Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051818.t1 | XP_013458417.1 | 95.9 | 345 | 12 | 1 | 1 | 345 | 1 | 343 | 5.40E-191 | 676.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051818.t1 | Q9FEW9 | 73.6 | 333 | 85 | 1 | 16 | 345 | 7 | 339 | 6.9e-147 | 521.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051818.t1 | A0A072UTR0 | 95.9 | 345 | 12 | 1 | 1 | 345 | 1 | 343 | 3.9e-191 | 676.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051818 | MS.gene24828 | 0.983141 | 6.14E-157 | -1.69E-46 |
| MS.gene051818 | MS.gene26506 | 0.931634 | 2.83E-94 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051818.t1 | MTR_4g125470 | 95.942 | 345 | 12 | 1 | 1 | 345 | 1 | 343 | 0.0 | 687 |
| MS.gene051818.t1 | MTR_5g006710 | 51.064 | 329 | 142 | 3 | 17 | 345 | 8 | 317 | 1.26e-119 | 350 |
| MS.gene051818.t1 | MTR_5g006800 | 51.051 | 333 | 150 | 3 | 13 | 345 | 4 | 323 | 1.30e-117 | 345 |
| MS.gene051818.t1 | MTR_5g006670 | 51.077 | 325 | 140 | 3 | 21 | 345 | 8 | 313 | 4.64e-117 | 343 |
| MS.gene051818.t1 | MTR_5g006740 | 50.765 | 327 | 144 | 5 | 21 | 345 | 8 | 319 | 2.62e-113 | 333 |
| MS.gene051818.t1 | MTR_5g006780 | 51.524 | 328 | 142 | 5 | 21 | 345 | 12 | 325 | 3.71e-113 | 333 |
| MS.gene051818.t1 | MTR_3g115600 | 51.652 | 333 | 142 | 5 | 14 | 345 | 3 | 317 | 1.65e-112 | 332 |
| MS.gene051818.t1 | MTR_5g006750 | 49.235 | 327 | 151 | 4 | 21 | 345 | 12 | 325 | 2.79e-109 | 323 |
| MS.gene051818.t1 | MTR_5g008040 | 49.846 | 325 | 150 | 4 | 21 | 345 | 14 | 325 | 5.18e-109 | 323 |
| MS.gene051818.t1 | MTR_5g006740 | 47.706 | 327 | 137 | 6 | 21 | 345 | 8 | 302 | 2.18e-98 | 295 |
| MS.gene051818.t1 | MTR_5g006720 | 46.588 | 337 | 127 | 4 | 21 | 345 | 11 | 306 | 2.82e-98 | 295 |
| MS.gene051818.t1 | MTR_5g006730 | 53.774 | 106 | 49 | 0 | 21 | 126 | 12 | 117 | 3.46e-39 | 135 |
| MS.gene051818.t1 | MTR_3g096570 | 72.581 | 62 | 17 | 0 | 186 | 247 | 8 | 69 | 2.81e-25 | 103 |
| MS.gene051818.t1 | MTR_3g096562 | 66.667 | 66 | 22 | 0 | 182 | 247 | 168 | 233 | 9.17e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051818.t1 | AT2G06050 | 72.861 | 339 | 88 | 2 | 11 | 345 | 2 | 340 | 0.0 | 520 |
| MS.gene051818.t1 | AT2G06050 | 72.861 | 339 | 88 | 2 | 11 | 345 | 2 | 340 | 0.0 | 520 |
| MS.gene051818.t1 | AT2G06050 | 72.861 | 339 | 88 | 2 | 11 | 345 | 2 | 340 | 0.0 | 520 |
| MS.gene051818.t1 | AT1G76690 | 49.398 | 332 | 155 | 3 | 14 | 345 | 7 | 325 | 1.17e-114 | 337 |
| MS.gene051818.t1 | AT1G76680 | 50.000 | 332 | 153 | 3 | 14 | 345 | 5 | 323 | 5.10e-113 | 333 |
| MS.gene051818.t1 | AT1G09400 | 48.903 | 319 | 144 | 3 | 27 | 345 | 1 | 300 | 1.49e-109 | 323 |
| MS.gene051818.t1 | AT1G76680 | 46.499 | 357 | 153 | 4 | 14 | 345 | 5 | 348 | 1.79e-107 | 320 |
| MS.gene051818.t1 | AT1G17990 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.97e-99 | 295 |
| MS.gene051818.t1 | AT1G18020 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.97e-99 | 295 |
| MS.gene051818.t1 | AT1G17990 | 51.172 | 256 | 110 | 3 | 18 | 273 | 6 | 246 | 5.46e-91 | 273 |
| MS.gene051818.t1 | AT1G09400 | 48.846 | 260 | 114 | 3 | 86 | 345 | 1 | 241 | 2.25e-85 | 259 |
Find 99 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAATCCTTGACTATTTC+TGG | 0.074699 | 8.2:-7245841 | None:intergenic |
| GTGGTTCGGGCCGTTGTTTC+TGG | 0.111017 | 8.2:+7246207 | MS.gene051818:CDS |
| TCCATCTCTCCCACTGCTTA+TGG | 0.186529 | 8.2:+7244616 | MS.gene051818:CDS |
| CGGGCCGTTGTTTCTGGTAT+TGG | 0.254686 | 8.2:+7246213 | MS.gene051818:CDS |
| CAACCTCGATATACAGCTTA+TGG | 0.287602 | 8.2:+7246387 | MS.gene051818:CDS |
| TCGATGCAGGTTCTTAATTC+AGG | 0.309680 | 8.2:+7246185 | MS.gene051818:CDS |
| GGTTCTTAATTCAGGTGGTT+CGG | 0.310782 | 8.2:+7246193 | MS.gene051818:CDS |
| GATTCTGATCCACTTGGATT+AGG | 0.315458 | 8.2:+7246291 | MS.gene051818:CDS |
| GGGTTTGGTTGTGGATGAAA+TGG | 0.321666 | 8.2:-7245734 | None:intergenic |
| CCACCTCTCTAGAAGGGGTT+TGG | 0.330917 | 8.2:-7245749 | None:intergenic |
| GTTCTTAATTCAGGTGGTTC+GGG | 0.333795 | 8.2:+7246194 | MS.gene051818:CDS |
| CCATCTCTCCCACTGCTTAT+GGG | 0.338294 | 8.2:+7244617 | MS.gene051818:CDS |
| CTCTAGAAGGGGTTTGGTTG+TGG | 0.342961 | 8.2:-7245743 | None:intergenic |
| TGTTCCTCTGAATAAATTCC+AGG | 0.349073 | 8.2:-7245411 | None:intergenic |
| GTTGGTCGTGCATCCCATTC+TGG | 0.363613 | 8.2:+7245507 | MS.gene051818:CDS |
| TTGAAGTTTGCAATCTTGTA+AGG | 0.367147 | 8.2:-7244378 | None:intergenic |
| TGTGCAGTGGTGGATATAAT+AGG | 0.370705 | 8.2:+7246487 | MS.gene051818:CDS |
| GTGGTAAGCGCTCGAGGCTC+CGG | 0.373825 | 8.2:-7245808 | None:intergenic |
| GGTGGATATAATAGGAAGTT+AGG | 0.374612 | 8.2:+7246495 | MS.gene051818:CDS |
| AGCTCAAGGTGATGCTGATT+TGG | 0.377196 | 8.2:+7246530 | MS.gene051818:CDS |
| GAATTCTCCACCTCTCTAGA+AGG | 0.384447 | 8.2:-7245756 | None:intergenic |
| ATTGATCAATTCTTGAAAGA+TGG | 0.389055 | 8.2:+7246120 | MS.gene051818:CDS |
| CGCAGGTTTCCCCATGTACC+TGG | 0.393784 | 8.2:+7245393 | MS.gene051818:intron |
| GAACCTAAGAAAAGCTTATG+AGG | 0.420831 | 8.2:+7246455 | MS.gene051818:CDS |
| CTGAATAAATTCCAGGTACA+TGG | 0.427423 | 8.2:-7245404 | None:intergenic |
| GCATCATTGTGATCAATTGC+TGG | 0.434877 | 8.2:-7246264 | None:intergenic |
| AATGATCGAACAGACGAGTA+TGG | 0.441181 | 8.2:+7246147 | MS.gene051818:CDS |
| TATTCAGCAAGTGCTGCGTT+TGG | 0.442605 | 8.2:-7244544 | None:intergenic |
| AACGCTCTGCATCTCGTCAT+AGG | 0.445839 | 8.2:-7244511 | None:intergenic |
| ATTGGAGTGCAGGGTGGTGT+TGG | 0.449570 | 8.2:+7244486 | MS.gene051818:intron |
| GCTATTAATGCGATTCGAGC+AGG | 0.471945 | 8.2:+7245871 | MS.gene051818:CDS |
| TTGATCAATTCTTGAAAGAT+GGG | 0.478672 | 8.2:+7246121 | MS.gene051818:CDS |
| CTCAAGCCAGATGGTTCCTA+TGG | 0.479424 | 8.2:+7245778 | MS.gene051818:CDS |
| ACAAAAGATAATGCTGCCTT+TGG | 0.485408 | 8.2:-7245472 | None:intergenic |
| AGGTTGAGTAACATGAAGAT+AGG | 0.492670 | 8.2:-7246370 | None:intergenic |
| GAAACTGAGGTTACCAGAAT+GGG | 0.497238 | 8.2:-7245520 | None:intergenic |
| AGGCTCCGGGTATGCGCCAT+AGG | 0.499161 | 8.2:-7245794 | None:intergenic |
| GGTTTGGTTGTGGATGAAAT+GGG | 0.499316 | 8.2:-7245733 | None:intergenic |
| TTGATGGAGTCGAAATTCAC+GGG | 0.503324 | 8.2:+7246082 | MS.gene051818:CDS |
| CATCATTGTGATCAATTGCT+GGG | 0.505996 | 8.2:-7246263 | None:intergenic |
| TGAAACTGAGGTTACCAGAA+TGG | 0.512235 | 8.2:-7245521 | None:intergenic |
| TTTGATGGAGTCGAAATTCA+CGG | 0.512397 | 8.2:+7246081 | MS.gene051818:CDS |
| AGGAGAAAAGAGGGTGGTGC+TGG | 0.515328 | 8.2:-7244358 | None:intergenic |
| TGGTAAGCGCTCGAGGCTCC+GGG | 0.517375 | 8.2:-7245807 | None:intergenic |
| CCCATAAGCAGTGGGAGAGA+TGG | 0.517721 | 8.2:-7244617 | None:intergenic |
| CAATCTTGTAAGGAGAAAAG+AGG | 0.521873 | 8.2:-7244368 | None:intergenic |
| GAATCGCATTAATAGCTGAT+TGG | 0.525902 | 8.2:-7245864 | None:intergenic |
| GCTATTGATTCTGATCCACT+TGG | 0.530394 | 8.2:+7246285 | MS.gene051818:CDS |
| TATGCGCCATAGGAACCATC+TGG | 0.531081 | 8.2:-7245784 | None:intergenic |
| GTCGAAATTCACGGGGCACA+CGG | 0.533112 | 8.2:+7246090 | MS.gene051818:CDS |
| ACGAGATGCAGAGCGTTGAA+TGG | 0.535942 | 8.2:+7244517 | MS.gene051818:CDS |
| AATTCTCCACCTCTCTAGAA+GGG | 0.550426 | 8.2:-7245755 | None:intergenic |
| TCGAAATTCACGGGGCACAC+GGG | 0.550944 | 8.2:+7246091 | MS.gene051818:CDS |
| TGAATAAATTCCAGGTACAT+GGG | 0.553359 | 8.2:-7245403 | None:intergenic |
| TGGTTCCTATGGCGCATACC+CGG | 0.554696 | 8.2:+7245789 | MS.gene051818:CDS |
| GTATGACAAGGAAGAAGAAG+AGG | 0.555686 | 8.2:+7246419 | MS.gene051818:CDS |
| GAAATGGGTGCAGCACCACC+AGG | 0.555752 | 8.2:-7245718 | None:intergenic |
| CAGAGGAACAAGTGGAGGCA+TGG | 0.561445 | 8.2:+7245424 | MS.gene051818:CDS |
| GGTGGATTTCTCATCGGTGA+AGG | 0.575119 | 8.2:+7244589 | MS.gene051818:CDS |
| GATCACTTGAAAATCGATGC+AGG | 0.580483 | 8.2:+7246172 | MS.gene051818:CDS |
| ATTATATACCCATAAGCAGT+GGG | 0.587040 | 8.2:-7244625 | None:intergenic |
| ATGCAGGTTCTTAATTCAGG+TGG | 0.588415 | 8.2:+7246188 | MS.gene051818:CDS |
| TCAGAAGTGGTAAGCGCTCG+AGG | 0.590830 | 8.2:-7245814 | None:intergenic |
| ATATAATAGGAAGTTAGGAA+TGG | 0.592051 | 8.2:+7246500 | MS.gene051818:CDS |
| GGAATGGAAGCTGTAGCTCA+AGG | 0.592444 | 8.2:+7246516 | MS.gene051818:CDS |
| CCAAACCCCTTCTAGAGAGG+TGG | 0.592960 | 8.2:+7245749 | MS.gene051818:CDS |
| AGTTCAACAACACAAGTACA+AGG | 0.594788 | 8.2:+7244330 | MS.gene051818:CDS |
| TATTTCTGGTATCTCAGAAG+TGG | 0.602504 | 8.2:-7245827 | None:intergenic |
| TACGCTCAAAGATCAACTCC+AGG | 0.602812 | 8.2:+7244568 | MS.gene051818:CDS |
| GGAACATTCATGTGCAGTGG+TGG | 0.609749 | 8.2:+7246477 | MS.gene051818:CDS |
| TTATTCAGAGGAACAAGTGG+AGG | 0.610128 | 8.2:+7245419 | MS.gene051818:CDS |
| AATTTATTCAGAGGAACAAG+TGG | 0.610952 | 8.2:+7245416 | MS.gene051818:CDS |
| TTTCCATAAGCTGTATATCG+AGG | 0.611276 | 8.2:-7246390 | None:intergenic |
| ATAAGCAGTGGGAGAGATGG+AGG | 0.611650 | 8.2:-7244614 | None:intergenic |
| AAGAAGAGGCTCATTTGATG+AGG | 0.613862 | 8.2:+7246433 | MS.gene051818:CDS |
| CAACCAAACCCCTTCTAGAG+AGG | 0.615926 | 8.2:+7245746 | MS.gene051818:CDS |
| ATTCTCCACCTCTCTAGAAG+GGG | 0.617495 | 8.2:-7245754 | None:intergenic |
| AACCTAAGAAAAGCTTATGA+GGG | 0.618035 | 8.2:+7246456 | MS.gene051818:CDS |
| TGGAGAATTCTCAAGCCAGA+TGG | 0.619198 | 8.2:+7245769 | MS.gene051818:CDS |
| GGTATTGGAGCTGAAAGAGT+TGG | 0.624730 | 8.2:+7246228 | MS.gene051818:CDS |
| GAATAAATTCCAGGTACATG+GGG | 0.626230 | 8.2:-7245402 | None:intergenic |
| ACTCCAGGTGGATTTCTCAT+CGG | 0.631444 | 8.2:+7244583 | MS.gene051818:CDS |
| AATTATATACCCATAAGCAG+TGG | 0.632930 | 8.2:-7244626 | None:intergenic |
| ACTGCTAAGCCTAATCCAAG+TGG | 0.645958 | 8.2:-7246300 | None:intergenic |
| AGCTCCAATACCAGAAACAA+CGG | 0.648152 | 8.2:-7246217 | None:intergenic |
| TGTGAAGCAGTGTATCAGCC+TGG | 0.649524 | 8.2:+7245700 | MS.gene051818:intron |
| GTGGATGCTGCTCATGCCAA+AGG | 0.652152 | 8.2:+7245456 | MS.gene051818:CDS |
| GATCGAACAGACGAGTATGG+TGG | 0.652328 | 8.2:+7246150 | MS.gene051818:CDS |
| TGAGATACCAGAAATAGTCA+AGG | 0.658712 | 8.2:+7245834 | MS.gene051818:CDS |
| TGTACCTGGAATTTATTCAG+AGG | 0.660053 | 8.2:+7245407 | MS.gene051818:CDS |
| ATCATTGTGATCAATTGCTG+GGG | 0.663260 | 8.2:-7246262 | None:intergenic |
| TCACCGATGAGAAATCCACC+TGG | 0.665351 | 8.2:-7244586 | None:intergenic |
| AATCTTGTAAGGAGAAAAGA+GGG | 0.669109 | 8.2:-7244367 | None:intergenic |
| GGAGGCATGGAGAAATGTCG+TGG | 0.680628 | 8.2:+7245437 | MS.gene051818:CDS |
| GCTCAAAGATCAACTCCAGG+TGG | 0.683876 | 8.2:+7244571 | MS.gene051818:CDS |
| GAGGGAACATTCATGTGCAG+TGG | 0.698747 | 8.2:+7246474 | MS.gene051818:CDS |
| TGATGGAGTCGAAATTCACG+GGG | 0.717446 | 8.2:+7246083 | MS.gene051818:CDS |
| GAAGCAGTGTATCAGCCTGG+TGG | 0.735693 | 8.2:+7245703 | MS.gene051818:intron |
| CTTGTAAGGAGAAAAGAGGG+TGG | 0.760384 | 8.2:-7244364 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGAAAATATTACATTA+TGG | + | chr8.2:7245345-7245364 | MS.gene051818:intron | 10.0% |
| !!! | AAATTTGGATTATTTTTTTA+AGG | - | chr8.2:7244797-7244816 | None:intergenic | 10.0% |
| !!! | TGTAATATTTTCATATATTT+AGG | - | chr8.2:7245342-7245361 | None:intergenic | 10.0% |
| !! | AAACAGTTATAAAGTAATAA+AGG | + | chr8.2:7244854-7244873 | MS.gene051818:intron | 15.0% |
| !! | AGTACATAAAACTAAATAAA+CGG | + | chr8.2:7245114-7245133 | MS.gene051818:intron | 15.0% |
| !! | ATACTGTATAAAAGAAATAT+AGG | + | chr8.2:7244931-7244950 | MS.gene051818:intron | 15.0% |
| !!! | ATAAAGTAATAAAGGTATAT+TGG | + | chr8.2:7244862-7244881 | MS.gene051818:intron | 15.0% |
| !!! | TATTTTCATATATTTAGGAT+TGG | - | chr8.2:7245337-7245356 | None:intergenic | 15.0% |
| !! | AAATAATATTATGTTGATGC+TGG | + | chr8.2:7244750-7244769 | MS.gene051818:intron | 20.0% |
| !! | ACATTATGGTATTGTAATAT+AGG | + | chr8.2:7245359-7245378 | MS.gene051818:intron | 20.0% |
| !! | ATACATCTAACAATCAAATT+TGG | - | chr8.2:7244812-7244831 | None:intergenic | 20.0% |
| !! | CATTATGGTATTGTAATATA+GGG | + | chr8.2:7245360-7245379 | MS.gene051818:intron | 20.0% |
| !! | TGTATAAAAGAAATATAGGA+CGG | + | chr8.2:7244935-7244954 | MS.gene051818:intron | 20.0% |
| !!! | TTTATCCTTTGAAATTTGTA+AGG | - | chr8.2:7244907-7244926 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTCTGTTATTGT+GGG | + | chr8.2:7244437-7244456 | MS.gene051818:intron | 20.0% |
| ! | AAAGAAAAAGCTTGAAAAAG+AGG | - | chr8.2:7244652-7244671 | None:intergenic | 25.0% |
| ! | ATATAATAGGAAGTTAGGAA+TGG | + | chr8.2:7246500-7246519 | MS.gene051818:CDS | 25.0% |
| ! | ATTGATCAATTCTTGAAAGA+TGG | + | chr8.2:7246120-7246139 | MS.gene051818:CDS | 25.0% |
| ! | ATTGTCCTTACAAATTTCAA+AGG | + | chr8.2:7244899-7244918 | MS.gene051818:intron | 25.0% |
| ! | CTCACAAACATAAAATAGTA+AGG | - | chr8.2:7245939-7245958 | None:intergenic | 25.0% |
| ! | GACATCAATGAATATAAGTT+AGG | - | chr8.2:7244703-7244722 | None:intergenic | 25.0% |
| ! | TATTTGTTTACATCTCTTCA+AGG | + | chr8.2:7245899-7245918 | MS.gene051818:intron | 25.0% |
| ! | TGTATGTTGGTATTTACTAT+TGG | + | chr8.2:7244827-7244846 | MS.gene051818:intron | 25.0% |
| ! | TTAAACCTTAAAACCAAATC+TGG | - | chr8.2:7246585-7246604 | None:intergenic | 25.0% |
| ! | TTCACAATTAAATCATTGAG+TGG | - | chr8.2:7245686-7245705 | None:intergenic | 25.0% |
| ! | TTGATCAATTCTTGAAAGAT+GGG | + | chr8.2:7246121-7246140 | MS.gene051818:CDS | 25.0% |
| ! | TTGTAATATAGGGAAATGTT+TGG | + | chr8.2:7245370-7245389 | MS.gene051818:intron | 25.0% |
| ! | TTTGATTGTTAGATGTATGT+TGG | + | chr8.2:7244814-7244833 | MS.gene051818:intron | 25.0% |
| !!! | GTTTTTTTTCTCTGTTATTG+TGG | + | chr8.2:7244436-7244455 | MS.gene051818:intron | 25.0% |
| AACCTAAGAAAAGCTTATGA+GGG | + | chr8.2:7246456-7246475 | MS.gene051818:CDS | 30.0% | |
| AATCTTGTAAGGAGAAAAGA+GGG | - | chr8.2:7244370-7244389 | None:intergenic | 30.0% | |
| AATTATATACCCATAAGCAG+TGG | - | chr8.2:7244629-7244648 | None:intergenic | 30.0% | |
| AATTTATTCAGAGGAACAAG+TGG | + | chr8.2:7245416-7245435 | MS.gene051818:CDS | 30.0% | |
| ATTATATACCCATAAGCAGT+GGG | - | chr8.2:7244628-7244647 | None:intergenic | 30.0% | |
| GAATAGTACTAAAACCATGT+AGG | - | chr8.2:7245153-7245172 | None:intergenic | 30.0% | |
| TGAATAAATTCCAGGTACAT+GGG | - | chr8.2:7245406-7245425 | None:intergenic | 30.0% | |
| TTGAAGTTTGCAATCTTGTA+AGG | - | chr8.2:7244381-7244400 | None:intergenic | 30.0% | |
| TTTCATCTCTAATCCAGATT+TGG | + | chr8.2:7246569-7246588 | MS.gene051818:intron | 30.0% | |
| ! | CAAACTTCAACTTTTCTCAT+AGG | + | chr8.2:7244391-7244410 | MS.gene051818:CDS | 30.0% |
| ! | GCATTATCTTTTGTCAGTTA+TGG | + | chr8.2:7245481-7245500 | MS.gene051818:CDS | 30.0% |
| ! | GTTTTCAATGCAGTTCATTA+AGG | - | chr8.2:7245573-7245592 | None:intergenic | 30.0% |
| !!! | CTAATCCAGATTTGGTTTTA+AGG | + | chr8.2:7246577-7246596 | MS.gene051818:intron | 30.0% |
| AACAATCTCCAAAAAGAGCT+TGG | + | chr8.2:7246336-7246355 | MS.gene051818:CDS | 35.0% | |
| AAGTTGCGACAAATGAATCA+AGG | - | chr8.2:7245034-7245053 | None:intergenic | 35.0% | |
| ACAAAAGATAATGCTGCCTT+TGG | - | chr8.2:7245475-7245494 | None:intergenic | 35.0% | |
| ACTATGATCTGATGTGGTTA+TGG | + | chr8.2:7244462-7244481 | MS.gene051818:intron | 35.0% | |
| AGGTTGAGTAACATGAAGAT+AGG | - | chr8.2:7246373-7246392 | None:intergenic | 35.0% | |
| AGTTCAACAACACAAGTACA+AGG | + | chr8.2:7244330-7244349 | MS.gene051818:CDS | 35.0% | |
| AGTTGCGACAAATGAATCAA+GGG | - | chr8.2:7245033-7245052 | None:intergenic | 35.0% | |
| ATCAACGACAAAAAGAACAC+AGG | - | chr8.2:7245231-7245250 | None:intergenic | 35.0% | |
| ATCATTGTGATCAATTGCTG+GGG | - | chr8.2:7246265-7246284 | None:intergenic | 35.0% | |
| ATCTGATGTGGTTATGGTAT+TGG | + | chr8.2:7244468-7244487 | MS.gene051818:intron | 35.0% | |
| ATGAAATGAGACGTACATAC+AGG | + | chr8.2:7246057-7246076 | MS.gene051818:intron | 35.0% | |
| CAATCTTGTAAGGAGAAAAG+AGG | - | chr8.2:7244371-7244390 | None:intergenic | 35.0% | |
| CACATGACAAAAAGAAACTC+CGG | - | chr8.2:7245065-7245084 | None:intergenic | 35.0% | |
| CATCATTGTGATCAATTGCT+GGG | - | chr8.2:7246266-7246285 | None:intergenic | 35.0% | |
| CGATAATCCTTGACTATTTC+TGG | - | chr8.2:7245844-7245863 | None:intergenic | 35.0% | |
| CTGAATAAATTCCAGGTACA+TGG | - | chr8.2:7245407-7245426 | None:intergenic | 35.0% | |
| GAACCTAAGAAAAGCTTATG+AGG | + | chr8.2:7246455-7246474 | MS.gene051818:CDS | 35.0% | |
| GAATAAATTCCAGGTACATG+GGG | - | chr8.2:7245405-7245424 | None:intergenic | 35.0% | |
| GAATCGCATTAATAGCTGAT+TGG | - | chr8.2:7245867-7245886 | None:intergenic | 35.0% | |
| GGTGGATATAATAGGAAGTT+AGG | + | chr8.2:7246495-7246514 | MS.gene051818:CDS | 35.0% | |
| GTCAAACAAAAAGTCCTACA+TGG | + | chr8.2:7245136-7245155 | MS.gene051818:intron | 35.0% | |
| TGAGATACCAGAAATAGTCA+AGG | + | chr8.2:7245834-7245853 | MS.gene051818:CDS | 35.0% | |
| TGGAAAAACTGAGTATGACA+AGG | + | chr8.2:7246407-7246426 | MS.gene051818:CDS | 35.0% | |
| TGTACCTGGAATTTATTCAG+AGG | + | chr8.2:7245407-7245426 | MS.gene051818:CDS | 35.0% | |
| TGTTCCTCTGAATAAATTCC+AGG | - | chr8.2:7245414-7245433 | None:intergenic | 35.0% | |
| TTAAACACAATCAGCCTCAT+TGG | - | chr8.2:7245188-7245207 | None:intergenic | 35.0% | |
| TTTCCATAAGCTGTATATCG+AGG | - | chr8.2:7246393-7246412 | None:intergenic | 35.0% | |
| TTTGATGGAGTCGAAATTCA+CGG | + | chr8.2:7246081-7246100 | MS.gene051818:CDS | 35.0% | |
| ! | CATGCATCTGATTTTGTCAA+TGG | + | chr8.2:7245000-7245019 | MS.gene051818:intron | 35.0% |
| ! | CATTTAGGATAGTGAAACTG+AGG | - | chr8.2:7245536-7245555 | None:intergenic | 35.0% |
| ! | GATGAACTTGTGAAGCATTT+AGG | - | chr8.2:7245551-7245570 | None:intergenic | 35.0% |
| ! | GTTTTCTACCAAGCTCTTTT+TGG | - | chr8.2:7246347-7246366 | None:intergenic | 35.0% |
| ! | TTCCCTCATAAGCTTTTCTT+AGG | - | chr8.2:7246461-7246480 | None:intergenic | 35.0% |
| ! | TTTTGTCAGTTATGGCATGT+TGG | + | chr8.2:7245489-7245508 | MS.gene051818:CDS | 35.0% |
| !! | GATGCTGATTTGGTATCATT+TGG | + | chr8.2:7246540-7246559 | MS.gene051818:intron | 35.0% |
| !! | TATTTCTGGTATCTCAGAAG+TGG | - | chr8.2:7245830-7245849 | None:intergenic | 35.0% |
| AAGAAGAGGCTCATTTGATG+AGG | + | chr8.2:7246433-7246452 | MS.gene051818:CDS | 40.0% | |
| AATGATCGAACAGACGAGTA+TGG | + | chr8.2:7246147-7246166 | MS.gene051818:CDS | 40.0% | |
| AGCTCCAATACCAGAAACAA+CGG | - | chr8.2:7246220-7246239 | None:intergenic | 40.0% | |
| ATGCAGGTTCTTAATTCAGG+TGG | + | chr8.2:7246188-7246207 | MS.gene051818:CDS | 40.0% | |
| CAACCTCGATATACAGCTTA+TGG | + | chr8.2:7246387-7246406 | MS.gene051818:CDS | 40.0% | |
| GAAACTGAGGTTACCAGAAT+GGG | - | chr8.2:7245523-7245542 | None:intergenic | 40.0% | |
| GATCACTTGAAAATCGATGC+AGG | + | chr8.2:7246172-7246191 | MS.gene051818:CDS | 40.0% | |
| GATTCTGATCCACTTGGATT+AGG | + | chr8.2:7246291-7246310 | MS.gene051818:CDS | 40.0% | |
| GCATCATTGTGATCAATTGC+TGG | - | chr8.2:7246267-7246286 | None:intergenic | 40.0% | |
| GGTTCTTAATTCAGGTGGTT+CGG | + | chr8.2:7246193-7246212 | MS.gene051818:CDS | 40.0% | |
| GTATGACAAGGAAGAAGAAG+AGG | + | chr8.2:7246419-7246438 | MS.gene051818:CDS | 40.0% | |
| GTTCTTAATTCAGGTGGTTC+GGG | + | chr8.2:7246194-7246213 | MS.gene051818:CDS | 40.0% | |
| TCGATGCAGGTTCTTAATTC+AGG | + | chr8.2:7246185-7246204 | MS.gene051818:CDS | 40.0% | |
| TGAAACTGAGGTTACCAGAA+TGG | - | chr8.2:7245524-7245543 | None:intergenic | 40.0% | |
| TTATTCAGAGGAACAAGTGG+AGG | + | chr8.2:7245419-7245438 | MS.gene051818:CDS | 40.0% | |
| TTGATGGAGTCGAAATTCAC+GGG | + | chr8.2:7246082-7246101 | MS.gene051818:CDS | 40.0% | |
| ! | AATTCTCCACCTCTCTAGAA+GGG | - | chr8.2:7245758-7245777 | None:intergenic | 40.0% |
| ! | CATCTGATTTTGTCAATGGC+CGG | + | chr8.2:7245004-7245023 | MS.gene051818:intron | 40.0% |
| ! | GGTTTGGTTGTGGATGAAAT+GGG | - | chr8.2:7245736-7245755 | None:intergenic | 40.0% |
| ! | TGTCGCAACTTCTTTTTGAC+CGG | + | chr8.2:7245043-7245062 | MS.gene051818:intron | 40.0% |
| !! | GACGTACATACAGGTTTTGA+TGG | + | chr8.2:7246066-7246085 | MS.gene051818:intron | 40.0% |
| !! | GCTATTGATTCTGATCCACT+TGG | + | chr8.2:7246285-7246304 | MS.gene051818:CDS | 40.0% |
| !! | TGTGCAGTGGTGGATATAAT+AGG | + | chr8.2:7246487-7246506 | MS.gene051818:CDS | 40.0% |
| ACAAATGAATCAAGGGTGGC+CGG | - | chr8.2:7245026-7245045 | None:intergenic | 45.0% | |
| ACACAATCAGCCTCATTGGT+TGG | - | chr8.2:7245184-7245203 | None:intergenic | 45.0% | |
| ACTGCTAAGCCTAATCCAAG+TGG | - | chr8.2:7246303-7246322 | None:intergenic | 45.0% | |
| ATACTCGTGTTGCATCTGCA+CGG | + | chr8.2:7245983-7246002 | MS.gene051818:intron | 45.0% | |
| CTTGTAAGGAGAAAAGAGGG+TGG | - | chr8.2:7244367-7244386 | None:intergenic | 45.0% | |
| GAATTCTCCACCTCTCTAGA+AGG | - | chr8.2:7245759-7245778 | None:intergenic | 45.0% | |
| GCTATTAATGCGATTCGAGC+AGG | + | chr8.2:7245871-7245890 | MS.gene051818:CDS | 45.0% | |
| TACGCTCAAAGATCAACTCC+AGG | + | chr8.2:7244568-7244587 | MS.gene051818:CDS | 45.0% | |
| TATAGGGAAATGTTTGGCGC+AGG | + | chr8.2:7245376-7245395 | MS.gene051818:intron | 45.0% | |
| TCTATCGCTACCAACCAATG+AGG | + | chr8.2:7245171-7245190 | MS.gene051818:intron | 45.0% | |
| TGATGGAGTCGAAATTCACG+GGG | + | chr8.2:7246083-7246102 | MS.gene051818:CDS | 45.0% | |
| TGCGACAAATGAATCAAGGG+TGG | - | chr8.2:7245030-7245049 | None:intergenic | 45.0% | |
| TGGAGAATTCTCAAGCCAGA+TGG | + | chr8.2:7245769-7245788 | MS.gene051818:CDS | 45.0% | |
| TGGGTGACTATGATCTGATG+TGG | + | chr8.2:7244456-7244475 | MS.gene051818:intron | 45.0% | |
| ! | ACTCCAGGTGGATTTCTCAT+CGG | + | chr8.2:7244583-7244602 | MS.gene051818:CDS | 45.0% |
| ! | AGCTCAAGGTGATGCTGATT+TGG | + | chr8.2:7246530-7246549 | MS.gene051818:CDS | 45.0% |
| ! | ATTCTCCACCTCTCTAGAAG+GGG | - | chr8.2:7245757-7245776 | None:intergenic | 45.0% |
| ! | GGGTTTGGTTGTGGATGAAA+TGG | - | chr8.2:7245737-7245756 | None:intergenic | 45.0% |
| ! | GGTATTGGAGCTGAAAGAGT+TGG | + | chr8.2:7246228-7246247 | MS.gene051818:CDS | 45.0% |
| ! | GGTTATGGTATTGGAGTGCA+GGG | + | chr8.2:7244477-7244496 | MS.gene051818:intron | 45.0% |
| ! | TATTCAGCAAGTGCTGCGTT+TGG | - | chr8.2:7244547-7244566 | None:intergenic | 45.0% |
| ! | TGGTTATGGTATTGGAGTGC+AGG | + | chr8.2:7244476-7244495 | MS.gene051818:intron | 45.0% |
| AACGCTCTGCATCTCGTCAT+AGG | - | chr8.2:7244514-7244533 | None:intergenic | 50.0% | |
| ATAAGCAGTGGGAGAGATGG+AGG | - | chr8.2:7244617-7244636 | None:intergenic | 50.0% | |
| CCATCTCTCCCACTGCTTAT+GGG | + | chr8.2:7244617-7244636 | MS.gene051818:CDS | 50.0% | |
| CTCAAGCCAGATGGTTCCTA+TGG | + | chr8.2:7245778-7245797 | MS.gene051818:CDS | 50.0% | |
| GAGGGAACATTCATGTGCAG+TGG | + | chr8.2:7246474-7246493 | MS.gene051818:CDS | 50.0% | |
| GATCGAACAGACGAGTATGG+TGG | + | chr8.2:7246150-7246169 | MS.gene051818:CDS | 50.0% | |
| GCTCAAAGATCAACTCCAGG+TGG | + | chr8.2:7244571-7244590 | MS.gene051818:CDS | 50.0% | |
| GGAACATTCATGTGCAGTGG+TGG | + | chr8.2:7246477-7246496 | MS.gene051818:CDS | 50.0% | |
| GGAATGGAAGCTGTAGCTCA+AGG | + | chr8.2:7246516-7246535 | MS.gene051818:CDS | 50.0% | |
| GTGCAGATGCAACACGAGTA+TGG | - | chr8.2:7245984-7246003 | None:intergenic | 50.0% | |
| TACTCGTGTTGCATCTGCAC+GGG | + | chr8.2:7245984-7246003 | MS.gene051818:intron | 50.0% | |
| TATGCGCCATAGGAACCATC+TGG | - | chr8.2:7245787-7245806 | None:intergenic | 50.0% | |
| TCACCGATGAGAAATCCACC+TGG | - | chr8.2:7244589-7244608 | None:intergenic | 50.0% | |
| TCCATCTCTCCCACTGCTTA+TGG | + | chr8.2:7244616-7244635 | MS.gene051818:CDS | 50.0% | |
| TGTGAAGCAGTGTATCAGCC+TGG | + | chr8.2:7245700-7245719 | MS.gene051818:intron | 50.0% | |
| TGTTGCATCTGCACGGGTAT+GGG | + | chr8.2:7245990-7246009 | MS.gene051818:intron | 50.0% | |
| ! | CAACCAAACCCCTTCTAGAG+AGG | + | chr8.2:7245746-7245765 | MS.gene051818:CDS | 50.0% |
| ! | CTCTAGAAGGGGTTTGGTTG+TGG | - | chr8.2:7245746-7245765 | None:intergenic | 50.0% |
| ! | GGTGGATTTCTCATCGGTGA+AGG | + | chr8.2:7244589-7244608 | MS.gene051818:CDS | 50.0% |
| ! | TATGGTATTGGAGTGCAGGG+TGG | + | chr8.2:7244480-7244499 | MS.gene051818:intron | 50.0% |
| !! | ACGAGATGCAGAGCGTTGAA+TGG | + | chr8.2:7244517-7244536 | MS.gene051818:CDS | 50.0% |
| AGGAGAAAAGAGGGTGGTGC+TGG | - | chr8.2:7244361-7244380 | None:intergenic | 55.0% | |
| ATTGGAGTGCAGGGTGGTGT+TGG | + | chr8.2:7244486-7244505 | MS.gene051818:intron | 55.0% | |
| CAGAGGAACAAGTGGAGGCA+TGG | + | chr8.2:7245424-7245443 | MS.gene051818:CDS | 55.0% | |
| CCCATAAGCAGTGGGAGAGA+TGG | - | chr8.2:7244620-7244639 | None:intergenic | 55.0% | |
| GAAGCAGTGTATCAGCCTGG+TGG | + | chr8.2:7245703-7245722 | MS.gene051818:intron | 55.0% | |
| GTCGAAATTCACGGGGCACA+CGG | + | chr8.2:7246090-7246109 | MS.gene051818:CDS | 55.0% | |
| GTGGATGCTGCTCATGCCAA+AGG | + | chr8.2:7245456-7245475 | MS.gene051818:CDS | 55.0% | |
| GTGTTGCATCTGCACGGGTA+TGG | + | chr8.2:7245989-7246008 | MS.gene051818:intron | 55.0% | |
| GTTGGTCGTGCATCCCATTC+TGG | + | chr8.2:7245507-7245526 | MS.gene051818:CDS | 55.0% | |
| TCAGAAGTGGTAAGCGCTCG+AGG | - | chr8.2:7245817-7245836 | None:intergenic | 55.0% | |
| TCGAAATTCACGGGGCACAC+GGG | + | chr8.2:7246091-7246110 | MS.gene051818:CDS | 55.0% | |
| TGGTTCCTATGGCGCATACC+CGG | + | chr8.2:7245789-7245808 | MS.gene051818:CDS | 55.0% | |
| ! | CCAAACCCCTTCTAGAGAGG+TGG | + | chr8.2:7245749-7245768 | MS.gene051818:CDS | 55.0% |
| ! | CCACCTCTCTAGAAGGGGTT+TGG | - | chr8.2:7245752-7245771 | None:intergenic | 55.0% |
| ! | GGAGGCATGGAGAAATGTCG+TGG | + | chr8.2:7245437-7245456 | MS.gene051818:CDS | 55.0% |
| !! | CGGGCCGTTGTTTCTGGTAT+TGG | + | chr8.2:7246213-7246232 | MS.gene051818:CDS | 55.0% |
| CGCAGGTTTCCCCATGTACC+TGG | + | chr8.2:7245393-7245412 | MS.gene051818:intron | 60.0% | |
| GAAATGGGTGCAGCACCACC+AGG | - | chr8.2:7245721-7245740 | None:intergenic | 60.0% | |
| ! | GTGGTTCGGGCCGTTGTTTC+TGG | + | chr8.2:7246207-7246226 | MS.gene051818:CDS | 60.0% |
| AGGCTCCGGGTATGCGCCAT+AGG | - | chr8.2:7245797-7245816 | None:intergenic | 65.0% | |
| GTGGTAAGCGCTCGAGGCTC+CGG | - | chr8.2:7245811-7245830 | None:intergenic | 65.0% | |
| TGGTAAGCGCTCGAGGCTCC+GGG | - | chr8.2:7245810-7245829 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7244309 | 7246604 | 7244309 | ID=MS.gene051818 |
| chr8.2 | mRNA | 7244309 | 7246604 | 7244309 | ID=MS.gene051818.t1;Parent=MS.gene051818 |
| chr8.2 | exon | 7244309 | 7244412 | 7244309 | ID=MS.gene051818.t1.exon1;Parent=MS.gene051818.t1 |
| chr8.2 | CDS | 7244309 | 7244412 | 7244309 | ID=cds.MS.gene051818.t1;Parent=MS.gene051818.t1 |
| chr8.2 | exon | 7244498 | 7244638 | 7244498 | ID=MS.gene051818.t1.exon2;Parent=MS.gene051818.t1 |
| chr8.2 | CDS | 7244498 | 7244638 | 7244498 | ID=cds.MS.gene051818.t1;Parent=MS.gene051818.t1 |
| chr8.2 | exon | 7245398 | 7245528 | 7245398 | ID=MS.gene051818.t1.exon3;Parent=MS.gene051818.t1 |
| chr8.2 | CDS | 7245398 | 7245528 | 7245398 | ID=cds.MS.gene051818.t1;Parent=MS.gene051818.t1 |
| chr8.2 | exon | 7245710 | 7245892 | 7245710 | ID=MS.gene051818.t1.exon4;Parent=MS.gene051818.t1 |
| chr8.2 | CDS | 7245710 | 7245892 | 7245710 | ID=cds.MS.gene051818.t1;Parent=MS.gene051818.t1 |
| chr8.2 | exon | 7246079 | 7246551 | 7246079 | ID=MS.gene051818.t1.exon5;Parent=MS.gene051818.t1 |
| chr8.2 | CDS | 7246079 | 7246551 | 7246079 | ID=cds.MS.gene051818.t1;Parent=MS.gene051818.t1 |
| chr8.2 | exon | 7246599 | 7246604 | 7246599 | ID=MS.gene051818.t1.exon6;Parent=MS.gene051818.t1 |
| chr8.2 | CDS | 7246599 | 7246604 | 7246599 | ID=cds.MS.gene051818.t1;Parent=MS.gene051818.t1 |
| Gene Sequence |
| Protein sequence |
