 | 80813892 | 80813789 | ID=cds.MS.gene07777.t1;Parent=MS.gene07777.t1 |
| chr8.1 | exon | 80814053 | 80814115 | 80814053 | ID=MS.gene07777.t1.exon2;Parent=MS.gene07777.t1 |
| chr8.1 | CDS | 80814053 | 80814115 | 80814053 | ID=cds.MS.gene07777.t1;Parent=MS.gene07777.t1 |
| chr8.1 | exon | 80814421 | 80814550 | 80814421 | ID=MS.gene07777.t1.exon3;Parent=MS.gene07777.t1 |
| chr8.1 | CDS | 80814421 | 80814550 | 80814421 | ID=cds.MS.gene07777.t1;Parent=MS.gene07777.t1 |
| chr8.1 | exon | 80814840 | 80815055 | 80814840 | ID=MS.gene07777.t1.exon4;Parent=MS.gene07777.t1 |
| chr8.1 | CDS | 80814840 | 80815055 | 80814840 | ID=cds.MS.gene07777.t1;Parent=MS.gene07777.t1 |
| Gene Sequence |
| Protein sequence |
