Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32884.t1 | KEH35809.1 | 93.9 | 921 | 49 | 3 | 1 | 920 | 1 | 915 | 0.00E+00 | 1507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32884.t1 | Q9H1I8 | 24.1 | 502 | 294 | 17 | 105 | 562 | 64 | 522 | 7.8e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32884.t1 | A0A072V1C5 | 93.9 | 921 | 49 | 3 | 1 | 920 | 1 | 915 | 0.0e+00 | 1507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene32884 | 0.828535 | 8.52E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene32884 | 0.828793 | 7.38E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene32884 | 0.810833 | 9.47E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene32884 | 0.819503 | 1.12E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene32884 | 0.808466 | 3.06E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene32884 | 0.801799 | 7.59E-49 | -1.69E-46 |
| MS.gene049801 | MS.gene32884 | 0.826714 | 2.33E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene32884 | 0.842516 | 2.47E-58 | -1.69E-46 |
| MS.gene050084 | MS.gene32884 | 0.814182 | 1.75E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene32884 | 0.823063 | 1.69E-53 | -1.69E-46 |
| MS.gene050361 | MS.gene32884 | 0.835822 | 1.34E-56 | -1.69E-46 |
| MS.gene050551 | MS.gene32884 | 0.804898 | 1.73E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene32884 | 0.811804 | 5.83E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene32884 | 0.851479 | 8.64E-61 | -1.69E-46 |
| MS.gene050737 | MS.gene32884 | 0.826779 | 2.25E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene32884 | 0.822091 | 2.85E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene32884 | 0.816925 | 4.30E-52 | -1.69E-46 |
| MS.gene050962 | MS.gene32884 | 0.811348 | 7.32E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene32884 | 0.809115 | 2.22E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene32884 | 0.847689 | 9.87E-60 | -1.69E-46 |
| MS.gene051209 | MS.gene32884 | 0.811922 | 5.50E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene32884 | 0.821677 | 3.56E-53 | -1.69E-46 |
| MS.gene051856 | MS.gene32884 | 0.81032 | 1.22E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene32884 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene32884 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene32884 | 0.802779 | 4.77E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene32884 | 0.823336 | 1.46E-53 | -1.69E-46 |
| MS.gene052674 | MS.gene32884 | 0.818881 | 1.55E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene32884 | 0.821473 | 3.96E-53 | -1.69E-46 |
| MS.gene052677 | MS.gene32884 | 0.825582 | 4.33E-54 | -1.69E-46 |
| MS.gene052775 | MS.gene32884 | 0.801341 | 9.43E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene32884 | 0.827395 | 1.60E-54 | -1.69E-46 |
| MS.gene052994 | MS.gene32884 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene32884 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene32884 | 0.842257 | 2.89E-58 | -1.69E-46 |
| MS.gene05315 | MS.gene32884 | 0.800272 | 1.56E-48 | -1.69E-46 |
| MS.gene053486 | MS.gene32884 | 0.801431 | 9.03E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene32884 | 0.810507 | 1.11E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene32884 | 0.801215 | 1.00E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene32884 | 0.836152 | 1.11E-56 | -1.69E-46 |
| MS.gene054576 | MS.gene32884 | 0.804709 | 1.90E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene32884 | 0.807226 | 5.61E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene32884 | 0.815825 | 7.58E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene32884 | 0.807992 | 3.85E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene32884 | 0.801731 | 7.84E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene32884 | 0.8426 | 2.34E-58 | -1.69E-46 |
| MS.gene056045 | MS.gene32884 | 0.846034 | 2.80E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene32884 | 0.828251 | 9.97E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene32884 | 0.804586 | 2.01E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene32884 | 0.828904 | 6.94E-55 | -1.69E-46 |
| MS.gene056507 | MS.gene32884 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene32884 | 0.814894 | 1.22E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene32884 | 0.807576 | 4.73E-50 | -1.69E-46 |
| MS.gene057600 | MS.gene32884 | 0.805771 | 1.14E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene32884 | 0.803316 | 3.70E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene32884 | 0.815389 | 9.48E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene32884 | 0.830538 | 2.78E-55 | -1.69E-46 |
| MS.gene058081 | MS.gene32884 | 0.859776 | 3.27E-63 | -1.69E-46 |
| MS.gene058292 | MS.gene32884 | 0.849439 | 3.23E-60 | -1.69E-46 |
| MS.gene058429 | MS.gene32884 | 0.802767 | 4.80E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene32884 | 0.82854 | 8.50E-55 | -1.69E-46 |
| MS.gene058638 | MS.gene32884 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene32884 | 0.808563 | 2.91E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene32884 | 0.802966 | 4.37E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene32884 | 0.817626 | 2.99E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene32884 | 0.803211 | 3.88E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene32884 | 0.800402 | 1.47E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene32884 | 0.817351 | 3.45E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene32884 | 0.805599 | 1.23E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene32884 | 0.805002 | 1.65E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene32884 | 0.81784 | 2.68E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene32884 | 0.86333 | 2.69E-64 | -1.69E-46 |
| MS.gene060310 | MS.gene32884 | 0.807183 | 5.72E-50 | -1.69E-46 |
| MS.gene060373 | MS.gene32884 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene060400 | MS.gene32884 | 0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene32884 | 0.841762 | 3.90E-58 | -1.69E-46 |
| MS.gene06052 | MS.gene32884 | 0.850841 | 1.31E-60 | -1.69E-46 |
| MS.gene060802 | MS.gene32884 | 0.8215 | 3.91E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene32884 | 0.806712 | 7.20E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene32884 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene32884 | 0.82252 | 2.27E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene32884 | 0.841821 | 3.77E-58 | -1.69E-46 |
| MS.gene060935 | MS.gene32884 | 0.819439 | 1.16E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene32884 | 0.82405 | 9.96E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene32884 | 0.823651 | 1.24E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene32884 | 0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene32884 | 0.808953 | 2.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32884.t1 | MTR_3g103040 | 97.286 | 921 | 18 | 3 | 1 | 920 | 1 | 915 | 0.0 | 1831 |
| MS.gene32884.t1 | MTR_3g103040 | 97.347 | 867 | 16 | 3 | 1 | 866 | 1 | 861 | 0.0 | 1720 |
| MS.gene32884.t1 | MTR_3g103040 | 98.204 | 724 | 12 | 1 | 198 | 920 | 1 | 724 | 0.0 | 1462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32884.t1 | AT1G27752 | 51.549 | 904 | 368 | 15 | 1 | 866 | 1 | 872 | 0.0 | 722 |
| MS.gene32884.t1 | AT1G27752 | 48.958 | 672 | 295 | 10 | 212 | 866 | 15 | 655 | 1.48e-170 | 511 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCTCTCCCTCTGTTATT+TGG | 0.136498 | 3.1:-81504673 | None:intergenic |
| TCAACAGCTTTCTGCAATTT+AGG | 0.158835 | 3.1:+81498017 | MS.gene32884:CDS |
| GACTTTCATGTGTTCTGTTT+TGG | 0.172138 | 3.1:+81504999 | MS.gene32884:CDS |
| GGTAACCAATTCCATGTTTC+TGG | 0.178074 | 3.1:+81504526 | MS.gene32884:CDS |
| CAGGCCTGATCCAAGTATTT+TGG | 0.209716 | 3.1:+81504090 | MS.gene32884:CDS |
| GAAGAAATGTTTCCTTCTTA+TGG | 0.219000 | 3.1:-81503226 | None:intergenic |
| ATTCTTTGAATGACCTCTTC+TGG | 0.235306 | 3.1:-81503791 | None:intergenic |
| GAACAACTTAAATATATATC+TGG | 0.239896 | 3.1:+81503578 | MS.gene32884:CDS |
| AAAACGCCTCTAATACAAAA+TGG | 0.245784 | 3.1:+81504299 | MS.gene32884:CDS |
| AGAATGAGATTGGTAAAGTT+TGG | 0.246664 | 3.1:+81503029 | MS.gene32884:CDS |
| GTACAGGTCTTATTTGCTTC+TGG | 0.257207 | 3.1:+81501759 | MS.gene32884:intron |
| GACATGGTGTATTGCTCTTC+TGG | 0.258029 | 3.1:+81504898 | MS.gene32884:CDS |
| TTCAGTATCATTAAGTTTCC+AGG | 0.285176 | 3.1:+81503199 | MS.gene32884:CDS |
| GAAGCTGTCGCTGCTGGTTT+TGG | 0.286863 | 3.1:+81497432 | MS.gene32884:CDS |
| CTTCATCTGTCTGCATGGTT+TGG | 0.298863 | 3.1:-81503667 | None:intergenic |
| TTTCCTTCTTATGGATTTCC+TGG | 0.302068 | 3.1:-81503217 | None:intergenic |
| AGACAATTACAACAACAATA+AGG | 0.304335 | 3.1:+81497230 | MS.gene32884:CDS |
| ACAGAGATCTTTGCAGAATA+TGG | 0.326279 | 3.1:-81503638 | None:intergenic |
| TTAGGGAAGTTGACAAGGTT+GGG | 0.332272 | 3.1:-81497296 | None:intergenic |
| TCGGGGAAATCAAGGGAAAC+AGG | 0.333370 | 3.1:+81504259 | MS.gene32884:CDS |
| CAACAAACTGGTTCTGGTTC+TGG | 0.333487 | 3.1:+81497330 | MS.gene32884:CDS |
| TGGCTTGGTCCTTCCTGTAA+TGG | 0.336786 | 3.1:-81504726 | None:intergenic |
| TCCAGAGAAATGCTTCTTCA+TGG | 0.337644 | 3.1:-81504746 | None:intergenic |
| AGAGGGAGTGGCGGTGGCAG+GGG | 0.340036 | 3.1:+81504559 | MS.gene32884:CDS |
| TCAAATACAAAAGTTTCTAA+TGG | 0.357068 | 3.1:+81503992 | MS.gene32884:CDS |
| GTTACCACCTCCTCCCTTGT+AGG | 0.357080 | 3.1:-81504509 | None:intergenic |
| TTCGTCAGGTAGGGTTCAAC+CGG | 0.357397 | 3.1:+81497368 | MS.gene32884:CDS |
| CTGTTCCAGAAACATGGAAT+TGG | 0.362186 | 3.1:-81504531 | None:intergenic |
| AAGAAATACCTCATCTCAAC+AGG | 0.364953 | 3.1:-81502660 | None:intergenic |
| CTGGAAGAGGGATGCTATCT+AGG | 0.368744 | 3.1:-81503094 | None:intergenic |
| GAATGAGATTGGTAAAGTTT+GGG | 0.371262 | 3.1:+81503030 | MS.gene32884:CDS |
| GGAGAGGGAGTGGCGGTGGC+AGG | 0.373843 | 3.1:+81504557 | MS.gene32884:CDS |
| TTGACTGGTAAAGTCTACTA+TGG | 0.375504 | 3.1:+81504966 | MS.gene32884:CDS |
| GGTCTAAGCGTAGCAGAATC+TGG | 0.375638 | 3.1:+81504193 | MS.gene32884:CDS |
| CTTTGAAGGAGACTATTAAC+AGG | 0.377429 | 3.1:+81503612 | MS.gene32884:CDS |
| AAACAACAACAAACTGGTTC+TGG | 0.379109 | 3.1:+81497324 | MS.gene32884:CDS |
| AGAGGGAGAGGGAGAGGTAG+AGG | 0.379505 | 3.1:+81504682 | MS.gene32884:CDS |
| TATTCCCTGATTACGGTAAA+GGG | 0.381006 | 3.1:+81503732 | MS.gene32884:CDS |
| CCCGCTAACAGCAGTGGACT+TGG | 0.382935 | 3.1:-81503885 | None:intergenic |
| GAAGATGTTAAGAATGAGAT+TGG | 0.384834 | 3.1:+81503019 | MS.gene32884:CDS |
| GAAGGGAGAGGGAGTGGCGG+TGG | 0.388652 | 3.1:+81504553 | MS.gene32884:CDS |
| GACAATTACAACAACAATAA+GGG | 0.388889 | 3.1:+81497231 | MS.gene32884:CDS |
| AGATGCTGAGCTTCCTTGCC+AGG | 0.390370 | 3.1:+81502901 | MS.gene32884:CDS |
| GGGGCTAGAGGGATTGTTGC+TGG | 0.398706 | 3.1:+81498067 | MS.gene32884:CDS |
| ACGATGCAGTTCATCATTAG+AGG | 0.402493 | 3.1:+81500712 | MS.gene32884:CDS |
| AAACGCCTCTAATACAAAAT+GGG | 0.406638 | 3.1:+81504300 | MS.gene32884:CDS |
| AGAGGGAGAGGTAGAGGAAA+GGG | 0.406753 | 3.1:+81504688 | MS.gene32884:CDS |
| TCATTATTGTCCAAAATACT+TGG | 0.412008 | 3.1:-81504100 | None:intergenic |
| GAGGTAGAAACAACCATTAC+AGG | 0.412585 | 3.1:+81504713 | MS.gene32884:CDS |
| AGAATATCTGCTCTGATGAC+TGG | 0.413031 | 3.1:-81503152 | None:intergenic |
| AGGGACCTATTCCCTGATTA+CGG | 0.415459 | 3.1:+81503725 | MS.gene32884:CDS |
| TCTGTCTGCATGGTTTGGTT+CGG | 0.416658 | 3.1:-81503662 | None:intergenic |
| CAAGATGAAGCTGTCGCTGC+TGG | 0.420506 | 3.1:+81497426 | MS.gene32884:CDS |
| CAAATACAAAAGTTTCTAAT+GGG | 0.429323 | 3.1:+81503993 | MS.gene32884:CDS |
| GGCAGGGGAAAGAGAGAAGG+GGG | 0.431243 | 3.1:+81504574 | MS.gene32884:CDS |
| AGTCATCAGAGCAGATATTC+TGG | 0.434434 | 3.1:+81503154 | MS.gene32884:CDS |
| GGAAACATCTTTGTGGCAGC+TGG | 0.434595 | 3.1:-81503113 | None:intergenic |
| CTATTCCCTGATTACGGTAA+AGG | 0.437817 | 3.1:+81503731 | MS.gene32884:CDS |
| CTTTACCGTAATCAGGGAAT+AGG | 0.437909 | 3.1:-81503730 | None:intergenic |
| TTTCTCCTCCTTGGGAAGCA+TGG | 0.441829 | 3.1:+81504935 | MS.gene32884:CDS |
| CAACAACTTTCTGAGATTCA+AGG | 0.442201 | 3.1:-81497479 | None:intergenic |
| AGCAATAGCAATACTTCGTC+AGG | 0.449539 | 3.1:+81497354 | MS.gene32884:CDS |
| GCTAATTCCGTCCATGCAAA+AGG | 0.451122 | 3.1:+81502935 | MS.gene32884:CDS |
| ATTGAGGGATTAAAGCATAA+TGG | 0.451584 | 3.1:+81503284 | MS.gene32884:CDS |
| CTTAGGGAAGTTGACAAGGT+TGG | 0.451960 | 3.1:-81497297 | None:intergenic |
| AGAAATGCTTCTTCATGGCT+TGG | 0.453241 | 3.1:-81504741 | None:intergenic |
| ATCTTTGTGGCAGCTGGAAG+AGG | 0.454654 | 3.1:-81503107 | None:intergenic |
| AGAGGTAGAGGAAAGGGAGG+AGG | 0.456070 | 3.1:+81504694 | MS.gene32884:CDS |
| TTGTCCAAAATACTTGGATC+AGG | 0.456872 | 3.1:-81504094 | None:intergenic |
| TCGAGCACCAGGATCTCTAT+TGG | 0.458199 | 3.1:-81498238 | None:intergenic |
| TGCAGAATTGACAAGATTGC+TGG | 0.460148 | 3.1:+81499646 | MS.gene32884:CDS |
| GCCATGAAGAAGCATTTCTC+TGG | 0.460962 | 3.1:+81504745 | MS.gene32884:CDS |
| AAATGATGCAATTGTGTCAA+TGG | 0.462048 | 3.1:+81502590 | MS.gene32884:CDS |
| AAAGAATTGATACATGGTCT+TGG | 0.465801 | 3.1:+81504439 | MS.gene32884:CDS |
| GCAGGGGAAAGAGAGAAGGG+GGG | 0.466831 | 3.1:+81504575 | MS.gene32884:CDS |
| GCTTTCTGCAATTTAGGAGC+AGG | 0.469684 | 3.1:+81498023 | MS.gene32884:CDS |
| AAGAAGGAAACATTTCTTCA+AGG | 0.470689 | 3.1:+81503230 | MS.gene32884:CDS |
| CAATATATCAAGCAGGATTG+AGG | 0.471607 | 3.1:+81503268 | MS.gene32884:CDS |
| GCCAAGTCCACTGCTGTTAG+CGG | 0.473751 | 3.1:+81503884 | MS.gene32884:CDS |
| AATATATCAAGCAGGATTGA+GGG | 0.474349 | 3.1:+81503269 | MS.gene32884:CDS |
| TTGATACATGGTCTTGGACG+TGG | 0.478904 | 3.1:+81504445 | MS.gene32884:CDS |
| GAGAGGGAGTGGCGGTGGCA+GGG | 0.479141 | 3.1:+81504558 | MS.gene32884:CDS |
| CATTTCTTCAAGGTGTTGAA+AGG | 0.482501 | 3.1:+81503240 | MS.gene32884:CDS |
| TTCCCTCACCGTGGGGCTAG+AGG | 0.483084 | 3.1:+81498055 | MS.gene32884:CDS |
| AATTACAGCTACAAAGTGTC+TGG | 0.483452 | 3.1:+81504364 | MS.gene32884:CDS |
| TTTCCAAGTGGAGCAGATGA+TGG | 0.483469 | 3.1:-81504043 | None:intergenic |
| CTAATACAAAATGGGGCTCT+AGG | 0.483722 | 3.1:+81504308 | MS.gene32884:CDS |
| GATGTTAGCGGGAAAGATAA+AGG | 0.485143 | 3.1:+81503935 | MS.gene32884:CDS |
| TCATAATGATCTGAAGTGCT+TGG | 0.485164 | 3.1:+81503829 | MS.gene32884:CDS |
| CTAATTCCGTCCATGCAAAA+GGG | 0.486927 | 3.1:+81502936 | MS.gene32884:CDS |
| GGGAGAGGTAGAGGAAAGGG+AGG | 0.487848 | 3.1:+81504691 | MS.gene32884:CDS |
| GTGGCAGGGGAAAGAGAGAA+GGG | 0.488538 | 3.1:+81504572 | MS.gene32884:CDS |
| ATGCTTTGCATGCTCAGCCT+TGG | 0.488541 | 3.1:+81500627 | MS.gene32884:CDS |
| CAGAAAATGTCGAATCGTTA+CGG | 0.489738 | 3.1:+81497195 | None:intergenic |
| GCATCAATGACCCTTCTGTC+AGG | 0.490097 | 3.1:-81504021 | None:intergenic |
| ATGTCGAATCGTTACGGTCA+AGG | 0.491585 | 3.1:+81497201 | MS.gene32884:CDS |
| GGAACAGAAGGGAGAGGGAG+TGG | 0.492302 | 3.1:+81504547 | MS.gene32884:CDS |
| GAATGACCTCTTCTGGATTG+TGG | 0.492612 | 3.1:-81503784 | None:intergenic |
| AGCGGGAAAGATAAAGGAAA+AGG | 0.496032 | 3.1:+81503941 | MS.gene32884:CDS |
| AATAACAGAGGGAGAGGGAG+AGG | 0.496230 | 3.1:+81504676 | MS.gene32884:CDS |
| TCCCTCACCGTGGGGCTAGA+GGG | 0.496525 | 3.1:+81498056 | MS.gene32884:CDS |
| GAGAGGGAGAGGTAGAGGAA+AGG | 0.497400 | 3.1:+81504687 | MS.gene32884:CDS |
| GCACATATATCAAACAACTT+TGG | 0.497604 | 3.1:-81499605 | None:intergenic |
| ATGCCATCATCTGCTCCACT+TGG | 0.499405 | 3.1:+81504040 | MS.gene32884:CDS |
| GCTGTTAGCGGGAAAGATAA+AGG | 0.500884 | 3.1:+81503896 | MS.gene32884:CDS |
| TAACTTTAGATATGGGAATG+AGG | 0.504342 | 3.1:+81502878 | MS.gene32884:intron |
| TGGCAGGGGAAAGAGAGAAG+GGG | 0.504607 | 3.1:+81504573 | MS.gene32884:CDS |
| GTGTACTAATTGATGTTAGC+GGG | 0.504771 | 3.1:+81503924 | MS.gene32884:CDS |
| TTCCATGTTTCTGGAACAGA+AGG | 0.505044 | 3.1:+81504535 | MS.gene32884:CDS |
| GTCAGGTAGGGTTCAACCGG+GGG | 0.505227 | 3.1:+81497371 | MS.gene32884:CDS |
| TGGCGCAGAAGACGGTGGAT+TGG | 0.507955 | 3.1:+81497452 | MS.gene32884:CDS |
| AGGTCTTCCAATAGAGATCC+TGG | 0.508009 | 3.1:+81498231 | MS.gene32884:intron |
| GATGACTGGGTCTTCAACAT+TGG | 0.511843 | 3.1:-81503138 | None:intergenic |
| GAATATCTGCTCTGATGACT+GGG | 0.512641 | 3.1:-81503151 | None:intergenic |
| TATTGAACATAATCAACATC+AGG | 0.514043 | 3.1:+81504603 | MS.gene32884:CDS |
| GGCATCTTCATCTGTCTGCA+TGG | 0.518384 | 3.1:-81503672 | None:intergenic |
| ACTGGGTCTTCAACATTGGC+AGG | 0.519457 | 3.1:-81503134 | None:intergenic |
| TCTTGGCGCGGTACAGAAGT+TGG | 0.521142 | 3.1:+81504480 | MS.gene32884:CDS |
| GAAACAGGGACCGGAAACTC+TGG | 0.522351 | 3.1:+81504274 | MS.gene32884:CDS |
| TCCCTTCTGTTCCAGAAACA+TGG | 0.523000 | 3.1:-81504537 | None:intergenic |
| GAAGTTGACAAGGTTGGGGT+CGG | 0.525099 | 3.1:-81497291 | None:intergenic |
| TTCTCTTAGGGAAGTTGACA+AGG | 0.525769 | 3.1:-81497301 | None:intergenic |
| GGTGGCAGGGGAAAGAGAGA+AGG | 0.525868 | 3.1:+81504571 | MS.gene32884:CDS |
| TTTCCAGGAAATCCATAAGA+AGG | 0.527622 | 3.1:+81503214 | MS.gene32884:CDS |
| AAATCAAGGGAAACAGGGAC+CGG | 0.528322 | 3.1:+81504265 | MS.gene32884:CDS |
| GGTCCAAATAACAGAGGGAG+AGG | 0.528474 | 3.1:+81504670 | MS.gene32884:CDS |
| CCAAGTCCACTGCTGTTAGC+GGG | 0.528738 | 3.1:+81503885 | MS.gene32884:CDS |
| AACAACTTAAATATATATCT+GGG | 0.529820 | 3.1:+81503579 | MS.gene32884:CDS |
| GTATCAGCTGGTCGAGCACC+AGG | 0.532811 | 3.1:-81498249 | None:intergenic |
| ACAGTCTCTAATATTGTGGT+TGG | 0.533912 | 3.1:+81502993 | MS.gene32884:CDS |
| GGAATTTCAATATATCAAGC+AGG | 0.534239 | 3.1:+81503261 | MS.gene32884:CDS |
| GATTCCTACAAGGGAGGAGG+TGG | 0.536721 | 3.1:+81504505 | MS.gene32884:CDS |
| AGCATGGCTCATACATTGAC+TGG | 0.536740 | 3.1:+81504951 | MS.gene32884:CDS |
| TCCCTCTAGCCCCACGGTGA+GGG | 0.540839 | 3.1:-81498057 | None:intergenic |
| ATTGGCAGGAAACATCTTTG+TGG | 0.542013 | 3.1:-81503120 | None:intergenic |
| GAAGTGGAGGGTAGAGATCA+AGG | 0.542597 | 3.1:+81504649 | MS.gene32884:CDS |
| CCACAGTACTATGTCAAAGA+TGG | 0.543656 | 3.1:+81504337 | MS.gene32884:CDS |
| GGTATGATTTCCCTCACCGT+GGG | 0.544651 | 3.1:+81498047 | MS.gene32884:CDS |
| AAGCATTTCTCTGGATTGAG+TGG | 0.544793 | 3.1:+81504754 | MS.gene32884:CDS |
| ATCTTTCCCGCTAACAGCAG+TGG | 0.545828 | 3.1:-81503891 | None:intergenic |
| AGCGGGAAAGATAAAGGAAA+AGG | 0.546036 | 3.1:+81503902 | MS.gene32884:CDS |
| TGATACATGGTCTTGGACGT+GGG | 0.546273 | 3.1:+81504446 | MS.gene32884:CDS |
| GCAGCGACAGCTTCATCTTG+CGG | 0.550531 | 3.1:-81497423 | None:intergenic |
| CGGGGAAATCAAGGGAAACA+GGG | 0.551304 | 3.1:+81504260 | MS.gene32884:CDS |
| GCGAATCATGCAACCTGGCA+AGG | 0.551653 | 3.1:-81502914 | None:intergenic |
| TTCTGCAATTTAGGAGCAGG+TGG | 0.552113 | 3.1:+81498026 | MS.gene32884:CDS |
| TAGGGAAGTTGACAAGGTTG+GGG | 0.554340 | 3.1:-81497295 | None:intergenic |
| AACAACTTTCTGAGATTCAA+GGG | 0.557535 | 3.1:-81497478 | None:intergenic |
| CGTCAGGTAGGGTTCAACCG+GGG | 0.558173 | 3.1:+81497370 | MS.gene32884:CDS |
| TCTCTTCCCCTGTTGAGATG+AGG | 0.560513 | 3.1:+81502652 | MS.gene32884:CDS |
| TCGTCAGGTAGGGTTCAACC+GGG | 0.564089 | 3.1:+81497369 | MS.gene32884:CDS |
| TAGCAATACTTCGTCAGGTA+GGG | 0.573778 | 3.1:+81497359 | MS.gene32884:CDS |
| CTCCACTTGGAAAATTTGTG+AGG | 0.575856 | 3.1:+81504053 | MS.gene32884:CDS |
| GCTGTTGAGAAACTCATGTA+GGG | 0.577070 | 3.1:-81498002 | None:intergenic |
| ATAGCAATACTTCGTCAGGT+AGG | 0.577589 | 3.1:+81497358 | MS.gene32884:CDS |
| AAAACCCTTTACCGTAATCA+GGG | 0.581322 | 3.1:-81503736 | None:intergenic |
| TCTGTACCGCGCCAAGAGGA+AGG | 0.584919 | 3.1:-81504474 | None:intergenic |
| TCTTTGTGGCAGCTGGAAGA+GGG | 0.585342 | 3.1:-81503106 | None:intergenic |
| ATCAAGGTCCAAATAACAGA+GGG | 0.586072 | 3.1:+81504665 | MS.gene32884:CDS |
| CTTGGATACTTCATTAGAGA+CGG | 0.588179 | 3.1:+81503847 | MS.gene32884:CDS |
| GGTGTACTAATTGATGTTAG+CGG | 0.589017 | 3.1:+81503923 | MS.gene32884:CDS |
| ATCTGATGATGTTTCTGAAG+TGG | 0.590047 | 3.1:+81504633 | MS.gene32884:CDS |
| ACAGAAGGGAGAGGGAGTGG+CGG | 0.592048 | 3.1:+81504550 | MS.gene32884:CDS |
| ATCCCTCTAGCCCCACGGTG+AGG | 0.593165 | 3.1:-81498058 | None:intergenic |
| TTTGAACTGAGTGTATCAGC+TGG | 0.593405 | 3.1:-81498261 | None:intergenic |
| AACAGAACACATGAAAGTCT+CGG | 0.595548 | 3.1:-81504995 | None:intergenic |
| CGAATCGTTACGGTCAAGGT+AGG | 0.597450 | 3.1:+81497205 | MS.gene32884:CDS |
| AACTTCTGTACCGCGCCAAG+AGG | 0.599243 | 3.1:-81504478 | None:intergenic |
| GCAGATTCCTACAAGGGAGG+AGG | 0.599612 | 3.1:+81504502 | MS.gene32884:CDS |
| TGAGGAAATCTAGAGCCGAC+AGG | 0.601210 | 3.1:+81504071 | MS.gene32884:CDS |
| ATGGGAAGAACCTGACAGAA+GGG | 0.601920 | 3.1:+81504011 | MS.gene32884:CDS |
| TGAGATTGGTAAAGTTTGGG+TGG | 0.606500 | 3.1:+81503033 | MS.gene32884:CDS |
| CTCAGTTCAAAAGATCATGA+AGG | 0.609132 | 3.1:+81498273 | MS.gene32884:CDS |
| GTTTCTGGAACAGAAGGGAG+AGG | 0.609356 | 3.1:+81504541 | MS.gene32884:CDS |
| AATGGGAAGAACCTGACAGA+AGG | 0.610316 | 3.1:+81504010 | MS.gene32884:CDS |
| AGCTGTTGAGAAACTCATGT+AGG | 0.610389 | 3.1:-81498003 | None:intergenic |
| GATACATGGTCTTGGACGTG+GGG | 0.612696 | 3.1:+81504447 | MS.gene32884:CDS |
| CATCGTCACTTAAATAGCAA+AGG | 0.615864 | 3.1:-81503067 | None:intergenic |
| TGACACAGTCTCTAATATTG+TGG | 0.622918 | 3.1:+81502989 | MS.gene32884:CDS |
| GCTCAGAAAGAATTGATACA+TGG | 0.624461 | 3.1:+81504433 | MS.gene32884:CDS |
| GGGCAACCTTCCTCTTGGCG+CGG | 0.625389 | 3.1:+81504468 | MS.gene32884:CDS |
| GAAGTTGGCAGATTCCTACA+AGG | 0.625676 | 3.1:+81504495 | MS.gene32884:CDS |
| TGTATGAGCCATGCTTCCCA+AGG | 0.626489 | 3.1:-81504943 | None:intergenic |
| CAACAATCCCTCTAGCCCCA+CGG | 0.627910 | 3.1:-81498063 | None:intergenic |
| TTCAGGGTGGATATTCGTTG+AGG | 0.631460 | 3.1:+81503553 | MS.gene32884:intron |
| TTTCTGGAACAGAAGGGAGA+GGG | 0.633064 | 3.1:+81504542 | MS.gene32884:CDS |
| TTAGGAACGAATTTCATCTG+TGG | 0.633485 | 3.1:-81497264 | None:intergenic |
| AATACTTGGATCAGGCCTGT+CGG | 0.634432 | 3.1:-81504086 | None:intergenic |
| GTGGACTTGGCTTGTAACTG+TGG | 0.636167 | 3.1:-81503872 | None:intergenic |
| AATTAGCGAATCATGCAACC+TGG | 0.636551 | 3.1:-81502919 | None:intergenic |
| GTCCAAATAACAGAGGGAGA+GGG | 0.637429 | 3.1:+81504671 | MS.gene32884:CDS |
| GCTAAATTATCATGTAACCA+AGG | 0.640792 | 3.1:-81500644 | None:intergenic |
| TGGTATGATTTCCCTCACCG+TGG | 0.642009 | 3.1:+81498046 | MS.gene32884:CDS |
| TGATGATGTTTCTGAAGTGG+AGG | 0.644476 | 3.1:+81504636 | MS.gene32884:CDS |
| GATCAAGGTCCAAATAACAG+AGG | 0.648323 | 3.1:+81504664 | MS.gene32884:CDS |
| TCAGGTAGGGTTCAACCGGG+GGG | 0.651485 | 3.1:+81497372 | MS.gene32884:CDS |
| CTATGACCACAATCCAGAAG+AGG | 0.655302 | 3.1:+81503778 | MS.gene32884:CDS |
| AACGCCTCTAATACAAAATG+GGG | 0.658920 | 3.1:+81504301 | MS.gene32884:CDS |
| CCATCTTTGACATAGTACTG+TGG | 0.659242 | 3.1:-81504337 | None:intergenic |
| TAATTCCGTCCATGCAAAAG+GGG | 0.660109 | 3.1:+81502937 | MS.gene32884:CDS |
| TTTGAAGGAGACTATTAACA+GGG | 0.660401 | 3.1:+81503613 | MS.gene32884:CDS |
| ATGAGCCATGCTTCCCAAGG+AGG | 0.666773 | 3.1:-81504940 | None:intergenic |
| ATCAATCAGACGTATAGACA+TGG | 0.675680 | 3.1:+81504882 | MS.gene32884:CDS |
| GTATGATTTCCCTCACCGTG+GGG | 0.678147 | 3.1:+81498048 | MS.gene32884:CDS |
| AGAAATACCTCATCTCAACA+GGG | 0.678853 | 3.1:-81502659 | None:intergenic |
| TAGAAACAACCATTACAGGA+AGG | 0.681684 | 3.1:+81504717 | MS.gene32884:CDS |
| AAGTTGGCAGATTCCTACAA+GGG | 0.684550 | 3.1:+81504496 | MS.gene32884:CDS |
| TTGGCAGATTCCTACAAGGG+AGG | 0.685644 | 3.1:+81504499 | MS.gene32884:CDS |
| TATACTAATTGATTCTACGT+CGG | 0.693386 | 3.1:+81503964 | MS.gene32884:CDS |
| GATGATGTTTCTGAAGTGGA+GGG | 0.699043 | 3.1:+81504637 | MS.gene32884:CDS |
| GAAATACCTCATCTCAACAG+GGG | 0.699731 | 3.1:-81502658 | None:intergenic |
| ATACATGGTCTTGGACGTGG+GGG | 0.701593 | 3.1:+81504448 | MS.gene32884:CDS |
| TCCATGTTTCTGGAACAGAA+GGG | 0.702506 | 3.1:+81504536 | MS.gene32884:CDS |
| ACAATATCATGAAAACACGA+CGG | 0.757457 | 3.1:-81498117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81497201 | 81505040 | 81497201 | ID=MS.gene32884 |
| chr3.1 | mRNA | 81497201 | 81505040 | 81497201 | ID=MS.gene32884.t1;Parent=MS.gene32884 |
| chr3.1 | exon | 81497201 | 81497564 | 81497201 | ID=MS.gene32884.t1.exon1;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81497201 | 81497564 | 81497201 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81497987 | 81498146 | 81497987 | ID=MS.gene32884.t1.exon2;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81497987 | 81498146 | 81497987 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81498233 | 81498294 | 81498233 | ID=MS.gene32884.t1.exon3;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81498233 | 81498294 | 81498233 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81499573 | 81499667 | 81499573 | ID=MS.gene32884.t1.exon4;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81499573 | 81499667 | 81499573 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81500620 | 81500733 | 81500620 | ID=MS.gene32884.t1.exon5;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81500620 | 81500733 | 81500620 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81501765 | 81501830 | 81501765 | ID=MS.gene32884.t1.exon6;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81501765 | 81501830 | 81501765 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81502576 | 81502673 | 81502576 | ID=MS.gene32884.t1.exon7;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81502576 | 81502673 | 81502576 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81502887 | 81503305 | 81502887 | ID=MS.gene32884.t1.exon8;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81502887 | 81503305 | 81502887 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81503558 | 81504775 | 81503558 | ID=MS.gene32884.t1.exon9;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81503558 | 81504775 | 81503558 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| chr3.1 | exon | 81504874 | 81505040 | 81504874 | ID=MS.gene32884.t1.exon10;Parent=MS.gene32884.t1 |
| chr3.1 | CDS | 81504874 | 81505040 | 81504874 | ID=cds.MS.gene32884.t1;Parent=MS.gene32884.t1 |
| Gene Sequence |
| Protein sequence |
