Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20264.t1 | XP_003611634.1 | 97 | 266 | 8 | 0 | 1 | 266 | 1 | 266 | 5.50E-146 | 526.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20264.t1 | Q9SZU7 | 78.1 | 265 | 58 | 0 | 1 | 265 | 1 | 265 | 3.6e-122 | 439.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20264.t1 | G7K3X2 | 97.0 | 266 | 8 | 0 | 1 | 266 | 1 | 266 | 4.0e-146 | 526.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene20264 | 0.80152 | 8.66E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene20264 | 0.859704 | 3.44E-63 | -1.69E-46 |
| MS.gene049369 | MS.gene20264 | 0.837111 | 6.30E-57 | -1.69E-46 |
| MS.gene049681 | MS.gene20264 | 0.814869 | 1.24E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene20264 | 0.826939 | 2.06E-54 | -1.69E-46 |
| MS.gene050971 | MS.gene20264 | 0.869187 | 3.74E-66 | -1.69E-46 |
| MS.gene05105 | MS.gene20264 | 0.821718 | 3.48E-53 | -1.69E-46 |
| MS.gene051360 | MS.gene20264 | 0.819602 | 1.07E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene20264 | 0.803851 | 2.86E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene20264 | -0.818428 | 1.97E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene20264 | 0.824636 | 7.25E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene20264 | 0.859489 | 3.99E-63 | -1.69E-46 |
| MS.gene052253 | MS.gene20264 | 0.834408 | 3.05E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene20264 | 0.804353 | 2.25E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene20264 | 0.840418 | 8.80E-58 | -1.69E-46 |
| MS.gene052414 | MS.gene20264 | 0.805925 | 1.05E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene20264 | 0.822614 | 2.16E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene20264 | 0.849 | 4.28E-60 | -1.69E-46 |
| MS.gene053169 | MS.gene20264 | 0.806198 | 9.24E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene20264 | 0.849706 | 2.72E-60 | -1.69E-46 |
| MS.gene053209 | MS.gene20264 | 0.804764 | 1.85E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene20264 | 0.826629 | 2.44E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene20264 | 0.850142 | 2.06E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene20264 | 0.815966 | 7.05E-52 | -1.69E-46 |
| MS.gene053928 | MS.gene20264 | 0.84326 | 1.56E-58 | -1.69E-46 |
| MS.gene054010 | MS.gene20264 | 0.811736 | 6.03E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene20264 | 0.805792 | 1.12E-49 | -1.69E-46 |
| MS.gene054012 | MS.gene20264 | 0.819366 | 1.21E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene20264 | 0.816135 | 6.46E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene20264 | 0.814356 | 1.61E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene20264 | 0.821094 | 4.85E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene20264 | 0.834567 | 2.78E-56 | -1.69E-46 |
| MS.gene054556 | MS.gene20264 | 0.830665 | 2.58E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene20264 | 0.811247 | 7.70E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene20264 | 0.810079 | 1.38E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene20264 | 0.804549 | 2.05E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene20264 | 0.826303 | 2.92E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene20264 | 0.814144 | 1.79E-51 | -1.69E-46 |
| MS.gene055666 | MS.gene20264 | 0.82067 | 6.07E-53 | -1.69E-46 |
| MS.gene055741 | MS.gene20264 | 0.822394 | 2.42E-53 | -1.69E-46 |
| MS.gene055744 | MS.gene20264 | 0.830853 | 2.32E-55 | -1.69E-46 |
| MS.gene055909 | MS.gene20264 | 0.820917 | 5.32E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene20264 | 0.828812 | 7.30E-55 | -1.69E-46 |
| MS.gene056191 | MS.gene20264 | 0.809302 | 2.02E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene20264 | 0.814852 | 1.25E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene20264 | 0.825973 | 3.50E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene20264 | 0.874345 | 7.26E-68 | -1.69E-46 |
| MS.gene056723 | MS.gene20264 | 0.800132 | 1.66E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene20264 | 0.821542 | 3.82E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene20264 | 0.84368 | 1.21E-58 | -1.69E-46 |
| MS.gene057396 | MS.gene20264 | 0.835806 | 1.35E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene20264 | 0.805416 | 1.35E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene20264 | 0.803278 | 3.76E-49 | -1.69E-46 |
| MS.gene057610 | MS.gene20264 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene20264 | 0.855342 | 6.73E-62 | -1.69E-46 |
| MS.gene057823 | MS.gene20264 | 0.863539 | 2.32E-64 | -1.69E-46 |
| MS.gene057825 | MS.gene20264 | 0.804417 | 2.18E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene20264 | 0.834248 | 3.35E-56 | -1.69E-46 |
| MS.gene058365 | MS.gene20264 | 0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene20264 | 0.821828 | 3.28E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene20264 | 0.802624 | 5.14E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene20264 | 0.856188 | 3.81E-62 | -1.69E-46 |
| MS.gene058948 | MS.gene20264 | 0.824494 | 7.83E-54 | -1.69E-46 |
| MS.gene058949 | MS.gene20264 | 0.842319 | 2.78E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene20264 | 0.829503 | 4.96E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene20264 | 0.813476 | 2.51E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene20264 | 0.832736 | 7.97E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene20264 | 0.861356 | 1.09E-63 | -1.69E-46 |
| MS.gene059462 | MS.gene20264 | 0.80896 | 2.40E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene20264 | 0.859986 | 2.83E-63 | -1.69E-46 |
| MS.gene059676 | MS.gene20264 | 0.81567 | 8.21E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene20264 | 0.832113 | 1.14E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene20264 | 0.82367 | 1.22E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene20264 | 0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene20264 | 0.817534 | 3.14E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene20264 | 0.854257 | 1.39E-61 | -1.69E-46 |
| MS.gene05984 | MS.gene20264 | 0.802908 | 4.49E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene20264 | 0.81748 | 3.23E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene20264 | 0.800994 | 1.11E-48 | -1.69E-46 |
| MS.gene060569 | MS.gene20264 | 0.823498 | 1.34E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene20264 | 0.825536 | 4.44E-54 | -1.69E-46 |
| MS.gene060986 | MS.gene20264 | 0.831644 | 1.49E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene20264 | 0.829633 | 4.62E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene20264 | 0.835339 | 1.78E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene20264 | 0.810044 | 1.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20264.t1 | MTR_5g016150 | 96.992 | 266 | 8 | 0 | 1 | 266 | 1 | 266 | 0.0 | 542 |
| MS.gene20264.t1 | MTR_4g095310 | 80.000 | 265 | 53 | 0 | 1 | 265 | 1 | 265 | 1.61e-167 | 464 |
| MS.gene20264.t1 | MTR_1g018320 | 57.028 | 249 | 105 | 2 | 6 | 253 | 8 | 255 | 2.27e-107 | 312 |
| MS.gene20264.t1 | MTR_3g045440 | 39.184 | 245 | 147 | 2 | 9 | 252 | 13 | 256 | 8.32e-68 | 211 |
| MS.gene20264.t1 | MTR_6g086560 | 40.157 | 254 | 149 | 3 | 9 | 260 | 22 | 274 | 1.14e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20264.t1 | AT4G37470 | 78.113 | 265 | 58 | 0 | 1 | 265 | 1 | 265 | 4.85e-160 | 446 |
| MS.gene20264.t1 | AT3G03990 | 58.468 | 248 | 102 | 1 | 6 | 253 | 8 | 254 | 7.79e-108 | 313 |
| MS.gene20264.t1 | AT3G24420 | 42.742 | 248 | 139 | 3 | 7 | 252 | 13 | 259 | 2.55e-75 | 231 |
Find 57 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAACTTGTCATGGTTTC+CGG | 0.180279 | 5.1:+8443593 | MS.gene20264:CDS |
| CAGCGATAGCGTTGAATAAT+TGG | 0.189658 | 5.1:-8444287 | None:intergenic |
| TTATGATTTACTTGCTATTT+TGG | 0.190068 | 5.1:+8443478 | MS.gene20264:CDS |
| CGGAAACCATGACAAGTTTA+AGG | 0.259764 | 5.1:-8443592 | None:intergenic |
| CTCTCAGAATCAAAGTATTC+AGG | 0.261092 | 5.1:-8443431 | None:intergenic |
| GGCGGTTCCGGTGGTGGTTT+CGG | 0.295547 | 5.1:+8444521 | MS.gene20264:CDS |
| ATAGTTCTAGCTCATGGATT+TGG | 0.302677 | 5.1:+8443314 | MS.gene20264:CDS |
| CTCACCAGATATTGTTATTC+CGG | 0.306476 | 5.1:+8444620 | MS.gene20264:CDS |
| CGCTCCACTGGCTGTGGGTG+GGG | 0.319640 | 5.1:+8444338 | MS.gene20264:CDS |
| AATTACAAAGCATGGTGTTA+TGG | 0.329086 | 5.1:+8444312 | MS.gene20264:CDS |
| GAGAGACATTCAAGCTTAGA+AGG | 0.335053 | 5.1:+8443449 | MS.gene20264:CDS |
| TACTAATTACCTTGGTGAAC+CGG | 0.348114 | 5.1:-8443612 | None:intergenic |
| CATTCTGTTTCTGCAATGAT+TGG | 0.356191 | 5.1:+8443536 | MS.gene20264:CDS |
| ACTGGCTGTGGGTGGGGACA+TGG | 0.358536 | 5.1:+8444344 | MS.gene20264:CDS |
| TGAGAAAGATATGGCGGTTC+CGG | 0.374023 | 5.1:+8444509 | MS.gene20264:CDS |
| ATTGAATCTTGCGTATTTGT+TGG | 0.380353 | 5.1:+8443512 | MS.gene20264:CDS |
| AACACCGGAATAACAATATC+TGG | 0.403561 | 5.1:-8444624 | None:intergenic |
| TTGAACGATGTGAATTACTT+TGG | 0.403798 | 5.1:+8444240 | MS.gene20264:CDS |
| TCGCTCCACTGGCTGTGGGT+GGG | 0.418335 | 5.1:+8444337 | MS.gene20264:CDS |
| TGGATTCGCTCCACTGGCTG+TGG | 0.437225 | 5.1:+8444332 | MS.gene20264:CDS |
| CAAAATGTTTCCACACAGAT+TGG | 0.437928 | 5.1:-8443343 | None:intergenic |
| CATGGATTCAGTGGCAGTAC+AGG | 0.447432 | 5.1:+8444362 | MS.gene20264:CDS |
| TTCGCTCCACTGGCTGTGGG+TGG | 0.454426 | 5.1:+8444336 | MS.gene20264:CDS |
| AGATATGGCGGTTCCGGTGG+TGG | 0.469390 | 5.1:+8444515 | MS.gene20264:CDS |
| CGAAAATCATCAACAAGATA+AGG | 0.479354 | 5.1:-8443368 | None:intergenic |
| ATCAAAGTATTCAGGGTTAG+TGG | 0.490058 | 5.1:-8443423 | None:intergenic |
| TATACAAGCTGAGAAAGATA+TGG | 0.495978 | 5.1:+8444500 | MS.gene20264:CDS |
| GAGTATCTTCACCAACACTT+AGG | 0.503482 | 5.1:+8444543 | MS.gene20264:CDS |
| GTGTTATGGATTCGCTCCAC+TGG | 0.516025 | 5.1:+8444326 | MS.gene20264:CDS |
| TCTCAGAATCAAAGTATTCA+GGG | 0.516412 | 5.1:-8443430 | None:intergenic |
| AGGTACATAGTTCTAGCTCA+TGG | 0.516768 | 5.1:+8443308 | MS.gene20264:CDS |
| AACGATGTGAATTACTTTGG+AGG | 0.518896 | 5.1:+8444243 | MS.gene20264:CDS |
| ACAAGTTTAAGGAAAAGATC+AGG | 0.522449 | 5.1:-8443581 | None:intergenic |
| GACACTATTAGAGCTATGTC+TGG | 0.532117 | 5.1:-8444414 | None:intergenic |
| TCGCTGAAAATTACAAAGCA+TGG | 0.559131 | 5.1:+8444304 | MS.gene20264:CDS |
| TGTTGTTCTATATGATAACA+TGG | 0.566458 | 5.1:+8443391 | MS.gene20264:CDS |
| GGATTCGCTCCACTGGCTGT+GGG | 0.566939 | 5.1:+8444333 | MS.gene20264:CDS |
| ATGTCCCCACCCACAGCCAG+TGG | 0.567376 | 5.1:-8444342 | None:intergenic |
| CTATATGATAACATGGGTGC+TGG | 0.576349 | 5.1:+8443398 | MS.gene20264:CDS |
| GTCGAACATTGTTCAACATG+AGG | 0.582241 | 5.1:+8444391 | MS.gene20264:CDS |
| AGGTGGTCAGTCCATTGTTG+AGG | 0.589895 | 5.1:+8444563 | MS.gene20264:CDS |
| GAAAGATATGGCGGTTCCGG+TGG | 0.592732 | 5.1:+8444512 | MS.gene20264:CDS |
| TGAATGTGTTTAAGCAACAC+CGG | 0.601873 | 5.1:-8444639 | None:intergenic |
| GGGTGGGGACATGGATTCAG+TGG | 0.603042 | 5.1:+8444353 | MS.gene20264:CDS |
| TATCTTCACCAACACTTAGG+TGG | 0.616011 | 5.1:+8444546 | MS.gene20264:CDS |
| AGTCTGCATGACCTCAACAA+TGG | 0.633137 | 5.1:-8444574 | None:intergenic |
| TATGACAAGGCACAGTAACA+AGG | 0.637592 | 5.1:-8444476 | None:intergenic |
| GTTGAGGTCATGCAGACTGA+TGG | 0.648337 | 5.1:+8444579 | MS.gene20264:CDS |
| AGATACTCCGAAACCACCAC+CGG | 0.658384 | 5.1:-8444528 | None:intergenic |
| ACATAGCTCTAATAGTGTCA+CGG | 0.660027 | 5.1:+8444418 | MS.gene20264:CDS |
| TCATGGTTTCCGGTTCACCA+AGG | 0.661388 | 5.1:+8443603 | MS.gene20264:CDS |
| ACAAGCTGAGAAAGATATGG+CGG | 0.694733 | 5.1:+8444503 | MS.gene20264:CDS |
| TCAGCTTGTATAATATGACA+AGG | 0.695896 | 5.1:-8444489 | None:intergenic |
| TGGACTGACCACCTAAGTGT+TGG | 0.706295 | 5.1:-8444554 | None:intergenic |
| TTGGAACAGACCAATCTGTG+TGG | 0.709650 | 5.1:+8443333 | MS.gene20264:CDS |
| GTTGTTCTATATGATAACAT+GGG | 0.717956 | 5.1:+8443392 | MS.gene20264:CDS |
| ATATCTGGTGAGCTTAACTG+CGG | 0.718673 | 5.1:-8444609 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGTAACATTGTTTAA+TGG | + | chr5.1:8443661-8443680 | MS.gene20264:intron | 15.0% |
| !! | AATATGAAATTTGATATAGT+TGG | + | chr5.1:8444051-8444070 | MS.gene20264:intron | 15.0% |
| !! | AAATAATCAAGAGAAATGTA+AGG | - | chr5.1:8443871-8443890 | None:intergenic | 20.0% |
| !! | AATAATCAAGAGAAATGTAA+GGG | - | chr5.1:8443870-8443889 | None:intergenic | 20.0% |
| !! | ATAAAACTTACTAATTACCT+TGG | - | chr5.1:8443623-8443642 | None:intergenic | 20.0% |
| !! | TGAACAATAAACACAAAATT+TGG | + | chr5.1:8443693-8443712 | MS.gene20264:intron | 20.0% |
| !! | TTATTATTGTTAAGCAACTT+AGG | - | chr5.1:8444120-8444139 | None:intergenic | 20.0% |
| !!! | AGATTTTAAAAAAGGGAAAA+TGG | + | chr5.1:8443761-8443780 | MS.gene20264:intron | 20.0% |
| !!! | TTATGATTTACTTGCTATTT+TGG | + | chr5.1:8443478-8443497 | MS.gene20264:CDS | 20.0% |
| !!! | TTTTAGACATAGTTTGAATT+TGG | + | chr5.1:8443929-8443948 | MS.gene20264:intron | 20.0% |
| ! | AAGAACATAAAACATCTCAA+TGG | - | chr5.1:8443998-8444017 | None:intergenic | 25.0% |
| ! | AATGATATCAAATTGAACCT+AGG | - | chr5.1:8443828-8443847 | None:intergenic | 25.0% |
| ! | GTTGTTCTATATGATAACAT+GGG | + | chr5.1:8443392-8443411 | MS.gene20264:CDS | 25.0% |
| ! | TCGACTATAAGTATATAGTT+TGG | + | chr5.1:8443896-8443915 | MS.gene20264:intron | 25.0% |
| ! | TGAACCTAGGTATAAAAAAA+AGG | - | chr5.1:8443815-8443834 | None:intergenic | 25.0% |
| ! | TGTTGTTCTATATGATAACA+TGG | + | chr5.1:8443391-8443410 | MS.gene20264:CDS | 25.0% |
| !! | TTTTATATGTGATTGTGACA+TGG | + | chr5.1:8444192-8444211 | MS.gene20264:intron | 25.0% |
| !!! | AGGAGTAACAATATTTTAAG+TGG | - | chr5.1:8443795-8443814 | None:intergenic | 25.0% |
| !!! | GTTTATTTTCTCTTTGAGTT+AGG | + | chr5.1:8444214-8444233 | MS.gene20264:intron | 25.0% |
| !!! | TACTCCTTTTTTTTATACCT+AGG | + | chr5.1:8443808-8443827 | MS.gene20264:intron | 25.0% |
| ACAAGTTTAAGGAAAAGATC+AGG | - | chr5.1:8443584-8443603 | None:intergenic | 30.0% | |
| ATTGAATCTTGCGTATTTGT+TGG | + | chr5.1:8443512-8443531 | MS.gene20264:CDS | 30.0% | |
| CGAAAATCATCAACAAGATA+AGG | - | chr5.1:8443371-8443390 | None:intergenic | 30.0% | |
| TATACAAGCTGAGAAAGATA+TGG | + | chr5.1:8444500-8444519 | MS.gene20264:CDS | 30.0% | |
| TATTGTTAAGCAACTTAGGT+AGG | - | chr5.1:8444116-8444135 | None:intergenic | 30.0% | |
| TCAATCAATTCAACTTTAGC+CGG | + | chr5.1:8443958-8443977 | MS.gene20264:intron | 30.0% | |
| TCAGCTTGTATAATATGACA+AGG | - | chr5.1:8444492-8444511 | None:intergenic | 30.0% | |
| TTGAACGATGTGAATTACTT+TGG | + | chr5.1:8444240-8444259 | MS.gene20264:CDS | 30.0% | |
| ! | AATTACAAAGCATGGTGTTA+TGG | + | chr5.1:8444312-8444331 | MS.gene20264:CDS | 30.0% |
| ! | TCTCAGAATCAAAGTATTCA+GGG | - | chr5.1:8443433-8443452 | None:intergenic | 30.0% |
| ! | TCTTTTCCTTAAACTTGTCA+TGG | + | chr5.1:8443586-8443605 | MS.gene20264:CDS | 30.0% |
| !!! | AAGTTTTAGGAACAGGAAAT+AGG | + | chr5.1:8443288-8443307 | MS.gene20264:CDS | 30.0% |
| AACACCGGAATAACAATATC+TGG | - | chr5.1:8444627-8444646 | None:intergenic | 35.0% | |
| AACGATGTGAATTACTTTGG+AGG | + | chr5.1:8444243-8444262 | MS.gene20264:CDS | 35.0% | |
| CAAAATGTTTCCACACAGAT+TGG | - | chr5.1:8443346-8443365 | None:intergenic | 35.0% | |
| CAAGAGAAATGTAAGGGTTA+TGG | - | chr5.1:8443864-8443883 | None:intergenic | 35.0% | |
| CAATCAATTCAACTTTAGCC+GGG | + | chr5.1:8443959-8443978 | MS.gene20264:intron | 35.0% | |
| CTTAAACTTGTCATGGTTTC+CGG | + | chr5.1:8443593-8443612 | MS.gene20264:CDS | 35.0% | |
| TACTAATTACCTTGGTGAAC+CGG | - | chr5.1:8443615-8443634 | None:intergenic | 35.0% | |
| TCGCTGAAAATTACAAAGCA+TGG | + | chr5.1:8444304-8444323 | MS.gene20264:CDS | 35.0% | |
| TGAATGTGTTTAAGCAACAC+CGG | - | chr5.1:8444642-8444661 | None:intergenic | 35.0% | |
| ! | ATCAAAGTATTCAGGGTTAG+TGG | - | chr5.1:8443426-8443445 | None:intergenic | 35.0% |
| ! | CTCACCAGATATTGTTATTC+CGG | + | chr5.1:8444620-8444639 | MS.gene20264:CDS | 35.0% |
| ! | CTCTCAGAATCAAAGTATTC+AGG | - | chr5.1:8443434-8443453 | None:intergenic | 35.0% |
| !! | ACATAGCTCTAATAGTGTCA+CGG | + | chr5.1:8444418-8444437 | MS.gene20264:CDS | 35.0% |
| !! | ATAGTTCTAGCTCATGGATT+TGG | + | chr5.1:8443314-8443333 | MS.gene20264:CDS | 35.0% |
| !! | CATTCTGTTTCTGCAATGAT+TGG | + | chr5.1:8443536-8443555 | MS.gene20264:CDS | 35.0% |
| !!! | AACGTGAAAGTTTTAGGAAC+AGG | + | chr5.1:8443281-8443300 | MS.gene20264:CDS | 35.0% |
| AATGGTATCAAGTGTCTACC+CGG | - | chr5.1:8443980-8443999 | None:intergenic | 40.0% | |
| ACAAGCTGAGAAAGATATGG+CGG | + | chr5.1:8444503-8444522 | MS.gene20264:CDS | 40.0% | |
| ATATCTGGTGAGCTTAACTG+CGG | - | chr5.1:8444612-8444631 | None:intergenic | 40.0% | |
| CGGAAACCATGACAAGTTTA+AGG | - | chr5.1:8443595-8443614 | None:intergenic | 40.0% | |
| CTATATGATAACATGGGTGC+TGG | + | chr5.1:8443398-8443417 | MS.gene20264:CDS | 40.0% | |
| GACACTATTAGAGCTATGTC+TGG | - | chr5.1:8444417-8444436 | None:intergenic | 40.0% | |
| GAGAGACATTCAAGCTTAGA+AGG | + | chr5.1:8443449-8443468 | MS.gene20264:CDS | 40.0% | |
| GAGTATCTTCACCAACACTT+AGG | + | chr5.1:8444543-8444562 | MS.gene20264:CDS | 40.0% | |
| GTCGAACATTGTTCAACATG+AGG | + | chr5.1:8444391-8444410 | MS.gene20264:CDS | 40.0% | |
| TATCTTCACCAACACTTAGG+TGG | + | chr5.1:8444546-8444565 | MS.gene20264:CDS | 40.0% | |
| TATGACAAGGCACAGTAACA+AGG | - | chr5.1:8444479-8444498 | None:intergenic | 40.0% | |
| TGTTCTTGTTGCTAACGTGT+CGG | + | chr5.1:8444011-8444030 | MS.gene20264:intron | 40.0% | |
| ! | CAGCGATAGCGTTGAATAAT+TGG | - | chr5.1:8444290-8444309 | None:intergenic | 40.0% |
| ! | GCTCACAACGTGAAAGTTTT+AGG | + | chr5.1:8443275-8443294 | MS.gene20264:CDS | 40.0% |
| !! | AGGTACATAGTTCTAGCTCA+TGG | + | chr5.1:8443308-8443327 | MS.gene20264:CDS | 40.0% |
| AGTCTGCATGACCTCAACAA+TGG | - | chr5.1:8444577-8444596 | None:intergenic | 45.0% | |
| ATTGTGTGTGTGACAGTGTG+AGG | - | chr5.1:8443726-8443745 | None:intergenic | 45.0% | |
| TGAGAAAGATATGGCGGTTC+CGG | + | chr5.1:8444509-8444528 | MS.gene20264:CDS | 45.0% | |
| TTGGAACAGACCAATCTGTG+TGG | + | chr5.1:8443333-8443352 | MS.gene20264:CDS | 45.0% | |
| !!! | ATAAAATAGATTTTAAAAAA+GGG | + | chr5.1:8443754-8443773 | MS.gene20264:intron | 5.0% |
| !!! | TATAAAATAGATTTTAAAAA+AGG | + | chr5.1:8443753-8443772 | MS.gene20264:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+CGG | + | chr5.1:8444666-8444685 | MS.gene20264:CDS | 5.0% |
| AGATACTCCGAAACCACCAC+CGG | - | chr5.1:8444531-8444550 | None:intergenic | 50.0% | |
| AGGTGGTCAGTCCATTGTTG+AGG | + | chr5.1:8444563-8444582 | MS.gene20264:CDS | 50.0% | |
| CATGGATTCAGTGGCAGTAC+AGG | + | chr5.1:8444362-8444381 | MS.gene20264:CDS | 50.0% | |
| GTGTTATGGATTCGCTCCAC+TGG | + | chr5.1:8444326-8444345 | MS.gene20264:CDS | 50.0% | |
| GTTGAGGTCATGCAGACTGA+TGG | + | chr5.1:8444579-8444598 | MS.gene20264:CDS | 50.0% | |
| TCATGGTTTCCGGTTCACCA+AGG | + | chr5.1:8443603-8443622 | MS.gene20264:CDS | 50.0% | |
| TGGACTGACCACCTAAGTGT+TGG | - | chr5.1:8444557-8444576 | None:intergenic | 50.0% | |
| GAAAGATATGGCGGTTCCGG+TGG | + | chr5.1:8444512-8444531 | MS.gene20264:CDS | 55.0% | |
| GTGTGTGTGACAGTGTGAGG+CGG | - | chr5.1:8443723-8443742 | None:intergenic | 55.0% | |
| AGATATGGCGGTTCCGGTGG+TGG | + | chr5.1:8444515-8444534 | MS.gene20264:CDS | 60.0% | |
| GGGTGGGGACATGGATTCAG+TGG | + | chr5.1:8444353-8444372 | MS.gene20264:CDS | 60.0% | |
| ! | GGATTCGCTCCACTGGCTGT+GGG | + | chr5.1:8444333-8444352 | MS.gene20264:CDS | 60.0% |
| ! | TGGATTCGCTCCACTGGCTG+TGG | + | chr5.1:8444332-8444351 | MS.gene20264:CDS | 60.0% |
| ACTGGCTGTGGGTGGGGACA+TGG | + | chr5.1:8444344-8444363 | MS.gene20264:CDS | 65.0% | |
| ATGTCCCCACCCACAGCCAG+TGG | - | chr5.1:8444345-8444364 | None:intergenic | 65.0% | |
| ! | GGCGGTTCCGGTGGTGGTTT+CGG | + | chr5.1:8444521-8444540 | MS.gene20264:CDS | 65.0% |
| ! | TCGCTCCACTGGCTGTGGGT+GGG | + | chr5.1:8444337-8444356 | MS.gene20264:CDS | 65.0% |
| ! | TTCGCTCCACTGGCTGTGGG+TGG | + | chr5.1:8444336-8444355 | MS.gene20264:CDS | 65.0% |
| ! | CGCTCCACTGGCTGTGGGTG+GGG | + | chr5.1:8444338-8444357 | MS.gene20264:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8443257 | 8444698 | 8443257 | ID=MS.gene20264 |
| chr5.1 | mRNA | 8443257 | 8444698 | 8443257 | ID=MS.gene20264.t1;Parent=MS.gene20264 |
| chr5.1 | exon | 8443257 | 8443624 | 8443257 | ID=MS.gene20264.t1.exon1;Parent=MS.gene20264.t1 |
| chr5.1 | CDS | 8443257 | 8443624 | 8443257 | ID=cds.MS.gene20264.t1;Parent=MS.gene20264.t1 |
| chr5.1 | exon | 8444236 | 8444698 | 8444236 | ID=MS.gene20264.t1.exon2;Parent=MS.gene20264.t1 |
| chr5.1 | CDS | 8444236 | 8444698 | 8444236 | ID=cds.MS.gene20264.t1;Parent=MS.gene20264.t1 |
| Gene Sequence |
| Protein sequence |
