AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22567

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22567.t1 MTR_5g011520 97.846 325 3 2 1 321 1 325 0.0 630
MS.gene22567.t1 MTR_8g036060 58.982 334 83 12 1 314 1 300 5.69e-90 271
MS.gene22567.t1 MTR_5g091630 62.727 220 69 2 41 259 1 208 2.65e-78 239
MS.gene22567.t1 MTR_1g073860 64.467 197 62 2 91 279 87 283 7.20e-69 218
MS.gene22567.t1 MTR_1g079810 65.761 184 62 1 92 275 68 250 1.63e-68 216
MS.gene22567.t1 MTR_1g044155 73.885 157 41 0 91 247 119 275 4.97e-67 214
MS.gene22567.t1 MTR_7g080980 68.874 151 47 0 107 257 66 216 1.44e-65 207
MS.gene22567.t1 MTR_3g068035 53.125 224 78 4 108 314 89 302 3.38e-65 208
MS.gene22567.t1 MTR_4g098450 61.275 204 70 2 47 250 34 228 7.26e-65 206
MS.gene22567.t1 MTR_3g100470 50.802 187 86 3 91 273 67 251 4.91e-58 189
MS.gene22567.t1 MTR_5g080580 52.358 212 95 2 40 247 29 238 2.63e-54 180
MS.gene22567.t1 MTR_5g066020 43.678 261 114 8 30 282 6 241 2.37e-48 162
MS.gene22567.t1 MTR_5g089600 39.456 147 78 2 97 232 76 222 2.53e-30 115
MS.gene22567.t1 MTR_4g057487 30.918 207 133 3 97 293 16 222 2.83e-24 99.4
MS.gene22567.t1 MTR_5g010330 37.427 171 94 5 98 256 104 273 4.02e-24 100
MS.gene22567.t1 MTR_5g089700 35.333 150 87 2 97 237 74 222 4.55e-23 95.9
MS.gene22567.t1 MTR_4g057525 34.161 161 96 3 97 247 35 195 6.31e-23 95.5
MS.gene22567.t1 MTR_1g032910 35.329 167 92 5 93 245 96 260 3.96e-22 94.7
MS.gene22567.t1 MTR_1g053685 32.099 162 101 2 95 247 82 243 1.23e-21 93.2
MS.gene22567.t1 MTR_5g089090 37.162 148 87 1 98 239 28 175 3.47e-21 90.1
MS.gene22567.t1 MTR_1g061530 41.600 125 69 2 128 248 144 268 6.36e-21 92.4
MS.gene22567.t1 MTR_6g061670 42.241 116 64 2 125 237 130 245 9.16e-20 88.6
MS.gene22567.t1 MTR_6g061670 42.241 116 64 2 125 237 125 240 1.23e-19 88.2
MS.gene22567.t1 MTR_1g079780 35.833 120 76 1 120 238 104 223 1.84e-19 87.8
MS.gene22567.t1 MTR_1g073870 33.188 229 97 5 93 321 47 219 2.25e-18 82.8
MS.gene22567.t1 MTR_1g076710 39.264 163 77 5 95 237 88 248 3.68e-18 84.3
MS.gene22567.t1 MTR_4g098460 35.443 158 85 4 88 237 47 195 3.73e-18 83.2
MS.gene22567.t1 MTR_8g098390 38.710 124 72 3 117 237 158 280 8.99e-18 83.2
MS.gene22567.t1 MTR_8g036160 43.860 114 60 1 128 237 145 258 1.33e-16 79.7
MS.gene22567.t1 MTR_4g098460 34.568 162 86 4 88 237 47 200 2.19e-16 78.6
MS.gene22567.t1 MTR_4g069110 38.542 96 59 0 97 192 33 128 2.62e-16 75.9
MS.gene22567.t1 MTR_7g077120 30.769 169 108 3 98 260 127 292 4.93e-16 78.2
MS.gene22567.t1 MTR_7g116320 37.288 118 74 0 120 237 138 255 5.55e-16 78.2
MS.gene22567.t1 MTR_7g074935 49.254 67 34 0 128 194 130 196 1.10e-15 77.0
MS.gene22567.t1 MTR_7g116320 39.200 125 72 2 125 245 143 267 4.39e-15 74.3
MS.gene22567.t1 MTR_8g078930 34.507 142 71 4 129 251 5 143 7.80e-15 71.2
MS.gene22567.t1 MTR_4g055813 37.097 124 76 2 128 249 22 145 1.94e-14 72.8
MS.gene22567.t1 MTR_8g031100 37.671 146 85 2 98 237 125 270 3.24e-14 72.8
MS.gene22567.t1 MTR_4g101990 49.254 67 34 0 128 194 147 213 1.67e-13 70.5
MS.gene22567.t1 MTR_5g011680 32.258 124 77 2 128 244 145 268 3.13e-13 69.3
MS.gene22567.t1 MTR_4g055803 38.983 118 62 3 128 237 128 243 3.75e-13 70.1
MS.gene22567.t1 MTR_5g011610 33.898 118 74 2 122 237 53 168 3.02e-12 67.0
MS.gene22567.t1 MTR_4g055833 38.793 116 65 2 128 237 125 240 5.76e-12 66.2
MS.gene22567.t1 MTR_5g011620 32.110 109 72 1 129 237 119 225 8.29e-12 66.2
MS.gene22567.t1 MTR_3g116100 34.821 112 66 3 137 245 155 262 1.18e-11 65.1
MS.gene22567.t1 MTR_6g060670 35.135 111 70 2 128 238 180 288 3.09e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22567.t1 AT4G22810 55.429 350 101 12 1 321 1 324 1.50e-79 245
MS.gene22567.t1 AT2G45430 56.250 336 113 11 1 321 1 317 2.65e-75 234
MS.gene22567.t1 AT4G12050 64.469 273 74 6 1 251 1 272 3.71e-75 234
MS.gene22567.t1 AT2G42940 68.293 164 52 0 96 259 51 214 1.47e-71 222
MS.gene22567.t1 AT2G35270 69.872 156 47 0 96 251 76 231 5.84e-71 222
MS.gene22567.t1 AT3G60870 57.082 233 79 5 91 321 52 265 1.50e-69 218
MS.gene22567.t1 AT4G14465 54.894 235 89 5 91 321 60 281 2.17e-68 215
MS.gene22567.t1 AT1G76500 65.244 164 48 1 95 249 69 232 2.89e-63 202
MS.gene22567.t1 AT3G04570 69.697 165 42 1 91 247 73 237 3.85e-63 202
MS.gene22567.t1 AT4G17800 63.584 173 51 1 107 267 91 263 4.74e-63 202
MS.gene22567.t1 AT5G49700 47.449 196 88 4 96 281 54 244 1.35e-56 184
MS.gene22567.t1 AT4G35390 72.667 150 39 1 98 245 63 212 2.71e-55 182
MS.gene22567.t1 AT3G55560 64.583 144 50 1 105 247 95 238 4.34e-50 169
MS.gene22567.t1 AT1G20900 67.296 159 43 1 98 247 86 244 5.01e-50 169
MS.gene22567.t1 AT1G14490 44.751 181 91 3 99 272 25 203 6.21e-41 142
MS.gene22567.t1 AT1G14490 44.751 181 91 3 99 272 6 184 1.00e-40 141
MS.gene22567.t1 AT1G63470 42.466 146 77 3 98 237 147 291 3.55e-25 104
MS.gene22567.t1 AT5G62260 40.000 140 78 3 111 245 145 283 2.87e-23 97.8
MS.gene22567.t1 AT5G62260 42.424 132 70 3 111 237 145 275 1.51e-22 97.4
MS.gene22567.t1 AT5G62260 42.424 132 70 3 111 237 145 275 1.51e-22 97.4
MS.gene22567.t1 AT5G51590 43.363 113 61 1 128 237 181 293 6.61e-22 95.9
MS.gene22567.t1 AT4G12080 41.593 113 63 1 128 237 173 285 3.21e-21 93.2
MS.gene22567.t1 AT2G33620 40.260 154 82 3 87 237 132 278 3.92e-21 92.8
MS.gene22567.t1 AT2G33620 40.260 154 82 3 87 237 132 278 3.92e-21 92.8
MS.gene22567.t1 AT2G33620 40.260 154 82 3 87 237 132 278 3.92e-21 92.8
MS.gene22567.t1 AT2G33620 40.260 154 82 3 87 237 132 278 3.92e-21 92.8
MS.gene22567.t1 AT4G25320 41.593 113 63 1 128 237 169 281 8.47e-21 92.4
MS.gene22567.t1 AT4G17950 37.821 156 90 3 87 237 185 338 1.41e-20 92.0
MS.gene22567.t1 AT3G04590 36.364 110 70 0 128 237 174 283 7.28e-20 89.7
MS.gene22567.t1 AT3G04590 36.364 110 70 0 128 237 174 283 2.09e-19 87.4
MS.gene22567.t1 AT2G45850 36.538 156 81 5 98 241 132 281 2.85e-18 84.7
MS.gene22567.t1 AT2G45850 36.538 156 81 5 98 241 132 281 2.85e-18 84.7
MS.gene22567.t1 AT1G63480 30.846 201 117 5 98 279 124 321 6.38e-18 83.6
MS.gene22567.t1 AT1G63480 30.846 201 117 5 98 279 124 321 6.38e-18 83.6
MS.gene22567.t1 AT1G63480 30.846 201 117 5 98 279 124 321 6.38e-18 83.6
MS.gene22567.t1 AT1G63480 30.846 201 117 5 98 279 124 321 6.38e-18 83.6
MS.gene22567.t1 AT1G63480 30.846 201 117 5 98 279 124 321 6.38e-18 83.6
MS.gene22567.t1 AT1G63480 30.846 201 117 5 98 279 130 327 7.75e-18 83.6
MS.gene22567.t1 AT1G63480 30.846 201 117 5 98 279 130 327 7.75e-18 83.6
MS.gene22567.t1 AT2G45850 35.948 153 80 5 98 238 132 278 3.09e-17 80.9
MS.gene22567.t1 AT4G00200 43.363 113 61 1 128 237 126 238 1.25e-15 76.6
MS.gene22567.t1 AT4G00200 43.363 113 61 1 128 237 126 238 1.25e-15 76.6
MS.gene22567.t1 AT5G46640 38.514 148 86 2 93 237 150 295 1.57e-13 71.2
MS.gene22567.t1 AT4G22770 38.938 113 66 1 128 237 153 265 2.00e-13 70.5
MS.gene22567.t1 AT4G22770 38.938 113 66 1 128 237 153 265 2.00e-13 70.5
MS.gene22567.t1 AT3G61310 32.877 146 92 2 98 237 134 279 2.03e-12 67.4

Find 94 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTGCTTTGATTGCTTC+TGG 0.209013 5.2:-4189500 MS.gene22567:CDS
CCTGCTCCGCCCGCTGCTTC+TGG 0.230880 5.2:-4189575 MS.gene22567:CDS
GTTGCTGCTGTTGGTGTTGA+TGG 0.289751 5.2:+4190089 None:intergenic
TTAAGATTAGGATTAGAATT+AGG 0.294967 5.2:+4189281 None:intergenic
GGAGCTGTTGTTACACTTCA+TGG 0.313521 5.2:-4189641 MS.gene22567:CDS
GTGATAATAATCGGTGGTTT+TGG 0.328875 5.2:+4189830 None:intergenic
AGATGCCTTCTGATAATTTC+TGG 0.330543 5.2:-4189241 MS.gene22567:CDS
GTTGTTGGTGGAAGTGTTGT+TGG 0.349227 5.2:-4189518 MS.gene22567:CDS
CCAGAAGCAGCGGGCGGAGC+AGG 0.354965 5.2:+4189575 None:intergenic
GATCCAGCTGGTCTTCCTCT+TGG 0.365755 5.2:+4189863 None:intergenic
TTCGAGATTCTTTCGCTGGC+TGG 0.370912 5.2:-4189614 MS.gene22567:CDS
TTGTCCGCCCGCTAAATATA+TGG 0.390502 5.2:+4189547 None:intergenic
ACCTTGAAGTTGTTGAATAG+AGG 0.394601 5.2:+4189403 None:intergenic
ACCTCCTCCGGATTCTAACT+TGG 0.395394 5.2:+4189922 None:intergenic
AATCTTAATCCTAATCTTCT+CGG 0.405395 5.2:-4189266 MS.gene22567:CDS
GAATCCGGAGGAGGTGGTTC+CGG 0.408435 5.2:-4189914 MS.gene22567:CDS
GGCGGACAAGGGCAGGTTGT+TGG 0.415663 5.2:-4189533 MS.gene22567:CDS
GCAGCGGGCGGAGCAGGTGG+TGG 0.424575 5.2:+4189581 None:intergenic
TGCTTATGAGAGACTTCCTT+TGG 0.425099 5.2:-4189441 MS.gene22567:CDS
AGAAGATTAGGATTAAGATT+AGG 0.426727 5.2:+4189269 None:intergenic
CTAAGGCAACCGGCTTCTCC+TGG 0.438533 5.2:-4189662 MS.gene22567:CDS
GGTGGTTCTCCAAGTGGTGG+TGG 0.441214 5.2:-4189371 MS.gene22567:CDS
GGTGCTGTTGTTGCTGCTGT+TGG 0.446147 5.2:+4190080 None:intergenic
CTTCCTTTGGAAGATGATGA+TGG 0.447229 5.2:-4189428 MS.gene22567:CDS
CTTCAAGGTGGTGGTGGTGG+TGG 0.447916 5.2:-4189389 MS.gene22567:CDS
TCCTCTATTCAACAACTTCA+AGG 0.448261 5.2:-4189404 MS.gene22567:CDS
TCTGATAATTTCTGGCCAAC+CGG 0.452010 5.2:-4189233 MS.gene22567:CDS
CCTCCTCCGGATTCTAACTT+GGG 0.455968 5.2:+4189923 None:intergenic
AGCGGAAGTAGCAGCGGCGG+TGG 0.456861 5.2:-4190004 MS.gene22567:CDS
GGCATCTGACCGAGAAGATT+AGG 0.459191 5.2:+4189257 None:intergenic
GCTGTAAAGTGTGGAATTGA+TGG 0.472588 5.2:+4190059 None:intergenic
GGTTCTCCAAGTGGTGGTGG+TGG 0.480891 5.2:-4189368 MS.gene22567:CDS
AAGGTTCGAGATTCTTTCGC+TGG 0.482991 5.2:-4189618 MS.gene22567:CDS
CAACTTCAAGGTGGTGGTGG+TGG 0.483443 5.2:-4189392 MS.gene22567:CDS
GAAGCAGACATAATAACAAC+AGG 0.487835 5.2:+4189476 None:intergenic
AAACGTGACACTAAGGCAAC+CGG 0.494419 5.2:-4189672 MS.gene22567:CDS
TTTAGCCCCAAGTTAGAATC+CGG 0.494865 5.2:-4189929 MS.gene22567:CDS
TGATGCAAACGCCTCTTTGA+CGG 0.495629 5.2:+4189717 None:intergenic
ATATATTTAGCGGGCGGACA+AGG 0.504387 5.2:-4189545 MS.gene22567:CDS
AGACCAAGAGGAAGACCAGC+TGG 0.509576 5.2:-4189866 MS.gene22567:CDS
AGATTAGGATTAGAATTAGG+AGG 0.514675 5.2:+4189284 None:intergenic
CGCCTTGAAAACTCATGTGA+TGG 0.515478 5.2:-4189792 MS.gene22567:CDS
CATTGAATCCGTGTCGCCAC+CGG 0.518639 5.2:+4189895 None:intergenic
GCCACCGGAACCACCTCCTC+CGG 0.519443 5.2:+4189910 None:intergenic
TGGTTTGACCATATATTTAG+CGG 0.520577 5.2:-4189555 MS.gene22567:CDS
TAATATCATCATGATCAATA+CGG 0.521624 5.2:+4189203 None:intergenic
GTTTGCATCATGAGTGGGAC+AGG 0.526109 5.2:-4189704 MS.gene22567:CDS
GGTTTGACCATATATTTAGC+GGG 0.527226 5.2:-4189554 MS.gene22567:CDS
TTTAGCGGGCGGACAAGGGC+AGG 0.528930 5.2:-4189540 MS.gene22567:CDS
AAGTTAGAATCCGGAGGAGG+TGG 0.540145 5.2:-4189920 MS.gene22567:CDS
TGAAGTGTAACAACAGCTCC+AGG 0.541310 5.2:+4189644 None:intergenic
TGATCAATACGGAGAACGAC+CGG 0.541431 5.2:+4189214 None:intergenic
CAACAACTTCAAGGTGGTGG+TGG 0.543583 5.2:-4189395 MS.gene22567:CDS
CTGTCACGTGTGATAATAAT+CGG 0.545674 5.2:+4189821 None:intergenic
AGGTGGTTCCGGTGGCGACA+CGG 0.546707 5.2:-4189903 MS.gene22567:CDS
TTTGCTAGACGCCGTCAAAG+AGG 0.554223 5.2:-4189728 MS.gene22567:CDS
TTAGGATTAGAATTAGGAGG+AGG 0.554265 5.2:+4189287 None:intergenic
TCTCTTGCTGTGTGGAAAGG+TGG 0.554885 5.2:+4190124 None:intergenic
GGACAAGGGCAGGTTGTTGG+TGG 0.555291 5.2:-4189530 MS.gene22567:CDS
GAAGCAGCGGGCGGAGCAGG+TGG 0.558808 5.2:+4189578 None:intergenic
TCCGGAGGAGGTGGTTCCGG+TGG 0.560060 5.2:-4189911 MS.gene22567:CDS
ACAACAGCTCCAGGAGAAGC+CGG 0.562958 5.2:+4189653 None:intergenic
GGTGGTGGTGGTTCTCCAAG+TGG 0.570648 5.2:-4189377 MS.gene22567:CDS
GTTGTTGCTGCTGTAAAGTG+TGG 0.572769 5.2:+4190050 None:intergenic
CGGTTACAAACGTGACACTA+AGG 0.574287 5.2:-4189679 MS.gene22567:CDS
CTGTTGTTACACTTCATGGA+AGG 0.580978 5.2:-4189637 MS.gene22567:CDS
CCCAAGTTAGAATCCGGAGG+AGG 0.587598 5.2:-4189923 MS.gene22567:CDS
ATTCAACAACTTCAAGGTGG+TGG 0.588300 5.2:-4189398 MS.gene22567:CDS
ATGGTCAAACCAGAAGCAGC+GGG 0.592455 5.2:+4189566 None:intergenic
GAGGCGTTTGCATCATGAGT+GGG 0.596897 5.2:-4189709 MS.gene22567:CDS
CATCATGAGTGGGACAGGAA+CGG 0.597354 5.2:-4189699 MS.gene22567:CDS
CTTGCTGTGTGGAAAGGTGG+AGG 0.605189 5.2:+4190127 None:intergenic
TATATTTAGCGGGCGGACAA+GGG 0.608521 5.2:-4189544 MS.gene22567:CDS
GGTGGTGGTTCTCCAAGTGG+TGG 0.613666 5.2:-4189374 MS.gene22567:CDS
AGATCTCTTGCTGTGTGGAA+AGG 0.616128 5.2:+4190121 None:intergenic
CTCCTCCGGATTCTAACTTG+GGG 0.622134 5.2:+4189924 None:intergenic
CAAAGCGGAAGTAGCAGCGG+CGG 0.624512 5.2:-4190007 MS.gene22567:CDS
GAACCATCATCATCTTCCAA+AGG 0.634834 5.2:+4189425 None:intergenic
AGAGGCGTTTGCATCATGAG+TGG 0.639567 5.2:-4189710 MS.gene22567:CDS
CAATACGGAGAACGACCGGT+TGG 0.641650 5.2:+4189218 None:intergenic
GTCAAACCAGAAGCAGCGGG+CGG 0.648457 5.2:+4189569 None:intergenic
AGCCCCAAGTTAGAATCCGG+AGG 0.649404 5.2:-4189926 MS.gene22567:CDS
TCAATGACAAGAAGACCAAG+AGG 0.650544 5.2:-4189878 MS.gene22567:CDS
TATGGTCAAACCAGAAGCAG+CGG 0.651114 5.2:+4189565 None:intergenic
ATGGATCAAATAACATCACA+TGG 0.651930 5.2:-4190160 MS.gene22567:CDS
GAACAAAGCGGAAGTAGCAG+CGG 0.653465 5.2:-4190010 MS.gene22567:CDS
GTTGGCCAGAAATTATCAGA+AGG 0.660128 5.2:+4189236 None:intergenic
GATGAAGATCTCTTGCTGTG+TGG 0.664521 5.2:+4190116 None:intergenic
TTGACCATATATTTAGCGGG+CGG 0.665260 5.2:-4189551 MS.gene22567:CDS
CTTGAAAACTCATGTGATGG+AGG 0.692082 5.2:-4189789 MS.gene22567:CDS
ACAGATCAAGATGAACAAAG+CGG 0.697061 5.2:-4190022 MS.gene22567:CDS
TCACGTGTGATAATAATCGG+TGG 0.702591 5.2:+4189824 None:intergenic
TCTATTCAACAACTTCAAGG+TGG 0.711490 5.2:-4189401 MS.gene22567:CDS
CATGTGATGGAGGTTGCAGA+CGG 0.715960 5.2:-4189779 MS.gene22567:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGATTAGGATTAGAATT+AGG + chr5.2:4190099-4190118 None:intergenic 20.0%
! AATCTTAATCCTAATCTTCT+CGG - chr5.2:4190111-4190130 MS.gene22567:CDS 25.0%
! AGAAGATTAGGATTAAGATT+AGG + chr5.2:4190111-4190130 None:intergenic 25.0%
AGATTAGGATTAGAATTAGG+AGG + chr5.2:4190096-4190115 None:intergenic 30.0%
ATGGATCAAATAACATCACA+TGG - chr5.2:4189217-4189236 MS.gene22567:CDS 30.0%
TGGTTTGACCATATATTTAG+CGG - chr5.2:4189822-4189841 MS.gene22567:CDS 30.0%
ACAGATCAAGATGAACAAAG+CGG - chr5.2:4189355-4189374 MS.gene22567:CDS 35.0%
ACCTTGAAGTTGTTGAATAG+AGG + chr5.2:4189977-4189996 None:intergenic 35.0%
AGATGCCTTCTGATAATTTC+TGG - chr5.2:4190136-4190155 MS.gene22567:CDS 35.0%
CTGTCACGTGTGATAATAAT+CGG + chr5.2:4189559-4189578 None:intergenic 35.0%
GAAGCAGACATAATAACAAC+AGG + chr5.2:4189904-4189923 None:intergenic 35.0%
GGTTTGACCATATATTTAGC+GGG - chr5.2:4189823-4189842 MS.gene22567:CDS 35.0%
TCCTCTATTCAACAACTTCA+AGG - chr5.2:4189973-4189992 MS.gene22567:CDS 35.0%
TCTATTCAACAACTTCAAGG+TGG - chr5.2:4189976-4189995 MS.gene22567:CDS 35.0%
TTAGGATTAGAATTAGGAGG+AGG + chr5.2:4190093-4190112 None:intergenic 35.0%
! GTGATAATAATCGGTGGTTT+TGG + chr5.2:4189550-4189569 None:intergenic 35.0%
!!! TGTTGTTGCTGTTTTCTTCT+CGG + chr5.2:4189414-4189433 None:intergenic 35.0%
ATTCAACAACTTCAAGGTGG+TGG - chr5.2:4189979-4189998 MS.gene22567:CDS 40.0%
CTGTTGTTACACTTCATGGA+AGG - chr5.2:4189740-4189759 MS.gene22567:CDS 40.0%
CTTGAAAACTCATGTGATGG+AGG - chr5.2:4189588-4189607 MS.gene22567:CDS 40.0%
GAACCATCATCATCTTCCAA+AGG + chr5.2:4189955-4189974 None:intergenic 40.0%
GCTGTAAAGTGTGGAATTGA+TGG + chr5.2:4189321-4189340 None:intergenic 40.0%
GTTGGCCAGAAATTATCAGA+AGG + chr5.2:4190144-4190163 None:intergenic 40.0%
TCAATGACAAGAAGACCAAG+AGG - chr5.2:4189499-4189518 MS.gene22567:CDS 40.0%
TCACGTGTGATAATAATCGG+TGG + chr5.2:4189556-4189575 None:intergenic 40.0%
TGCTTATGAGAGACTTCCTT+TGG - chr5.2:4189936-4189955 MS.gene22567:CDS 40.0%
TTGACCATATATTTAGCGGG+CGG - chr5.2:4189826-4189845 MS.gene22567:CDS 40.0%
TTTAGCCCCAAGTTAGAATC+CGG - chr5.2:4189448-4189467 MS.gene22567:CDS 40.0%
! CAGCAACAACAACAGCTTTT+AGG - chr5.2:4190036-4190055 MS.gene22567:CDS 40.0%
! CTCCATCACATGAGTTTTCA+AGG + chr5.2:4189590-4189609 None:intergenic 40.0%
! CTTCCTTTGGAAGATGATGA+TGG - chr5.2:4189949-4189968 MS.gene22567:CDS 40.0%
!! TCTGATAATTTCTGGCCAAC+CGG - chr5.2:4190144-4190163 MS.gene22567:CDS 40.0%
!! TGTTTTCTTCTCGGTTTGTG+AGG + chr5.2:4189405-4189424 None:intergenic 40.0%
!!! CGGTGGTTTTGGTTTGTTTT+TGG + chr5.2:4189539-4189558 None:intergenic 40.0%
AAACGTGACACTAAGGCAAC+CGG - chr5.2:4189705-4189724 MS.gene22567:CDS 45.0%
AAGGTTCGAGATTCTTTCGC+TGG - chr5.2:4189759-4189778 MS.gene22567:CDS 45.0%
CGCCTTGAAAACTCATGTGA+TGG - chr5.2:4189585-4189604 MS.gene22567:CDS 45.0%
CGGTTACAAACGTGACACTA+AGG - chr5.2:4189698-4189717 MS.gene22567:CDS 45.0%
GGAGCTGTTGTTACACTTCA+TGG - chr5.2:4189736-4189755 MS.gene22567:CDS 45.0%
GTTGTTGCTGCTGTAAAGTG+TGG + chr5.2:4189330-4189349 None:intergenic 45.0%
TATGGTCAAACCAGAAGCAG+CGG + chr5.2:4189815-4189834 None:intergenic 45.0%
TGAAGTGTAACAACAGCTCC+AGG + chr5.2:4189736-4189755 None:intergenic 45.0%
TGATGCAAACGCCTCTTTGA+CGG + chr5.2:4189663-4189682 None:intergenic 45.0%
TTGTCCGCCCGCTAAATATA+TGG + chr5.2:4189833-4189852 None:intergenic 45.0%
! AGATCTCTTGCTGTGTGGAA+AGG + chr5.2:4189259-4189278 None:intergenic 45.0%
! ATATATTTAGCGGGCGGACA+AGG - chr5.2:4189832-4189851 MS.gene22567:CDS 45.0%
! GATGAAGATCTCTTGCTGTG+TGG + chr5.2:4189264-4189283 None:intergenic 45.0%
! GGAGGCATAGCTTGAAAAAG+TGG + chr5.2:4190075-4190094 None:intergenic 45.0%
! GTTGGTGCTTTGATTGCTTC+TGG - chr5.2:4189877-4189896 MS.gene22567:CDS 45.0%
! TATATTTAGCGGGCGGACAA+GGG - chr5.2:4189833-4189852 MS.gene22567:CDS 45.0%
!! GTTGTTGGTGGAAGTGTTGT+TGG - chr5.2:4189859-4189878 MS.gene22567:CDS 45.0%
!!! GGTTTGTTTTTGGATCCAGC+TGG + chr5.2:4189529-4189548 None:intergenic 45.0%
AAGTTAGAATCCGGAGGAGG+TGG - chr5.2:4189457-4189476 MS.gene22567:CDS 50.0%
ACCTCCTCCGGATTCTAACT+TGG + chr5.2:4189458-4189477 None:intergenic 50.0%
ATGGTCAAACCAGAAGCAGC+GGG + chr5.2:4189814-4189833 None:intergenic 50.0%
CATCATGAGTGGGACAGGAA+CGG - chr5.2:4189678-4189697 MS.gene22567:CDS 50.0%
CCTCCTCCGGATTCTAACTT+GGG + chr5.2:4189457-4189476 None:intergenic 50.0%
CTCCTCCGGATTCTAACTTG+GGG + chr5.2:4189456-4189475 None:intergenic 50.0%
GAACAAAGCGGAAGTAGCAG+CGG - chr5.2:4189367-4189386 MS.gene22567:CDS 50.0%
GGCATCTGACCGAGAAGATT+AGG + chr5.2:4190123-4190142 None:intergenic 50.0%
GTTTGCATCATGAGTGGGAC+AGG - chr5.2:4189673-4189692 MS.gene22567:CDS 50.0%
TTCGAGATTCTTTCGCTGGC+TGG - chr5.2:4189763-4189782 MS.gene22567:CDS 50.0%
TTTGCTAGACGCCGTCAAAG+AGG - chr5.2:4189649-4189668 MS.gene22567:CDS 50.0%
! CAACAACTTCAAGGTGGTGG+TGG - chr5.2:4189982-4190001 MS.gene22567:CDS 50.0%
! CATGTGATGGAGGTTGCAGA+CGG - chr5.2:4189598-4189617 MS.gene22567:CDS 50.0%
! GAGGCGTTTGCATCATGAGT+GGG - chr5.2:4189668-4189687 MS.gene22567:CDS 50.0%
! TCTCTTGCTGTGTGGAAAGG+TGG + chr5.2:4189256-4189275 None:intergenic 50.0%
!! AGAGGCGTTTGCATCATGAG+TGG - chr5.2:4189667-4189686 MS.gene22567:CDS 50.0%
!! GTTGCTGCTGTTGGTGTTGA+TGG + chr5.2:4189291-4189310 None:intergenic 50.0%
ACAACAGCTCCAGGAGAAGC+CGG + chr5.2:4189727-4189746 None:intergenic 55.0%
AGACCAAGAGGAAGACCAGC+TGG - chr5.2:4189511-4189530 MS.gene22567:CDS 55.0%
AGCCCCAAGTTAGAATCCGG+AGG - chr5.2:4189451-4189470 MS.gene22567:CDS 55.0%
CAATACGGAGAACGACCGGT+TGG + chr5.2:4190162-4190181 None:intergenic 55.0%
CATTGAATCCGTGTCGCCAC+CGG + chr5.2:4189485-4189504 None:intergenic 55.0%
CCCAAGTTAGAATCCGGAGG+AGG - chr5.2:4189454-4189473 MS.gene22567:CDS 55.0%
TGAACACCACCACCACCACT+TGG + chr5.2:4190018-4190037 None:intergenic 55.0%
! CTTGCTGTGTGGAAAGGTGG+AGG + chr5.2:4189253-4189272 None:intergenic 55.0%
!! CAACTTCAAGGTGGTGGTGG+TGG - chr5.2:4189985-4190004 MS.gene22567:CDS 55.0%
!! GATCCAGCTGGTCTTCCTCT+TGG + chr5.2:4189517-4189536 None:intergenic 55.0%
!! GGTGCTGTTGTTGCTGCTGT+TGG + chr5.2:4189300-4189319 None:intergenic 55.0%
CAAAGCGGAAGTAGCAGCGG+CGG - chr5.2:4189370-4189389 MS.gene22567:CDS 60.0%
GAATCCGGAGGAGGTGGTTC+CGG - chr5.2:4189463-4189482 MS.gene22567:CDS 60.0%
GGACAAGGGCAGGTTGTTGG+TGG - chr5.2:4189847-4189866 MS.gene22567:CDS 60.0%
GGTGGTTCTCCAAGTGGTGG+TGG - chr5.2:4190006-4190025 MS.gene22567:CDS 60.0%
GTCAAACCAGAAGCAGCGGG+CGG + chr5.2:4189811-4189830 None:intergenic 60.0%
! CTAAGGCAACCGGCTTCTCC+TGG - chr5.2:4189715-4189734 MS.gene22567:CDS 60.0%
! GGTGGTGGTTCTCCAAGTGG+TGG - chr5.2:4190003-4190022 MS.gene22567:CDS 60.0%
!! CTTCAAGGTGGTGGTGGTGG+TGG - chr5.2:4189988-4190007 MS.gene22567:CDS 60.0%
!! GGTGGTGGTGGTTCTCCAAG+TGG - chr5.2:4190000-4190019 MS.gene22567:CDS 60.0%
!! GGTTCTCCAAGTGGTGGTGG+TGG - chr5.2:4190009-4190028 MS.gene22567:CDS 60.0%
AGGTGGTTCCGGTGGCGACA+CGG - chr5.2:4189474-4189493 MS.gene22567:CDS 65.0%
GGCGGACAAGGGCAGGTTGT+TGG - chr5.2:4189844-4189863 MS.gene22567:CDS 65.0%
! TTTAGCGGGCGGACAAGGGC+AGG - chr5.2:4189837-4189856 MS.gene22567:CDS 65.0%
AGCGGAAGTAGCAGCGGCGG+TGG - chr5.2:4189373-4189392 MS.gene22567:CDS 70.0%
GCCACCGGAACCACCTCCTC+CGG + chr5.2:4189470-4189489 None:intergenic 70.0%
TCCGGAGGAGGTGGTTCCGG+TGG - chr5.2:4189466-4189485 MS.gene22567:CDS 70.0%
CCAGAAGCAGCGGGCGGAGC+AGG + chr5.2:4189805-4189824 None:intergenic 75.0%
CCTGCTCCGCCCGCTGCTTC+TGG - chr5.2:4189802-4189821 MS.gene22567:CDS 75.0%
GAAGCAGCGGGCGGAGCAGG+TGG + chr5.2:4189802-4189821 None:intergenic 75.0%
! GCAGCGGGCGGAGCAGGTGG+TGG + chr5.2:4189799-4189818 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 4189217 4190182 4189217 ID=MS.gene22567
chr5.2 mRNA 4189217 4190182 4189217 ID=MS.gene22567.t1;Parent=MS.gene22567
chr5.2 exon 4189217 4190182 4189217 ID=MS.gene22567.t1.exon1;Parent=MS.gene22567.t1
chr5.2 CDS 4189217 4190182 4189217 ID=cds.MS.gene22567.t1;Parent=MS.gene22567.t1
Gene Sequence

>MS.gene22567

ATGGATCAAATAACATCACATGGACATTCACTTCCTCCACCTTTCCACACAGCAAGAGATCTTCATCTTCACCATCAACACCAACAGCAGCAACAACAGCACCATCAATTCCACACTTTACAGCAGCAACAACAAACAACAGATCAAGATGAACAAAGCGGAAGTAGCAGCGGCGGTGGACTCAACCTCACAAACCGAGAAGAAAACAGCAACAACAAGTTCAGCACAGAATTTAGCCCCAAGTTAGAATCCGGAGGAGGTGGTTCCGGTGGCGACACGGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAAAACAAACCAAAACCACCGATTATTATCACACGTGACAGCGCAAACGCCTTGAAAACTCATGTGATGGAGGTTGCAGACGGTTGCGACGTTGTTGAAAGTGTCAATAACTTTGCTAGACGCCGTCAAAGAGGCGTTTGCATCATGAGTGGGACAGGAACGGTTACAAACGTGACACTAAGGCAACCGGCTTCTCCTGGAGCTGTTGTTACACTTCATGGAAGGTTCGAGATTCTTTCGCTGGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGTTTGACCATATATTTAGCGGGCGGACAAGGGCAGGTTGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCTGTTGTTATTATGTCTGCTTCTTTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAAGATGATGATGGTTCCTCTATTCAACAACTTCAAGGTGGTGGTGGTGGTGGTTCTCCAAGTGGTGGTGGTGGTGTTCAGCAACAACAACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCTCCTCCTAATTCTAATCCTAATCTTAATCCTAATCTTCTCGGTCAGATGCCTTCTGATAATTTCTGGCCAACCGGTCGTTCTCCGTATTGA
Protein sequence

>MS.gene22567.t1

MDQITSHGHSLPPPFHTARDLHLHHQHQQQQQQHHQFHTLQQQQQTTDQDEQSGSSSGGGLNLTNREENSNNKFSTEFSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDDDGSSIQQLQGGGGGGSPSGGGGVQQQQQLLGDSTAPLFQAMPPPNSNPNLNPNLLGQMPSDNFWPTGRSPY