Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32276.t1 | XP_013445472.1 | 95.2 | 227 | 11 | 0 | 1 | 227 | 1 | 227 | 3.30E-120 | 441 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32276.t1 | Q9Y5Z4 | 34.4 | 186 | 106 | 5 | 38 | 217 | 20 | 195 | 1.7e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32276.t1 | I3S399 | 95.2 | 227 | 11 | 0 | 1 | 227 | 1 | 227 | 2.3e-120 | 441.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene32276 | 0.818656 | 1.75E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene32276 | 0.808087 | 3.68E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene32276 | 0.809649 | 1.70E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene32276 | 0.806385 | 8.44E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene32276 | 0.849782 | 2.59E-60 | -1.69E-46 |
| MS.gene050770 | MS.gene32276 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene32276 | 0.824479 | 7.89E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene32276 | 0.835054 | 2.10E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene32276 | 0.803794 | 2.94E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene32276 | 0.812622 | 3.86E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene32276 | 0.822968 | 1.78E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene32276 | 0.806538 | 7.84E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene32276 | 0.800287 | 1.55E-48 | -1.69E-46 |
| MS.gene052379 | MS.gene32276 | 0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene32276 | 0.803688 | 3.09E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene32276 | 0.830999 | 2.14E-55 | -1.69E-46 |
| MS.gene052508 | MS.gene32276 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene052510 | MS.gene32276 | 0.805419 | 1.35E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene32276 | 0.812085 | 5.06E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene32276 | 0.836652 | 8.25E-57 | -1.69E-46 |
| MS.gene053104 | MS.gene32276 | 0.870038 | 1.97E-66 | -1.69E-46 |
| MS.gene053107 | MS.gene32276 | 0.819355 | 1.21E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene32276 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene32276 | 0.819095 | 1.39E-52 | -1.69E-46 |
| MS.gene053384 | MS.gene32276 | 0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene32276 | 0.860144 | 2.53E-63 | -1.69E-46 |
| MS.gene054376 | MS.gene32276 | 0.803444 | 3.48E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene32276 | 0.80478 | 1.83E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene32276 | 0.813811 | 2.12E-51 | -1.69E-46 |
| MS.gene055212 | MS.gene32276 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene055289 | MS.gene32276 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene32276 | 0.817848 | 2.67E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene32276 | 0.821101 | 4.83E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene32276 | 0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene32276 | 0.853989 | 1.66E-61 | -1.69E-46 |
| MS.gene055956 | MS.gene32276 | -0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene056374 | MS.gene32276 | 0.811335 | 7.37E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene32276 | 0.821697 | 3.52E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene32276 | 0.805342 | 1.40E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene32276 | 0.809503 | 1.83E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene32276 | 0.800208 | 1.60E-48 | -1.69E-46 |
| MS.gene057129 | MS.gene32276 | 0.803499 | 3.39E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene32276 | 0.868613 | 5.73E-66 | -1.69E-46 |
| MS.gene057416 | MS.gene32276 | 0.838444 | 2.86E-57 | -1.69E-46 |
| MS.gene057926 | MS.gene32276 | 0.817332 | 3.48E-52 | -1.69E-46 |
| MS.gene057927 | MS.gene32276 | 0.813605 | 2.35E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene32276 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene058019 | MS.gene32276 | 0.809668 | 1.69E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene32276 | 0.816449 | 5.50E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene32276 | 0.804578 | 2.02E-49 | -1.69E-46 |
| MS.gene059305 | MS.gene32276 | 0.804505 | 2.09E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene32276 | 0.809101 | 2.23E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene32276 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene32276 | 0.843857 | 1.08E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene32276 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene32276 | 0.831407 | 1.70E-55 | -1.69E-46 |
| MS.gene060193 | MS.gene32276 | 0.817965 | 2.51E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene32276 | 0.824792 | 6.66E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene32276 | 0.844891 | 5.71E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene32276 | 0.848661 | 5.32E-60 | -1.69E-46 |
| MS.gene060835 | MS.gene32276 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene32276 | 0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene32276 | 0.810826 | 9.50E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene32276 | 0.811396 | 7.15E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene32276 | 0.82671 | 2.34E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32276.t1 | MTR_8g461390 | 95.154 | 227 | 11 | 0 | 1 | 227 | 1 | 227 | 5.23e-166 | 457 |
| MS.gene32276.t1 | MTR_4g105470 | 41.667 | 180 | 96 | 4 | 39 | 215 | 23 | 196 | 3.83e-33 | 119 |
| MS.gene32276.t1 | MTR_8g069755 | 35.096 | 208 | 121 | 5 | 13 | 215 | 5 | 203 | 1.40e-31 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32276.t1 | AT1G17100 | 60.396 | 202 | 75 | 2 | 25 | 221 | 30 | 231 | 1.87e-90 | 266 |
| MS.gene32276.t1 | AT1G78450 | 48.214 | 224 | 103 | 4 | 4 | 222 | 1 | 216 | 4.99e-71 | 216 |
| MS.gene32276.t1 | AT1G78460 | 41.518 | 224 | 105 | 5 | 11 | 220 | 8 | 219 | 8.87e-50 | 162 |
Find 46 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATCTCAATTTCATTATC+AGG | 0.236313 | 8.3:-48890587 | MS.gene32276:CDS |
| TTCTTGTTTGATTTGGAAAA+TGG | 0.250380 | 8.3:-48889009 | MS.gene32276:CDS |
| GACGTTATAATTCGTCTGTT+TGG | 0.282437 | 8.3:-48890478 | MS.gene32276:CDS |
| TAGGCTATTTGATTACATTC+AGG | 0.303343 | 8.3:-48889409 | MS.gene32276:CDS |
| GGATTTGCTTGGTTCACTTT+TGG | 0.319811 | 8.3:+48889276 | None:intergenic |
| GATATGGTTCTTGTTTGATT+TGG | 0.325272 | 8.3:-48889016 | MS.gene32276:CDS |
| TGAACATGAAGACCCTTTGC+AGG | 0.347285 | 8.3:+48889249 | None:intergenic |
| AATGTCTTGAATAGGAGAAT+TGG | 0.347748 | 8.3:+48890451 | None:intergenic |
| ATTCAAAAGGGGCATTGTAC+TGG | 0.369508 | 8.3:+48889058 | None:intergenic |
| CTTGTTGAAGCTACTAGAAC+TGG | 0.386778 | 8.3:-48890425 | MS.gene32276:CDS |
| ACAAATGAAGACTCACAAAA+TGG | 0.387846 | 8.3:+48889315 | None:intergenic |
| AGCTTCTATGACATCATAGT+TGG | 0.390370 | 8.3:+48890520 | None:intergenic |
| ACCCTATTATCATATTCAAA+AGG | 0.401311 | 8.3:+48889045 | None:intergenic |
| ACAAGAGAAATGTCTTGAAT+AGG | 0.403479 | 8.3:+48890443 | None:intergenic |
| CCCTATTATCATATTCAAAA+GGG | 0.409363 | 8.3:+48889046 | None:intergenic |
| TGCGGAAGCTGCAGCGTTGA+AGG | 0.431888 | 8.3:-48889160 | MS.gene32276:CDS |
| AGGCTATTTGATTACATTCA+GGG | 0.450840 | 8.3:-48889408 | MS.gene32276:CDS |
| TGAAGACCCTTTGCAGGTGG+TGG | 0.452104 | 8.3:+48889255 | None:intergenic |
| TTGCAGGTGGTGGATTTGCT+TGG | 0.453762 | 8.3:+48889265 | None:intergenic |
| AACTATGATGTCATAGAAGC+TGG | 0.463929 | 8.3:-48890518 | MS.gene32276:CDS |
| TATGCAGCAGTTAGACAGTT+TGG | 0.464469 | 8.3:-48889210 | MS.gene32276:CDS |
| ATAATAGGGTGAATGAGATA+TGG | 0.465751 | 8.3:-48889032 | MS.gene32276:CDS |
| GCGTTGAAGGACAGTATTGC+CGG | 0.485645 | 8.3:-48889147 | MS.gene32276:CDS |
| GATGTCATAGAAGCTGGAAA+TGG | 0.490076 | 8.3:-48890512 | MS.gene32276:CDS |
| AGCAAATCCACCACCTGCAA+AGG | 0.503511 | 8.3:-48889262 | MS.gene32276:CDS |
| AGGGTCTTCATGTTCAAAGA+TGG | 0.509198 | 8.3:-48889242 | MS.gene32276:CDS |
| GGTAAGACTTCAGAGAGAAC+AGG | 0.536541 | 8.3:+48889348 | None:intergenic |
| TTCAAAAGGGGCATTGTACT+GGG | 0.538233 | 8.3:+48889059 | None:intergenic |
| AACTCGAAGCATGCAATCCA+TGG | 0.545237 | 8.3:-48890651 | None:intergenic |
| GGACACTCTATGCGTTTGCA+TGG | 0.549178 | 8.3:+48890542 | None:intergenic |
| GCAAATCCACCACCTGCAAA+GGG | 0.549447 | 8.3:-48889261 | MS.gene32276:CDS |
| ATTGAACAAAGCCGTAGAGC+TGG | 0.550259 | 8.3:-48889105 | MS.gene32276:CDS |
| GCTTCTATGACATCATAGTT+GGG | 0.553146 | 8.3:+48890521 | None:intergenic |
| TGAGAGCTTCAATGTTGTGC+TGG | 0.559259 | 8.3:+48890622 | None:intergenic |
| TCACAAAATGGTCCATCACT+TGG | 0.562399 | 8.3:+48889327 | None:intergenic |
| TCTGAAGTCTTACCAAGTGA+TGG | 0.564116 | 8.3:-48889339 | MS.gene32276:CDS |
| GCAGCAGTTAGACAGTTTGG+TGG | 0.565089 | 8.3:-48889207 | MS.gene32276:CDS |
| CTGAAGCATGACCAGCTCTA+CGG | 0.568630 | 8.3:+48889094 | None:intergenic |
| GGCTATTTGATTACATTCAG+GGG | 0.574090 | 8.3:-48889407 | MS.gene32276:CDS |
| TGTTGTGCTGGTTACAGCCA+TGG | 0.575258 | 8.3:+48890634 | None:intergenic |
| TTTGTCAAAGATACAGATGT+TGG | 0.582094 | 8.3:-48889183 | MS.gene32276:CDS |
| AGCAGAAGACCACTTAGTAC+CGG | 0.588835 | 8.3:+48889128 | None:intergenic |
| ACAGTATTGCCGGTACTAAG+TGG | 0.612734 | 8.3:-48889137 | MS.gene32276:CDS |
| CCTATTATCATATTCAAAAG+GGG | 0.627523 | 8.3:+48889047 | None:intergenic |
| CAAAGATACAGATGTTGGTG+CGG | 0.660769 | 8.3:-48889178 | MS.gene32276:CDS |
| ACATGAAGACCCTTTGCAGG+TGG | 0.699868 | 8.3:+48889252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTGAATACATATAAAA+GGG | - | chr8.3:48889487-48889506 | MS.gene32276:intron | 15.0% |
| !! | AATGTGAAATGATTTATATT+TGG | - | chr8.3:48889925-48889944 | MS.gene32276:intron | 15.0% |
| !! | GAAAGTTGAATACATATAAA+AGG | - | chr8.3:48889486-48889505 | MS.gene32276:intron | 20.0% |
| !!! | AAATTAATTGTCTCTAGAAT+TGG | + | chr8.3:48890002-48890021 | None:intergenic | 20.0% |
| !!! | AGTTTTTTCAGTAATAGTTT+AGG | - | chr8.3:48889261-48889280 | MS.gene32276:CDS | 20.0% |
| !!! | TCAATCTTTTTCTTTTTCTT+AGG | - | chr8.3:48890206-48890225 | MS.gene32276:intron | 20.0% |
| ! | AACTAATTCTAACTTGAAGT+TGG | + | chr8.3:48889747-48889766 | None:intergenic | 25.0% |
| ! | ACCCTATTATCATATTCAAA+AGG | + | chr8.3:48890592-48890611 | None:intergenic | 25.0% |
| ! | ATGCTAAAATCAATTGTTTC+TGG | - | chr8.3:48890041-48890060 | MS.gene32276:intron | 25.0% |
| ! | CCCTATTATCATATTCAAAA+GGG | + | chr8.3:48890591-48890610 | None:intergenic | 25.0% |
| ! | CCTATTATCATATTCAAAAG+GGG | + | chr8.3:48890590-48890609 | None:intergenic | 25.0% |
| ! | CTTATCTCAATTTCATTATC+AGG | - | chr8.3:48889047-48889066 | MS.gene32276:CDS | 25.0% |
| ! | TGAACTTAATGATCATTCAT+TGG | + | chr8.3:48890112-48890131 | None:intergenic | 25.0% |
| !! | CCCTTTTGAATATGATAATA+GGG | - | chr8.3:48890588-48890607 | MS.gene32276:CDS | 25.0% |
| !!! | AAGTTTTAATGAAGTGTTTG+TGG | - | chr8.3:48890146-48890165 | MS.gene32276:intron | 25.0% |
| !!! | ACAATTGATTTTAGCATGTT+TGG | + | chr8.3:48890038-48890057 | None:intergenic | 25.0% |
| !!! | TTCTTGTTTGATTTGGAAAA+TGG | - | chr8.3:48890625-48890644 | MS.gene32276:CDS | 25.0% |
| AATGTCTTGAATAGGAGAAT+TGG | + | chr8.3:48889186-48889205 | None:intergenic | 30.0% | |
| ACAAATGAAGACTCACAAAA+TGG | + | chr8.3:48890322-48890341 | None:intergenic | 30.0% | |
| ACAAGAGAAATGTCTTGAAT+AGG | + | chr8.3:48889194-48889213 | None:intergenic | 30.0% | |
| AGGCTATTTGATTACATTCA+GGG | - | chr8.3:48890226-48890245 | MS.gene32276:intron | 30.0% | |
| ATAATAGGGTGAATGAGATA+TGG | - | chr8.3:48890602-48890621 | MS.gene32276:CDS | 30.0% | |
| GATCAAGTTTAGTAACTCTT+CGG | + | chr8.3:48890188-48890207 | None:intergenic | 30.0% | |
| TAGGCTATTTGATTACATTC+AGG | - | chr8.3:48890225-48890244 | MS.gene32276:intron | 30.0% | |
| TAGTGTGATTGGAATTGATT+TGG | - | chr8.3:48889413-48889432 | MS.gene32276:intron | 30.0% | |
| TTTAGTGTAATTACAAGCGT+TGG | - | chr8.3:48889621-48889640 | MS.gene32276:intron | 30.0% | |
| TTTCAAACTATTAGCTGTGT+CGG | + | chr8.3:48889587-48889606 | None:intergenic | 30.0% | |
| TTTGTCAAAGATACAGATGT+TGG | - | chr8.3:48890451-48890470 | MS.gene32276:CDS | 30.0% | |
| ! | CCCCTTTTGAATATGATAAT+AGG | - | chr8.3:48890587-48890606 | MS.gene32276:CDS | 30.0% |
| ! | GATATGGTTCTTGTTTGATT+TGG | - | chr8.3:48890618-48890637 | MS.gene32276:CDS | 30.0% |
| !! | AATTAGTATCTTTTGACTCC+AGG | + | chr8.3:48889724-48889743 | None:intergenic | 30.0% |
| !! | GAGTTTGATTTTGACATGTT+TGG | + | chr8.3:48889802-48889821 | None:intergenic | 30.0% |
| AACTATGATGTCATAGAAGC+TGG | - | chr8.3:48889116-48889135 | MS.gene32276:CDS | 35.0% | |
| AAGTTTAGTAACTCTTCGGA+TGG | + | chr8.3:48890184-48890203 | None:intergenic | 35.0% | |
| AGCTTCTATGACATCATAGT+TGG | + | chr8.3:48889117-48889136 | None:intergenic | 35.0% | |
| AGTTTAGTAACTCTTCGGAT+GGG | + | chr8.3:48890183-48890202 | None:intergenic | 35.0% | |
| GACGTTATAATTCGTCTGTT+TGG | - | chr8.3:48889156-48889175 | MS.gene32276:CDS | 35.0% | |
| GCTTCTATGACATCATAGTT+GGG | + | chr8.3:48889116-48889135 | None:intergenic | 35.0% | |
| GGCTATTTGATTACATTCAG+GGG | - | chr8.3:48890227-48890246 | MS.gene32276:intron | 35.0% | |
| ! | TTAGTGTGTGTTTGGTTTCA+CGG | + | chr8.3:48890088-48890107 | None:intergenic | 35.0% |
| !! | TCATTGGTTTAGTGTGTGTT+TGG | + | chr8.3:48890096-48890115 | None:intergenic | 35.0% |
| !!! | CTACTAGAACTGGTTTTTTG+AGG | - | chr8.3:48889219-48889238 | MS.gene32276:CDS | 35.0% |
| !!! | CTGTCATCTCAATTTTTTGC+TGG | + | chr8.3:48890264-48890283 | None:intergenic | 35.0% |
| ACACTTCCCAACGTAAAAAG+TGG | + | chr8.3:48889828-48889847 | None:intergenic | 40.0% | |
| AGGGTCTTCATGTTCAAAGA+TGG | - | chr8.3:48890392-48890411 | MS.gene32276:intron | 40.0% | |
| CAAAGATACAGATGTTGGTG+CGG | - | chr8.3:48890456-48890475 | MS.gene32276:CDS | 40.0% | |
| CACTTCCCAACGTAAAAAGT+GGG | + | chr8.3:48889827-48889846 | None:intergenic | 40.0% | |
| CTTGTTGAAGCTACTAGAAC+TGG | - | chr8.3:48889209-48889228 | MS.gene32276:CDS | 40.0% | |
| GATGTCATAGAAGCTGGAAA+TGG | - | chr8.3:48889122-48889141 | MS.gene32276:CDS | 40.0% | |
| GGGAGTTGAAAAATCATGTC+TGG | - | chr8.3:48889507-48889526 | MS.gene32276:intron | 40.0% | |
| GTGTTTGCTTCTAGTGTGAT+TGG | - | chr8.3:48889402-48889421 | MS.gene32276:CDS | 40.0% | |
| TATGCAGCAGTTAGACAGTT+TGG | - | chr8.3:48890424-48890443 | MS.gene32276:CDS | 40.0% | |
| TATTAAGCACAGACACTCCT+CGG | + | chr8.3:48889699-48889718 | None:intergenic | 40.0% | |
| TCACAAAATGGTCCATCACT+TGG | + | chr8.3:48890310-48890329 | None:intergenic | 40.0% | |
| ! | TCTGAAGTCTTACCAAGTGA+TGG | - | chr8.3:48890295-48890314 | MS.gene32276:intron | 40.0% |
| !! | ATTCAAAAGGGGCATTGTAC+TGG | + | chr8.3:48890579-48890598 | None:intergenic | 40.0% |
| !! | GGATTTGCTTGGTTCACTTT+TGG | + | chr8.3:48890361-48890380 | None:intergenic | 40.0% |
| !! | TTCAAAAGGGGCATTGTACT+GGG | + | chr8.3:48890578-48890597 | None:intergenic | 40.0% |
| !!! | ACTCTTCCCACTTTTTACGT+TGG | - | chr8.3:48889818-48889837 | MS.gene32276:intron | 40.0% |
| !!! | CTCTTCCCACTTTTTACGTT+GGG | - | chr8.3:48889819-48889838 | MS.gene32276:intron | 40.0% |
| ACAGTATTGCCGGTACTAAG+TGG | - | chr8.3:48890497-48890516 | MS.gene32276:CDS | 45.0% | |
| AGCAGAAGACCACTTAGTAC+CGG | + | chr8.3:48890509-48890528 | None:intergenic | 45.0% | |
| ATTGAACAAAGCCGTAGAGC+TGG | - | chr8.3:48890529-48890548 | MS.gene32276:CDS | 45.0% | |
| GGTAAGACTTCAGAGAGAAC+AGG | + | chr8.3:48890289-48890308 | None:intergenic | 45.0% | |
| TGAACATGAAGACCCTTTGC+AGG | + | chr8.3:48890388-48890407 | None:intergenic | 45.0% | |
| TGAGAGCTTCAATGTTGTGC+TGG | + | chr8.3:48889015-48889034 | None:intergenic | 45.0% | |
| ! | ATGTCTGGAGCTATGAAGCA+CGG | - | chr8.3:48889522-48889541 | MS.gene32276:intron | 45.0% |
| ! | TGTGTGTTTGGTTTCACGGT+GGG | + | chr8.3:48890084-48890103 | None:intergenic | 45.0% |
| !! | GAGGAGTGTCTGTGCTTAAT+AGG | - | chr8.3:48889698-48889717 | MS.gene32276:intron | 45.0% |
| !! | TACAAGCGTTGGTGTCATGT+CGG | - | chr8.3:48889632-48889651 | MS.gene32276:intron | 45.0% |
| ACATGAAGACCCTTTGCAGG+TGG | + | chr8.3:48890385-48890404 | None:intergenic | 50.0% | |
| AGCAAATCCACCACCTGCAA+AGG | - | chr8.3:48890372-48890391 | MS.gene32276:intron | 50.0% | |
| ATACGACACGTGTTCGACAC+TGG | - | chr8.3:48889661-48889680 | MS.gene32276:intron | 50.0% | |
| CTGAAGCATGACCAGCTCTA+CGG | + | chr8.3:48890543-48890562 | None:intergenic | 50.0% | |
| GCAAATCCACCACCTGCAAA+GGG | - | chr8.3:48890373-48890392 | MS.gene32276:intron | 50.0% | |
| GCAGCAGTTAGACAGTTTGG+TGG | - | chr8.3:48890427-48890446 | MS.gene32276:CDS | 50.0% | |
| GCGTTGAAGGACAGTATTGC+CGG | - | chr8.3:48890487-48890506 | MS.gene32276:CDS | 50.0% | |
| GGACACTCTATGCGTTTGCA+TGG | + | chr8.3:48889095-48889114 | None:intergenic | 50.0% | |
| GTGTCTGTGCTTAATAGGCC+TGG | - | chr8.3:48889703-48889722 | MS.gene32276:intron | 50.0% | |
| TACGACACGTGTTCGACACT+GGG | - | chr8.3:48889662-48889681 | MS.gene32276:intron | 50.0% | |
| ! | GTGTGTGTTTGGTTTCACGG+TGG | + | chr8.3:48890085-48890104 | None:intergenic | 50.0% |
| !! | TGTTGTGCTGGTTACAGCCA+TGG | + | chr8.3:48889003-48889022 | None:intergenic | 50.0% |
| !! | TTGCAGGTGGTGGATTTGCT+TGG | + | chr8.3:48890372-48890391 | None:intergenic | 50.0% |
| CTATGAAGCACGGATGCGGA+CGG | - | chr8.3:48889532-48889551 | MS.gene32276:intron | 55.0% | |
| GCACAGACACTCCTCGGATT+AGG | + | chr8.3:48889693-48889712 | None:intergenic | 55.0% | |
| GGAGCTATGAAGCACGGATG+CGG | - | chr8.3:48889528-48889547 | MS.gene32276:intron | 55.0% | |
| TGAAGACCCTTTGCAGGTGG+TGG | + | chr8.3:48890382-48890401 | None:intergenic | 55.0% | |
| ACTGGGACACGCCTAATCCG+AGG | - | chr8.3:48889679-48889698 | MS.gene32276:intron | 60.0% | |
| GACGGACACAGGACACGACA+CGG | - | chr8.3:48889550-48889569 | MS.gene32276:intron | 60.0% | |
| ! | TGCGGAAGCTGCAGCGTTGA+AGG | - | chr8.3:48890474-48890493 | MS.gene32276:CDS | 60.0% |
| GCACGGATGCGGACGGACAC+AGG | - | chr8.3:48889539-48889558 | MS.gene32276:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 48888993 | 48890663 | 48888993 | ID=MS.gene32276 |
| chr8.3 | mRNA | 48888993 | 48890663 | 48888993 | ID=MS.gene32276.t1;Parent=MS.gene32276 |
| chr8.3 | exon | 48890416 | 48890663 | 48890416 | ID=MS.gene32276.t1.exon1;Parent=MS.gene32276.t1 |
| chr8.3 | CDS | 48890416 | 48890663 | 48890416 | ID=cds.MS.gene32276.t1;Parent=MS.gene32276.t1 |
| chr8.3 | exon | 48888993 | 48889428 | 48888993 | ID=MS.gene32276.t1.exon2;Parent=MS.gene32276.t1 |
| chr8.3 | CDS | 48888993 | 48889428 | 48888993 | ID=cds.MS.gene32276.t1;Parent=MS.gene32276.t1 |
| Gene Sequence |
| Protein sequence |
