Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26506.t1 | XP_013458417.1 | 95.3 | 342 | 14 | 1 | 1 | 342 | 1 | 340 | 1.20E-187 | 665.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26506.t1 | Q9FEW9 | 72.7 | 330 | 87 | 1 | 16 | 342 | 7 | 336 | 2.1e-143 | 510.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26506.t1 | A0A072UTR0 | 95.3 | 342 | 14 | 1 | 1 | 342 | 1 | 340 | 8.9e-188 | 665.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051818 | MS.gene26506 | 0.931634 | 2.83E-94 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26506.t1 | MTR_4g125470 | 95.322 | 342 | 14 | 1 | 1 | 342 | 1 | 340 | 0.0 | 677 |
| MS.gene26506.t1 | MTR_5g006710 | 50.613 | 326 | 142 | 3 | 17 | 342 | 8 | 314 | 2.20e-117 | 344 |
| MS.gene26506.t1 | MTR_5g006800 | 50.606 | 330 | 150 | 3 | 13 | 342 | 4 | 320 | 1.52e-115 | 339 |
| MS.gene26506.t1 | MTR_5g006670 | 50.621 | 322 | 140 | 3 | 21 | 342 | 8 | 310 | 6.33e-115 | 337 |
| MS.gene26506.t1 | MTR_5g006740 | 50.617 | 324 | 143 | 5 | 21 | 342 | 8 | 316 | 2.11e-111 | 328 |
| MS.gene26506.t1 | MTR_5g006780 | 51.077 | 325 | 142 | 5 | 21 | 342 | 12 | 322 | 7.15e-111 | 327 |
| MS.gene26506.t1 | MTR_3g115600 | 51.212 | 330 | 142 | 5 | 14 | 342 | 3 | 314 | 3.11e-110 | 326 |
| MS.gene26506.t1 | MTR_5g006750 | 49.221 | 321 | 148 | 4 | 21 | 339 | 12 | 319 | 1.23e-107 | 319 |
| MS.gene26506.t1 | MTR_5g008040 | 49.843 | 319 | 147 | 4 | 21 | 339 | 14 | 319 | 5.71e-107 | 318 |
| MS.gene26506.t1 | MTR_5g006740 | 47.531 | 324 | 136 | 6 | 21 | 342 | 8 | 299 | 2.20e-96 | 290 |
| MS.gene26506.t1 | MTR_5g006720 | 46.526 | 331 | 124 | 4 | 21 | 339 | 11 | 300 | 2.49e-96 | 290 |
| MS.gene26506.t1 | MTR_5g006730 | 53.774 | 106 | 49 | 0 | 21 | 126 | 12 | 117 | 3.96e-39 | 135 |
| MS.gene26506.t1 | MTR_3g096570 | 72.581 | 62 | 17 | 0 | 186 | 247 | 8 | 69 | 2.35e-25 | 103 |
| MS.gene26506.t1 | MTR_3g096562 | 66.667 | 66 | 22 | 0 | 182 | 247 | 168 | 233 | 7.36e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26506.t1 | AT2G06050 | 72.024 | 336 | 90 | 2 | 11 | 342 | 2 | 337 | 0.0 | 510 |
| MS.gene26506.t1 | AT2G06050 | 72.024 | 336 | 90 | 2 | 11 | 342 | 2 | 337 | 0.0 | 510 |
| MS.gene26506.t1 | AT2G06050 | 72.024 | 336 | 90 | 2 | 11 | 342 | 2 | 337 | 0.0 | 510 |
| MS.gene26506.t1 | AT1G76690 | 49.080 | 326 | 153 | 3 | 14 | 339 | 7 | 319 | 6.83e-112 | 330 |
| MS.gene26506.t1 | AT1G76680 | 49.693 | 326 | 151 | 3 | 14 | 339 | 5 | 317 | 2.18e-110 | 326 |
| MS.gene26506.t1 | AT1G09400 | 48.562 | 313 | 142 | 3 | 27 | 339 | 1 | 294 | 8.30e-107 | 315 |
| MS.gene26506.t1 | AT1G76680 | 46.154 | 351 | 151 | 4 | 14 | 339 | 5 | 342 | 8.70e-105 | 313 |
| MS.gene26506.t1 | AT1G17990 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.34e-99 | 295 |
| MS.gene26506.t1 | AT1G18020 | 53.906 | 256 | 111 | 2 | 18 | 273 | 6 | 254 | 1.34e-99 | 295 |
| MS.gene26506.t1 | AT1G17990 | 51.172 | 256 | 110 | 3 | 18 | 273 | 6 | 246 | 3.02e-91 | 273 |
| MS.gene26506.t1 | AT1G09400 | 48.425 | 254 | 112 | 3 | 86 | 339 | 1 | 235 | 9.94e-83 | 252 |
Find 97 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAATCCTTGACTATTTC+TGG | 0.074699 | 8.1:-6737490 | None:intergenic |
| GTGGTTCGGGCCGTTGTTTC+TGG | 0.111017 | 8.1:+6737856 | MS.gene26506:CDS |
| TCCATCTCTCCCACTGCTTA+TGG | 0.186529 | 8.1:+6736286 | MS.gene26506:CDS |
| CGGGCCGTTGTTTCTGGTAT+TGG | 0.254686 | 8.1:+6737862 | MS.gene26506:CDS |
| CAACCTCGATATACAGCTTA+TGG | 0.287602 | 8.1:+6738036 | MS.gene26506:CDS |
| TCGATGCAGGTTCTTAATTC+AGG | 0.309680 | 8.1:+6737834 | MS.gene26506:CDS |
| GGTTCTTAATTCAGGTGGTT+CGG | 0.310782 | 8.1:+6737842 | MS.gene26506:CDS |
| GATTCTGATCCACTTGGATT+AGG | 0.315458 | 8.1:+6737940 | MS.gene26506:CDS |
| GGGTTTGGTTGTGGATGAAA+TGG | 0.321666 | 8.1:-6737383 | None:intergenic |
| CCACCTCTCTAGAAGGGGTT+TGG | 0.330917 | 8.1:-6737398 | None:intergenic |
| GTTCTTAATTCAGGTGGTTC+GGG | 0.333795 | 8.1:+6737843 | MS.gene26506:CDS |
| CCATCTCTCCCACTGCTTAT+GGG | 0.338294 | 8.1:+6736287 | MS.gene26506:CDS |
| CTCTAGAAGGGGTTTGGTTG+TGG | 0.342961 | 8.1:-6737392 | None:intergenic |
| TGTTCCTCTGAATAAATTCC+AGG | 0.349073 | 8.1:-6737060 | None:intergenic |
| GTTGGTCGTGCATCCCATTC+TGG | 0.363613 | 8.1:+6737156 | MS.gene26506:CDS |
| TTGAAGTTTGCAATCTTGTA+AGG | 0.367147 | 8.1:-6736048 | None:intergenic |
| TGTGCAGTGGTGGATATAAT+AGG | 0.370705 | 8.1:+6738136 | MS.gene26506:CDS |
| GTGGTAAGCGCTCGAGGCTC+CGG | 0.373825 | 8.1:-6737457 | None:intergenic |
| GGTGGATATAATAGGAAGTT+AGG | 0.374612 | 8.1:+6738144 | MS.gene26506:CDS |
| GAATTCTCCACCTCTCTAGA+AGG | 0.384447 | 8.1:-6737405 | None:intergenic |
| ATTGATCAATTCTTGAAAGA+TGG | 0.389055 | 8.1:+6737769 | MS.gene26506:CDS |
| CGCAGGTTTCCCCATGTACC+TGG | 0.393784 | 8.1:+6737042 | MS.gene26506:intron |
| GAACCTAAGAAAAGCTTATG+AGG | 0.420831 | 8.1:+6738104 | MS.gene26506:CDS |
| CTGAATAAATTCCAGGTACA+TGG | 0.427423 | 8.1:-6737053 | None:intergenic |
| AATGATCGAACAGACGAGTA+TGG | 0.441181 | 8.1:+6737796 | MS.gene26506:CDS |
| TATTCAGCAAGTGCTGCGTT+TGG | 0.442605 | 8.1:-6736214 | None:intergenic |
| AACGCTCTGCATCTCGTCAT+AGG | 0.445839 | 8.1:-6736181 | None:intergenic |
| ATTGGAGTGCAGGGTGGTGT+TGG | 0.449570 | 8.1:+6736156 | MS.gene26506:intron |
| GTAATTCCAAAATTACTAAA+GGG | 0.457004 | 8.1:-6738612 | None:intergenic |
| GCTATTAATGCGATTCGAGC+AGG | 0.471945 | 8.1:+6737520 | MS.gene26506:CDS |
| TTGATCAATTCTTGAAAGAT+GGG | 0.478672 | 8.1:+6737770 | MS.gene26506:CDS |
| CTCAAGCCAGATGGTTCCTA+TGG | 0.479424 | 8.1:+6737427 | MS.gene26506:CDS |
| ACAAAAGATAATGCTGCCTT+TGG | 0.485408 | 8.1:-6737121 | None:intergenic |
| AGGTTGAGTAACATGAAGAT+AGG | 0.492670 | 8.1:-6738019 | None:intergenic |
| GAAACTGAGGTTACCAGAAT+GGG | 0.497238 | 8.1:-6737169 | None:intergenic |
| AGGCTCCGGGTATGCGCCAT+AGG | 0.499161 | 8.1:-6737443 | None:intergenic |
| GGTTTGGTTGTGGATGAAAT+GGG | 0.499316 | 8.1:-6737382 | None:intergenic |
| TTGATGGAGTCGAAATTCAC+GGG | 0.503324 | 8.1:+6737731 | MS.gene26506:CDS |
| GCATCATTGTGATCAATTGC+TGG | 0.504056 | 8.1:-6737913 | None:intergenic |
| TGAAACTGAGGTTACCAGAA+TGG | 0.512235 | 8.1:-6737170 | None:intergenic |
| TTTGATGGAGTCGAAATTCA+CGG | 0.512397 | 8.1:+6737730 | MS.gene26506:CDS |
| AGGAGAAAAGAGGGTGGTGC+TGG | 0.515328 | 8.1:-6736028 | None:intergenic |
| TGGTAAGCGCTCGAGGCTCC+GGG | 0.517375 | 8.1:-6737456 | None:intergenic |
| CCCATAAGCAGTGGGAGAGA+TGG | 0.517721 | 8.1:-6736287 | None:intergenic |
| CAATCTTGTAAGGAGAAAAG+AGG | 0.521873 | 8.1:-6736038 | None:intergenic |
| GAATCGCATTAATAGCTGAT+TGG | 0.525902 | 8.1:-6737513 | None:intergenic |
| GCTATTGATTCTGATCCACT+TGG | 0.530394 | 8.1:+6737934 | MS.gene26506:CDS |
| TATGCGCCATAGGAACCATC+TGG | 0.531081 | 8.1:-6737433 | None:intergenic |
| GTCGAAATTCACGGGGCACA+CGG | 0.533112 | 8.1:+6737739 | MS.gene26506:CDS |
| ACGAGATGCAGAGCGTTGAA+TGG | 0.535942 | 8.1:+6736187 | MS.gene26506:CDS |
| AATTCTCCACCTCTCTAGAA+GGG | 0.550426 | 8.1:-6737404 | None:intergenic |
| TCGAAATTCACGGGGCACAC+GGG | 0.550944 | 8.1:+6737740 | MS.gene26506:CDS |
| TGAATAAATTCCAGGTACAT+GGG | 0.553359 | 8.1:-6737052 | None:intergenic |
| TGGTTCCTATGGCGCATACC+CGG | 0.554696 | 8.1:+6737438 | MS.gene26506:CDS |
| GTATGACAAGGAAGAAGAAG+AGG | 0.555686 | 8.1:+6738068 | MS.gene26506:CDS |
| GAAATGGGTGCAGCACCACC+AGG | 0.555752 | 8.1:-6737367 | None:intergenic |
| CAGAGGAACAAGTGGAGGCA+TGG | 0.561445 | 8.1:+6737073 | MS.gene26506:CDS |
| GGTGGATTTCTCATCGGTGA+AGG | 0.575119 | 8.1:+6736259 | MS.gene26506:CDS |
| GATCACTTGAAAATCGATGC+AGG | 0.580483 | 8.1:+6737821 | MS.gene26506:CDS |
| ATTATATACCCATAAGCAGT+GGG | 0.587040 | 8.1:-6736295 | None:intergenic |
| ATGCAGGTTCTTAATTCAGG+TGG | 0.588415 | 8.1:+6737837 | MS.gene26506:CDS |
| TCAGAAGTGGTAAGCGCTCG+AGG | 0.590830 | 8.1:-6737463 | None:intergenic |
| ATATAATAGGAAGTTAGGAA+TGG | 0.592051 | 8.1:+6738149 | MS.gene26506:CDS |
| GGAATGGAAGCTGTAGCTCA+AGG | 0.592444 | 8.1:+6738165 | MS.gene26506:CDS |
| CCAAACCCCTTCTAGAGAGG+TGG | 0.592960 | 8.1:+6737398 | MS.gene26506:CDS |
| AGTTCAACAACACAAGTACA+AGG | 0.594788 | 8.1:+6736000 | MS.gene26506:CDS |
| TATTTCTGGTATCTCAGAAG+TGG | 0.602504 | 8.1:-6737476 | None:intergenic |
| TACGCTCAAAGATCAACTCC+AGG | 0.602812 | 8.1:+6736238 | MS.gene26506:CDS |
| GGAACATTCATGTGCAGTGG+TGG | 0.609749 | 8.1:+6738126 | MS.gene26506:CDS |
| TTATTCAGAGGAACAAGTGG+AGG | 0.610128 | 8.1:+6737068 | MS.gene26506:CDS |
| AATTTATTCAGAGGAACAAG+TGG | 0.610952 | 8.1:+6737065 | MS.gene26506:CDS |
| TTTCCATAAGCTGTATATCG+AGG | 0.611276 | 8.1:-6738039 | None:intergenic |
| ATAAGCAGTGGGAGAGATGG+AGG | 0.611650 | 8.1:-6736284 | None:intergenic |
| AAGAAGAGGCTCATTTGATG+AGG | 0.613862 | 8.1:+6738082 | MS.gene26506:CDS |
| CAACCAAACCCCTTCTAGAG+AGG | 0.615926 | 8.1:+6737395 | MS.gene26506:CDS |
| ATTCTCCACCTCTCTAGAAG+GGG | 0.617495 | 8.1:-6737403 | None:intergenic |
| AACCTAAGAAAAGCTTATGA+GGG | 0.618035 | 8.1:+6738105 | MS.gene26506:CDS |
| TGGAGAATTCTCAAGCCAGA+TGG | 0.619198 | 8.1:+6737418 | MS.gene26506:CDS |
| GGTATTGGAGCTGAAAGAGT+TGG | 0.624730 | 8.1:+6737877 | MS.gene26506:CDS |
| GAATAAATTCCAGGTACATG+GGG | 0.626230 | 8.1:-6737051 | None:intergenic |
| ACTCCAGGTGGATTTCTCAT+CGG | 0.631444 | 8.1:+6736253 | MS.gene26506:CDS |
| AATTATATACCCATAAGCAG+TGG | 0.632930 | 8.1:-6736296 | None:intergenic |
| ACTGCTAAGCCTAATCCAAG+TGG | 0.645958 | 8.1:-6737949 | None:intergenic |
| AGCTCCAATACCAGAAACAA+CGG | 0.648152 | 8.1:-6737866 | None:intergenic |
| TGTGAAGCAGTGTATCAGCC+TGG | 0.649524 | 8.1:+6737349 | MS.gene26506:intron |
| GTGGATGCTGCTCATGCCAA+AGG | 0.652152 | 8.1:+6737105 | MS.gene26506:CDS |
| GATCGAACAGACGAGTATGG+TGG | 0.652328 | 8.1:+6737799 | MS.gene26506:CDS |
| TGAGATACCAGAAATAGTCA+AGG | 0.658712 | 8.1:+6737483 | MS.gene26506:CDS |
| TGTACCTGGAATTTATTCAG+AGG | 0.660053 | 8.1:+6737056 | MS.gene26506:CDS |
| TCACCGATGAGAAATCCACC+TGG | 0.665351 | 8.1:-6736256 | None:intergenic |
| AATCTTGTAAGGAGAAAAGA+GGG | 0.669109 | 8.1:-6736037 | None:intergenic |
| GGAGGCATGGAGAAATGTCG+TGG | 0.680628 | 8.1:+6737086 | MS.gene26506:CDS |
| GCTCAAAGATCAACTCCAGG+TGG | 0.683876 | 8.1:+6736241 | MS.gene26506:CDS |
| GAGGGAACATTCATGTGCAG+TGG | 0.698747 | 8.1:+6738123 | MS.gene26506:CDS |
| TGATGGAGTCGAAATTCACG+GGG | 0.717446 | 8.1:+6737732 | MS.gene26506:CDS |
| GAAGCAGTGTATCAGCCTGG+TGG | 0.735693 | 8.1:+6737352 | MS.gene26506:intron |
| CTTGTAAGGAGAAAAGAGGG+TGG | 0.760384 | 8.1:-6736034 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGAAAATATTACATTA+TGG | + | chr8.1:6736994-6737013 | MS.gene26506:intron | 10.0% |
| !!! | AAATTTGGATTATTTTTTTA+AGG | - | chr8.1:6736468-6736487 | None:intergenic | 10.0% |
| !!! | TGTAATATTTTCATATATTT+AGG | - | chr8.1:6736991-6737010 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTACCATTT+TGG | + | chr8.1:6738403-6738422 | MS.gene26506:intron | 10.0% |
| !! | AAACAGTTATAAAGTAATAA+AGG | + | chr8.1:6736525-6736544 | MS.gene26506:intron | 15.0% |
| !! | AGTACATAAAACTAAATAAA+CGG | + | chr8.1:6736763-6736782 | MS.gene26506:intron | 15.0% |
| !! | TATATAAAAGAAATATAGGA+CGG | + | chr8.1:6736601-6736620 | MS.gene26506:intron | 15.0% |
| !!! | ATAAAGTAATAAAGGTATAT+TGG | + | chr8.1:6736533-6736552 | MS.gene26506:intron | 15.0% |
| !!! | TATTTTCATATATTTAGGAT+TGG | - | chr8.1:6736986-6737005 | None:intergenic | 15.0% |
| !! | AAATAATATTATGTTGATGC+TGG | + | chr8.1:6736421-6736440 | MS.gene26506:intron | 20.0% |
| !! | AAATGTAATCTTATATATCG+TGG | + | chr8.1:6738480-6738499 | MS.gene26506:intron | 20.0% |
| !! | ACATTATGGTATTGTAATAT+AGG | + | chr8.1:6737008-6737027 | MS.gene26506:intron | 20.0% |
| !! | ATACATCTAACAATCAAATT+TGG | - | chr8.1:6736483-6736502 | None:intergenic | 20.0% |
| !! | CATTATGGTATTGTAATATA+GGG | + | chr8.1:6737009-6737028 | MS.gene26506:intron | 20.0% |
| !!! | TTTATCCTTTGAAATTTGTA+AGG | - | chr8.1:6736578-6736597 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTCTGTTATTGT+GGG | + | chr8.1:6736107-6736126 | MS.gene26506:intron | 20.0% |
| ! | AAAGAAAAAGCTTGAAAAAG+AGG | - | chr8.1:6736322-6736341 | None:intergenic | 25.0% |
| ! | ATATAATAGGAAGTTAGGAA+TGG | + | chr8.1:6738149-6738168 | MS.gene26506:CDS | 25.0% |
| ! | ATTGATCAATTCTTGAAAGA+TGG | + | chr8.1:6737769-6737788 | MS.gene26506:CDS | 25.0% |
| ! | ATTGTCCTTACAAATTTCAA+AGG | + | chr8.1:6736570-6736589 | MS.gene26506:intron | 25.0% |
| ! | CAAAACATTCTCTTAAGATT+TGG | - | chr8.1:6738455-6738474 | None:intergenic | 25.0% |
| ! | CTCACAAACATAAAATAGTA+AGG | - | chr8.1:6737588-6737607 | None:intergenic | 25.0% |
| ! | GACATCAATGAATATAAGTT+AGG | - | chr8.1:6736373-6736392 | None:intergenic | 25.0% |
| ! | TATTTGTTTACATCTCTTCA+AGG | + | chr8.1:6737548-6737567 | MS.gene26506:intron | 25.0% |
| ! | TGTATGTTGGTATTTACTAT+TGG | + | chr8.1:6736498-6736517 | MS.gene26506:intron | 25.0% |
| ! | TTAAACCTTAAAACCAAATC+TGG | - | chr8.1:6738234-6738253 | None:intergenic | 25.0% |
| ! | TTCACAATTAAATCATTGAG+TGG | - | chr8.1:6737335-6737354 | None:intergenic | 25.0% |
| ! | TTGATCAATTCTTGAAAGAT+GGG | + | chr8.1:6737770-6737789 | MS.gene26506:CDS | 25.0% |
| ! | TTGTAATATAGGGAAATGTT+TGG | + | chr8.1:6737019-6737038 | MS.gene26506:intron | 25.0% |
| ! | TTTGATTGTTAGATGTATGT+TGG | + | chr8.1:6736485-6736504 | MS.gene26506:intron | 25.0% |
| !!! | GTTTTTTTTCTCTGTTATTG+TGG | + | chr8.1:6736106-6736125 | MS.gene26506:intron | 25.0% |
| AACCTAAGAAAAGCTTATGA+GGG | + | chr8.1:6738105-6738124 | MS.gene26506:CDS | 30.0% | |
| AATCTTGTAAGGAGAAAAGA+GGG | - | chr8.1:6736040-6736059 | None:intergenic | 30.0% | |
| AATTATATACCCATAAGCAG+TGG | - | chr8.1:6736299-6736318 | None:intergenic | 30.0% | |
| AATTTATTCAGAGGAACAAG+TGG | + | chr8.1:6737065-6737084 | MS.gene26506:CDS | 30.0% | |
| ATTATATACCCATAAGCAGT+GGG | - | chr8.1:6736298-6736317 | None:intergenic | 30.0% | |
| GAAGGAAAAACAACAATCAA+AGG | - | chr8.1:6738377-6738396 | None:intergenic | 30.0% | |
| GAATAGTACTAAAACCATGT+AGG | - | chr8.1:6736802-6736821 | None:intergenic | 30.0% | |
| TGAATAAATTCCAGGTACAT+GGG | - | chr8.1:6737055-6737074 | None:intergenic | 30.0% | |
| TTCGTACAACAAAACCAAAA+TGG | - | chr8.1:6738420-6738439 | None:intergenic | 30.0% | |
| TTGAAGTTTGCAATCTTGTA+AGG | - | chr8.1:6736051-6736070 | None:intergenic | 30.0% | |
| TTTCATCTCTAATCCAGATT+TGG | + | chr8.1:6738218-6738237 | MS.gene26506:intron | 30.0% | |
| ! | CAAACTTCAACTTTTCTCAT+AGG | + | chr8.1:6736061-6736080 | MS.gene26506:CDS | 30.0% |
| ! | GCATTATCTTTTGTCAGTTA+TGG | + | chr8.1:6737130-6737149 | MS.gene26506:CDS | 30.0% |
| ! | GTTTTCAATGCAGTTCATTA+AGG | - | chr8.1:6737222-6737241 | None:intergenic | 30.0% |
| !!! | CTAATCCAGATTTGGTTTTA+AGG | + | chr8.1:6738226-6738245 | MS.gene26506:intron | 30.0% |
| AACAATCTCCAAAAAGAGCT+TGG | + | chr8.1:6737985-6738004 | MS.gene26506:CDS | 35.0% | |
| AAGTTGCGACAAATGAATCA+AGG | - | chr8.1:6736700-6736719 | None:intergenic | 35.0% | |
| ACAAAAGATAATGCTGCCTT+TGG | - | chr8.1:6737124-6737143 | None:intergenic | 35.0% | |
| ACTATGATCTGATGTGGTTA+TGG | + | chr8.1:6736132-6736151 | MS.gene26506:intron | 35.0% | |
| AGGTTGAGTAACATGAAGAT+AGG | - | chr8.1:6738022-6738041 | None:intergenic | 35.0% | |
| AGTTCAACAACACAAGTACA+AGG | + | chr8.1:6736000-6736019 | MS.gene26506:CDS | 35.0% | |
| AGTTGCGACAAATGAATCAA+GGG | - | chr8.1:6736699-6736718 | None:intergenic | 35.0% | |
| ATCAACGACAAAAAGAACAC+AGG | - | chr8.1:6736880-6736899 | None:intergenic | 35.0% | |
| ATCTGATGTGGTTATGGTAT+TGG | + | chr8.1:6736138-6736157 | MS.gene26506:intron | 35.0% | |
| ATGAAATGAGACGTACATAC+AGG | + | chr8.1:6737706-6737725 | MS.gene26506:intron | 35.0% | |
| CAATCTTGTAAGGAGAAAAG+AGG | - | chr8.1:6736041-6736060 | None:intergenic | 35.0% | |
| CGATAATCCTTGACTATTTC+TGG | - | chr8.1:6737493-6737512 | None:intergenic | 35.0% | |
| CTGAATAAATTCCAGGTACA+TGG | - | chr8.1:6737056-6737075 | None:intergenic | 35.0% | |
| GAACCTAAGAAAAGCTTATG+AGG | + | chr8.1:6738104-6738123 | MS.gene26506:CDS | 35.0% | |
| GAATAAATTCCAGGTACATG+GGG | - | chr8.1:6737054-6737073 | None:intergenic | 35.0% | |
| GAATCGCATTAATAGCTGAT+TGG | - | chr8.1:6737516-6737535 | None:intergenic | 35.0% | |
| GGTGGATATAATAGGAAGTT+AGG | + | chr8.1:6738144-6738163 | MS.gene26506:CDS | 35.0% | |
| GTCAAACAAAAAGTCCTACA+TGG | + | chr8.1:6736785-6736804 | MS.gene26506:intron | 35.0% | |
| TGAGATACCAGAAATAGTCA+AGG | + | chr8.1:6737483-6737502 | MS.gene26506:CDS | 35.0% | |
| TGGAAAAACTGAGTATGACA+AGG | + | chr8.1:6738056-6738075 | MS.gene26506:CDS | 35.0% | |
| TGTACCTGGAATTTATTCAG+AGG | + | chr8.1:6737056-6737075 | MS.gene26506:CDS | 35.0% | |
| TGTTCCTCTGAATAAATTCC+AGG | - | chr8.1:6737063-6737082 | None:intergenic | 35.0% | |
| TTAAACACAATCAGCCTCAT+TGG | - | chr8.1:6736837-6736856 | None:intergenic | 35.0% | |
| TTCCTGTTATACTTGTTCAG+AGG | - | chr8.1:6738267-6738286 | None:intergenic | 35.0% | |
| TTTCCATAAGCTGTATATCG+AGG | - | chr8.1:6738042-6738061 | None:intergenic | 35.0% | |
| TTTGATGGAGTCGAAATTCA+CGG | + | chr8.1:6737730-6737749 | MS.gene26506:CDS | 35.0% | |
| TTTGGTGAGGAAAGGATAAT+CGG | - | chr8.1:6738325-6738344 | None:intergenic | 35.0% | |
| ! | CATGCATCTGATTTTGTCAA+TGG | + | chr8.1:6736666-6736685 | MS.gene26506:intron | 35.0% |
| ! | CATTTAGGATAGTGAAACTG+AGG | - | chr8.1:6737185-6737204 | None:intergenic | 35.0% |
| ! | GATGAACTTGTGAAGCATTT+AGG | - | chr8.1:6737200-6737219 | None:intergenic | 35.0% |
| ! | GTTTTCTACCAAGCTCTTTT+TGG | - | chr8.1:6737996-6738015 | None:intergenic | 35.0% |
| ! | TTCCCTCATAAGCTTTTCTT+AGG | - | chr8.1:6738110-6738129 | None:intergenic | 35.0% |
| ! | TTTTGTCAGTTATGGCATGT+TGG | + | chr8.1:6737138-6737157 | MS.gene26506:CDS | 35.0% |
| !! | GATGCTGATTTGGTATCATT+TGG | + | chr8.1:6738189-6738208 | MS.gene26506:intron | 35.0% |
| !! | TATTTCTGGTATCTCAGAAG+TGG | - | chr8.1:6737479-6737498 | None:intergenic | 35.0% |
| !!! | GGTTTTGTTGTACGAACAAT+TGG | + | chr8.1:6738424-6738443 | MS.gene26506:intron | 35.0% |
| AAGAAGAGGCTCATTTGATG+AGG | + | chr8.1:6738082-6738101 | MS.gene26506:CDS | 40.0% | |
| AATGATCGAACAGACGAGTA+TGG | + | chr8.1:6737796-6737815 | MS.gene26506:CDS | 40.0% | |
| AGCTCCAATACCAGAAACAA+CGG | - | chr8.1:6737869-6737888 | None:intergenic | 40.0% | |
| ATGCAGGTTCTTAATTCAGG+TGG | + | chr8.1:6737837-6737856 | MS.gene26506:CDS | 40.0% | |
| CAACCTCGATATACAGCTTA+TGG | + | chr8.1:6738036-6738055 | MS.gene26506:CDS | 40.0% | |
| CTCCTCTGAACAAGTATAAC+AGG | + | chr8.1:6738262-6738281 | MS.gene26506:intron | 40.0% | |
| CTCTTGAGTCTCATTTCCTT+TGG | - | chr8.1:6738343-6738362 | None:intergenic | 40.0% | |
| GAAACTGAGGTTACCAGAAT+GGG | - | chr8.1:6737172-6737191 | None:intergenic | 40.0% | |
| GATCACTTGAAAATCGATGC+AGG | + | chr8.1:6737821-6737840 | MS.gene26506:CDS | 40.0% | |
| GATTATCCTTTCCTCACCAA+AGG | + | chr8.1:6738324-6738343 | MS.gene26506:intron | 40.0% | |
| GATTCTGATCCACTTGGATT+AGG | + | chr8.1:6737940-6737959 | MS.gene26506:CDS | 40.0% | |
| GCATCATTGTGATCAATTGC+TGG | - | chr8.1:6737916-6737935 | None:intergenic | 40.0% | |
| GGTTCTTAATTCAGGTGGTT+CGG | + | chr8.1:6737842-6737861 | MS.gene26506:CDS | 40.0% | |
| GTATGACAAGGAAGAAGAAG+AGG | + | chr8.1:6738068-6738087 | MS.gene26506:CDS | 40.0% | |
| GTTCTTAATTCAGGTGGTTC+GGG | + | chr8.1:6737843-6737862 | MS.gene26506:CDS | 40.0% | |
| TAATCGGTGTAGCCAATAAC+AGG | - | chr8.1:6738309-6738328 | None:intergenic | 40.0% | |
| TACACACAGGATCCTGTTAT+TGG | + | chr8.1:6738294-6738313 | MS.gene26506:intron | 40.0% | |
| TCATTTCCTTTGGTGAGGAA+AGG | - | chr8.1:6738333-6738352 | None:intergenic | 40.0% | |
| TCGATGCAGGTTCTTAATTC+AGG | + | chr8.1:6737834-6737853 | MS.gene26506:CDS | 40.0% | |
| TGAAACTGAGGTTACCAGAA+TGG | - | chr8.1:6737173-6737192 | None:intergenic | 40.0% | |
| TTATTCAGAGGAACAAGTGG+AGG | + | chr8.1:6737068-6737087 | MS.gene26506:CDS | 40.0% | |
| TTGATGGAGTCGAAATTCAC+GGG | + | chr8.1:6737731-6737750 | MS.gene26506:CDS | 40.0% | |
| ! | AATTCTCCACCTCTCTAGAA+GGG | - | chr8.1:6737407-6737426 | None:intergenic | 40.0% |
| ! | CAGGAAGACATTTTACACAC+AGG | + | chr8.1:6738281-6738300 | MS.gene26506:intron | 40.0% |
| ! | CATCTGATTTTGTCAATGGC+CGG | + | chr8.1:6736670-6736689 | MS.gene26506:intron | 40.0% |
| ! | GGTTTGGTTGTGGATGAAAT+GGG | - | chr8.1:6737385-6737404 | None:intergenic | 40.0% |
| !! | GACGTACATACAGGTTTTGA+TGG | + | chr8.1:6737715-6737734 | MS.gene26506:intron | 40.0% |
| !! | GCTATTGATTCTGATCCACT+TGG | + | chr8.1:6737934-6737953 | MS.gene26506:CDS | 40.0% |
| !! | TGTGCAGTGGTGGATATAAT+AGG | + | chr8.1:6738136-6738155 | MS.gene26506:CDS | 40.0% |
| ACAAATGAATCAAGGGTGGC+CGG | - | chr8.1:6736692-6736711 | None:intergenic | 45.0% | |
| ACACAATCAGCCTCATTGGT+TGG | - | chr8.1:6736833-6736852 | None:intergenic | 45.0% | |
| ACTGCTAAGCCTAATCCAAG+TGG | - | chr8.1:6737952-6737971 | None:intergenic | 45.0% | |
| ATACTCGTGTTGCATCTGCA+CGG | + | chr8.1:6737632-6737651 | MS.gene26506:intron | 45.0% | |
| CTTGTAAGGAGAAAAGAGGG+TGG | - | chr8.1:6736037-6736056 | None:intergenic | 45.0% | |
| GAATTCTCCACCTCTCTAGA+AGG | - | chr8.1:6737408-6737427 | None:intergenic | 45.0% | |
| GAGTCTCATTTCCTTTGGTG+AGG | - | chr8.1:6738338-6738357 | None:intergenic | 45.0% | |
| GCTATTAATGCGATTCGAGC+AGG | + | chr8.1:6737520-6737539 | MS.gene26506:CDS | 45.0% | |
| TACGCTCAAAGATCAACTCC+AGG | + | chr8.1:6736238-6736257 | MS.gene26506:CDS | 45.0% | |
| TATAGGGAAATGTTTGGCGC+AGG | + | chr8.1:6737025-6737044 | MS.gene26506:intron | 45.0% | |
| TCTATCGCTACCAACCAATG+AGG | + | chr8.1:6736820-6736839 | MS.gene26506:intron | 45.0% | |
| TGATGGAGTCGAAATTCACG+GGG | + | chr8.1:6737732-6737751 | MS.gene26506:CDS | 45.0% | |
| TGCGACAAATGAATCAAGGG+TGG | - | chr8.1:6736696-6736715 | None:intergenic | 45.0% | |
| TGGAGAATTCTCAAGCCAGA+TGG | + | chr8.1:6737418-6737437 | MS.gene26506:CDS | 45.0% | |
| TGGGTGACTATGATCTGATG+TGG | + | chr8.1:6736126-6736145 | MS.gene26506:intron | 45.0% | |
| ! | ACTCCAGGTGGATTTCTCAT+CGG | + | chr8.1:6736253-6736272 | MS.gene26506:CDS | 45.0% |
| ! | AGCTCAAGGTGATGCTGATT+TGG | + | chr8.1:6738179-6738198 | MS.gene26506:intron | 45.0% |
| ! | ATTCTCCACCTCTCTAGAAG+GGG | - | chr8.1:6737406-6737425 | None:intergenic | 45.0% |
| ! | GGGTTTGGTTGTGGATGAAA+TGG | - | chr8.1:6737386-6737405 | None:intergenic | 45.0% |
| ! | GGTATTGGAGCTGAAAGAGT+TGG | + | chr8.1:6737877-6737896 | MS.gene26506:CDS | 45.0% |
| ! | GGTTATGGTATTGGAGTGCA+GGG | + | chr8.1:6736147-6736166 | MS.gene26506:intron | 45.0% |
| ! | TATTCAGCAAGTGCTGCGTT+TGG | - | chr8.1:6736217-6736236 | None:intergenic | 45.0% |
| ! | TGGTTATGGTATTGGAGTGC+AGG | + | chr8.1:6736146-6736165 | MS.gene26506:intron | 45.0% |
| !! | AAAAAAAAAAAAAAAAAAGA+AGG | - | chr8.1:6738395-6738414 | None:intergenic | 5.0% |
| !! | AAAATATATAAAAGAAATAT+AGG | + | chr8.1:6736597-6736616 | MS.gene26506:intron | 5.0% |
| AACGCTCTGCATCTCGTCAT+AGG | - | chr8.1:6736184-6736203 | None:intergenic | 50.0% | |
| ATAAGCAGTGGGAGAGATGG+AGG | - | chr8.1:6736287-6736306 | None:intergenic | 50.0% | |
| CCATCTCTCCCACTGCTTAT+GGG | + | chr8.1:6736287-6736306 | MS.gene26506:CDS | 50.0% | |
| CTCAAGCCAGATGGTTCCTA+TGG | + | chr8.1:6737427-6737446 | MS.gene26506:CDS | 50.0% | |
| GAGGGAACATTCATGTGCAG+TGG | + | chr8.1:6738123-6738142 | MS.gene26506:CDS | 50.0% | |
| GATCGAACAGACGAGTATGG+TGG | + | chr8.1:6737799-6737818 | MS.gene26506:CDS | 50.0% | |
| GCTCAAAGATCAACTCCAGG+TGG | + | chr8.1:6736241-6736260 | MS.gene26506:CDS | 50.0% | |
| GGAACATTCATGTGCAGTGG+TGG | + | chr8.1:6738126-6738145 | MS.gene26506:CDS | 50.0% | |
| GGAATGGAAGCTGTAGCTCA+AGG | + | chr8.1:6738165-6738184 | MS.gene26506:CDS | 50.0% | |
| GTGCAGATGCAACACGAGTA+TGG | - | chr8.1:6737633-6737652 | None:intergenic | 50.0% | |
| TACTCGTGTTGCATCTGCAC+GGG | + | chr8.1:6737633-6737652 | MS.gene26506:intron | 50.0% | |
| TATGCGCCATAGGAACCATC+TGG | - | chr8.1:6737436-6737455 | None:intergenic | 50.0% | |
| TCACCGATGAGAAATCCACC+TGG | - | chr8.1:6736259-6736278 | None:intergenic | 50.0% | |
| TCCATCTCTCCCACTGCTTA+TGG | + | chr8.1:6736286-6736305 | MS.gene26506:CDS | 50.0% | |
| TGTGAAGCAGTGTATCAGCC+TGG | + | chr8.1:6737349-6737368 | MS.gene26506:intron | 50.0% | |
| TGTTGCATCTGCACGGGTAT+GGG | + | chr8.1:6737639-6737658 | MS.gene26506:intron | 50.0% | |
| ! | CAACCAAACCCCTTCTAGAG+AGG | + | chr8.1:6737395-6737414 | MS.gene26506:CDS | 50.0% |
| ! | CTCTAGAAGGGGTTTGGTTG+TGG | - | chr8.1:6737395-6737414 | None:intergenic | 50.0% |
| ! | GGTGGATTTCTCATCGGTGA+AGG | + | chr8.1:6736259-6736278 | MS.gene26506:CDS | 50.0% |
| ! | TATGGTATTGGAGTGCAGGG+TGG | + | chr8.1:6736150-6736169 | MS.gene26506:intron | 50.0% |
| !! | ACGAGATGCAGAGCGTTGAA+TGG | + | chr8.1:6736187-6736206 | MS.gene26506:CDS | 50.0% |
| AGGAGAAAAGAGGGTGGTGC+TGG | - | chr8.1:6736031-6736050 | None:intergenic | 55.0% | |
| ATTGGAGTGCAGGGTGGTGT+TGG | + | chr8.1:6736156-6736175 | MS.gene26506:intron | 55.0% | |
| CAGAGGAACAAGTGGAGGCA+TGG | + | chr8.1:6737073-6737092 | MS.gene26506:CDS | 55.0% | |
| CCCATAAGCAGTGGGAGAGA+TGG | - | chr8.1:6736290-6736309 | None:intergenic | 55.0% | |
| GAAGCAGTGTATCAGCCTGG+TGG | + | chr8.1:6737352-6737371 | MS.gene26506:intron | 55.0% | |
| GTCGAAATTCACGGGGCACA+CGG | + | chr8.1:6737739-6737758 | MS.gene26506:CDS | 55.0% | |
| GTGGATGCTGCTCATGCCAA+AGG | + | chr8.1:6737105-6737124 | MS.gene26506:CDS | 55.0% | |
| GTGTTGCATCTGCACGGGTA+TGG | + | chr8.1:6737638-6737657 | MS.gene26506:intron | 55.0% | |
| GTTGGTCGTGCATCCCATTC+TGG | + | chr8.1:6737156-6737175 | MS.gene26506:CDS | 55.0% | |
| TCAGAAGTGGTAAGCGCTCG+AGG | - | chr8.1:6737466-6737485 | None:intergenic | 55.0% | |
| TCGAAATTCACGGGGCACAC+GGG | + | chr8.1:6737740-6737759 | MS.gene26506:CDS | 55.0% | |
| TGGTTCCTATGGCGCATACC+CGG | + | chr8.1:6737438-6737457 | MS.gene26506:CDS | 55.0% | |
| ! | CCAAACCCCTTCTAGAGAGG+TGG | + | chr8.1:6737398-6737417 | MS.gene26506:CDS | 55.0% |
| ! | CCACCTCTCTAGAAGGGGTT+TGG | - | chr8.1:6737401-6737420 | None:intergenic | 55.0% |
| ! | GGAGGCATGGAGAAATGTCG+TGG | + | chr8.1:6737086-6737105 | MS.gene26506:CDS | 55.0% |
| !! | CGGGCCGTTGTTTCTGGTAT+TGG | + | chr8.1:6737862-6737881 | MS.gene26506:CDS | 55.0% |
| CGCAGGTTTCCCCATGTACC+TGG | + | chr8.1:6737042-6737061 | MS.gene26506:intron | 60.0% | |
| GAAATGGGTGCAGCACCACC+AGG | - | chr8.1:6737370-6737389 | None:intergenic | 60.0% | |
| ! | GTGGTTCGGGCCGTTGTTTC+TGG | + | chr8.1:6737856-6737875 | MS.gene26506:CDS | 60.0% |
| AGGCTCCGGGTATGCGCCAT+AGG | - | chr8.1:6737446-6737465 | None:intergenic | 65.0% | |
| GTGGTAAGCGCTCGAGGCTC+CGG | - | chr8.1:6737460-6737479 | None:intergenic | 65.0% | |
| TGGTAAGCGCTCGAGGCTCC+GGG | - | chr8.1:6737459-6737478 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6735979 | 6738619 | 6735979 | ID=MS.gene26506 |
| chr8.1 | mRNA | 6735979 | 6738619 | 6735979 | ID=MS.gene26506.t1;Parent=MS.gene26506 |
| chr8.1 | exon | 6735979 | 6736082 | 6735979 | ID=MS.gene26506.t1.exon1;Parent=MS.gene26506.t1 |
| chr8.1 | CDS | 6735979 | 6736082 | 6735979 | ID=cds.MS.gene26506.t1;Parent=MS.gene26506.t1 |
| chr8.1 | exon | 6736168 | 6736308 | 6736168 | ID=MS.gene26506.t1.exon2;Parent=MS.gene26506.t1 |
| chr8.1 | CDS | 6736168 | 6736308 | 6736168 | ID=cds.MS.gene26506.t1;Parent=MS.gene26506.t1 |
| chr8.1 | exon | 6737047 | 6737177 | 6737047 | ID=MS.gene26506.t1.exon3;Parent=MS.gene26506.t1 |
| chr8.1 | CDS | 6737047 | 6737177 | 6737047 | ID=cds.MS.gene26506.t1;Parent=MS.gene26506.t1 |
| chr8.1 | exon | 6737359 | 6737541 | 6737359 | ID=MS.gene26506.t1.exon4;Parent=MS.gene26506.t1 |
| chr8.1 | CDS | 6737359 | 6737541 | 6737359 | ID=cds.MS.gene26506.t1;Parent=MS.gene26506.t1 |
| chr8.1 | exon | 6737728 | 6738186 | 6737728 | ID=MS.gene26506.t1.exon5;Parent=MS.gene26506.t1 |
| chr8.1 | CDS | 6737728 | 6738186 | 6737728 | ID=cds.MS.gene26506.t1;Parent=MS.gene26506.t1 |
| chr8.1 | exon | 6738606 | 6738619 | 6738606 | ID=MS.gene26506.t1.exon6;Parent=MS.gene26506.t1 |
| chr8.1 | CDS | 6738606 | 6738619 | 6738606 | ID=cds.MS.gene26506.t1;Parent=MS.gene26506.t1 |
| Gene Sequence |
| Protein sequence |
