AlfalfaGEDB | MS.gene35799

M. sativa cultivar XinJiangDaYe / MS.gene35799

KEGG: K01633
GO: GO:0003674 GO:0003824 GO:0004150 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016829 GO:0016830 GO:0016832 GO:0019752 GO:0034641 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0046483 GO:0051186 GO:0071704 GO:1901360 GO:1901564
PFAM: PF02152.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35799.t1	XP_024632417.1	96.2	132	5	0	1	132	1	132	1.60E-63	251.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35799.t1	Q9FM54	64.0	125	44	1	5	128	4	128	1.3e-37	157.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35799.t1	A0A072VAF7	96.2	132	5	0	1	132	1	132	1.2e-63	251.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene35799	0.818668	1.74E-52	-1.69E-46
MS.gene049378	MS.gene35799	0.809579	1.76E-50	-1.69E-46
MS.gene049382	MS.gene35799	0.811332	7.38E-51	-1.69E-46
MS.gene04984	MS.gene35799	0.840171	1.02E-57	-1.69E-46
MS.gene050227	MS.gene35799	0.80801	3.82E-50	-1.69E-46
MS.gene050228	MS.gene35799	0.804287	2.32E-49	-1.69E-46
MS.gene050623	MS.gene35799	-0.81448	1.51E-51	-1.69E-46
MS.gene050719	MS.gene35799	0.813167	2.94E-51	-1.69E-46
MS.gene050721	MS.gene35799	0.815135	1.08E-51	-1.69E-46
MS.gene050724	MS.gene35799	0.823723	1.19E-53	-1.69E-46
MS.gene050762	MS.gene35799	0.834528	2.84E-56	-1.69E-46
MS.gene050763	MS.gene35799	0.836129	1.12E-56	-1.69E-46
MS.gene050815	MS.gene35799	0.836166	1.10E-56	-1.69E-46
MS.gene050826	MS.gene35799	0.812665	3.78E-51	-1.69E-46
MS.gene050941	MS.gene35799	0.813357	2.67E-51	-1.69E-46
MS.gene051243	MS.gene35799	0.824008	1.02E-53	-1.69E-46
MS.gene051245	MS.gene35799	0.853534	2.24E-61	-1.69E-46
MS.gene051328	MS.gene35799	0.805221	1.48E-49	-1.69E-46
MS.gene051349	MS.gene35799	0.807214	5.64E-50	-1.69E-46
MS.gene051452	MS.gene35799	0.855978	4.39E-62	-1.69E-46
MS.gene051535	MS.gene35799	0.813314	2.72E-51	-1.69E-46
MS.gene051757	MS.gene35799	0.825274	5.12E-54	-1.69E-46
MS.gene052012	MS.gene35799	0.82203	2.95E-53	-1.69E-46
MS.gene052426	MS.gene35799	0.819969	8.78E-53	-1.69E-46
MS.gene052896	MS.gene35799	0.816362	5.75E-52	-1.69E-46
MS.gene053008	MS.gene35799	0.870446	1.45E-66	-1.69E-46
MS.gene054379	MS.gene35799	0.838811	2.30E-57	-1.69E-46
MS.gene054472	MS.gene35799	0.829276	5.63E-55	-1.69E-46
MS.gene054542	MS.gene35799	0.807127	5.88E-50	-1.69E-46
MS.gene05462	MS.gene35799	0.80016	1.64E-48	-1.69E-46
MS.gene054657	MS.gene35799	0.830683	2.56E-55	-1.69E-46
MS.gene054823	MS.gene35799	0.839655	1.39E-57	-1.69E-46
MS.gene054930	MS.gene35799	0.801898	7.24E-49	-1.69E-46
MS.gene05510	MS.gene35799	0.831676	1.46E-55	-1.69E-46
MS.gene05517	MS.gene35799	0.813124	3.00E-51	-1.69E-46
MS.gene055441	MS.gene35799	0.808477	3.04E-50	-1.69E-46
MS.gene055623	MS.gene35799	0.845905	3.03E-59	-1.69E-46
MS.gene055701	MS.gene35799	0.810047	1.40E-50	-1.69E-46
MS.gene056181	MS.gene35799	0.814158	1.78E-51	-1.69E-46
MS.gene056760	MS.gene35799	0.82625	3.01E-54	-1.69E-46
MS.gene056787	MS.gene35799	0.840923	6.49E-58	-1.69E-46
MS.gene057055	MS.gene35799	0.817626	2.99E-52	-1.69E-46
MS.gene057057	MS.gene35799	0.832585	8.69E-56	-1.69E-46
MS.gene057140	MS.gene35799	0.858681	6.97E-63	-1.69E-46
MS.gene05761	MS.gene35799	0.802732	4.88E-49	-1.69E-46
MS.gene057754	MS.gene35799	0.815442	9.22E-52	-1.69E-46
MS.gene058084	MS.gene35799	0.800436	1.44E-48	-1.69E-46
MS.gene058146	MS.gene35799	0.824648	7.20E-54	-1.69E-46
MS.gene058182	MS.gene35799	0.828582	8.30E-55	-1.69E-46
MS.gene058399	MS.gene35799	0.812404	4.31E-51	-1.69E-46
MS.gene058595	MS.gene35799	0.820875	5.44E-53	-1.69E-46
MS.gene058646	MS.gene35799	0.837966	3.80E-57	-1.69E-46
MS.gene058654	MS.gene35799	0.817025	4.08E-52	-1.69E-46
MS.gene058906	MS.gene35799	0.838212	3.29E-57	-1.69E-46
MS.gene059283	MS.gene35799	0.808487	3.02E-50	-1.69E-46
MS.gene059713	MS.gene35799	0.802845	4.62E-49	-1.69E-46
MS.gene059830	MS.gene35799	0.805309	1.42E-49	-1.69E-46
MS.gene060084	MS.gene35799	0.826869	2.14E-54	-1.69E-46
MS.gene06010	MS.gene35799	0.81583	7.56E-52	-1.69E-46
MS.gene060296	MS.gene35799	0.827349	1.64E-54	-1.69E-46
MS.gene060297	MS.gene35799	0.82199	3.01E-53	-1.69E-46
MS.gene060322	MS.gene35799	0.823495	1.34E-53	-1.69E-46
MS.gene060683	MS.gene35799	0.824695	7.02E-54	-1.69E-46
MS.gene060685	MS.gene35799	0.820453	6.81E-53	-1.69E-46
MS.gene060802	MS.gene35799	0.83766	4.56E-57	-1.69E-46
MS.gene060803	MS.gene35799	0.830152	3.45E-55	-1.69E-46
MS.gene060869	MS.gene35799	0.814796	1.28E-51	-1.69E-46
MS.gene060870	MS.gene35799	0.8293	5.56E-55	-1.69E-46
MS.gene060942	MS.gene35799	0.800542	1.37E-48	-1.69E-46
MS.gene060998	MS.gene35799	0.822914	1.84E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35799.t1	MTR_2g088720	96.212	132	5	1	132	1	132	2.65e-89	255
MS.gene35799.t1	MTR_2g088720	96.212	132	5	1	132	12	143	3.32e-89	255
MS.gene35799.t1	MTR_7g106600	83.077	130	22	4	133	1	130	1.43e-76	223
MS.gene35799.t1	MTR_7g106580	78.947	133	28	1	133	1	133	1.97e-73	215

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35799.t1	AT5G62980	63.492	126	45	1	5	129	4	129	5.87e-52	160
MS.gene35799.t1	AT5G62980	63.492	126	45	1	5	129	4	129	5.87e-52	160
MS.gene35799.t1	AT3G11750	62.810	121	44	1	10	129	21	141	9.45e-51	158
MS.gene35799.t1	AT3G21730	52.500	120	56	1	11	129	40	159	5.10e-41	134
MS.gene35799.t1	AT3G21730	46.032	63	33	1	68	129	13	75	1.50e-13	62.0

Find 0 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATAGCTAAGAAAGTTATTGA+AGG	+	15127:11017-11036	MS.gene35799:CDS	25.0%
	TAAAATTGCAATCGCTACTT+TGG	+	15127:11073-11092	MS.gene35799:CDS	30.0%
!	AAGTAGCGATTGCAATTTTA+TGG	-	15127:11073-11092	None:intergenic	30.0%
!	AGTAGCGATTGCAATTTTAT+GGG	-	15127:11072-11091	None:intergenic	30.0%
!	TTGACTTTCTATGGTTTTCA+CGG	+	15127:10867-10886	MS.gene35799:CDS	30.0%
!!	AAGGTGTTGATGCATTAATA+GGG	+	15127:10820-10839	MS.gene35799:CDS	30.0%
	GGAGACAAACTTATTCTAAG+GGG	+	15127:10843-10862	MS.gene35799:CDS	35.0%
	GGGAGACAAACTTATTCTAA+GGG	+	15127:10842-10861	MS.gene35799:CDS	35.0%
!	AAGTTATCAGATTTTCCAGC+TGG	-	15127:10963-10982	None:intergenic	35.0%
!!	AGGTGTTGATGCATTAATAG+GGG	+	15127:10821-10840	MS.gene35799:CDS	35.0%
!!	GAAGGTGTTGATGCATTAAT+AGG	+	15127:10819-10838	MS.gene35799:CDS	35.0%
	GGGGAGACAAACTTATTCTA+AGG	+	15127:10841-10860	MS.gene35799:CDS	40.0%
	TCAACGCCTAAGTAATCAAC+CGG	-	15127:11164-11183	None:intergenic	40.0%
!	CTAAGGGGATTGACTTTCTA+TGG	+	15127:10858-10877	MS.gene35799:CDS	40.0%
!!	GGTGTTGATGCATTAATAGG+GGG	+	15127:10822-10841	MS.gene35799:CDS	40.0%
	ACAGAAGTTTGTGGTAGACG+TGG	+	15127:10917-10936	MS.gene35799:CDS	45.0%
	GATATCTGCTGTTCGTGTGA+AGG	+	15127:11109-11128	MS.gene35799:CDS	45.0%
!	TGGTTTTCACGGAGCAATAG+CGG	+	15127:10878-10897	MS.gene35799:CDS	45.0%
!!	TCAAAACCTTCTGGAGTCAG+TGG	+	15127:11046-11065	MS.gene35799:CDS	45.0%
	AAAGCCTCATGTGGCGATTC+AGG	+	15127:11136-11155	MS.gene35799:CDS	50.0%
	AAGCCTCATGTGGCGATTCA+GGG	+	15127:11137-11156	MS.gene35799:CDS	50.0%
	AGGACCAGCTCAAAACCTTC+TGG	+	15127:11037-11056	MS.gene35799:CDS	50.0%
	CAGGGTCCGGTTGATTACTT+AGG	+	15127:11155-11174	MS.gene35799:CDS	50.0%
	GAAGGTTGGAAAGCCTCATG+TGG	+	15127:11127-11146	MS.gene35799:CDS	50.0%
	GACGCTAGGACAGAAGTTTG+TGG	+	15127:10908-10927	MS.gene35799:CDS	50.0%
	TCTGCTGTTCGTGTGAAGGT+TGG	+	15127:11113-11132	MS.gene35799:CDS	50.0%
	TGGTTGGATCTCAAACCAGC+TGG	+	15127:10945-10964	MS.gene35799:CDS	50.0%
	TTGTGGTAGACGTGGATGCT+TGG	+	15127:10925-10944	MS.gene35799:CDS	50.0%
!	ACGGAGCAATAGCGGAAGAA+AGG	+	15127:10886-10905	MS.gene35799:CDS	50.0%
!	ATAGCGGAAGAAAGGACGCT+AGG	+	15127:10894-10913	MS.gene35799:CDS	50.0%
!!	GTTGAGATTCTGAGACGCAG+AGG	+	15127:11179-11198	MS.gene35799:CDS	50.0%
!!!	GACTCCAGAAGGTTTTGAGC+TGG	-	15127:11044-11063	None:intergenic	50.0%
	GGTAGACGTGGATGCTTGGT+TGG	+	15127:10929-10948	MS.gene35799:CDS	55.0%
	TCATGTGGCGATTCAGGGTC+CGG	+	15127:11142-11161	MS.gene35799:CDS	55.0%
!!	TATGGGCCACTGACTCCAGA+AGG	-	15127:11055-11074	None:intergenic	55.0%
	GGACCCTGAATCGCCACATG+AGG	-	15127:11143-11162	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
15127	gene	10816	11217	10816	ID=MS.gene35799
15127	mRNA	10816	11217	10816	ID=MS.gene35799.t1;Parent=MS.gene35799
15127	exon	10816	11217	10816	ID=MS.gene35799.t1.exon1;Parent=MS.gene35799.t1
15127	CDS	10816	11217	10816	ID=cds.MS.gene35799.t1;Parent=MS.gene35799.t1

Gene Sequence

>MS.gene35799

ATGGAAGGTGTTGATGCATTAATAGGGGGAGACAAACTTATTCTAAGGGGATTGACTTTCTATGGTTTTCACGGAGCAATAGCGGAAGAAAGGACGCTAGGACAGAAGTTTGTGGTAGACGTGGATGCTTGGTTGGATCTCAAACCAGCTGGAAAATCTGATAACTTGTCTGATTCTTTTAGTTACGCTGAAATATATCTTATAGCTAAGAAAGTTATTGAAGGACCAGCTCAAAACCTTCTGGAGTCAGTGGCCCATAAAATTGCAATCGCTACTTTGGAAGTTCAGAAAAAGATATCTGCTGTTCGTGTGAAGGTTGGAAAGCCTCATGTGGCGATTCAGGGTCCGGTTGATTACTTAGGCGTTGAGATTCTGAGACGCAGAGGCGATTTGACAGACTAG

Protein sequence

>MS.gene35799.t1

MEGVDALIGGDKLILRGLTFYGFHGAIAEERTLGQKFVVDVDAWLDLKPAGKSDNLSDSFSYAEIYLIAKKVIEGPAQNLLESVAHKIAIATLEVQKKISAVRVKVGKPHVAIQGPVDYLGVEILRRRGDLTD