Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36453.t1 | XP_013457315.1 | 95.2 | 950 | 41 | 2 | 1 | 949 | 1 | 946 | 0.00E+00 | 1790.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36453.t1 | Q9C5Q8 | 47.6 | 978 | 429 | 17 | 8 | 947 | 1 | 933 | 3.8e-227 | 789.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36453.t1 | A0A072UPT2 | 95.2 | 950 | 41 | 2 | 1 | 949 | 1 | 946 | 0.0e+00 | 1790.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene36453 | 0.858584 | 7.45E-63 | -1.69E-46 |
| MS.gene049254 | MS.gene36453 | 0.81923 | 1.30E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene36453 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene36453 | 0.82175 | 3.42E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene36453 | 0.826766 | 2.27E-54 | -1.69E-46 |
| MS.gene049452 | MS.gene36453 | 0.848029 | 7.95E-60 | -1.69E-46 |
| MS.gene049850 | MS.gene36453 | 0.802792 | 4.74E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene36453 | 0.822088 | 2.86E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene36453 | 0.81327 | 2.79E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene36453 | 0.802256 | 6.11E-49 | -1.69E-46 |
| MS.gene050605 | MS.gene36453 | 0.848717 | 5.13E-60 | -1.69E-46 |
| MS.gene050654 | MS.gene36453 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene36453 | 0.850612 | 1.52E-60 | -1.69E-46 |
| MS.gene050962 | MS.gene36453 | 0.842217 | 2.96E-58 | -1.69E-46 |
| MS.gene051198 | MS.gene36453 | 0.834891 | 2.31E-56 | -1.69E-46 |
| MS.gene051363 | MS.gene36453 | 0.808898 | 2.47E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene36453 | 0.855803 | 4.94E-62 | -1.69E-46 |
| MS.gene051597 | MS.gene36453 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene36453 | 0.816554 | 5.21E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene36453 | 0.820255 | 7.55E-53 | -1.69E-46 |
| MS.gene052012 | MS.gene36453 | 0.840855 | 6.76E-58 | -1.69E-46 |
| MS.gene052108 | MS.gene36453 | 0.812311 | 4.52E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene36453 | 0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene36453 | 0.830189 | 3.38E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene36453 | 0.81966 | 1.03E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene36453 | 0.827742 | 1.32E-54 | -1.69E-46 |
| MS.gene052669 | MS.gene36453 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene36453 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene36453 | 0.811079 | 8.38E-51 | -1.69E-46 |
| MS.gene052775 | MS.gene36453 | 0.806401 | 8.37E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene36453 | 0.8271 | 1.89E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene36453 | 0.830511 | 2.82E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene36453 | 0.820381 | 7.07E-53 | -1.69E-46 |
| MS.gene053080 | MS.gene36453 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene36453 | 0.808952 | 2.40E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene36453 | 0.853617 | 2.12E-61 | -1.69E-46 |
| MS.gene053296 | MS.gene36453 | 0.820357 | 7.16E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene36453 | 0.833794 | 4.34E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene36453 | 0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene36453 | 0.826408 | 2.76E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene36453 | 0.817593 | 3.04E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene36453 | 0.847032 | 1.49E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene36453 | 0.802951 | 4.40E-49 | -1.69E-46 |
| MS.gene054994 | MS.gene36453 | 0.835843 | 1.33E-56 | -1.69E-46 |
| MS.gene05510 | MS.gene36453 | 0.819062 | 1.41E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene36453 | 0.807906 | 4.02E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene36453 | 0.815676 | 8.18E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene36453 | 0.846555 | 2.02E-59 | -1.69E-46 |
| MS.gene055227 | MS.gene36453 | 0.802137 | 6.47E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene36453 | 0.820535 | 6.52E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene36453 | 0.80342 | 3.52E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene36453 | 0.831405 | 1.70E-55 | -1.69E-46 |
| MS.gene056045 | MS.gene36453 | 0.822755 | 2.00E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene36453 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene36453 | 0.809986 | 1.44E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene36453 | 0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene36453 | 0.841104 | 5.82E-58 | -1.69E-46 |
| MS.gene05659 | MS.gene36453 | 0.809045 | 2.30E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene36453 | 0.815493 | 8.99E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene36453 | 0.815241 | 1.02E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene36453 | 0.859915 | 2.97E-63 | -1.69E-46 |
| MS.gene057444 | MS.gene36453 | 0.802501 | 5.44E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene36453 | 0.811853 | 5.69E-51 | -1.69E-46 |
| MS.gene057855 | MS.gene36453 | 0.803379 | 3.59E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene36453 | 0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene36453 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene36453 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene36453 | 0.818734 | 1.68E-52 | -1.69E-46 |
| MS.gene058548 | MS.gene36453 | 0.835651 | 1.48E-56 | -1.69E-46 |
| MS.gene058595 | MS.gene36453 | 0.830524 | 2.80E-55 | -1.69E-46 |
| MS.gene058783 | MS.gene36453 | 0.806216 | 9.16E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene36453 | 0.854248 | 1.40E-61 | -1.69E-46 |
| MS.gene059161 | MS.gene36453 | 0.807219 | 5.62E-50 | -1.69E-46 |
| MS.gene05979 | MS.gene36453 | 0.822743 | 2.01E-53 | -1.69E-46 |
| MS.gene060011 | MS.gene36453 | 0.825437 | 4.69E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene36453 | 0.823687 | 1.21E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene36453 | 0.810464 | 1.14E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene36453 | 0.811589 | 6.49E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene36453 | 0.834158 | 3.52E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene36453 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene36453 | 0.801039 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36453.t1 | MTR_4g094545 | 95.158 | 950 | 41 | 2 | 1 | 949 | 1 | 946 | 0.0 | 1857 |
| MS.gene36453.t1 | MTR_4g094545 | 95.102 | 735 | 31 | 2 | 216 | 949 | 1 | 731 | 0.0 | 1441 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36453.t1 | AT4G20910 | 48.632 | 950 | 455 | 13 | 8 | 944 | 1 | 930 | 0.0 | 835 |
| MS.gene36453.t1 | AT4G20910 | 48.632 | 950 | 455 | 13 | 8 | 944 | 1 | 930 | 0.0 | 835 |
| MS.gene36453.t1 | AT4G20920 | 41.858 | 786 | 386 | 17 | 8 | 763 | 1 | 745 | 1.31e-178 | 536 |
| MS.gene36453.t1 | AT4G20920 | 41.858 | 786 | 386 | 17 | 8 | 763 | 1 | 745 | 1.31e-178 | 536 |
| MS.gene36453.t1 | AT4G20920 | 41.858 | 786 | 386 | 17 | 8 | 763 | 1 | 745 | 1.31e-178 | 536 |
| MS.gene36453.t1 | AT4G20920 | 41.221 | 786 | 375 | 18 | 8 | 763 | 1 | 729 | 5.37e-171 | 516 |
| MS.gene36453.t1 | AT4G20920 | 41.221 | 786 | 375 | 18 | 8 | 763 | 1 | 729 | 5.37e-171 | 516 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATTGCAGCTTGATTT+TGG | 0.099534 | 4.1:+18748004 | MS.gene36453:intron |
| ACTACATTGTATTCAAAATT+TGG | 0.173974 | 4.1:-18750396 | None:intergenic |
| CGTCCAATTCTTCTTGTTCT+TGG | 0.180888 | 4.1:-18750443 | None:intergenic |
| GAAGATCAAGCTTGTCTCTT+TGG | 0.252238 | 4.1:+18750324 | MS.gene36453:CDS |
| GTGAAATAAAGTTGCTTTCT+CGG | 0.254391 | 4.1:+18747036 | MS.gene36453:CDS |
| CTCTGGAGGTTCTGCAACTT+TGG | 0.257411 | 4.1:-18747817 | None:intergenic |
| AAGATCAAGCTTGTCTCTTT+GGG | 0.262347 | 4.1:+18750325 | MS.gene36453:CDS |
| GTAGCAGCCCTTACTATATA+TGG | 0.276604 | 4.1:-18745527 | None:intergenic |
| TTTCTATACAGGATGCTTCT+AGG | 0.281845 | 4.1:+18746708 | MS.gene36453:intron |
| TGTCCAAAGCAATCAGATTC+AGG | 0.283086 | 4.1:+18747002 | MS.gene36453:CDS |
| TTACAAGACATGTTAGTAAA+TGG | 0.283885 | 4.1:+18747338 | MS.gene36453:CDS |
| TAACTGTTCGGTTATATTAC+AGG | 0.285137 | 4.1:+18746114 | MS.gene36453:CDS |
| ATAGCCATTATAATGTAATA+TGG | 0.293113 | 4.1:+18750697 | MS.gene36453:CDS |
| CAGACAGCAATGACAGAAAT+AGG | 0.302121 | 4.1:-18745434 | None:intergenic |
| TCTATAATATCTTGTGGATA+TGG | 0.304654 | 4.1:-18745608 | None:intergenic |
| ATTCCCATATTACATTATAA+TGG | 0.306928 | 4.1:-18750701 | None:intergenic |
| GCCAACGGGGCCTCTGTAAA+TGG | 0.312707 | 4.1:+18746978 | MS.gene36453:CDS |
| GATTTACCACAAGAGTTAAC+TGG | 0.321328 | 4.1:+18746796 | MS.gene36453:CDS |
| TTACATCTGAACAACATATC+TGG | 0.321631 | 4.1:+18745570 | MS.gene36453:CDS |
| TATTAGTTATTCAGTATCTT+TGG | 0.322059 | 4.1:+18747427 | MS.gene36453:CDS |
| AGATATTATAGAGTCGTTAA+TGG | 0.324864 | 4.1:+18745619 | MS.gene36453:CDS |
| ATCCGCTCAGTGGTCACATT+CGG | 0.329096 | 4.1:+18745372 | MS.gene36453:CDS |
| GTAGAAACAATAAGAATCTT+TGG | 0.332039 | 4.1:-18750372 | None:intergenic |
| TTTGAGAGGATGACTTATAA+TGG | 0.337624 | 4.1:-18746889 | None:intergenic |
| GCCTGCTCCATTCTTTCCTC+TGG | 0.340683 | 4.1:-18747834 | None:intergenic |
| GTTCCCCTGAGGATTGTTAT+AGG | 0.348614 | 4.1:+18747081 | MS.gene36453:CDS |
| GTATTATAGCCTTCGGTGTA+AGG | 0.357215 | 4.1:-18743147 | None:intergenic |
| ACTGGAGGGGTTCCCTTCCT+AGG | 0.364152 | 4.1:+18746814 | MS.gene36453:CDS |
| GTTGAGGCCATACGCATTCC+TGG | 0.367253 | 4.1:+18745671 | MS.gene36453:CDS |
| ATTCTTCTTGTTCTTGGGTA+GGG | 0.367654 | 4.1:-18750437 | None:intergenic |
| TGGTCCTTCCATATATAGTA+AGG | 0.370607 | 4.1:+18745519 | MS.gene36453:CDS |
| GTTCTTGTCACACCAGCATC+TGG | 0.379015 | 4.1:-18749359 | None:intergenic |
| AGAAGATAAGGACGGCATTA+TGG | 0.379210 | 4.1:-18747636 | None:intergenic |
| AGGTTGCATGGGTTTGATAT+TGG | 0.381505 | 4.1:+18749434 | MS.gene36453:CDS |
| TACCCAAGAACAAGAAGAAT+TGG | 0.381585 | 4.1:+18750440 | MS.gene36453:CDS |
| ATCCCTGAATCTGATTGCTT+TGG | 0.384080 | 4.1:-18747005 | None:intergenic |
| GTCCAATTCTTCTTGTTCTT+GGG | 0.384367 | 4.1:-18750442 | None:intergenic |
| TGATATTGGTACTTGTTTAG+AGG | 0.385962 | 4.1:+18749448 | MS.gene36453:CDS |
| AGCTTGTCTCTTTGGGGATG+TGG | 0.389014 | 4.1:+18750332 | MS.gene36453:CDS |
| AGAATCACATGCTACTACTT+TGG | 0.389905 | 4.1:+18747914 | MS.gene36453:CDS |
| AATGTGGAGTTTAGTGGGGT+TGG | 0.390171 | 4.1:+18750576 | MS.gene36453:CDS |
| AGCTGTGAGTAGTGCCTCTC+TGG | 0.390358 | 4.1:-18746760 | None:intergenic |
| TGTGGCTCCAATAGGAATAT+AGG | 0.393034 | 4.1:+18745876 | MS.gene36453:intron |
| GCTATAATACACCAAAAGTT+TGG | 0.393808 | 4.1:+18743160 | MS.gene36453:CDS |
| GATATCATTGCAAATGAACT+TGG | 0.395132 | 4.1:+18745755 | MS.gene36453:CDS |
| CTCTGGTCCACTCAAATTTG+TGG | 0.398261 | 4.1:-18750506 | None:intergenic |
| GAAACTTGCATGACTGTAAG+AGG | 0.398637 | 4.1:-18750473 | None:intergenic |
| GTGGAGTTTAGTGGGGTTGG+TGG | 0.404034 | 4.1:+18750579 | MS.gene36453:CDS |
| TCCGCTCAGTGGTCACATTC+GGG | 0.404773 | 4.1:+18745373 | MS.gene36453:CDS |
| TGCTTCTAGGGAAGACTCCC+GGG | 0.405633 | 4.1:+18746721 | MS.gene36453:CDS |
| TAGAGATCCTTCAAAATGAA+TGG | 0.409255 | 4.1:-18745988 | None:intergenic |
| TGGTGTTGATATTTCACAAA+AGG | 0.412817 | 4.1:+18748090 | MS.gene36453:CDS |
| TTCTTCTTGTTCTTGGGTAG+GGG | 0.415292 | 4.1:-18750436 | None:intergenic |
| AATTCTTCTTGTTCTTGGGT+AGG | 0.417688 | 4.1:-18750438 | None:intergenic |
| TTATTCAGTATCTTTGGTTG+TGG | 0.422053 | 4.1:+18747433 | MS.gene36453:CDS |
| ACTCTTGTGGTAAATCTTGA+AGG | 0.423724 | 4.1:-18746789 | None:intergenic |
| TGATTCACAAGAATGCATTC+AGG | 0.428117 | 4.1:+18745649 | MS.gene36453:CDS |
| AATGAGTTTGAGTTTGAGAT+TGG | 0.429249 | 4.1:+18747491 | MS.gene36453:CDS |
| AATTATAATGTGGAGTTTAG+TGG | 0.438708 | 4.1:+18750570 | MS.gene36453:CDS |
| TTCAGTATCTTTGGTTGTGG+AGG | 0.439928 | 4.1:+18747436 | MS.gene36453:CDS |
| ATTATAATGTGGAGTTTAGT+GGG | 0.440196 | 4.1:+18750571 | MS.gene36453:CDS |
| TGCTTCCTATAACAATCCTC+AGG | 0.441318 | 4.1:-18747086 | None:intergenic |
| CATGGACAGACACCAGAGTC+TGG | 0.442267 | 4.1:-18747386 | None:intergenic |
| AATGCAGGTGATTGAACATA+TGG | 0.443555 | 4.1:+18750299 | MS.gene36453:intron |
| GGGCCAATGTTCTGATTTCA+AGG | 0.444876 | 4.1:+18745789 | MS.gene36453:CDS |
| TGCTCCATTCTTTCCTCTGG+AGG | 0.447746 | 4.1:-18747831 | None:intergenic |
| GCAAGGGCAAGATACTTGTC+TGG | 0.448127 | 4.1:+18746014 | MS.gene36453:CDS |
| ACTTCGCTGGAGAAAATTGC+TGG | 0.452004 | 4.1:+18748070 | MS.gene36453:CDS |
| TACACTGCATTGCATAAAGA+TGG | 0.458498 | 4.1:-18747283 | None:intergenic |
| CAACCAGTGGGCATCTGACT+TGG | 0.460111 | 4.1:+18750536 | MS.gene36453:CDS |
| CATACGCATTCCTGGTTCAA+TGG | 0.462240 | 4.1:+18745679 | MS.gene36453:CDS |
| GTTCATTTGCAATGATATCA+AGG | 0.464150 | 4.1:-18745751 | None:intergenic |
| CAATTACAATCTCTCTGAAA+AGG | 0.464973 | 4.1:-18747241 | None:intergenic |
| GAGGTTCAGACAGGCGATGC+TGG | 0.468726 | 4.1:-18746860 | None:intergenic |
| TCTTCTTGTTCTTGGGTAGG+GGG | 0.468837 | 4.1:-18750435 | None:intergenic |
| TCGTGTTGAAATAAGCATAC+TGG | 0.468944 | 4.1:-18747568 | None:intergenic |
| CCACTGGTTGAACTGTTCTC+TGG | 0.472971 | 4.1:-18750523 | None:intergenic |
| ATGTGATTGAATGTGCCAAC+GGG | 0.477723 | 4.1:+18746964 | MS.gene36453:CDS |
| ACAAGAATGCATTCAGGTTG+AGG | 0.478281 | 4.1:+18745655 | MS.gene36453:CDS |
| GTCACATTCGGGCTAGTTTG+AGG | 0.478959 | 4.1:+18745384 | MS.gene36453:CDS |
| TTCTATACAGGATGCTTCTA+GGG | 0.481021 | 4.1:+18746709 | MS.gene36453:intron |
| GACTGCTGATCTTACTCCTC+AGG | 0.481482 | 4.1:+18744373 | MS.gene36453:CDS |
| AACGGATTTGACTCCACCTC+AGG | 0.481788 | 4.1:-18745494 | None:intergenic |
| TAGCCATTATAATGTAATAT+GGG | 0.483058 | 4.1:+18750698 | MS.gene36453:CDS |
| CTTGTCACAACTGTAAGTTC+TGG | 0.483370 | 4.1:-18743295 | None:intergenic |
| GTCTCATAGAGCCGTTCAAA+AGG | 0.485529 | 4.1:-18747182 | None:intergenic |
| ATGCTTCTAGGGAAGACTCC+CGG | 0.486091 | 4.1:+18746720 | MS.gene36453:CDS |
| AATGAACTTGGGTTAGAAGA+TGG | 0.487425 | 4.1:+18745767 | MS.gene36453:CDS |
| GTCTCTCAAAATGAATGTCC+AGG | 0.487786 | 4.1:+18743220 | MS.gene36453:CDS |
| TATCTATATCAGTATGCGTC+TGG | 0.487812 | 4.1:-18750677 | None:intergenic |
| GAACGGCTCTATGAGACTGC+AGG | 0.489975 | 4.1:+18747188 | MS.gene36453:CDS |
| TCCACTCGTTGCTTCGAAAG+TGG | 0.491008 | 4.1:-18747870 | None:intergenic |
| TCAGTATCTTTGGTTGTGGA+GGG | 0.493622 | 4.1:+18747437 | MS.gene36453:CDS |
| CATGACTTTGATGATTCAGT+TGG | 0.494187 | 4.1:-18746915 | None:intergenic |
| CCTCATTGAAACTTCTATCA+TGG | 0.495677 | 4.1:+18747129 | MS.gene36453:CDS |
| GGTGTTGATATTTCACAAAA+GGG | 0.495830 | 4.1:+18748091 | MS.gene36453:CDS |
| TATAGAGTCGTTAATGGAAG+AGG | 0.498379 | 4.1:+18745625 | MS.gene36453:CDS |
| ATAGCCTTCGGTGTAAGGGC+TGG | 0.499378 | 4.1:-18743142 | None:intergenic |
| TGCTCGACAATCATATCTAC+TGG | 0.502229 | 4.1:+18745932 | MS.gene36453:CDS |
| ATGAGTTTGAGTTTGAGATT+GGG | 0.503837 | 4.1:+18747492 | MS.gene36453:CDS |
| TTTGAGTTTGAGATTGGGGT+TGG | 0.504481 | 4.1:+18747497 | MS.gene36453:CDS |
| GTTTGCAGCTTAAAGATTGA+AGG | 0.507154 | 4.1:+18747362 | MS.gene36453:CDS |
| ATGAACTTGGGTTAGAAGAT+GGG | 0.510409 | 4.1:+18745768 | MS.gene36453:CDS |
| ATGTGGATCTGGAAGCTTGT+TGG | 0.511656 | 4.1:+18748027 | MS.gene36453:CDS |
| GGATAATTTGTAAATTCCCC+CGG | 0.513841 | 4.1:-18746739 | None:intergenic |
| TCTACGAGGATGTAACTGTT+CGG | 0.516452 | 4.1:+18746102 | MS.gene36453:CDS |
| ATAAAGATGGCCATTCTGAA+TGG | 0.516494 | 4.1:-18747270 | None:intergenic |
| AAATGCTTGCTATGTGGTAG+AGG | 0.517443 | 4.1:+18743186 | MS.gene36453:CDS |
| TTGCTGTGTTCAAAAGAGAA+TGG | 0.518521 | 4.1:+18750637 | MS.gene36453:CDS |
| GGGTCTTACACGGGCTGCAA+AGG | 0.518931 | 4.1:+18748111 | MS.gene36453:CDS |
| TCCAGAGGAAAGAATGGAGC+AGG | 0.519203 | 4.1:+18747833 | MS.gene36453:CDS |
| GCTAAATTACACAACTTCGC+TGG | 0.527947 | 4.1:+18748057 | MS.gene36453:CDS |
| TGAGTTTGAGTTTGAGATTG+GGG | 0.529855 | 4.1:+18747493 | MS.gene36453:CDS |
| TGTAATGAATTTGCACACAT+TGG | 0.532539 | 4.1:-18747320 | None:intergenic |
| AATATCAAACCCATGCAACC+TGG | 0.534074 | 4.1:-18749432 | None:intergenic |
| CTGGAGGGGTTCCCTTCCTA+GGG | 0.534132 | 4.1:+18746815 | MS.gene36453:CDS |
| ATATCATTGCAAATGAACTT+GGG | 0.536376 | 4.1:+18745756 | MS.gene36453:CDS |
| TTAGATGCAAATCCAGATGC+TGG | 0.537038 | 4.1:+18749347 | MS.gene36453:CDS |
| AGAGCAATCTGCTGCGGAGA+TGG | 0.537240 | 4.1:+18743342 | MS.gene36453:CDS |
| ATTATAATGTAATATGGGAA+TGG | 0.539053 | 4.1:+18750703 | MS.gene36453:CDS |
| TACAAAGAATATCCCTAGGA+AGG | 0.539793 | 4.1:-18746827 | None:intergenic |
| TTGAAGGATCTCTAAATGCA+AGG | 0.539876 | 4.1:+18745997 | MS.gene36453:CDS |
| AAGTAACTCACTAGAAGATA+AGG | 0.540577 | 4.1:-18747648 | None:intergenic |
| TATTTCATACTCCACATAGC+AGG | 0.542018 | 4.1:-18747787 | None:intergenic |
| TGCTGTGATTTCATTCATTG+AGG | 0.544473 | 4.1:+18747520 | MS.gene36453:CDS |
| AACGACTCTATAATATCTTG+TGG | 0.544982 | 4.1:-18745614 | None:intergenic |
| GTCCAAAGCAATCAGATTCA+GGG | 0.545820 | 4.1:+18747003 | MS.gene36453:CDS |
| TCGAGCAGCAAAGAACAGTC+TGG | 0.546354 | 4.1:-18745916 | None:intergenic |
| ACTCGTTGCTTCGAAAGTGG+AGG | 0.548386 | 4.1:-18747867 | None:intergenic |
| AAGATTGAAGGTCCAGACTC+TGG | 0.551436 | 4.1:+18747374 | MS.gene36453:CDS |
| ATAGAGTCGTTAATGGAAGA+GGG | 0.553839 | 4.1:+18745626 | MS.gene36453:CDS |
| TGAAGGATCTCTAAATGCAA+GGG | 0.558644 | 4.1:+18745998 | MS.gene36453:CDS |
| TATTATAGCCTTCGGTGTAA+GGG | 0.559881 | 4.1:-18743146 | None:intergenic |
| GGTCCTTCCATATATAGTAA+GGG | 0.560300 | 4.1:+18745520 | MS.gene36453:CDS |
| CAGCCAAGTCAGATGCCCAC+TGG | 0.560908 | 4.1:-18750539 | None:intergenic |
| TCCATTTACAGAGGCCCCGT+TGG | 0.563920 | 4.1:-18746979 | None:intergenic |
| ACCACAAGAGTTAACTGGAG+GGG | 0.564091 | 4.1:+18746801 | MS.gene36453:CDS |
| GCAATCTGTGAAGCAAAACC+TGG | 0.572230 | 4.1:-18750618 | None:intergenic |
| CATTGAACCAGGAATGCGTA+TGG | 0.572396 | 4.1:-18745678 | None:intergenic |
| ACCCCTCCAGTTAACTCTTG+TGG | 0.573297 | 4.1:-18746802 | None:intergenic |
| TGTGGTAGAGGAAGTGAAAG+AGG | 0.575307 | 4.1:+18743198 | MS.gene36453:CDS |
| TTGTCTGGGCAAGATATAGT+TGG | 0.579218 | 4.1:+18746029 | MS.gene36453:CDS |
| GTTGTGATGCAGATGTCTGT+TGG | 0.579624 | 4.1:+18747545 | MS.gene36453:CDS |
| TTTCACAAAAGGGTCTTACA+CGG | 0.579841 | 4.1:+18748101 | MS.gene36453:CDS |
| AGAACCTCCAGAGGAAAGAA+TGG | 0.579935 | 4.1:+18747827 | MS.gene36453:CDS |
| TCTGGTGTCTGTCCATGCAA+TGG | 0.586141 | 4.1:+18747392 | MS.gene36453:CDS |
| TGGAAAAGAGAGGTTCAGAC+AGG | 0.589880 | 4.1:-18746869 | None:intergenic |
| AAGAACAAGAAGAATTGGAC+GGG | 0.591882 | 4.1:+18750445 | MS.gene36453:CDS |
| CTCGTTGCTTCGAAAGTGGA+GGG | 0.592685 | 4.1:-18747866 | None:intergenic |
| TGTGATTTCATTCATTGAGG+AGG | 0.593480 | 4.1:+18747523 | MS.gene36453:CDS |
| ATACCTTGAAATCAGAACAT+TGG | 0.594025 | 4.1:-18745792 | None:intergenic |
| GACAATCATATCTACTGGAT+CGG | 0.594881 | 4.1:+18745937 | MS.gene36453:CDS |
| GTCTGAGGAATGCTTAACCC+TGG | 0.596255 | 4.1:-18743238 | None:intergenic |
| TTATAATGTGGAGTTTAGTG+GGG | 0.596456 | 4.1:+18750572 | MS.gene36453:CDS |
| CAAGGTAAAGATCCATTGCA+TGG | 0.596851 | 4.1:-18747404 | None:intergenic |
| AAAGTTGCTTTCTCGGTGTG+CGG | 0.598256 | 4.1:+18747043 | MS.gene36453:CDS |
| TAAAGAGATGGCCTCGTCTG+AGG | 0.598998 | 4.1:-18743253 | None:intergenic |
| TGAACTTGGGTTAGAAGATG+GGG | 0.600500 | 4.1:+18745769 | MS.gene36453:CDS |
| ATTGGTCAATCCATTCAGAA+TGG | 0.601077 | 4.1:+18747260 | MS.gene36453:CDS |
| CTGGAAGCTGCAGTGTGCAA+CGG | 0.601473 | 4.1:-18743276 | None:intergenic |
| GATGCAATCTTAGCATGCAT+CGG | 0.605209 | 4.1:+18746053 | MS.gene36453:CDS |
| AAGTCAGTTATTCTTTACGA+AGG | 0.605710 | 4.1:+18749389 | MS.gene36453:CDS |
| ATAATGACCACAAATTTGAG+TGG | 0.608561 | 4.1:+18750499 | MS.gene36453:CDS |
| CAAGGGCAAGATACTTGTCT+GGG | 0.609993 | 4.1:+18746015 | MS.gene36453:CDS |
| TGCGGAGATGGCTATAGAGA+AGG | 0.612624 | 4.1:+18743354 | MS.gene36453:CDS |
| ACAAAGAATATCCCTAGGAA+GGG | 0.615809 | 4.1:-18746826 | None:intergenic |
| CAAGAACAAGAAGAATTGGA+CGG | 0.620185 | 4.1:+18750444 | MS.gene36453:CDS |
| TTCACAAAAGGGTCTTACAC+GGG | 0.620229 | 4.1:+18748102 | MS.gene36453:CDS |
| AAACTTTCTTGTGCATCCTG+AGG | 0.621220 | 4.1:-18744389 | None:intergenic |
| TCCACTTTCGAAGCAACGAG+TGG | 0.622786 | 4.1:+18747869 | MS.gene36453:CDS |
| CAGAACTTACAGTTGTGACA+AGG | 0.625508 | 4.1:+18743296 | MS.gene36453:CDS |
| GGATGCAGAGCAATCTGCTG+CGG | 0.627574 | 4.1:+18743336 | MS.gene36453:CDS |
| AAAACCAGCCCTTACACCGA+AGG | 0.628957 | 4.1:+18743138 | MS.gene36453:CDS |
| GCTTCTAGGGAAGACTCCCG+GGG | 0.629224 | 4.1:+18746722 | MS.gene36453:CDS |
| GGGCATCTGACTTGGCTGCA+CGG | 0.629721 | 4.1:+18750544 | MS.gene36453:CDS |
| TCTCTCAAAATGAATGTCCA+GGG | 0.631429 | 4.1:+18743221 | MS.gene36453:CDS |
| GCTTCCTATAACAATCCTCA+GGG | 0.632807 | 4.1:-18747085 | None:intergenic |
| AGGACGAAGAGCGATCATTG+TGG | 0.633070 | 4.1:+18745404 | MS.gene36453:CDS |
| CTTTGGACATCCATTTACAG+AGG | 0.634735 | 4.1:-18746988 | None:intergenic |
| GATACTGAATAACTAATACA+AGG | 0.635441 | 4.1:-18747422 | None:intergenic |
| CAGCCCTTACTATATATGGA+AGG | 0.636193 | 4.1:-18745523 | None:intergenic |
| AAACTTGCATGACTGTAAGA+GGG | 0.641918 | 4.1:-18750472 | None:intergenic |
| AACATACAAAGAATATCCCT+AGG | 0.642294 | 4.1:-18746831 | None:intergenic |
| AGATCAAGCTTGTCTCTTTG+GGG | 0.645589 | 4.1:+18750326 | MS.gene36453:CDS |
| CAAAGTTGCAGAACCTCCAG+AGG | 0.647199 | 4.1:+18747818 | MS.gene36453:CDS |
| AACGGCTCTATGAGACTGCA+GGG | 0.648196 | 4.1:+18747189 | MS.gene36453:CDS |
| AGTGTGCAACGGTAAAGAGA+TGG | 0.648687 | 4.1:-18743265 | None:intergenic |
| GTGTAAATGTATTAATCCTG+AGG | 0.650161 | 4.1:+18745478 | MS.gene36453:CDS |
| CAGAGAACAGTTCAACCAGT+GGG | 0.653322 | 4.1:+18750524 | MS.gene36453:CDS |
| ATATCTGATCATCCGCTCAG+TGG | 0.657249 | 4.1:+18745362 | MS.gene36453:CDS |
| TGACTTATAATGGAAAAGAG+AGG | 0.658235 | 4.1:-18746879 | None:intergenic |
| GGCAACAAAAGAACGTCCTG+TGG | 0.659882 | 4.1:+18743105 | MS.gene36453:CDS |
| TACCACAAGAGTTAACTGGA+GGG | 0.660610 | 4.1:+18746800 | MS.gene36453:CDS |
| TAAATGTATTAATCCTGAGG+TGG | 0.668210 | 4.1:+18745481 | MS.gene36453:CDS |
| TTACCACAAGAGTTAACTGG+AGG | 0.668917 | 4.1:+18746799 | MS.gene36453:CDS |
| GATGTGATTGAATGTGCCAA+CGG | 0.669639 | 4.1:+18746963 | MS.gene36453:CDS |
| TGCACGGCACAATTATAATG+TGG | 0.686062 | 4.1:+18750560 | MS.gene36453:CDS |
| GGTTAAGCATTCCTCAGACG+AGG | 0.687251 | 4.1:+18743242 | MS.gene36453:CDS |
| TAGCATGCATCGGATATACA+CGG | 0.687540 | 4.1:+18746063 | MS.gene36453:CDS |
| AACTCACTAGAAGATAAGGA+CGG | 0.690279 | 4.1:-18747644 | None:intergenic |
| CCATGATAGAAGTTTCAATG+AGG | 0.694184 | 4.1:-18747129 | None:intergenic |
| AATTTACAAATTATCCAGAG+AGG | 0.695325 | 4.1:+18746746 | MS.gene36453:CDS |
| CCAGAGAACAGTTCAACCAG+TGG | 0.708997 | 4.1:+18750523 | MS.gene36453:CDS |
| GCCCGAATGTGACCACTGAG+CGG | 0.712193 | 4.1:-18745374 | None:intergenic |
| CTTCCTATAACAATCCTCAG+GGG | 0.761413 | 4.1:-18747084 | None:intergenic |
| TGTGATTGAATGTGCCAACG+GGG | 0.767832 | 4.1:+18746965 | MS.gene36453:CDS |
| CTTCTAGGGAAGACTCCCGG+GGG | 0.792503 | 4.1:+18746723 | MS.gene36453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18743103 | 18750743 | 18743103 | ID=MS.gene36453 |
| chr4.1 | mRNA | 18743103 | 18750743 | 18743103 | ID=MS.gene36453.t1;Parent=MS.gene36453 |
| chr4.1 | exon | 18743103 | 18743375 | 18743103 | ID=MS.gene36453.t1.exon1;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18743103 | 18743375 | 18743103 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18744356 | 18744445 | 18744356 | ID=MS.gene36453.t1.exon2;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18744356 | 18744445 | 18744356 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18745356 | 18745810 | 18745356 | ID=MS.gene36453.t1.exon3;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18745356 | 18745810 | 18745356 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18745890 | 18746135 | 18745890 | ID=MS.gene36453.t1.exon4;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18745890 | 18746135 | 18745890 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18746719 | 18747659 | 18746719 | ID=MS.gene36453.t1.exon5;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18746719 | 18747659 | 18746719 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18747784 | 18747935 | 18747784 | ID=MS.gene36453.t1.exon6;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18747784 | 18747935 | 18747784 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18748016 | 18748132 | 18748016 | ID=MS.gene36453.t1.exon7;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18748016 | 18748132 | 18748016 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18749332 | 18749469 | 18749332 | ID=MS.gene36453.t1.exon8;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18749332 | 18749469 | 18749332 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| chr4.1 | exon | 18750306 | 18750743 | 18750306 | ID=MS.gene36453.t1.exon9;Parent=MS.gene36453.t1 |
| chr4.1 | CDS | 18750306 | 18750743 | 18750306 | ID=cds.MS.gene36453.t1;Parent=MS.gene36453.t1 |
| Gene Sequence |
| Protein sequence |
