Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34961.t1 | RHN42339.1 | 85.8 | 337 | 47 | 1 | 1 | 337 | 38 | 373 | 2.10E-171 | 611.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34961.t1 | Q8VYZ2 | 65.6 | 299 | 102 | 1 | 34 | 332 | 31 | 328 | 1.9e-117 | 423.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34961.t1 | A0A396GMG7 | 85.8 | 337 | 47 | 1 | 1 | 337 | 38 | 373 | 1.5e-171 | 611.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene34961 | 0.807659 | 4.54E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene34961 | 0.833138 | 6.33E-56 | -1.69E-46 |
| MS.gene049356 | MS.gene34961 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene34961 | 0.807579 | 4.72E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene34961 | 0.808162 | 3.55E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene34961 | 0.814778 | 1.30E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene34961 | 0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene34961 | 0.809937 | 1.48E-50 | -1.69E-46 |
| MS.gene050464 | MS.gene34961 | 0.813255 | 2.81E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene34961 | 0.808114 | 3.63E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene34961 | 0.818776 | 1.64E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene34961 | 0.841965 | 3.45E-58 | -1.69E-46 |
| MS.gene050971 | MS.gene34961 | 0.825519 | 4.49E-54 | -1.69E-46 |
| MS.gene05105 | MS.gene34961 | 0.854462 | 1.21E-61 | -1.69E-46 |
| MS.gene051255 | MS.gene34961 | 0.816834 | 4.51E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene34961 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene34961 | 0.844499 | 7.28E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene34961 | 0.808555 | 2.92E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene34961 | 0.809211 | 2.12E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene34961 | 0.804447 | 2.15E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene34961 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene34961 | 0.843026 | 1.80E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene34961 | 0.826424 | 2.73E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene34961 | 0.82548 | 4.58E-54 | -1.69E-46 |
| MS.gene052322 | MS.gene34961 | 0.82247 | 2.33E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene34961 | 0.807158 | 5.79E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene34961 | 0.818113 | 2.32E-52 | -1.69E-46 |
| MS.gene052481 | MS.gene34961 | 0.823327 | 1.47E-53 | -1.69E-46 |
| MS.gene052484 | MS.gene34961 | 0.819923 | 9.00E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene34961 | 0.842984 | 1.85E-58 | -1.69E-46 |
| MS.gene052982 | MS.gene34961 | 0.811468 | 6.90E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene34961 | 0.804965 | 1.68E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene34961 | 0.816342 | 5.81E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene34961 | 0.806171 | 9.36E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene34961 | 0.823309 | 1.48E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene34961 | 0.817637 | 2.97E-52 | -1.69E-46 |
| MS.gene053813 | MS.gene34961 | 0.815833 | 7.55E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene34961 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene34961 | 0.807033 | 6.16E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene34961 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene34961 | 0.807829 | 4.17E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene34961 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene34961 | 0.824867 | 6.39E-54 | -1.69E-46 |
| MS.gene055412 | MS.gene34961 | 0.804603 | 2.00E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene34961 | 0.801544 | 8.56E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene34961 | 0.802842 | 4.63E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene34961 | 0.827478 | 1.53E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene34961 | 0.842949 | 1.89E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene34961 | 0.833419 | 5.39E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene34961 | 0.832789 | 7.73E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene34961 | 0.823342 | 1.46E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene34961 | 0.804264 | 2.35E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene34961 | 0.821477 | 3.95E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene34961 | 0.808869 | 2.51E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene34961 | 0.835658 | 1.48E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene34961 | 0.844849 | 5.86E-59 | -1.69E-46 |
| MS.gene058019 | MS.gene34961 | 0.801333 | 9.46E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene34961 | 0.800789 | 1.22E-48 | -1.69E-46 |
| MS.gene058293 | MS.gene34961 | 0.80132 | 9.52E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene34961 | 0.817407 | 3.35E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene34961 | 0.836069 | 1.16E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene34961 | 0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene34961 | 0.848626 | 5.44E-60 | -1.69E-46 |
| MS.gene058948 | MS.gene34961 | 0.801529 | 8.62E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene34961 | 0.852202 | 5.39E-61 | -1.69E-46 |
| MS.gene059294 | MS.gene34961 | 0.825333 | 4.96E-54 | -1.69E-46 |
| MS.gene059366 | MS.gene34961 | 0.806955 | 6.40E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene34961 | 0.812101 | 5.02E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene34961 | 0.85213 | 5.65E-61 | -1.69E-46 |
| MS.gene059597 | MS.gene34961 | 0.804977 | 1.67E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene34961 | 0.82705 | 1.94E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene34961 | 0.848175 | 7.24E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene34961 | 0.830302 | 3.17E-55 | -1.69E-46 |
| MS.gene059695 | MS.gene34961 | 0.837983 | 3.77E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene34961 | 0.817566 | 3.09E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene34961 | 0.808542 | 2.94E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene34961 | 0.828974 | 6.67E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene34961 | 0.814857 | 1.24E-51 | -1.69E-46 |
| MS.gene060818 | MS.gene34961 | 0.813076 | 3.07E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene34961 | 0.810955 | 8.91E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene34961 | 0.847195 | 1.35E-59 | -1.69E-46 |
| MS.gene060986 | MS.gene34961 | 0.807127 | 5.88E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene34961 | 0.801557 | 8.51E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene34961 | -0.808725 | 2.69E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene34961 | 0.826947 | 2.05E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene34961 | 0.811607 | 6.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34961.t1 | MTR_8g107620 | 62.829 | 304 | 113 | 0 | 34 | 337 | 37 | 340 | 3.06e-142 | 406 |
| MS.gene34961.t1 | MTR_8g107620 | 64.979 | 237 | 83 | 0 | 34 | 270 | 37 | 273 | 1.56e-113 | 331 |
| MS.gene34961.t1 | MTR_8g107620 | 51.974 | 304 | 105 | 2 | 34 | 337 | 37 | 299 | 1.78e-107 | 316 |
| MS.gene34961.t1 | MTR_0200s0050 | 63.426 | 216 | 78 | 1 | 122 | 337 | 6 | 220 | 2.75e-99 | 292 |
| MS.gene34961.t1 | MTR_6g071695 | 54.098 | 122 | 46 | 2 | 2 | 123 | 6 | 117 | 2.70e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34961.t1 | AT2G01890 | 61.231 | 325 | 125 | 1 | 8 | 332 | 5 | 328 | 7.41e-146 | 415 |
| MS.gene34961.t1 | AT1G14700 | 60.303 | 330 | 121 | 5 | 13 | 339 | 41 | 363 | 1.21e-143 | 410 |
| MS.gene34961.t1 | AT3G17790 | 56.325 | 332 | 138 | 3 | 7 | 334 | 5 | 333 | 9.73e-142 | 405 |
| MS.gene34961.t1 | AT2G01880 | 61.321 | 318 | 120 | 3 | 18 | 333 | 8 | 324 | 2.31e-141 | 403 |
| MS.gene34961.t1 | AT1G14700 | 59.697 | 330 | 121 | 6 | 13 | 339 | 41 | 361 | 1.60e-140 | 402 |
| MS.gene34961.t1 | AT1G25230 | 59.677 | 310 | 119 | 1 | 36 | 339 | 27 | 336 | 2.81e-137 | 393 |
| MS.gene34961.t1 | AT1G25230 | 59.677 | 310 | 119 | 1 | 36 | 339 | 50 | 359 | 6.27e-137 | 393 |
| MS.gene34961.t1 | AT1G14700 | 65.056 | 269 | 91 | 2 | 72 | 339 | 1 | 267 | 2.89e-129 | 370 |
| MS.gene34961.t1 | AT2G01890 | 65.649 | 262 | 90 | 0 | 72 | 333 | 1 | 262 | 1.62e-128 | 369 |
| MS.gene34961.t1 | AT2G01890 | 56.000 | 325 | 114 | 2 | 8 | 332 | 5 | 300 | 1.51e-124 | 360 |
| MS.gene34961.t1 | AT1G25230 | 61.194 | 268 | 104 | 0 | 72 | 339 | 1 | 268 | 7.29e-124 | 357 |
| MS.gene34961.t1 | AT1G14700 | 62.055 | 253 | 89 | 3 | 13 | 263 | 41 | 288 | 5.58e-115 | 335 |
Find 50 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATAGGTGTGCTCTTT+TGG | 0.177187 | 4.4:+17820003 | None:intergenic |
| GCAGCTTCTTCCCATCTTAA+AGG | 0.266349 | 4.4:-17819497 | MS.gene34961:intron |
| GGTAAAACTTCACTTCTTCC+AGG | 0.341025 | 4.4:+17819016 | None:intergenic |
| CCCCGAGCCTGCAAAAGATT+TGG | 0.369661 | 4.4:-17820606 | MS.gene34961:CDS |
| AGGAAACTACAATCAATCTT+TGG | 0.388602 | 4.4:-17821210 | MS.gene34961:CDS |
| TGATCCATTTACCTTTAAGA+TGG | 0.409186 | 4.4:+17819486 | None:intergenic |
| TGGTGCAATCCAAGGCAAAA+TGG | 0.410813 | 4.4:-17819588 | MS.gene34961:CDS |
| TCAATCTTTGGTCGCCCATC+AGG | 0.411471 | 4.4:-17821198 | MS.gene34961:intron |
| ACACTAGAATGGAAGATAAC+AGG | 0.413725 | 4.4:+17821356 | None:intergenic |
| GATTTGTAGATGGGAATTGT+AGG | 0.414707 | 4.4:-17820742 | MS.gene34961:intron |
| TTATCGTGCAGAACTCTTGA+AGG | 0.422587 | 4.4:-17819956 | MS.gene34961:intron |
| GTAGAATGTTGATTCAGCTT+TGG | 0.428724 | 4.4:-17819608 | MS.gene34961:intron |
| CAAAAGAGCACACCTATGAT+TGG | 0.439184 | 4.4:-17820002 | MS.gene34961:CDS |
| ATCAAAAGTGTTGGGCATCA+TGG | 0.462730 | 4.4:-17819541 | MS.gene34961:CDS |
| CTGCAAAAGATTTGGTATAG+TGG | 0.480578 | 4.4:-17820598 | MS.gene34961:intron |
| ATTCATTTCTTCACAAGTGA+AGG | 0.486608 | 4.4:-17819078 | MS.gene34961:CDS |
| AAGGACACCATTCCAATCAT+AGG | 0.489134 | 4.4:+17819990 | None:intergenic |
| ATCATACCATCAAAAGTGTT+GGG | 0.491747 | 4.4:-17819549 | MS.gene34961:CDS |
| TTTAGATGGTGTTCAAACCT+TGG | 0.498027 | 4.4:+17821284 | None:intergenic |
| CGATATCAAGTCATGGAACC+TGG | 0.498083 | 4.4:-17819034 | MS.gene34961:CDS |
| AAGTTAAGAGATTGTTGTTG+TGG | 0.499896 | 4.4:+17821260 | None:intergenic |
| GTCGGAGATTGGGGAAGAAA+AGG | 0.511677 | 4.4:-17821230 | MS.gene34961:CDS |
| TTGCTGCTGAGAAGCTTCCA+AGG | 0.511973 | 4.4:-17821301 | MS.gene34961:CDS |
| CATTTCTTCACAAGTGAAGG+TGG | 0.513846 | 4.4:-17819075 | MS.gene34961:CDS |
| GATCCATTTACCTTTAAGAT+GGG | 0.516464 | 4.4:+17819487 | None:intergenic |
| CATCATACCATCAAAAGTGT+TGG | 0.519638 | 4.4:-17819550 | MS.gene34961:CDS |
| TTCAGCTTTGGTGCAATCCA+AGG | 0.528201 | 4.4:-17819596 | MS.gene34961:CDS |
| ACAAATGATTCATAGAATGT+AGG | 0.528252 | 4.4:+17820643 | None:intergenic |
| AGCGTAATACTACACTAGAA+TGG | 0.529661 | 4.4:+17821345 | None:intergenic |
| CAACATCACCCCTGTAGTCA+TGG | 0.535679 | 4.4:+17820449 | None:intergenic |
| GGGGTAAATGATTACCTGAT+GGG | 0.540759 | 4.4:+17821184 | None:intergenic |
| ACATGAATCCTTGTCCATCA+TGG | 0.549619 | 4.4:+17818995 | None:intergenic |
| AAGCTTCTCAGCAGCAACAA+TGG | 0.549652 | 4.4:+17821307 | None:intergenic |
| CACAAGTGAAGGTGGATCAA+AGG | 0.553945 | 4.4:-17819067 | MS.gene34961:CDS |
| CAAGGCAAAATGGAAGATAG+TGG | 0.570741 | 4.4:-17819578 | MS.gene34961:CDS |
| AGCACATAATTGACAACGAA+AGG | 0.573877 | 4.4:-17819193 | MS.gene34961:intron |
| TGGTTCTGAAAGACATGGCA+CGG | 0.577625 | 4.4:-17821403 | None:intergenic |
| AATATTGATGCATACATCAA+CGG | 0.582530 | 4.4:-17819233 | MS.gene34961:CDS |
| TTTGGGTAACCATGACTACA+GGG | 0.585069 | 4.4:-17820458 | MS.gene34961:CDS |
| TGGTAATACACAAGAGCTTG+AGG | 0.597820 | 4.4:-17819521 | MS.gene34961:CDS |
| CACGATAAGATTCACGAGGA+AGG | 0.605639 | 4.4:+17819971 | None:intergenic |
| GGCAAAATGGAAGATAGTGG+TGG | 0.614472 | 4.4:-17819575 | MS.gene34961:CDS |
| GAGCACACCTATGATTGGAA+TGG | 0.624719 | 4.4:-17819997 | MS.gene34961:CDS |
| GGCGAGGCGATATCAAGTCA+TGG | 0.627535 | 4.4:-17819041 | MS.gene34961:CDS |
| CAATTATGTGCTGCAAACAA+TGG | 0.630087 | 4.4:+17819204 | None:intergenic |
| GTGAAGGTGGATCAAAGGCA+TGG | 0.631356 | 4.4:-17819062 | MS.gene34961:CDS |
| GCAAAATGGAAGATAGTGGT+GGG | 0.652491 | 4.4:-17819574 | MS.gene34961:CDS |
| GGTGGATCAAAGGCATGGCG+AGG | 0.657558 | 4.4:-17819057 | MS.gene34961:CDS |
| TTGGGTAACCATGACTACAG+GGG | 0.715140 | 4.4:-17820457 | MS.gene34961:CDS |
| TCTGCACGATAAGATTCACG+AGG | 0.785903 | 4.4:+17819967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAAAATAAATATTTTCAT+TGG | + | chr4.4:17819770-17819789 | None:intergenic | 10.0% |
| !!! | TAAAAAAATGTTTGTTTTTA+AGG | - | chr4.4:17819972-17819991 | MS.gene34961:CDS | 10.0% |
| !!! | TGAAAATAAATATTTTCATT+GGG | + | chr4.4:17819769-17819788 | None:intergenic | 10.0% |
| !!! | TTAAAAACAAACATTTTTTT+AGG | + | chr4.4:17819973-17819992 | None:intergenic | 10.0% |
| !!! | TTTTATAGAAAAGTATTTTA+CGG | - | chr4.4:17820243-17820262 | MS.gene34961:intron | 10.0% |
| !! | ACAGTTAATTAACAAATTAA+AGG | - | chr4.4:17819321-17819340 | MS.gene34961:intron | 15.0% |
| !! | ATTACATATATAAAATGGTT+AGG | - | chr4.4:17819247-17819266 | MS.gene34961:intron | 15.0% |
| !! | TGTCTATTACATATATAAAA+TGG | - | chr4.4:17819242-17819261 | MS.gene34961:CDS | 15.0% |
| !! | TTACATATATAAAATGGTTA+GGG | - | chr4.4:17819248-17819267 | MS.gene34961:intron | 15.0% |
| !!! | ATTTTCAATATCTAACATTT+TGG | - | chr4.4:17820528-17820547 | MS.gene34961:intron | 15.0% |
| !!! | GTAAAATACTTTTCTATAAA+AGG | + | chr4.4:17820244-17820263 | None:intergenic | 15.0% |
| !!! | TGCATTAGATATTTTTTAAA+AGG | + | chr4.4:17819931-17819950 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATATCTAATGC+AGG | - | chr4.4:17819930-17819949 | MS.gene34961:intron | 15.0% |
| !! | AAATTTGATTCCAAAAAATC+TGG | - | chr4.4:17820006-17820025 | MS.gene34961:CDS | 20.0% |
| !! | AATACACACATAATTAAAAG+AGG | + | chr4.4:17819122-17819141 | None:intergenic | 20.0% |
| !! | ACATTATTTATTCTCTACTA+TGG | + | chr4.4:17820446-17820465 | None:intergenic | 20.0% |
| !!! | AATTGTAGAATTTTTCTTTG+TGG | - | chr4.4:17820210-17820229 | MS.gene34961:intron | 20.0% |
| !!! | ATTTTTGTTTGATTTGTAGA+TGG | - | chr4.4:17819519-17819538 | MS.gene34961:CDS | 20.0% |
| !!! | TATCTTTTTGTCTTAGAATT+GGG | + | chr4.4:17819861-17819880 | None:intergenic | 20.0% |
| !!! | TATTTTGTAACCAGATTTTT+TGG | + | chr4.4:17820019-17820038 | None:intergenic | 20.0% |
| !!! | TGGAATCAAATTTTATTTAG+AGG | + | chr4.4:17819999-17820018 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTGATTTGTAGAT+GGG | - | chr4.4:17819520-17819539 | MS.gene34961:CDS | 20.0% |
| ! | AAACACACGTTTATATTTCT+TGG | - | chr4.4:17820048-17820067 | MS.gene34961:CDS | 25.0% |
| ! | AATATTGATGCATACATCAA+CGG | - | chr4.4:17821038-17821057 | MS.gene34961:intron | 25.0% |
| ! | ACAAATGATTCATAGAATGT+AGG | + | chr4.4:17819631-17819650 | None:intergenic | 25.0% |
| ! | ATATAAAATGGTTAGGGATT+TGG | - | chr4.4:17819254-17819273 | MS.gene34961:intron | 25.0% |
| ! | GATGTGAAGTAAAAAATATG+AGG | + | chr4.4:17820858-17820877 | None:intergenic | 25.0% |
| !! | ACAACAATCTCTTAACTTTT+TGG | - | chr4.4:17819016-17819035 | MS.gene34961:CDS | 25.0% |
| !! | CTATCTTTTTGTCTTAGAAT+TGG | + | chr4.4:17819862-17819881 | None:intergenic | 25.0% |
| !! | TTGAGATCTTTTATTCTTGA+TGG | - | chr4.4:17819895-17819914 | MS.gene34961:intron | 25.0% |
| !!! | TTTTTTTTGTTGCCAGTTTT+GGG | - | chr4.4:17819796-17819815 | MS.gene34961:intron | 25.0% |
| !!! | TTTTTTTTTGTTGCCAGTTT+TGG | - | chr4.4:17819795-17819814 | MS.gene34961:intron | 25.0% |
| AAGACAAAAAGATAGCAGAT+GGG | - | chr4.4:17819867-17819886 | MS.gene34961:intron | 30.0% | |
| AATATGCAAATTCAGACTTC+TGG | - | chr4.4:17820502-17820521 | MS.gene34961:intron | 30.0% | |
| AATTAAAAGAGGATGGAGTT+TGG | + | chr4.4:17819111-17819130 | None:intergenic | 30.0% | |
| AGGAAACTACAATCAATCTT+TGG | - | chr4.4:17819061-17819080 | MS.gene34961:CDS | 30.0% | |
| AGTGTAAAGTGAGAAAATGA+AGG | + | chr4.4:17819398-17819417 | None:intergenic | 30.0% | |
| ATGCATCAATATTGTTTGAC+TGG | + | chr4.4:17821031-17821050 | None:intergenic | 30.0% | |
| ATTAAAAGAGGATGGAGTTT+GGG | + | chr4.4:17819110-17819129 | None:intergenic | 30.0% | |
| ATTCATTTCTTCACAAGTGA+AGG | - | chr4.4:17821193-17821212 | MS.gene34961:intron | 30.0% | |
| CACACATAATTAAAAGAGGA+TGG | + | chr4.4:17819118-17819137 | None:intergenic | 30.0% | |
| GTTAATTCTATCTGACATTC+TGG | - | chr4.4:17820633-17820652 | MS.gene34961:CDS | 30.0% | |
| TAAGACAAAAAGATAGCAGA+TGG | - | chr4.4:17819866-17819885 | MS.gene34961:intron | 30.0% | |
| TACATGGTAGTTAACATCAA+AGG | - | chr4.4:17820914-17820933 | MS.gene34961:intron | 30.0% | |
| ! | AAGTTAAGAGATTGTTGTTG+TGG | + | chr4.4:17819014-17819033 | None:intergenic | 30.0% |
| ! | AGATCTTTTATTCTTGATGG+AGG | - | chr4.4:17819898-17819917 | MS.gene34961:intron | 30.0% |
| ! | ATAGATTTTGTGATCTCAAC+TGG | - | chr4.4:17819565-17819584 | MS.gene34961:CDS | 30.0% |
| ! | GGTGACAATTTTTACAAAGA+TGG | - | chr4.4:17819586-17819605 | MS.gene34961:CDS | 30.0% |
| ! | GTTGTATTCTATGACGTTTT+TGG | - | chr4.4:17821328-17821347 | MS.gene34961:CDS | 30.0% |
| ! | TAAGAGTTACATGTTTGCTA+TGG | + | chr4.4:17820947-17820966 | None:intergenic | 30.0% |
| ! | TCAATATGAGAATGATAACG+TGG | + | chr4.4:17820812-17820831 | None:intergenic | 30.0% |
| ! | TGATCCATTTACCTTTAAGA+TGG | + | chr4.4:17820788-17820807 | None:intergenic | 30.0% |
| ! | TTTTACAAAGATGGTCTAGA+AGG | - | chr4.4:17819595-17819614 | MS.gene34961:CDS | 30.0% |
| !! | AAATGAGTTACTGACTTTAG+AGG | + | chr4.4:17819282-17819301 | None:intergenic | 30.0% |
| !! | ATCATACCATCAAAAGTGTT+GGG | - | chr4.4:17820722-17820741 | MS.gene34961:CDS | 30.0% |
| !! | GATCCATTTACCTTTAAGAT+GGG | + | chr4.4:17820787-17820806 | None:intergenic | 30.0% |
| !!! | ATTGTTGTTGTGGTTTTAGA+TGG | + | chr4.4:17819004-17819023 | None:intergenic | 30.0% |
| AAAAGTTATCGAGTGTGTCA+CGG | - | chr4.4:17820415-17820434 | MS.gene34961:CDS | 35.0% | |
| ACAATTCCTGCACAAAAAAG+TGG | + | chr4.4:17820196-17820215 | None:intergenic | 35.0% | |
| ACACTAGAATGGAAGATAAC+AGG | + | chr4.4:17818918-17818937 | None:intergenic | 35.0% | |
| AGCACATAATTGACAACGAA+AGG | - | chr4.4:17821078-17821097 | MS.gene34961:intron | 35.0% | |
| AGCGTAATACTACACTAGAA+TGG | + | chr4.4:17818929-17818948 | None:intergenic | 35.0% | |
| CAATTATGTGCTGCAAACAA+TGG | + | chr4.4:17821070-17821089 | None:intergenic | 35.0% | |
| CTACGATGTTTAAGCAAACA+AGG | + | chr4.4:17821169-17821188 | None:intergenic | 35.0% | |
| CTTCCCATCTTAAAGGTAAA+TGG | - | chr4.4:17820781-17820800 | MS.gene34961:intron | 35.0% | |
| GATTTGTAGATGGGAATTGT+AGG | - | chr4.4:17819529-17819548 | MS.gene34961:CDS | 35.0% | |
| TGGAAAGATAGTGTAGAAAG+TGG | + | chr4.4:17821011-17821030 | None:intergenic | 35.0% | |
| TGTTTGCTTAAACATCGTAG+TGG | - | chr4.4:17821169-17821188 | MS.gene34961:intron | 35.0% | |
| TTAAAAGAGGATGGAGTTTG+GGG | + | chr4.4:17819109-17819128 | None:intergenic | 35.0% | |
| TTTAGATGGTGTTCAAACCT+TGG | + | chr4.4:17818990-17819009 | None:intergenic | 35.0% | |
| ! | CACTATACCAAATCTTTTGC+AGG | + | chr4.4:17819675-17819694 | None:intergenic | 35.0% |
| ! | CATCATACCATCAAAAGTGT+TGG | - | chr4.4:17820721-17820740 | MS.gene34961:CDS | 35.0% |
| ! | CTGCAAAAGATTTGGTATAG+TGG | - | chr4.4:17819673-17819692 | MS.gene34961:intron | 35.0% |
| ! | GAAGTGAAGTTTTACCATGA+TGG | - | chr4.4:17821262-17821281 | MS.gene34961:CDS | 35.0% |
| !! | GTAGAATGTTGATTCAGCTT+TGG | - | chr4.4:17820663-17820682 | MS.gene34961:CDS | 35.0% |
| !! | GTTACATGTTTGCTATGGTT+CGG | + | chr4.4:17820942-17820961 | None:intergenic | 35.0% |
| !! | TCTCTTAACTTTTTGGTCGT+CGG | - | chr4.4:17819023-17819042 | MS.gene34961:CDS | 35.0% |
| !!! | AAGTTTTACCATGATGGACA+AGG | - | chr4.4:17821268-17821287 | MS.gene34961:CDS | 35.0% |
| !!! | ATTCTATGACGTTTTTGGCA+AGG | - | chr4.4:17821333-17821352 | MS.gene34961:CDS | 35.0% |
| !!! | TGTCGCTGCTTTAAGTTTTT+TGG | + | chr4.4:17821380-17821399 | None:intergenic | 35.0% |
| AAAATGATTCCGAGGACACA+TGG | - | chr4.4:17820879-17820898 | MS.gene34961:intron | 40.0% | |
| AAGGACACCATTCCAATCAT+AGG | + | chr4.4:17820284-17820303 | None:intergenic | 40.0% | |
| ACATGAATCCTTGTCCATCA+TGG | + | chr4.4:17821279-17821298 | None:intergenic | 40.0% | |
| CAAGGCAAAATGGAAGATAG+TGG | - | chr4.4:17820693-17820712 | MS.gene34961:CDS | 40.0% | |
| CATTTCTTCACAAGTGAAGG+TGG | - | chr4.4:17821196-17821215 | MS.gene34961:intron | 40.0% | |
| GGGGTAAATGATTACCTGAT+GGG | + | chr4.4:17819090-17819109 | None:intergenic | 40.0% | |
| GGTAAAACTTCACTTCTTCC+AGG | + | chr4.4:17821258-17821277 | None:intergenic | 40.0% | |
| TAGTCATGGTTACCCAAAAC+TGG | + | chr4.4:17819811-17819830 | None:intergenic | 40.0% | |
| TCACATCGAAAATGATTCCG+AGG | - | chr4.4:17820871-17820890 | MS.gene34961:intron | 40.0% | |
| TGGAGTATAACTATCACACG+AGG | - | chr4.4:17819426-17819445 | MS.gene34961:intron | 40.0% | |
| TGGGGTAAATGATTACCTGA+TGG | + | chr4.4:17819091-17819110 | None:intergenic | 40.0% | |
| TGGTAATACACAAGAGCTTG+AGG | - | chr4.4:17820750-17820769 | MS.gene34961:intron | 40.0% | |
| TTATCGTGCAGAACTCTTGA+AGG | - | chr4.4:17820315-17820334 | MS.gene34961:intron | 40.0% | |
| TTTGGGTAACCATGACTACA+GGG | - | chr4.4:17819813-17819832 | MS.gene34961:intron | 40.0% | |
| ! | ATGATGCCCAACACTTTTGA+TGG | + | chr4.4:17820731-17820750 | None:intergenic | 40.0% |
| ! | CAAAAGAGCACACCTATGAT+TGG | - | chr4.4:17820269-17820288 | MS.gene34961:intron | 40.0% |
| ! | CAATCATAGGTGTGCTCTTT+TGG | + | chr4.4:17820271-17820290 | None:intergenic | 40.0% |
| ! | CACTATCTTCCATTTTGCCT+TGG | + | chr4.4:17820695-17820714 | None:intergenic | 40.0% |
| ! | GCAAAATGGAAGATAGTGGT+GGG | - | chr4.4:17820697-17820716 | MS.gene34961:CDS | 40.0% |
| ! | TACCAAATCTTTTGCAGGCT+CGG | + | chr4.4:17819670-17819689 | None:intergenic | 40.0% |
| ! | TTGGCAAGGTTTTGCATAGA+TGG | - | chr4.4:17821347-17821366 | MS.gene34961:CDS | 40.0% |
| !! | AAGCTTCACTTTTAGAGGTG+TGG | + | chr4.4:17821146-17821165 | None:intergenic | 40.0% |
| !! | ATCAAAAGTGTTGGGCATCA+TGG | - | chr4.4:17820730-17820749 | MS.gene34961:CDS | 40.0% |
| !! | CAAGGAAGCTTCACTTTTAG+AGG | + | chr4.4:17821151-17821170 | None:intergenic | 40.0% |
| !! | TTTTGGGTAACCATGACTAC+AGG | - | chr4.4:17819812-17819831 | MS.gene34961:intron | 40.0% |
| !!! | TGCTTTCCACTTTTTTGTGC+AGG | - | chr4.4:17820187-17820206 | MS.gene34961:intron | 40.0% |
| AAGCTTCTCAGCAGCAACAA+TGG | + | chr4.4:17818967-17818986 | None:intergenic | 45.0% | |
| ATGGCTTAGTGTCGCATACA+TGG | - | chr4.4:17820898-17820917 | MS.gene34961:intron | 45.0% | |
| CACAAGTGAAGGTGGATCAA+AGG | - | chr4.4:17821204-17821223 | MS.gene34961:CDS | 45.0% | |
| CACGATAAGATTCACGAGGA+AGG | + | chr4.4:17820303-17820322 | None:intergenic | 45.0% | |
| CGATATCAAGTCATGGAACC+TGG | - | chr4.4:17821237-17821256 | MS.gene34961:CDS | 45.0% | |
| GAGCACACCTATGATTGGAA+TGG | - | chr4.4:17820274-17820293 | MS.gene34961:intron | 45.0% | |
| GCAGCTTCTTCCCATCTTAA+AGG | - | chr4.4:17820774-17820793 | MS.gene34961:intron | 45.0% | |
| GTGCAGAACTCTTGAAGGTA+AGG | - | chr4.4:17820320-17820339 | MS.gene34961:intron | 45.0% | |
| TCACTTTACACTAGCACTCG+TGG | - | chr4.4:17819406-17819425 | MS.gene34961:intron | 45.0% | |
| TCTGCACGATAAGATTCACG+AGG | + | chr4.4:17820307-17820326 | None:intergenic | 45.0% | |
| TGGTGCAATCCAAGGCAAAA+TGG | - | chr4.4:17820683-17820702 | MS.gene34961:CDS | 45.0% | |
| TTGGGTAACCATGACTACAG+GGG | - | chr4.4:17819814-17819833 | MS.gene34961:intron | 45.0% | |
| ! | ACCAAATCTTTTGCAGGCTC+GGG | + | chr4.4:17819669-17819688 | None:intergenic | 45.0% |
| ! | GGCAAAATGGAAGATAGTGG+TGG | - | chr4.4:17820696-17820715 | MS.gene34961:CDS | 45.0% |
| ! | TTCAGCTTTGGTGCAATCCA+AGG | - | chr4.4:17820675-17820694 | MS.gene34961:CDS | 45.0% |
| !! | ACTTTTTGGTCGTCGGAGAT+TGG | - | chr4.4:17819030-17819049 | MS.gene34961:CDS | 45.0% |
| !! | CTTTTTGGTCGTCGGAGATT+GGG | - | chr4.4:17819031-17819050 | MS.gene34961:CDS | 45.0% |
| !! | TTTTTGGTCGTCGGAGATTG+GGG | - | chr4.4:17819032-17819051 | MS.gene34961:CDS | 45.0% |
| CAACATCACCCCTGTAGTCA+TGG | + | chr4.4:17819825-17819844 | None:intergenic | 50.0% | |
| GACACTAAGCCATGTGTCCT+CGG | + | chr4.4:17820891-17820910 | None:intergenic | 50.0% | |
| GTCGGAGATTGGGGAAGAAA+AGG | - | chr4.4:17819041-17819060 | MS.gene34961:CDS | 50.0% | |
| GTGAAGGTGGATCAAAGGCA+TGG | - | chr4.4:17821209-17821228 | MS.gene34961:CDS | 50.0% | |
| TCAATCTTTGGTCGCCCATC+AGG | - | chr4.4:17819073-17819092 | MS.gene34961:CDS | 50.0% | |
| TTGCTGCTGAGAAGCTTCCA+AGG | - | chr4.4:17818970-17818989 | MS.gene34961:CDS | 50.0% | |
| ! | CCAAATCTTTTGCAGGCTCG+GGG | + | chr4.4:17819668-17819687 | None:intergenic | 50.0% |
| CCCCGAGCCTGCAAAAGATT+TGG | - | chr4.4:17819665-17819684 | MS.gene34961:intron | 55.0% | |
| GGCGAGGCGATATCAAGTCA+TGG | - | chr4.4:17821230-17821249 | MS.gene34961:CDS | 55.0% | |
| ! | GGTGGATCAAAGGCATGGCG+AGG | - | chr4.4:17821214-17821233 | MS.gene34961:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17818882 | 17821411 | 17818882 | ID=MS.gene34961 |
| chr4.4 | mRNA | 17818882 | 17821411 | 17818882 | ID=MS.gene34961.t1;Parent=MS.gene34961 |
| chr4.4 | exon | 17821199 | 17821411 | 17821199 | ID=MS.gene34961.t1.exon1;Parent=MS.gene34961.t1 |
| chr4.4 | CDS | 17821199 | 17821411 | 17821199 | ID=cds.MS.gene34961.t1;Parent=MS.gene34961.t1 |
| chr4.4 | exon | 17820599 | 17820755 | 17820599 | ID=MS.gene34961.t1.exon2;Parent=MS.gene34961.t1 |
| chr4.4 | CDS | 17820599 | 17820755 | 17820599 | ID=cds.MS.gene34961.t1;Parent=MS.gene34961.t1 |
| chr4.4 | exon | 17820374 | 17820481 | 17820374 | ID=MS.gene34961.t1.exon3;Parent=MS.gene34961.t1 |
| chr4.4 | CDS | 17820374 | 17820481 | 17820374 | ID=cds.MS.gene34961.t1;Parent=MS.gene34961.t1 |
| chr4.4 | exon | 17819957 | 17820084 | 17819957 | ID=MS.gene34961.t1.exon4;Parent=MS.gene34961.t1 |
| chr4.4 | CDS | 17819957 | 17820084 | 17819957 | ID=cds.MS.gene34961.t1;Parent=MS.gene34961.t1 |
| chr4.4 | exon | 17819498 | 17819626 | 17819498 | ID=MS.gene34961.t1.exon5;Parent=MS.gene34961.t1 |
| chr4.4 | CDS | 17819498 | 17819626 | 17819498 | ID=cds.MS.gene34961.t1;Parent=MS.gene34961.t1 |
| chr4.4 | exon | 17819194 | 17819261 | 17819194 | ID=MS.gene34961.t1.exon6;Parent=MS.gene34961.t1 |
| chr4.4 | CDS | 17819194 | 17819261 | 17819194 | ID=cds.MS.gene34961.t1;Parent=MS.gene34961.t1 |
| chr4.4 | exon | 17818882 | 17819104 | 17818882 | ID=MS.gene34961.t1.exon7;Parent=MS.gene34961.t1 |
| chr4.4 | CDS | 17818882 | 17819104 | 17818882 | ID=cds.MS.gene34961.t1;Parent=MS.gene34961.t1 |
| Gene Sequence |
| Protein sequence |
