Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24828.t1 | XP_013458417.1 | 95.9 | 339 | 12 | 1 | 1 | 339 | 1 | 337 | 2.10E-187 | 664.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24828.t1 | Q9FEW9 | 73.1 | 327 | 85 | 1 | 16 | 339 | 7 | 333 | 2.7e-143 | 509.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24828.t1 | A0A072UTR0 | 95.9 | 339 | 12 | 1 | 1 | 339 | 1 | 337 | 1.5e-187 | 664.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051818 | MS.gene24828 | 0.983141 | 6.14E-157 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24828.t1 | MTR_4g125470 | 95.870 | 339 | 12 | 1 | 1 | 339 | 1 | 337 | 0.0 | 675 |
| MS.gene24828.t1 | MTR_5g006710 | 50.774 | 323 | 140 | 3 | 17 | 339 | 8 | 311 | 5.16e-117 | 343 |
| MS.gene24828.t1 | MTR_5g006800 | 50.765 | 327 | 148 | 3 | 13 | 339 | 4 | 317 | 3.24e-115 | 338 |
| MS.gene24828.t1 | MTR_5g006670 | 50.784 | 319 | 138 | 3 | 21 | 339 | 8 | 307 | 9.83e-115 | 337 |
| MS.gene24828.t1 | MTR_5g006740 | 50.779 | 321 | 141 | 5 | 21 | 339 | 8 | 313 | 3.78e-111 | 328 |
| MS.gene24828.t1 | MTR_5g006780 | 51.242 | 322 | 140 | 5 | 21 | 339 | 12 | 319 | 1.24e-110 | 327 |
| MS.gene24828.t1 | MTR_3g115600 | 51.534 | 326 | 139 | 5 | 14 | 338 | 3 | 310 | 4.57e-110 | 325 |
| MS.gene24828.t1 | MTR_5g006750 | 49.221 | 321 | 148 | 4 | 21 | 339 | 12 | 319 | 1.32e-107 | 319 |
| MS.gene24828.t1 | MTR_5g008040 | 49.843 | 319 | 147 | 4 | 21 | 339 | 14 | 319 | 6.69e-107 | 317 |
| MS.gene24828.t1 | MTR_5g006720 | 46.526 | 331 | 124 | 4 | 21 | 339 | 11 | 300 | 2.35e-96 | 290 |
| MS.gene24828.t1 | MTR_5g006740 | 47.664 | 321 | 134 | 6 | 21 | 339 | 8 | 296 | 4.94e-96 | 289 |
| MS.gene24828.t1 | MTR_5g006730 | 53.774 | 106 | 49 | 0 | 21 | 126 | 12 | 117 | 4.07e-39 | 135 |
| MS.gene24828.t1 | MTR_3g096570 | 73.770 | 61 | 16 | 0 | 186 | 246 | 8 | 68 | 2.82e-25 | 103 |
| MS.gene24828.t1 | MTR_3g096562 | 66.667 | 66 | 22 | 0 | 182 | 247 | 168 | 233 | 8.91e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24828.t1 | AT2G06050 | 72.372 | 333 | 88 | 2 | 11 | 339 | 2 | 334 | 0.0 | 508 |
| MS.gene24828.t1 | AT2G06050 | 72.372 | 333 | 88 | 2 | 11 | 339 | 2 | 334 | 0.0 | 508 |
| MS.gene24828.t1 | AT2G06050 | 72.372 | 333 | 88 | 2 | 11 | 339 | 2 | 334 | 0.0 | 508 |
| MS.gene24828.t1 | AT1G76690 | 49.080 | 326 | 153 | 3 | 14 | 339 | 7 | 319 | 7.40e-112 | 330 |
| MS.gene24828.t1 | AT1G76680 | 49.693 | 326 | 151 | 3 | 14 | 339 | 5 | 317 | 1.98e-110 | 326 |
| MS.gene24828.t1 | AT1G09400 | 48.562 | 313 | 142 | 3 | 27 | 339 | 1 | 294 | 9.72e-107 | 315 |
| MS.gene24828.t1 | AT1G76680 | 46.154 | 351 | 151 | 4 | 14 | 339 | 5 | 342 | 1.18e-104 | 313 |
| MS.gene24828.t1 | AT1G17990 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.79e-99 | 295 |
| MS.gene24828.t1 | AT1G18020 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.79e-99 | 295 |
| MS.gene24828.t1 | AT1G17990 | 51.172 | 256 | 110 | 3 | 18 | 273 | 6 | 246 | 3.36e-91 | 273 |
| MS.gene24828.t1 | AT1G09400 | 48.425 | 254 | 112 | 3 | 86 | 339 | 1 | 235 | 8.72e-83 | 252 |
Find 100 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAATCCTTGACTATTTC+TGG | 0.074699 | 8.4:-9433340 | None:intergenic |
| GTGGTTCGGGCCGTTGTTTC+TGG | 0.111017 | 8.4:+9433706 | MS.gene24828:CDS |
| TTCCTTTGTTCTAGCCTTCT+AGG | 0.181916 | 8.4:+9434547 | MS.gene24828:intron |
| TCCATCTCTCCCACTGCTTA+TGG | 0.186529 | 8.4:+9432115 | MS.gene24828:CDS |
| CGGGCCGTTGTTTCTGGTAT+TGG | 0.254686 | 8.4:+9433712 | MS.gene24828:CDS |
| CAACCTCGATATACAGCTTA+TGG | 0.287602 | 8.4:+9433886 | MS.gene24828:CDS |
| TCGATGCAGGTTCTTAATTC+AGG | 0.309680 | 8.4:+9433684 | MS.gene24828:CDS |
| GGTTCTTAATTCAGGTGGTT+CGG | 0.310782 | 8.4:+9433692 | MS.gene24828:CDS |
| GATTCTGATCCACTTGGATT+AGG | 0.315458 | 8.4:+9433790 | MS.gene24828:CDS |
| GGGTTTGGTTGTGGATGAAA+TGG | 0.321666 | 8.4:-9433233 | None:intergenic |
| CCACCTCTCTAGAAGGGGTT+TGG | 0.330917 | 8.4:-9433248 | None:intergenic |
| GTTCTTAATTCAGGTGGTTC+GGG | 0.333795 | 8.4:+9433693 | MS.gene24828:CDS |
| CCATCTCTCCCACTGCTTAT+GGG | 0.338294 | 8.4:+9432116 | MS.gene24828:CDS |
| CTCTAGAAGGGGTTTGGTTG+TGG | 0.342961 | 8.4:-9433242 | None:intergenic |
| TGTTCCTCTGAATAAATTCC+AGG | 0.349073 | 8.4:-9432910 | None:intergenic |
| GTTGGTCGTGCATCCCATTC+TGG | 0.363613 | 8.4:+9433006 | MS.gene24828:CDS |
| TTGAAGTTTGCAATCTTGTA+AGG | 0.367147 | 8.4:-9431877 | None:intergenic |
| TGTGCAGTGGTGGATATAAT+AGG | 0.370705 | 8.4:+9433986 | MS.gene24828:CDS |
| GTGGTAAGCGCTCGAGGCTC+CGG | 0.373825 | 8.4:-9433307 | None:intergenic |
| GGTGGATATAATAGGAAGTT+AGG | 0.374612 | 8.4:+9433994 | MS.gene24828:CDS |
| GAATTCTCCACCTCTCTAGA+AGG | 0.384447 | 8.4:-9433255 | None:intergenic |
| ATTGATCAATTCTTGAAAGA+TGG | 0.389055 | 8.4:+9433619 | MS.gene24828:CDS |
| CGCAGGTTTCCCCATGTACC+TGG | 0.393784 | 8.4:+9432892 | MS.gene24828:intron |
| GAACCTAAGAAAAGCTTATG+AGG | 0.420831 | 8.4:+9433954 | MS.gene24828:CDS |
| CTGAATAAATTCCAGGTACA+TGG | 0.427423 | 8.4:-9432903 | None:intergenic |
| GCATCATTGTGATCAATTGC+TGG | 0.434877 | 8.4:-9433763 | None:intergenic |
| TAATTAGTTCCCCACCTAGA+AGG | 0.440008 | 8.4:-9434561 | None:intergenic |
| AATGATCGAACAGACGAGTA+TGG | 0.441181 | 8.4:+9433646 | MS.gene24828:CDS |
| TATTCAGCAAGTGCTGCGTT+TGG | 0.442605 | 8.4:-9432043 | None:intergenic |
| AACGCTCTGCATCTCGTCAT+AGG | 0.445839 | 8.4:-9432010 | None:intergenic |
| ATTGGAGTGCAGGGTGGTGT+TGG | 0.449570 | 8.4:+9431985 | MS.gene24828:intron |
| GCTATTAATGCGATTCGAGC+AGG | 0.471945 | 8.4:+9433370 | MS.gene24828:CDS |
| TTGATCAATTCTTGAAAGAT+GGG | 0.478672 | 8.4:+9433620 | MS.gene24828:CDS |
| CTCAAGCCAGATGGTTCCTA+TGG | 0.479424 | 8.4:+9433277 | MS.gene24828:CDS |
| ACAAAAGATAATGCTGCCTT+TGG | 0.485408 | 8.4:-9432971 | None:intergenic |
| AGGTTGAGTAACATGAAGAT+AGG | 0.492670 | 8.4:-9433869 | None:intergenic |
| GAAACTGAGGTTACCAGAAT+GGG | 0.497238 | 8.4:-9433019 | None:intergenic |
| AGGCTCCGGGTATGCGCCAT+AGG | 0.499161 | 8.4:-9433293 | None:intergenic |
| GGTTTGGTTGTGGATGAAAT+GGG | 0.499316 | 8.4:-9433232 | None:intergenic |
| TTGATGGAGTCGAAATTCAC+GGG | 0.503324 | 8.4:+9433581 | MS.gene24828:CDS |
| CATCATTGTGATCAATTGCT+GGG | 0.505996 | 8.4:-9433762 | None:intergenic |
| TGAAACTGAGGTTACCAGAA+TGG | 0.512235 | 8.4:-9433020 | None:intergenic |
| TTTGATGGAGTCGAAATTCA+CGG | 0.512397 | 8.4:+9433580 | MS.gene24828:CDS |
| AGGAGAAAAGAGGGTGGTGC+TGG | 0.515328 | 8.4:-9431857 | None:intergenic |
| TGGTAAGCGCTCGAGGCTCC+GGG | 0.517375 | 8.4:-9433306 | None:intergenic |
| CCCATAAGCAGTGGGAGAGA+TGG | 0.517721 | 8.4:-9432116 | None:intergenic |
| CAATCTTGTAAGGAGAAAAG+AGG | 0.521873 | 8.4:-9431867 | None:intergenic |
| GAATCGCATTAATAGCTGAT+TGG | 0.525902 | 8.4:-9433363 | None:intergenic |
| GCTATTGATTCTGATCCACT+TGG | 0.530394 | 8.4:+9433784 | MS.gene24828:CDS |
| TATGCGCCATAGGAACCATC+TGG | 0.531081 | 8.4:-9433283 | None:intergenic |
| GTCGAAATTCACGGGGCACA+CGG | 0.533112 | 8.4:+9433589 | MS.gene24828:CDS |
| ACGAGATGCAGAGCGTTGAA+TGG | 0.535942 | 8.4:+9432016 | MS.gene24828:CDS |
| AATTCTCCACCTCTCTAGAA+GGG | 0.550426 | 8.4:-9433254 | None:intergenic |
| TCGAAATTCACGGGGCACAC+GGG | 0.550944 | 8.4:+9433590 | MS.gene24828:CDS |
| TGAATAAATTCCAGGTACAT+GGG | 0.553359 | 8.4:-9432902 | None:intergenic |
| TGGTTCCTATGGCGCATACC+CGG | 0.554696 | 8.4:+9433288 | MS.gene24828:CDS |
| GTATGACAAGGAAGAAGAAG+AGG | 0.555686 | 8.4:+9433918 | MS.gene24828:CDS |
| GAAATGGGTGCAGCACCACC+AGG | 0.555752 | 8.4:-9433217 | None:intergenic |
| CAGAGGAACAAGTGGAGGCA+TGG | 0.561445 | 8.4:+9432923 | MS.gene24828:CDS |
| GGTGGATTTCTCATCGGTGA+AGG | 0.575119 | 8.4:+9432088 | MS.gene24828:CDS |
| GATCACTTGAAAATCGATGC+AGG | 0.580483 | 8.4:+9433671 | MS.gene24828:CDS |
| ATTATATACCCATAAGCAGT+GGG | 0.587040 | 8.4:-9432124 | None:intergenic |
| ATGCAGGTTCTTAATTCAGG+TGG | 0.588415 | 8.4:+9433687 | MS.gene24828:CDS |
| TCAGAAGTGGTAAGCGCTCG+AGG | 0.590830 | 8.4:-9433313 | None:intergenic |
| ATATAATAGGAAGTTAGGAA+TGG | 0.592051 | 8.4:+9433999 | MS.gene24828:CDS |
| GGAATGGAAGCTGTAGCTCA+AGG | 0.592444 | 8.4:+9434015 | MS.gene24828:CDS |
| CCAAACCCCTTCTAGAGAGG+TGG | 0.592960 | 8.4:+9433248 | MS.gene24828:CDS |
| AGTTCAACAACACAAGTACA+AGG | 0.594788 | 8.4:+9431829 | MS.gene24828:CDS |
| TATTTCTGGTATCTCAGAAG+TGG | 0.602504 | 8.4:-9433326 | None:intergenic |
| TACGCTCAAAGATCAACTCC+AGG | 0.602812 | 8.4:+9432067 | MS.gene24828:CDS |
| GGAACATTCATGTGCAGTGG+TGG | 0.609749 | 8.4:+9433976 | MS.gene24828:CDS |
| TTATTCAGAGGAACAAGTGG+AGG | 0.610128 | 8.4:+9432918 | MS.gene24828:CDS |
| AATTTATTCAGAGGAACAAG+TGG | 0.610952 | 8.4:+9432915 | MS.gene24828:CDS |
| TTTCCATAAGCTGTATATCG+AGG | 0.611276 | 8.4:-9433889 | None:intergenic |
| ATAAGCAGTGGGAGAGATGG+AGG | 0.611650 | 8.4:-9432113 | None:intergenic |
| AAGAAGAGGCTCATTTGATG+AGG | 0.613862 | 8.4:+9433932 | MS.gene24828:CDS |
| CAACCAAACCCCTTCTAGAG+AGG | 0.615926 | 8.4:+9433245 | MS.gene24828:CDS |
| ATTCTCCACCTCTCTAGAAG+GGG | 0.617495 | 8.4:-9433253 | None:intergenic |
| AACCTAAGAAAAGCTTATGA+GGG | 0.618035 | 8.4:+9433955 | MS.gene24828:CDS |
| TGGAGAATTCTCAAGCCAGA+TGG | 0.619198 | 8.4:+9433268 | MS.gene24828:CDS |
| GGTATTGGAGCTGAAAGAGT+TGG | 0.624730 | 8.4:+9433727 | MS.gene24828:CDS |
| GAATAAATTCCAGGTACATG+GGG | 0.626230 | 8.4:-9432901 | None:intergenic |
| ACTCCAGGTGGATTTCTCAT+CGG | 0.631444 | 8.4:+9432082 | MS.gene24828:CDS |
| AATTATATACCCATAAGCAG+TGG | 0.632930 | 8.4:-9432125 | None:intergenic |
| ACTGCTAAGCCTAATCCAAG+TGG | 0.645958 | 8.4:-9433799 | None:intergenic |
| AGCTCCAATACCAGAAACAA+CGG | 0.648152 | 8.4:-9433716 | None:intergenic |
| TGTGAAGCAGTGTATCAGCC+TGG | 0.649524 | 8.4:+9433199 | MS.gene24828:intron |
| GTGGATGCTGCTCATGCCAA+AGG | 0.652152 | 8.4:+9432955 | MS.gene24828:CDS |
| GATCGAACAGACGAGTATGG+TGG | 0.652328 | 8.4:+9433649 | MS.gene24828:CDS |
| TGAGATACCAGAAATAGTCA+AGG | 0.658712 | 8.4:+9433333 | MS.gene24828:CDS |
| TGTACCTGGAATTTATTCAG+AGG | 0.660053 | 8.4:+9432906 | MS.gene24828:CDS |
| ATCATTGTGATCAATTGCTG+GGG | 0.663260 | 8.4:-9433761 | None:intergenic |
| TCACCGATGAGAAATCCACC+TGG | 0.665351 | 8.4:-9432085 | None:intergenic |
| AATCTTGTAAGGAGAAAAGA+GGG | 0.669109 | 8.4:-9431866 | None:intergenic |
| GGAGGCATGGAGAAATGTCG+TGG | 0.680628 | 8.4:+9432936 | MS.gene24828:CDS |
| GCTCAAAGATCAACTCCAGG+TGG | 0.683876 | 8.4:+9432070 | MS.gene24828:CDS |
| GAGGGAACATTCATGTGCAG+TGG | 0.698747 | 8.4:+9433973 | MS.gene24828:CDS |
| TGATGGAGTCGAAATTCACG+GGG | 0.717446 | 8.4:+9433582 | MS.gene24828:CDS |
| GAAGCAGTGTATCAGCCTGG+TGG | 0.735693 | 8.4:+9433202 | MS.gene24828:intron |
| CTTGTAAGGAGAAAAGAGGG+TGG | 0.760384 | 8.4:-9431863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGAAAATATTACATTA+TGG | + | chr8.4:9432844-9432863 | MS.gene24828:intron | 10.0% |
| !!! | AAATTTGGATTATTTTTTTA+AGG | - | chr8.4:9432296-9432315 | None:intergenic | 10.0% |
| !!! | TGTAATATTTTCATATATTT+AGG | - | chr8.4:9432841-9432860 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTACCATTT+TGG | + | chr8.4:9434251-9434270 | MS.gene24828:intron | 10.0% |
| !! | AAACAGTTATAAAGTAATAA+AGG | + | chr8.4:9432353-9432372 | MS.gene24828:intron | 15.0% |
| !! | AGTACATAAAACTAAATAAA+CGG | + | chr8.4:9432613-9432632 | MS.gene24828:intron | 15.0% |
| !! | ATACTGTATAAAAGAAATAT+AGG | + | chr8.4:9432430-9432449 | MS.gene24828:intron | 15.0% |
| !!! | ATAAAGTAATAAAGGTATAT+TGG | + | chr8.4:9432361-9432380 | MS.gene24828:intron | 15.0% |
| !!! | TATTTTCATATATTTAGGAT+TGG | - | chr8.4:9432836-9432855 | None:intergenic | 15.0% |
| !! | AAATAATATTATGTTGATGC+TGG | + | chr8.4:9432249-9432268 | MS.gene24828:intron | 20.0% |
| !! | AAATGTAATCTTATATATCG+TGG | + | chr8.4:9434328-9434347 | MS.gene24828:intron | 20.0% |
| !! | ACATTATGGTATTGTAATAT+AGG | + | chr8.4:9432858-9432877 | MS.gene24828:intron | 20.0% |
| !! | AGTAATTCCAAAATTACTAA+AGG | - | chr8.4:9434464-9434483 | None:intergenic | 20.0% |
| !! | ATACATCTAACAATCAAATT+TGG | - | chr8.4:9432311-9432330 | None:intergenic | 20.0% |
| !! | CATTATGGTATTGTAATATA+GGG | + | chr8.4:9432859-9432878 | MS.gene24828:intron | 20.0% |
| !! | GTAATTCCAAAATTACTAAA+GGG | - | chr8.4:9434463-9434482 | None:intergenic | 20.0% |
| !! | TGTATAAAAGAAATATAGGA+CGG | + | chr8.4:9432434-9432453 | MS.gene24828:intron | 20.0% |
| !!! | TTTATCCTTTGAAATTTGTA+AGG | - | chr8.4:9432406-9432425 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTCTGTTATTGT+GGG | + | chr8.4:9431936-9431955 | MS.gene24828:intron | 20.0% |
| ! | AAAGAAAAAGCTTGAAAAAG+AGG | - | chr8.4:9432151-9432170 | None:intergenic | 25.0% |
| ! | AGACACTGAATTATGAAAAT+TGG | - | chr8.4:9434490-9434509 | None:intergenic | 25.0% |
| ! | ATATAATAGGAAGTTAGGAA+TGG | + | chr8.4:9433999-9434018 | MS.gene24828:CDS | 25.0% |
| ! | ATTGATCAATTCTTGAAAGA+TGG | + | chr8.4:9433619-9433638 | MS.gene24828:CDS | 25.0% |
| ! | ATTGTCCTTACAAATTTCAA+AGG | + | chr8.4:9432398-9432417 | MS.gene24828:intron | 25.0% |
| ! | CAAAACATTCTCTTAAGATT+TGG | - | chr8.4:9434303-9434322 | None:intergenic | 25.0% |
| ! | CTCACAAACATAAAATAGTA+AGG | - | chr8.4:9433438-9433457 | None:intergenic | 25.0% |
| ! | GACATCAATGAATATAAGTT+AGG | - | chr8.4:9432202-9432221 | None:intergenic | 25.0% |
| ! | TATTTGTTTACATCTCTTCA+AGG | + | chr8.4:9433398-9433417 | MS.gene24828:intron | 25.0% |
| ! | TGTATGTTGGTATTTACTAT+TGG | + | chr8.4:9432326-9432345 | MS.gene24828:intron | 25.0% |
| ! | TTAAACCTTAAAACCAAATC+TGG | - | chr8.4:9434084-9434103 | None:intergenic | 25.0% |
| ! | TTCACAATTAAATCATTGAG+TGG | - | chr8.4:9433185-9433204 | None:intergenic | 25.0% |
| ! | TTGATCAATTCTTGAAAGAT+GGG | + | chr8.4:9433620-9433639 | MS.gene24828:CDS | 25.0% |
| ! | TTGTAATATAGGGAAATGTT+TGG | + | chr8.4:9432869-9432888 | MS.gene24828:intron | 25.0% |
| ! | TTTGATTGTTAGATGTATGT+TGG | + | chr8.4:9432313-9432332 | MS.gene24828:intron | 25.0% |
| !!! | GTTTTTTTTCTCTGTTATTG+TGG | + | chr8.4:9431935-9431954 | MS.gene24828:intron | 25.0% |
| AACCTAAGAAAAGCTTATGA+GGG | + | chr8.4:9433955-9433974 | MS.gene24828:CDS | 30.0% | |
| AATCTTGTAAGGAGAAAAGA+GGG | - | chr8.4:9431869-9431888 | None:intergenic | 30.0% | |
| AATTATATACCCATAAGCAG+TGG | - | chr8.4:9432128-9432147 | None:intergenic | 30.0% | |
| AATTTATTCAGAGGAACAAG+TGG | + | chr8.4:9432915-9432934 | MS.gene24828:CDS | 30.0% | |
| ATTATATACCCATAAGCAGT+GGG | - | chr8.4:9432127-9432146 | None:intergenic | 30.0% | |
| GAAGGAAAAACAACAATCAA+AGG | - | chr8.4:9434227-9434246 | None:intergenic | 30.0% | |
| GAATAGTACTAAAACCATGT+AGG | - | chr8.4:9432652-9432671 | None:intergenic | 30.0% | |
| TGAATAAATTCCAGGTACAT+GGG | - | chr8.4:9432905-9432924 | None:intergenic | 30.0% | |
| TTCGTACAACAAAACCAAAA+TGG | - | chr8.4:9434268-9434287 | None:intergenic | 30.0% | |
| TTGAAGTTTGCAATCTTGTA+AGG | - | chr8.4:9431880-9431899 | None:intergenic | 30.0% | |
| TTTCATCTCTAATCCAGATT+TGG | + | chr8.4:9434068-9434087 | MS.gene24828:intron | 30.0% | |
| ! | CAAACTTCAACTTTTCTCAT+AGG | + | chr8.4:9431890-9431909 | MS.gene24828:CDS | 30.0% |
| ! | GCATTATCTTTTGTCAGTTA+TGG | + | chr8.4:9432980-9432999 | MS.gene24828:CDS | 30.0% |
| ! | GTTTTCAATGCAGTTCATTA+AGG | - | chr8.4:9433072-9433091 | None:intergenic | 30.0% |
| !!! | CTAATCCAGATTTGGTTTTA+AGG | + | chr8.4:9434076-9434095 | MS.gene24828:intron | 30.0% |
| AACAATCTCCAAAAAGAGCT+TGG | + | chr8.4:9433835-9433854 | MS.gene24828:CDS | 35.0% | |
| AAGTTGCGACAAATGAATCA+AGG | - | chr8.4:9432533-9432552 | None:intergenic | 35.0% | |
| ACAAAAGATAATGCTGCCTT+TGG | - | chr8.4:9432974-9432993 | None:intergenic | 35.0% | |
| ACTATGATCTGATGTGGTTA+TGG | + | chr8.4:9431961-9431980 | MS.gene24828:intron | 35.0% | |
| AGGTTGAGTAACATGAAGAT+AGG | - | chr8.4:9433872-9433891 | None:intergenic | 35.0% | |
| AGTTCAACAACACAAGTACA+AGG | + | chr8.4:9431829-9431848 | MS.gene24828:CDS | 35.0% | |
| AGTTGCGACAAATGAATCAA+GGG | - | chr8.4:9432532-9432551 | None:intergenic | 35.0% | |
| ATCAACGACAAAAAGAACAC+AGG | - | chr8.4:9432730-9432749 | None:intergenic | 35.0% | |
| ATCATTGTGATCAATTGCTG+GGG | - | chr8.4:9433764-9433783 | None:intergenic | 35.0% | |
| ATCTGATGTGGTTATGGTAT+TGG | + | chr8.4:9431967-9431986 | MS.gene24828:intron | 35.0% | |
| ATGAAATGAGACGTACATAC+AGG | + | chr8.4:9433556-9433575 | MS.gene24828:intron | 35.0% | |
| CAATCTTGTAAGGAGAAAAG+AGG | - | chr8.4:9431870-9431889 | None:intergenic | 35.0% | |
| CACATGACAAAAAGAAACTC+CGG | - | chr8.4:9432564-9432583 | None:intergenic | 35.0% | |
| CATCATTGTGATCAATTGCT+GGG | - | chr8.4:9433765-9433784 | None:intergenic | 35.0% | |
| CGATAATCCTTGACTATTTC+TGG | - | chr8.4:9433343-9433362 | None:intergenic | 35.0% | |
| CTGAATAAATTCCAGGTACA+TGG | - | chr8.4:9432906-9432925 | None:intergenic | 35.0% | |
| GAACCTAAGAAAAGCTTATG+AGG | + | chr8.4:9433954-9433973 | MS.gene24828:CDS | 35.0% | |
| GAATAAATTCCAGGTACATG+GGG | - | chr8.4:9432904-9432923 | None:intergenic | 35.0% | |
| GAATCGCATTAATAGCTGAT+TGG | - | chr8.4:9433366-9433385 | None:intergenic | 35.0% | |
| GGTGGATATAATAGGAAGTT+AGG | + | chr8.4:9433994-9434013 | MS.gene24828:CDS | 35.0% | |
| GTCAAACAAAAAGTCCTACA+TGG | + | chr8.4:9432635-9432654 | MS.gene24828:intron | 35.0% | |
| TGAGATACCAGAAATAGTCA+AGG | + | chr8.4:9433333-9433352 | MS.gene24828:CDS | 35.0% | |
| TGGAAAAACTGAGTATGACA+AGG | + | chr8.4:9433906-9433925 | MS.gene24828:CDS | 35.0% | |
| TGTACCTGGAATTTATTCAG+AGG | + | chr8.4:9432906-9432925 | MS.gene24828:CDS | 35.0% | |
| TGTTCCTCTGAATAAATTCC+AGG | - | chr8.4:9432913-9432932 | None:intergenic | 35.0% | |
| TTAAACACAATCAGCCTCAT+TGG | - | chr8.4:9432687-9432706 | None:intergenic | 35.0% | |
| TTCCTGTTATACTTGTTCAG+AGG | - | chr8.4:9434117-9434136 | None:intergenic | 35.0% | |
| TTTCCATAAGCTGTATATCG+AGG | - | chr8.4:9433892-9433911 | None:intergenic | 35.0% | |
| TTTGATGGAGTCGAAATTCA+CGG | + | chr8.4:9433580-9433599 | MS.gene24828:CDS | 35.0% | |
| TTTGGTGAGGAAAGGATAAT+CGG | - | chr8.4:9434175-9434194 | None:intergenic | 35.0% | |
| ! | CATGCATCTGATTTTGTCAA+TGG | + | chr8.4:9432499-9432518 | MS.gene24828:intron | 35.0% |
| ! | CATTTAGGATAGTGAAACTG+AGG | - | chr8.4:9433035-9433054 | None:intergenic | 35.0% |
| ! | CTACAGCCCTTTAGTAATTT+TGG | + | chr8.4:9434454-9434473 | MS.gene24828:intron | 35.0% |
| ! | GATGAACTTGTGAAGCATTT+AGG | - | chr8.4:9433050-9433069 | None:intergenic | 35.0% |
| ! | GTTTTCTACCAAGCTCTTTT+TGG | - | chr8.4:9433846-9433865 | None:intergenic | 35.0% |
| ! | TTCCCTCATAAGCTTTTCTT+AGG | - | chr8.4:9433960-9433979 | None:intergenic | 35.0% |
| ! | TTTTGTCAGTTATGGCATGT+TGG | + | chr8.4:9432988-9433007 | MS.gene24828:CDS | 35.0% |
| !! | GATGCTGATTTGGTATCATT+TGG | + | chr8.4:9434039-9434058 | MS.gene24828:intron | 35.0% |
| !! | TATTTCTGGTATCTCAGAAG+TGG | - | chr8.4:9433329-9433348 | None:intergenic | 35.0% |
| !!! | GGTTTTGTTGTACGAACAAT+TGG | + | chr8.4:9434272-9434291 | MS.gene24828:intron | 35.0% |
| AAGAAGAGGCTCATTTGATG+AGG | + | chr8.4:9433932-9433951 | MS.gene24828:CDS | 40.0% | |
| AATGATCGAACAGACGAGTA+TGG | + | chr8.4:9433646-9433665 | MS.gene24828:CDS | 40.0% | |
| AGCTCCAATACCAGAAACAA+CGG | - | chr8.4:9433719-9433738 | None:intergenic | 40.0% | |
| ATGCAGGTTCTTAATTCAGG+TGG | + | chr8.4:9433687-9433706 | MS.gene24828:CDS | 40.0% | |
| CAACCTCGATATACAGCTTA+TGG | + | chr8.4:9433886-9433905 | MS.gene24828:CDS | 40.0% | |
| CTCCTCTGAACAAGTATAAC+AGG | + | chr8.4:9434112-9434131 | MS.gene24828:intron | 40.0% | |
| CTCTTGAGTCTCATTTCCTT+TGG | - | chr8.4:9434193-9434212 | None:intergenic | 40.0% | |
| GAAACTGAGGTTACCAGAAT+GGG | - | chr8.4:9433022-9433041 | None:intergenic | 40.0% | |
| GATCACTTGAAAATCGATGC+AGG | + | chr8.4:9433671-9433690 | MS.gene24828:CDS | 40.0% | |
| GATTATCCTTTCCTCACCAA+AGG | + | chr8.4:9434174-9434193 | MS.gene24828:intron | 40.0% | |
| GATTCTGATCCACTTGGATT+AGG | + | chr8.4:9433790-9433809 | MS.gene24828:CDS | 40.0% | |
| GCATCATTGTGATCAATTGC+TGG | - | chr8.4:9433766-9433785 | None:intergenic | 40.0% | |
| GGTTCTTAATTCAGGTGGTT+CGG | + | chr8.4:9433692-9433711 | MS.gene24828:CDS | 40.0% | |
| GTATGACAAGGAAGAAGAAG+AGG | + | chr8.4:9433918-9433937 | MS.gene24828:CDS | 40.0% | |
| GTTCTTAATTCAGGTGGTTC+GGG | + | chr8.4:9433693-9433712 | MS.gene24828:CDS | 40.0% | |
| TAATCGGTGTAGCCAATAAC+AGG | - | chr8.4:9434159-9434178 | None:intergenic | 40.0% | |
| TACACACAGGATCCTGTTAT+TGG | + | chr8.4:9434144-9434163 | MS.gene24828:intron | 40.0% | |
| TCATTTCCTTTGGTGAGGAA+AGG | - | chr8.4:9434183-9434202 | None:intergenic | 40.0% | |
| TCGATGCAGGTTCTTAATTC+AGG | + | chr8.4:9433684-9433703 | MS.gene24828:CDS | 40.0% | |
| TGAAACTGAGGTTACCAGAA+TGG | - | chr8.4:9433023-9433042 | None:intergenic | 40.0% | |
| TTATTCAGAGGAACAAGTGG+AGG | + | chr8.4:9432918-9432937 | MS.gene24828:CDS | 40.0% | |
| TTGATGGAGTCGAAATTCAC+GGG | + | chr8.4:9433581-9433600 | MS.gene24828:CDS | 40.0% | |
| ! | AATTCTCCACCTCTCTAGAA+GGG | - | chr8.4:9433257-9433276 | None:intergenic | 40.0% |
| ! | CAGGAAGACATTTTACACAC+AGG | + | chr8.4:9434131-9434150 | MS.gene24828:intron | 40.0% |
| ! | CATCTGATTTTGTCAATGGC+CGG | + | chr8.4:9432503-9432522 | MS.gene24828:intron | 40.0% |
| ! | GGTTTGGTTGTGGATGAAAT+GGG | - | chr8.4:9433235-9433254 | None:intergenic | 40.0% |
| ! | TGTCGCAACTTCTTTTTGAC+CGG | + | chr8.4:9432542-9432561 | MS.gene24828:intron | 40.0% |
| !! | GACGTACATACAGGTTTTGA+TGG | + | chr8.4:9433565-9433584 | MS.gene24828:intron | 40.0% |
| !! | GCTATTGATTCTGATCCACT+TGG | + | chr8.4:9433784-9433803 | MS.gene24828:CDS | 40.0% |
| !! | TGTGCAGTGGTGGATATAAT+AGG | + | chr8.4:9433986-9434005 | MS.gene24828:CDS | 40.0% |
| ACAAATGAATCAAGGGTGGC+CGG | - | chr8.4:9432525-9432544 | None:intergenic | 45.0% | |
| ACACAATCAGCCTCATTGGT+TGG | - | chr8.4:9432683-9432702 | None:intergenic | 45.0% | |
| ACTGCTAAGCCTAATCCAAG+TGG | - | chr8.4:9433802-9433821 | None:intergenic | 45.0% | |
| ATACTCGTGTTGCATCTGCA+CGG | + | chr8.4:9433482-9433501 | MS.gene24828:intron | 45.0% | |
| CTTGTAAGGAGAAAAGAGGG+TGG | - | chr8.4:9431866-9431885 | None:intergenic | 45.0% | |
| GAATTCTCCACCTCTCTAGA+AGG | - | chr8.4:9433258-9433277 | None:intergenic | 45.0% | |
| GAGTCTCATTTCCTTTGGTG+AGG | - | chr8.4:9434188-9434207 | None:intergenic | 45.0% | |
| GCTATTAATGCGATTCGAGC+AGG | + | chr8.4:9433370-9433389 | MS.gene24828:CDS | 45.0% | |
| TACGCTCAAAGATCAACTCC+AGG | + | chr8.4:9432067-9432086 | MS.gene24828:CDS | 45.0% | |
| TATAGGGAAATGTTTGGCGC+AGG | + | chr8.4:9432875-9432894 | MS.gene24828:intron | 45.0% | |
| TCTATCGCTACCAACCAATG+AGG | + | chr8.4:9432670-9432689 | MS.gene24828:intron | 45.0% | |
| TGATGGAGTCGAAATTCACG+GGG | + | chr8.4:9433582-9433601 | MS.gene24828:CDS | 45.0% | |
| TGCGACAAATGAATCAAGGG+TGG | - | chr8.4:9432529-9432548 | None:intergenic | 45.0% | |
| TGGAGAATTCTCAAGCCAGA+TGG | + | chr8.4:9433268-9433287 | MS.gene24828:CDS | 45.0% | |
| TGGGTGACTATGATCTGATG+TGG | + | chr8.4:9431955-9431974 | MS.gene24828:intron | 45.0% | |
| TTCAGTGTCTGTCAAGACTC+AGG | + | chr8.4:9434500-9434519 | MS.gene24828:intron | 45.0% | |
| ! | ACTCCAGGTGGATTTCTCAT+CGG | + | chr8.4:9432082-9432101 | MS.gene24828:CDS | 45.0% |
| ! | AGCTCAAGGTGATGCTGATT+TGG | + | chr8.4:9434029-9434048 | MS.gene24828:intron | 45.0% |
| ! | ATTCTCCACCTCTCTAGAAG+GGG | - | chr8.4:9433256-9433275 | None:intergenic | 45.0% |
| ! | GGGTTTGGTTGTGGATGAAA+TGG | - | chr8.4:9433236-9433255 | None:intergenic | 45.0% |
| ! | GGTATTGGAGCTGAAAGAGT+TGG | + | chr8.4:9433727-9433746 | MS.gene24828:CDS | 45.0% |
| ! | GGTTATGGTATTGGAGTGCA+GGG | + | chr8.4:9431976-9431995 | MS.gene24828:intron | 45.0% |
| ! | TATTCAGCAAGTGCTGCGTT+TGG | - | chr8.4:9432046-9432065 | None:intergenic | 45.0% |
| ! | TGGTTATGGTATTGGAGTGC+AGG | + | chr8.4:9431975-9431994 | MS.gene24828:intron | 45.0% |
| !! | TAAAAAAAAAAAAAAAAAGA+AGG | - | chr8.4:9434245-9434264 | None:intergenic | 5.0% |
| AACGCTCTGCATCTCGTCAT+AGG | - | chr8.4:9432013-9432032 | None:intergenic | 50.0% | |
| ATAAGCAGTGGGAGAGATGG+AGG | - | chr8.4:9432116-9432135 | None:intergenic | 50.0% | |
| CCATCTCTCCCACTGCTTAT+GGG | + | chr8.4:9432116-9432135 | MS.gene24828:CDS | 50.0% | |
| CTCAAGCCAGATGGTTCCTA+TGG | + | chr8.4:9433277-9433296 | MS.gene24828:CDS | 50.0% | |
| GAGGGAACATTCATGTGCAG+TGG | + | chr8.4:9433973-9433992 | MS.gene24828:CDS | 50.0% | |
| GATCGAACAGACGAGTATGG+TGG | + | chr8.4:9433649-9433668 | MS.gene24828:CDS | 50.0% | |
| GCTCAAAGATCAACTCCAGG+TGG | + | chr8.4:9432070-9432089 | MS.gene24828:CDS | 50.0% | |
| GGAACATTCATGTGCAGTGG+TGG | + | chr8.4:9433976-9433995 | MS.gene24828:CDS | 50.0% | |
| GGAATGGAAGCTGTAGCTCA+AGG | + | chr8.4:9434015-9434034 | MS.gene24828:CDS | 50.0% | |
| GTGCAGATGCAACACGAGTA+TGG | - | chr8.4:9433483-9433502 | None:intergenic | 50.0% | |
| TACTCGTGTTGCATCTGCAC+GGG | + | chr8.4:9433483-9433502 | MS.gene24828:intron | 50.0% | |
| TATGCGCCATAGGAACCATC+TGG | - | chr8.4:9433286-9433305 | None:intergenic | 50.0% | |
| TCACCGATGAGAAATCCACC+TGG | - | chr8.4:9432088-9432107 | None:intergenic | 50.0% | |
| TCCATCTCTCCCACTGCTTA+TGG | + | chr8.4:9432115-9432134 | MS.gene24828:CDS | 50.0% | |
| TGTGAAGCAGTGTATCAGCC+TGG | + | chr8.4:9433199-9433218 | MS.gene24828:intron | 50.0% | |
| TGTTGCATCTGCACGGGTAT+GGG | + | chr8.4:9433489-9433508 | MS.gene24828:intron | 50.0% | |
| ! | CAACCAAACCCCTTCTAGAG+AGG | + | chr8.4:9433245-9433264 | MS.gene24828:CDS | 50.0% |
| ! | CTCTAGAAGGGGTTTGGTTG+TGG | - | chr8.4:9433245-9433264 | None:intergenic | 50.0% |
| ! | GGTGGATTTCTCATCGGTGA+AGG | + | chr8.4:9432088-9432107 | MS.gene24828:CDS | 50.0% |
| ! | TATGGTATTGGAGTGCAGGG+TGG | + | chr8.4:9431979-9431998 | MS.gene24828:intron | 50.0% |
| !! | ACGAGATGCAGAGCGTTGAA+TGG | + | chr8.4:9432016-9432035 | MS.gene24828:CDS | 50.0% |
| AGGAGAAAAGAGGGTGGTGC+TGG | - | chr8.4:9431860-9431879 | None:intergenic | 55.0% | |
| ATTGGAGTGCAGGGTGGTGT+TGG | + | chr8.4:9431985-9432004 | MS.gene24828:intron | 55.0% | |
| CAGAGGAACAAGTGGAGGCA+TGG | + | chr8.4:9432923-9432942 | MS.gene24828:CDS | 55.0% | |
| CCCATAAGCAGTGGGAGAGA+TGG | - | chr8.4:9432119-9432138 | None:intergenic | 55.0% | |
| GAAGCAGTGTATCAGCCTGG+TGG | + | chr8.4:9433202-9433221 | MS.gene24828:intron | 55.0% | |
| GTCGAAATTCACGGGGCACA+CGG | + | chr8.4:9433589-9433608 | MS.gene24828:CDS | 55.0% | |
| GTGGATGCTGCTCATGCCAA+AGG | + | chr8.4:9432955-9432974 | MS.gene24828:CDS | 55.0% | |
| GTGTTGCATCTGCACGGGTA+TGG | + | chr8.4:9433488-9433507 | MS.gene24828:intron | 55.0% | |
| GTTGGTCGTGCATCCCATTC+TGG | + | chr8.4:9433006-9433025 | MS.gene24828:CDS | 55.0% | |
| TCAGAAGTGGTAAGCGCTCG+AGG | - | chr8.4:9433316-9433335 | None:intergenic | 55.0% | |
| TCGAAATTCACGGGGCACAC+GGG | + | chr8.4:9433590-9433609 | MS.gene24828:CDS | 55.0% | |
| TGGTTCCTATGGCGCATACC+CGG | + | chr8.4:9433288-9433307 | MS.gene24828:CDS | 55.0% | |
| ! | CCAAACCCCTTCTAGAGAGG+TGG | + | chr8.4:9433248-9433267 | MS.gene24828:CDS | 55.0% |
| ! | CCACCTCTCTAGAAGGGGTT+TGG | - | chr8.4:9433251-9433270 | None:intergenic | 55.0% |
| ! | GGAGGCATGGAGAAATGTCG+TGG | + | chr8.4:9432936-9432955 | MS.gene24828:CDS | 55.0% |
| !! | CGGGCCGTTGTTTCTGGTAT+TGG | + | chr8.4:9433712-9433731 | MS.gene24828:CDS | 55.0% |
| CGCAGGTTTCCCCATGTACC+TGG | + | chr8.4:9432892-9432911 | MS.gene24828:intron | 60.0% | |
| GAAATGGGTGCAGCACCACC+AGG | - | chr8.4:9433220-9433239 | None:intergenic | 60.0% | |
| ! | GTGGTTCGGGCCGTTGTTTC+TGG | + | chr8.4:9433706-9433725 | MS.gene24828:CDS | 60.0% |
| AGGCTCCGGGTATGCGCCAT+AGG | - | chr8.4:9433296-9433315 | None:intergenic | 65.0% | |
| GTGGTAAGCGCTCGAGGCTC+CGG | - | chr8.4:9433310-9433329 | None:intergenic | 65.0% | |
| TGGTAAGCGCTCGAGGCTCC+GGG | - | chr8.4:9433309-9433328 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 9431808 | 9434568 | 9431808 | ID=MS.gene24828 |
| chr8.4 | mRNA | 9431808 | 9434568 | 9431808 | ID=MS.gene24828.t1;Parent=MS.gene24828 |
| chr8.4 | exon | 9431808 | 9431911 | 9431808 | ID=MS.gene24828.t1.exon1;Parent=MS.gene24828.t1 |
| chr8.4 | CDS | 9431808 | 9431911 | 9431808 | ID=cds.MS.gene24828.t1;Parent=MS.gene24828.t1 |
| chr8.4 | exon | 9431997 | 9432137 | 9431997 | ID=MS.gene24828.t1.exon2;Parent=MS.gene24828.t1 |
| chr8.4 | CDS | 9431997 | 9432137 | 9431997 | ID=cds.MS.gene24828.t1;Parent=MS.gene24828.t1 |
| chr8.4 | exon | 9432897 | 9433027 | 9432897 | ID=MS.gene24828.t1.exon3;Parent=MS.gene24828.t1 |
| chr8.4 | CDS | 9432897 | 9433027 | 9432897 | ID=cds.MS.gene24828.t1;Parent=MS.gene24828.t1 |
| chr8.4 | exon | 9433209 | 9433391 | 9433209 | ID=MS.gene24828.t1.exon4;Parent=MS.gene24828.t1 |
| chr8.4 | CDS | 9433209 | 9433391 | 9433209 | ID=cds.MS.gene24828.t1;Parent=MS.gene24828.t1 |
| chr8.4 | exon | 9433578 | 9434036 | 9433578 | ID=MS.gene24828.t1.exon5;Parent=MS.gene24828.t1 |
| chr8.4 | CDS | 9433578 | 9434036 | 9433578 | ID=cds.MS.gene24828.t1;Parent=MS.gene24828.t1 |
| chr8.4 | exon | 9434561 | 9434568 | 9434561 | ID=MS.gene24828.t1.exon6;Parent=MS.gene24828.t1 |
| chr8.4 | CDS | 9434561 | 9434568 | 9434561 | ID=cds.MS.gene24828.t1;Parent=MS.gene24828.t1 |
| Gene Sequence |
| Protein sequence |
