Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39695.t1 | XP_003626769.1 | 98.5 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 3.40E-97 | 364.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39695.t1 | Q41000 | 83.7 | 196 | 32 | 0 | 1 | 196 | 1 | 196 | 7.9e-87 | 321.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39695.t1 | G7LCJ4 | 98.5 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 2.4e-97 | 364.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049289 | MS.gene39695 | 0.824219 | 9.09E-54 | -1.69E-46 |
MS.gene049293 | MS.gene39695 | 0.802658 | 5.05E-49 | -1.69E-46 |
MS.gene049321 | MS.gene39695 | 0.801367 | 9.31E-49 | -1.69E-46 |
MS.gene049378 | MS.gene39695 | -0.817714 | 2.86E-52 | -1.69E-46 |
MS.gene049419 | MS.gene39695 | 0.898397 | 5.52E-77 | -1.69E-46 |
MS.gene049669 | MS.gene39695 | -0.821886 | 3.18E-53 | -1.69E-46 |
MS.gene04995 | MS.gene39695 | 0.825356 | 4.90E-54 | -1.69E-46 |
MS.gene050105 | MS.gene39695 | -0.881826 | 1.74E-70 | -1.69E-46 |
MS.gene050750 | MS.gene39695 | -0.800549 | 1.37E-48 | -1.69E-46 |
MS.gene050905 | MS.gene39695 | 0.802107 | 6.56E-49 | -1.69E-46 |
MS.gene050953 | MS.gene39695 | -0.810691 | 1.02E-50 | -1.69E-46 |
MS.gene051064 | MS.gene39695 | -0.831355 | 1.75E-55 | -1.69E-46 |
MS.gene051122 | MS.gene39695 | -0.840453 | 8.62E-58 | -1.69E-46 |
MS.gene051332 | MS.gene39695 | -0.800802 | 1.21E-48 | -1.69E-46 |
MS.gene051368 | MS.gene39695 | -0.836291 | 1.02E-56 | -1.69E-46 |
MS.gene051793 | MS.gene39695 | 0.820061 | 8.37E-53 | -1.69E-46 |
MS.gene051828 | MS.gene39695 | 0.808537 | 2.95E-50 | -1.69E-46 |
MS.gene051924 | MS.gene39695 | 0.852986 | 3.22E-61 | -1.69E-46 |
MS.gene051926 | MS.gene39695 | 0.879012 | 1.76E-69 | -1.69E-46 |
MS.gene05216 | MS.gene39695 | -0.839176 | 1.85E-57 | -1.69E-46 |
MS.gene052333 | MS.gene39695 | -0.84668 | 1.87E-59 | -1.69E-46 |
MS.gene052358 | MS.gene39695 | 0.810063 | 1.39E-50 | -1.69E-46 |
MS.gene052389 | MS.gene39695 | -0.810554 | 1.09E-50 | -1.69E-46 |
MS.gene052534 | MS.gene39695 | -0.802889 | 4.53E-49 | -1.69E-46 |
MS.gene052586 | MS.gene39695 | -0.848238 | 6.96E-60 | -1.69E-46 |
MS.gene052674 | MS.gene39695 | -0.823464 | 1.37E-53 | -1.69E-46 |
MS.gene052675 | MS.gene39695 | -0.824356 | 8.44E-54 | -1.69E-46 |
MS.gene052677 | MS.gene39695 | -0.827085 | 1.90E-54 | -1.69E-46 |
MS.gene052954 | MS.gene39695 | -0.808981 | 2.37E-50 | -1.69E-46 |
MS.gene052965 | MS.gene39695 | 0.834014 | 3.83E-56 | -1.69E-46 |
MS.gene053166 | MS.gene39695 | -0.829708 | 4.42E-55 | -1.69E-46 |
MS.gene053340 | MS.gene39695 | -0.821742 | 3.43E-53 | -1.69E-46 |
MS.gene053963 | MS.gene39695 | -0.806255 | 8.99E-50 | -1.69E-46 |
MS.gene05415 | MS.gene39695 | -0.815516 | 8.88E-52 | -1.69E-46 |
MS.gene054291 | MS.gene39695 | 0.840291 | 9.50E-58 | -1.69E-46 |
MS.gene054405 | MS.gene39695 | -0.804699 | 1.91E-49 | -1.69E-46 |
MS.gene054468 | MS.gene39695 | -0.813734 | 2.20E-51 | -1.69E-46 |
MS.gene054479 | MS.gene39695 | -0.855608 | 5.63E-62 | -1.69E-46 |
MS.gene054657 | MS.gene39695 | -0.805109 | 1.56E-49 | -1.69E-46 |
MS.gene054950 | MS.gene39695 | 0.864821 | 9.23E-65 | -1.69E-46 |
MS.gene055063 | MS.gene39695 | 0.827662 | 1.38E-54 | -1.69E-46 |
MS.gene055225 | MS.gene39695 | -0.837784 | 4.24E-57 | -1.69E-46 |
MS.gene055453 | MS.gene39695 | 0.822501 | 2.29E-53 | -1.69E-46 |
MS.gene055701 | MS.gene39695 | -0.884824 | 1.38E-71 | -1.69E-46 |
MS.gene055841 | MS.gene39695 | -0.806724 | 7.16E-50 | -1.69E-46 |
MS.gene056064 | MS.gene39695 | -0.842601 | 2.34E-58 | -1.69E-46 |
MS.gene056068 | MS.gene39695 | -0.826351 | 2.84E-54 | -1.69E-46 |
MS.gene056506 | MS.gene39695 | -0.803588 | 3.25E-49 | -1.69E-46 |
MS.gene056776 | MS.gene39695 | -0.807941 | 3.95E-50 | -1.69E-46 |
MS.gene056779 | MS.gene39695 | -0.837797 | 4.20E-57 | -1.69E-46 |
MS.gene057026 | MS.gene39695 | -0.846654 | 1.90E-59 | -1.69E-46 |
MS.gene057156 | MS.gene39695 | 0.91178 | 4.13E-83 | -1.69E-46 |
MS.gene057208 | MS.gene39695 | -0.831924 | 1.27E-55 | -1.69E-46 |
MS.gene058081 | MS.gene39695 | -0.813993 | 1.93E-51 | -1.69E-46 |
MS.gene058223 | MS.gene39695 | 0.865149 | 7.28E-65 | -1.69E-46 |
MS.gene058498 | MS.gene39695 | -0.830234 | 3.29E-55 | -1.69E-46 |
MS.gene058500 | MS.gene39695 | -0.822613 | 2.16E-53 | -1.69E-46 |
MS.gene059710 | MS.gene39695 | -0.816876 | 4.41E-52 | -1.69E-46 |
MS.gene059952 | MS.gene39695 | -0.825384 | 4.83E-54 | -1.69E-46 |
MS.gene060634 | MS.gene39695 | 0.81925 | 1.28E-52 | -1.69E-46 |
MS.gene060850 | MS.gene39695 | -0.810653 | 1.04E-50 | -1.69E-46 |
MS.gene060851 | MS.gene39695 | -0.836929 | 7.02E-57 | -1.69E-46 |
MS.gene060852 | MS.gene39695 | -0.835647 | 1.49E-56 | -1.69E-46 |
MS.gene060879 | MS.gene39695 | -0.850471 | 1.66E-60 | -1.69E-46 |
MS.gene061040 | MS.gene39695 | 0.817322 | 3.50E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39695.t1 | MTR_8g008870 | 98.477 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 3.25e-141 | 392 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39695.t1 | AT5G47030 | 70.732 | 205 | 50 | 3 | 1 | 197 | 1 | 203 | 4.41e-101 | 290 |
Find 59 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCACTGCTTACAAAATATT+TGG | 0.143612 | 8.3:-80064276 | None:intergenic |
TTGTCGCTGAACTGAGCTTC+TGG | 0.214226 | 8.3:-80064406 | None:intergenic |
CAGTTCAGCGACAACTGATT+TGG | 0.280457 | 8.3:+80064415 | MS.gene39695:CDS |
GTCTTAGGTGGATCAAGATT+GGG | 0.302329 | 8.3:-80061147 | None:intergenic |
AGTTTGGTGGGAAGAGTAGA+AGG | 0.331246 | 8.3:-80061204 | None:intergenic |
ATGAAAGCGAGGGGTGTCTT+AGG | 0.331865 | 8.3:-80061162 | None:intergenic |
AACGAAATTGACAGTGAGTT+TGG | 0.358806 | 8.3:-80061220 | None:intergenic |
CCCATCTGGCCTGTTGTAGC+TGG | 0.367328 | 8.3:-80064176 | None:intergenic |
GCAATTGTTGCAACATGTCC+TGG | 0.384614 | 8.3:-80064206 | None:intergenic |
CGCTGTTGAGGCTGTTCCAC+TGG | 0.397290 | 8.3:+80064337 | MS.gene39695:CDS |
TGTCTTAGGTGGATCAAGAT+TGG | 0.399583 | 8.3:-80061148 | None:intergenic |
GTGGGAAGAGTAGAAGGAAT+AGG | 0.422638 | 8.3:-80061198 | None:intergenic |
ATTCCTCCTTCGTTGAAGCT+TGG | 0.449450 | 8.3:+80061112 | MS.gene39695:CDS |
GAGAAAGCTGAAGCTCAGAT+TGG | 0.456466 | 8.3:+80064437 | MS.gene39695:CDS |
TTCTCAATTGTCCGCTAAAG+AGG | 0.456746 | 8.3:+80061254 | MS.gene39695:CDS |
TGTCGCTGAACTGAGCTTCT+GGG | 0.464302 | 8.3:-80064405 | None:intergenic |
GTTATAATCCCAGCTACAAC+AGG | 0.464443 | 8.3:+80064167 | MS.gene39695:CDS |
GCGGACAATTGAGAAGCATA+AGG | 0.477432 | 8.3:-80061246 | None:intergenic |
ACAATTGCAGAGTTGAAACC+TGG | 0.489060 | 8.3:+80064221 | MS.gene39695:CDS |
GGAGAAGCGGCGAGTGGCGA+CGG | 0.501137 | 8.3:-80061064 | None:intergenic |
CCATCTGGCCTGTTGTAGCT+GGG | 0.501802 | 8.3:-80064175 | None:intergenic |
TGGCGACGGCGCGTGAGAGA+AGG | 0.505897 | 8.3:-80061050 | None:intergenic |
CCCAGCTACAACAGGCCAGA+TGG | 0.507781 | 8.3:+80064175 | MS.gene39695:CDS |
TGATGCAAGCCTTGTGCAGA+AGG | 0.512823 | 8.3:+80064367 | MS.gene39695:CDS |
GTCCTGGGAGAATACCCATC+TGG | 0.526235 | 8.3:-80064190 | None:intergenic |
CTTGAAGACCCTTCTGCACA+AGG | 0.528902 | 8.3:-80064376 | None:intergenic |
GGCCAGATGGGTATTCTCCC+AGG | 0.530017 | 8.3:+80064188 | MS.gene39695:CDS |
TATCAGCAACAGAGTTTGCA+TGG | 0.530676 | 8.3:-80064310 | None:intergenic |
TCTTGTACAATCATGACCCC+AGG | 0.535453 | 8.3:-80064239 | None:intergenic |
ACGAAGGAGGAATCAGTGAC+GGG | 0.543173 | 8.3:-80061102 | None:intergenic |
GGCGACGGCGCGTGAGAGAA+GGG | 0.548935 | 8.3:-80061049 | None:intergenic |
AGATGTAGCGCGGCGGAACA+TGG | 0.556781 | 8.3:-80061025 | None:intergenic |
GGAAGAGTAGAAGGAATAGG+AGG | 0.562952 | 8.3:-80061195 | None:intergenic |
CCAGCTACAACAGGCCAGAT+GGG | 0.564262 | 8.3:+80064176 | MS.gene39695:CDS |
CTTGCATCAATTTGATCCAG+TGG | 0.565593 | 8.3:-80064353 | None:intergenic |
TTTATTCCAAGCTTCAACGA+AGG | 0.567962 | 8.3:-80061118 | None:intergenic |
ATTCCAAGCTTCAACGAAGG+AGG | 0.569149 | 8.3:-80061115 | None:intergenic |
GGGGTCATGATTGTACAAGA+AGG | 0.576614 | 8.3:+80064242 | MS.gene39695:CDS |
GAAGAAATGAACCTCTTTAG+CGG | 0.579872 | 8.3:-80061265 | None:intergenic |
AAATTGACAGTGAGTTTGGT+GGG | 0.582688 | 8.3:-80061216 | None:intergenic |
AAAGCGAGGGGTGTCTTAGG+TGG | 0.584645 | 8.3:-80061159 | None:intergenic |
AACGAAGGAGGAATCAGTGA+CGG | 0.589978 | 8.3:-80061103 | None:intergenic |
GGGTCATGATTGTACAAGAA+GGG | 0.590188 | 8.3:+80064243 | MS.gene39695:CDS |
TAGCTACATCGGTGGAGAAG+CGG | 0.592259 | 8.3:-80061077 | None:intergenic |
GACGAGATTTGATGAAAGCG+AGG | 0.592477 | 8.3:-80061173 | None:intergenic |
GAAATTGACAGTGAGTTTGG+TGG | 0.611076 | 8.3:-80061217 | None:intergenic |
ATCGGTGGAGAAGCGGCGAG+TGG | 0.614140 | 8.3:-80061070 | None:intergenic |
ACGAGATTTGATGAAAGCGA+GGG | 0.617554 | 8.3:-80061172 | None:intergenic |
CAATTGCAGAGTTGAAACCT+GGG | 0.627022 | 8.3:+80064222 | MS.gene39695:CDS |
CAATTGTTGCAACATGTCCT+GGG | 0.627841 | 8.3:-80064205 | None:intergenic |
TCTTAGGTGGATCAAGATTG+GGG | 0.630644 | 8.3:-80061146 | None:intergenic |
TGCTGATATAATCGCTGTTG+AGG | 0.643815 | 8.3:+80064325 | MS.gene39695:CDS |
CGAAGGAGGAATCAGTGACG+GGG | 0.648705 | 8.3:-80061101 | None:intergenic |
GATGCAAGCCTTGTGCAGAA+GGG | 0.670616 | 8.3:+80064368 | MS.gene39695:CDS |
CGAGATTTGATGAAAGCGAG+GGG | 0.674012 | 8.3:-80061171 | None:intergenic |
AGAGAAGGGAAGATGTAGCG+CGG | 0.716986 | 8.3:-80061035 | None:intergenic |
GAAGGAGGAATCAGTGACGG+GGG | 0.719279 | 8.3:-80061100 | None:intergenic |
AATTGCAGAGTTGAAACCTG+GGG | 0.727229 | 8.3:+80064223 | MS.gene39695:CDS |
GAAGGGAAGATGTAGCGCGG+CGG | 0.762683 | 8.3:-80061032 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAAATGGTAAAATAAA+AGG | - | chr8.3:80062389-80062408 | None:intergenic | 10.0% |
!! | TATAACAATATATAAAAAGA+AGG | - | chr8.3:80063601-80063620 | None:intergenic | 10.0% |
!! | TTAAATAAAAAACTGTATTT+AGG | + | chr8.3:80062228-80062247 | MS.gene39695:intron | 10.0% |
!!! | AGTTTTTTATTTAACATAAA+TGG | - | chr8.3:80062222-80062241 | None:intergenic | 10.0% |
!!! | CTTTTTATATATTGTTATAA+TGG | + | chr8.3:80063602-80063621 | MS.gene39695:intron | 10.0% |
!! | AATGAAATCTCAATAATAAA+TGG | - | chr8.3:80062401-80062420 | None:intergenic | 15.0% |
!! | AATTCATTATTCAAGAAATA+CGG | - | chr8.3:80062934-80062953 | None:intergenic | 15.0% |
!! | TAATTATCTCAAATTATTAC+TGG | - | chr8.3:80062760-80062779 | None:intergenic | 15.0% |
!! | TTAAACGTATAAAATATCAA+GGG | - | chr8.3:80063204-80063223 | None:intergenic | 15.0% |
!! | TTTAAACGTATAAAATATCA+AGG | - | chr8.3:80063205-80063224 | None:intergenic | 15.0% |
!!! | AAAAATGATTTTTTTGTTGT+TGG | + | chr8.3:80061616-80061635 | MS.gene39695:intron | 15.0% |
!!! | TTTTTTATTCTTTGTTTTGT+GGG | + | chr8.3:80062610-80062629 | MS.gene39695:intron | 15.0% |
!!! | TTTTTTTATTCTTTGTTTTG+TGG | + | chr8.3:80062609-80062628 | MS.gene39695:intron | 15.0% |
!! | AAAAACTACTTCAAATAAGA+AGG | - | chr8.3:80061645-80061664 | None:intergenic | 20.0% |
!! | AAAAGAAAAAAATAACCACA+GGG | - | chr8.3:80064072-80064091 | None:intergenic | 20.0% |
!! | ACAAATCTGAATGAAAATTT+AGG | - | chr8.3:80061291-80061310 | None:intergenic | 20.0% |
!! | CAAATCTGAATGAAAATTTA+GGG | - | chr8.3:80061290-80061309 | None:intergenic | 20.0% |
!! | TGTCAGTTTAATTATCTATA+TGG | + | chr8.3:80064000-80064019 | MS.gene39695:intron | 20.0% |
!! | TTAAATCTGAATTAGTGAAT+TGG | + | chr8.3:80061452-80061471 | MS.gene39695:intron | 20.0% |
!! | TTCTCTATCAATAATGTAAA+TGG | - | chr8.3:80063637-80063656 | None:intergenic | 20.0% |
!!! | AACTAGTGGATTTTTTTTTT+GGG | + | chr8.3:80062122-80062141 | MS.gene39695:intron | 20.0% |
!!! | AATTGGCATTATTTTGAAAT+TGG | + | chr8.3:80061469-80061488 | MS.gene39695:intron | 20.0% |
!!! | ACCTAATAGAATATTTTACT+AGG | + | chr8.3:80063963-80063982 | MS.gene39695:intron | 20.0% |
!!! | ATAGACAATTTTTTAACTTC+TGG | + | chr8.3:80063065-80063084 | MS.gene39695:intron | 20.0% |
!!! | ATGACACAATTTAGTTTTAT+AGG | + | chr8.3:80064136-80064155 | MS.gene39695:intron | 20.0% |
!!! | CCTAATAGAATATTTTACTA+GGG | + | chr8.3:80063964-80063983 | MS.gene39695:intron | 20.0% |
!!! | GAACATTTTTCATATAAAAC+TGG | + | chr8.3:80063348-80063367 | MS.gene39695:intron | 20.0% |
!!! | GTTTTCAGTTTATTTTCAAA+AGG | + | chr8.3:80061952-80061971 | MS.gene39695:intron | 20.0% |
!!! | TAACTAGTGGATTTTTTTTT+TGG | + | chr8.3:80062121-80062140 | MS.gene39695:intron | 20.0% |
!!! | TTTTTTTTGGGTAGTATTTA+CGG | + | chr8.3:80062134-80062153 | MS.gene39695:intron | 20.0% |
! | AAACCAAAATGTATACTTCA+CGG | - | chr8.3:80063284-80063303 | None:intergenic | 25.0% |
! | AAATTGGATGAATTCATTTG+TGG | + | chr8.3:80061710-80061729 | MS.gene39695:intron | 25.0% |
! | AATAAATTAGATCACCAACT+TGG | - | chr8.3:80064027-80064046 | None:intergenic | 25.0% |
! | AGAAAAAACAACAACAAACA+CGG | - | chr8.3:80062266-80062285 | None:intergenic | 25.0% |
! | ATTGTGGAATAGGTTTAAAT+TGG | + | chr8.3:80061694-80061713 | MS.gene39695:intron | 25.0% |
! | CCCTAGTAAAATATTCTATT+AGG | - | chr8.3:80063967-80063986 | None:intergenic | 25.0% |
! | GAAAAGAAAAAAATAACCAC+AGG | - | chr8.3:80064073-80064092 | None:intergenic | 25.0% |
! | GTTTCAGCAATAAAATTACA+CGG | - | chr8.3:80062553-80062572 | None:intergenic | 25.0% |
! | TACATAATTCGAAGGTTTAT+AGG | - | chr8.3:80063535-80063554 | None:intergenic | 25.0% |
! | TAGGATTTGGATTGAATTAT+TGG | + | chr8.3:80061806-80061825 | MS.gene39695:intron | 25.0% |
! | TGATTTATGATAGTATGTCA+TGG | + | chr8.3:80061845-80061864 | MS.gene39695:intron | 25.0% |
! | TTAGAAAAAGACAATGTTAC+TGG | + | chr8.3:80063092-80063111 | MS.gene39695:intron | 25.0% |
! | TTGGATAAAAACACTACTAA+AGG | - | chr8.3:80063683-80063702 | None:intergenic | 25.0% |
!! | ATTTTTGCAAATTGGTGAAT+TGG | + | chr8.3:80061411-80061430 | MS.gene39695:intron | 25.0% |
!! | CAATCTTTTCATCACTTTAT+TGG | - | chr8.3:80063702-80063721 | None:intergenic | 25.0% |
!! | TTGTGAGATTTTAGATGATT+TGG | + | chr8.3:80061363-80061382 | MS.gene39695:intron | 25.0% |
!! | TTTTTGCAAATTGGTGAATT+GGG | + | chr8.3:80061412-80061431 | MS.gene39695:intron | 25.0% |
!!! | GTTGTTTTTTCTTTTTTGTG+TGG | + | chr8.3:80062274-80062293 | MS.gene39695:intron | 25.0% |
!!! | TAAATTGTGTCATTTTCCAA+GGG | - | chr8.3:80064129-80064148 | None:intergenic | 25.0% |
!!! | TGAAGTAGTTTTTAGATTGT+TGG | + | chr8.3:80061652-80061671 | MS.gene39695:intron | 25.0% |
!!! | TGGTTTTGATTTGTGTTTTT+GGG | + | chr8.3:80061383-80061402 | MS.gene39695:intron | 25.0% |
!!! | TTGGTTTTGATTTGTGTTTT+TGG | + | chr8.3:80061382-80061401 | MS.gene39695:intron | 25.0% |
!!! | TTGTGTGTAAGTTATTTCTA+TGG | - | chr8.3:80062034-80062053 | None:intergenic | 25.0% |
!!! | TTTAGTTTTATAGGTTGATC+TGG | + | chr8.3:80064145-80064164 | MS.gene39695:intron | 25.0% |
!!! | TTTTTTTGGGTAGTATTTAC+GGG | + | chr8.3:80062135-80062154 | MS.gene39695:intron | 25.0% |
AACTAAAACCCTTTCTTACT+AGG | - | chr8.3:80063479-80063498 | None:intergenic | 30.0% | |
AAGTAATGTTGTAGGATTTC+AGG | + | chr8.3:80062670-80062689 | MS.gene39695:intron | 30.0% | |
AATTGGGATTATTGTGGATT+AGG | + | chr8.3:80061428-80061447 | MS.gene39695:intron | 30.0% | |
ACACTGTGAAAAAATGTTGA+TGG | + | chr8.3:80063935-80063954 | MS.gene39695:intron | 30.0% | |
ATAACGAAGTGATTAGGATA+CGG | + | chr8.3:80061735-80061754 | MS.gene39695:intron | 30.0% | |
ATACGGTTGATTGAGTAAAA+TGG | + | chr8.3:80061752-80061771 | MS.gene39695:intron | 30.0% | |
ATGGAAAAACTATGCATCAA+AGG | - | chr8.3:80062203-80062222 | None:intergenic | 30.0% | |
ATTATCTATATGGACCAAGT+TGG | + | chr8.3:80064010-80064029 | MS.gene39695:intron | 30.0% | |
CAATTTACTGTGCTTAACAT+TGG | + | chr8.3:80063122-80063141 | MS.gene39695:intron | 30.0% | |
CAGGTAATACTAAAATCTGA+GGG | - | chr8.3:80062646-80062665 | None:intergenic | 30.0% | |
CTACTAGAACATATGTTTCA+TGG | + | chr8.3:80063830-80063849 | MS.gene39695:intron | 30.0% | |
CTCAAGCAATTGAAATATGT+GGG | - | chr8.3:80062444-80062463 | None:intergenic | 30.0% | |
GTAAGTTGTTTATCGAAACT+AGG | + | chr8.3:80062076-80062095 | MS.gene39695:intron | 30.0% | |
GTTAATCAACCTACTAGAAA+AGG | - | chr8.3:80062482-80062501 | None:intergenic | 30.0% | |
GTTGATTAACTTCTTAGAAG+TGG | + | chr8.3:80062492-80062511 | MS.gene39695:intron | 30.0% | |
TACGGTTGATTGAGTAAAAT+GGG | + | chr8.3:80061753-80061772 | MS.gene39695:intron | 30.0% | |
TACTGATGATTCAACTTCAA+AGG | + | chr8.3:80062162-80062181 | MS.gene39695:intron | 30.0% | |
TTATAAGAGAGCAATTGCTT+AGG | + | chr8.3:80061787-80061806 | MS.gene39695:intron | 30.0% | |
TTGAATGTAATCACTTGTGT+CGG | + | chr8.3:80062785-80062804 | MS.gene39695:intron | 30.0% | |
TTTGTAGGATATTGTGGAAT+AGG | + | chr8.3:80061684-80061703 | MS.gene39695:intron | 30.0% | |
! | ACCAAATATTTTGTAAGCAG+TGG | + | chr8.3:80064275-80064294 | MS.gene39695:CDS | 30.0% |
! | AGCTACTTTGTGTTTGTTTA+AGG | + | chr8.3:80061552-80061571 | MS.gene39695:intron | 30.0% |
! | ATTGGGATTATTGTGGATTA+GGG | + | chr8.3:80061429-80061448 | MS.gene39695:intron | 30.0% |
! | CGTGATTATATTTTGTACAC+AGG | - | chr8.3:80063572-80063591 | None:intergenic | 30.0% |
! | GCTACTTTGTGTTTGTTTAA+GGG | + | chr8.3:80061553-80061572 | MS.gene39695:intron | 30.0% |
! | TGCATTTTTGTAGGATATTG+TGG | + | chr8.3:80061678-80061697 | MS.gene39695:intron | 30.0% |
! | TTACCGTGAAGTATACATTT+TGG | + | chr8.3:80063278-80063297 | MS.gene39695:intron | 30.0% |
!! | AGTTGTTGTTAAGTGTCTTT+TGG | + | chr8.3:80063501-80063520 | MS.gene39695:intron | 30.0% |
!! | ATGTCACTTTCATGGATTAT+TGG | - | chr8.3:80063166-80063185 | None:intergenic | 30.0% |
!! | CATTTCAAATGTCACTTTCA+TGG | - | chr8.3:80063174-80063193 | None:intergenic | 30.0% |
!! | CTCAGATTTTAGTATTACCT+GGG | + | chr8.3:80062645-80062664 | MS.gene39695:intron | 30.0% |
!! | GTTCTTGTTATTGTTGTTGA+TGG | + | chr8.3:80061309-80061328 | MS.gene39695:intron | 30.0% |
!! | GTTGTTTTCATAAGCTATCT+TGG | - | chr8.3:80061981-80062000 | None:intergenic | 30.0% |
!! | TGTCACTTTCATGGATTATT+GGG | - | chr8.3:80063165-80063184 | None:intergenic | 30.0% |
!!! | ATCAACATTTTTTCACAGTG+TGG | - | chr8.3:80063936-80063955 | None:intergenic | 30.0% |
!!! | CTAAATTGTGTCATTTTCCA+AGG | - | chr8.3:80064130-80064149 | None:intergenic | 30.0% |
!!! | TGTTGGTTTTGCATTTTTGT+AGG | + | chr8.3:80061669-80061688 | MS.gene39695:intron | 30.0% |
!!! | TTTTTTGGGTAGTATTTACG+GGG | + | chr8.3:80062136-80062155 | MS.gene39695:intron | 30.0% |
AAAAAAATAACCACAGGGCA+GGG | - | chr8.3:80064067-80064086 | None:intergenic | 35.0% | |
AAATTGACAGTGAGTTTGGT+GGG | - | chr8.3:80061219-80061238 | None:intergenic | 35.0% | |
AACGAAATTGACAGTGAGTT+TGG | - | chr8.3:80061223-80061242 | None:intergenic | 35.0% | |
AATCGTACAAATCTGTGTGA+TGG | + | chr8.3:80063881-80063900 | MS.gene39695:intron | 35.0% | |
ACGGTTGATTGAGTAAAATG+GGG | + | chr8.3:80061754-80061773 | MS.gene39695:intron | 35.0% | |
ATGGTCATTCTTAATCCTTG+TGG | + | chr8.3:80063900-80063919 | MS.gene39695:intron | 35.0% | |
ATGTCGTTAACTGTAACTAG+TGG | + | chr8.3:80062108-80062127 | MS.gene39695:intron | 35.0% | |
ATGTTTCATGGCACACTATT+TGG | + | chr8.3:80063842-80063861 | MS.gene39695:intron | 35.0% | |
ATTACTGCTAGAACATGCAT+TGG | + | chr8.3:80063745-80063764 | MS.gene39695:intron | 35.0% | |
CATAATACCGACACAATTGA+AGG | - | chr8.3:80062847-80062866 | None:intergenic | 35.0% | |
CCACATATTTCAATTGCTTG+AGG | + | chr8.3:80062442-80062461 | MS.gene39695:intron | 35.0% | |
CCAGGTAATACTAAAATCTG+AGG | - | chr8.3:80062647-80062666 | None:intergenic | 35.0% | |
CCTCAAGCAATTGAAATATG+TGG | - | chr8.3:80062445-80062464 | None:intergenic | 35.0% | |
GAAGAAATGAACCTCTTTAG+CGG | - | chr8.3:80061268-80061287 | None:intergenic | 35.0% | |
GATTGAGTAAAATGGGGATA+AGG | + | chr8.3:80061760-80061779 | MS.gene39695:intron | 35.0% | |
GCCACTGCTTACAAAATATT+TGG | - | chr8.3:80064279-80064298 | None:intergenic | 35.0% | |
GTACCAACACTTCTAATTGA+AGG | - | chr8.3:80062899-80062918 | None:intergenic | 35.0% | |
GTGGAAATAACGAAGTGATT+AGG | + | chr8.3:80061729-80061748 | MS.gene39695:intron | 35.0% | |
GTGGGCAAAAACATAACATA+AGG | - | chr8.3:80062426-80062445 | None:intergenic | 35.0% | |
TGGACAGATACATAATTCGA+AGG | - | chr8.3:80063543-80063562 | None:intergenic | 35.0% | |
TTATCTCAAATGCTACATCG+TGG | + | chr8.3:80063020-80063039 | MS.gene39695:intron | 35.0% | |
TTCCAAGGGAAGAAGAATTA+AGG | - | chr8.3:80064115-80064134 | None:intergenic | 35.0% | |
TTCCTTAATTCTTCTTCCCT+TGG | + | chr8.3:80064110-80064129 | MS.gene39695:intron | 35.0% | |
TTGGTGAATTGGGATTATTG+TGG | + | chr8.3:80061422-80061441 | MS.gene39695:intron | 35.0% | |
TTTATTCCAAGCTTCAACGA+AGG | - | chr8.3:80061121-80061140 | None:intergenic | 35.0% | |
! | AGTAGTCGCTTCTTTTATCA+TGG | - | chr8.3:80063815-80063834 | None:intergenic | 35.0% |
! | ATGCCTTCAATTAGAAGTGT+TGG | + | chr8.3:80062893-80062912 | MS.gene39695:intron | 35.0% |
! | ATTTTGTACACAGGTTGTAG+TGG | - | chr8.3:80063563-80063582 | None:intergenic | 35.0% |
! | CAATTGTGTCGGTATTATGT+TGG | + | chr8.3:80062848-80062867 | MS.gene39695:intron | 35.0% |
! | TAACCATGCTCCATTTTCTA+GGG | + | chr8.3:80062344-80062363 | MS.gene39695:intron | 35.0% |
! | TCTGCTTAGTTGACTTATCT+AGG | + | chr8.3:80061890-80061909 | MS.gene39695:intron | 35.0% |
! | TTAACCATGCTCCATTTTCT+AGG | + | chr8.3:80062343-80062362 | MS.gene39695:intron | 35.0% |
! | TTTGTGCAACAGCTCTTTTA+AGG | + | chr8.3:80063301-80063320 | MS.gene39695:intron | 35.0% |
!! | AGTATGTCATGGTGTCATTA+GGG | + | chr8.3:80061856-80061875 | MS.gene39695:intron | 35.0% |
!! | CAACAGCTCTTTTAAGGAAT+GGG | + | chr8.3:80063307-80063326 | MS.gene39695:intron | 35.0% |
!! | CCTCAGATTTTAGTATTACC+TGG | + | chr8.3:80062644-80062663 | MS.gene39695:intron | 35.0% |
!! | TAGAAGTGTTGGTACTACAT+AGG | + | chr8.3:80062904-80062923 | MS.gene39695:intron | 35.0% |
!! | TAGTATGTCATGGTGTCATT+AGG | + | chr8.3:80061855-80061874 | MS.gene39695:intron | 35.0% |
!!! | TTTTTGGGTAGTATTTACGG+GGG | + | chr8.3:80062137-80062156 | MS.gene39695:intron | 35.0% |
!!! | TTTTTTCACAGTGTGGTTCA+TGG | - | chr8.3:80063929-80063948 | None:intergenic | 35.0% |
AAACCCTTTCTTACTAGGTG+TGG | - | chr8.3:80063474-80063493 | None:intergenic | 40.0% | |
AAAGCTCAGAAATCACCACA+TGG | - | chr8.3:80063241-80063260 | None:intergenic | 40.0% | |
AAGTTGAACAGTTGACCATG+TGG | + | chr8.3:80063223-80063242 | MS.gene39695:intron | 40.0% | |
AATTGCAGAGTTGAAACCTG+GGG | + | chr8.3:80064223-80064242 | MS.gene39695:CDS | 40.0% | |
ACAATTGCAGAGTTGAAACC+TGG | + | chr8.3:80064221-80064240 | MS.gene39695:CDS | 40.0% | |
ACCTACTAGAAAAGGAATGC+AGG | - | chr8.3:80062474-80062493 | None:intergenic | 40.0% | |
ACGAGATTTGATGAAAGCGA+GGG | - | chr8.3:80061175-80061194 | None:intergenic | 40.0% | |
AGATTTGTACGATTGCTGCA+TGG | - | chr8.3:80063875-80063894 | None:intergenic | 40.0% | |
ATGAGAAGACAAGCACATCA+AGG | - | chr8.3:80062985-80063004 | None:intergenic | 40.0% | |
CAATTGCAGAGTTGAAACCT+GGG | + | chr8.3:80064222-80064241 | MS.gene39695:CDS | 40.0% | |
CAATTGTTGCAACATGTCCT+GGG | - | chr8.3:80064208-80064227 | None:intergenic | 40.0% | |
CCTACAACATTACTTTACCC+AGG | - | chr8.3:80062665-80062684 | None:intergenic | 40.0% | |
CCTGGGTAAAGTAATGTTGT+AGG | + | chr8.3:80062662-80062681 | MS.gene39695:intron | 40.0% | |
CTTGCATCAATTTGATCCAG+TGG | - | chr8.3:80064356-80064375 | None:intergenic | 40.0% | |
GAAAAAAATAACCACAGGGC+AGG | - | chr8.3:80064068-80064087 | None:intergenic | 40.0% | |
GAAATTGACAGTGAGTTTGG+TGG | - | chr8.3:80061220-80061239 | None:intergenic | 40.0% | |
GAGAGCAATTGCTTAGGATT+TGG | + | chr8.3:80061793-80061812 | MS.gene39695:intron | 40.0% | |
GGGTCATGATTGTACAAGAA+GGG | + | chr8.3:80064243-80064262 | MS.gene39695:CDS | 40.0% | |
GTCTTAGGTGGATCAAGATT+GGG | - | chr8.3:80061150-80061169 | None:intergenic | 40.0% | |
GTTAAGCACAGTAAATTGCC+TGG | - | chr8.3:80063120-80063139 | None:intergenic | 40.0% | |
GTTATAATCCCAGCTACAAC+AGG | + | chr8.3:80064167-80064186 | MS.gene39695:CDS | 40.0% | |
TATCAGCAACAGAGTTTGCA+TGG | - | chr8.3:80064313-80064332 | None:intergenic | 40.0% | |
TCAACTAAGCAGATCCAAAC+AGG | - | chr8.3:80061883-80061902 | None:intergenic | 40.0% | |
TCTTAGGTGGATCAAGATTG+GGG | - | chr8.3:80061149-80061168 | None:intergenic | 40.0% | |
TGACATGCCTTCAATTGTGT+CGG | + | chr8.3:80062837-80062856 | MS.gene39695:intron | 40.0% | |
TGACCACACCTAGTAAGAAA+GGG | + | chr8.3:80063468-80063487 | MS.gene39695:intron | 40.0% | |
TGCTGATATAATCGCTGTTG+AGG | + | chr8.3:80064325-80064344 | MS.gene39695:CDS | 40.0% | |
TGTCTTAGGTGGATCAAGAT+TGG | - | chr8.3:80061151-80061170 | None:intergenic | 40.0% | |
TTCTCAATTGTCCGCTAAAG+AGG | + | chr8.3:80061254-80061273 | MS.gene39695:CDS | 40.0% | |
TTGACCACACCTAGTAAGAA+AGG | + | chr8.3:80063467-80063486 | MS.gene39695:intron | 40.0% | |
TTTCATGGCACACTATTTGG+AGG | + | chr8.3:80063845-80063864 | MS.gene39695:intron | 40.0% | |
! | ATTGAAGGCATGTCAATGTC+TGG | - | chr8.3:80062832-80062851 | None:intergenic | 40.0% |
! | CACTTGTGTCGGTATTTAGT+TGG | + | chr8.3:80062796-80062815 | MS.gene39695:intron | 40.0% |
! | GGGTCTGCATTTTTGCAAAT+TGG | + | chr8.3:80061403-80061422 | MS.gene39695:intron | 40.0% |
!! | AAGACAATGTTACTGGTTCC+AGG | + | chr8.3:80063099-80063118 | MS.gene39695:intron | 40.0% |
!! | ACCTGCATTCCTTTTCTAGT+AGG | + | chr8.3:80062470-80062489 | MS.gene39695:intron | 40.0% |
!! | GCAACAGCTCTTTTAAGGAA+TGG | + | chr8.3:80063306-80063325 | MS.gene39695:intron | 40.0% |
!! | GTATGTCATGGTGTCATTAG+GGG | + | chr8.3:80061857-80061876 | MS.gene39695:intron | 40.0% |
!! | TATGAAGCACTGCACATACA+CGG | + | chr8.3:80062718-80062737 | MS.gene39695:intron | 40.0% |
AACGAAGGAGGAATCAGTGA+CGG | - | chr8.3:80061106-80061125 | None:intergenic | 45.0% | |
ACTAGGTGTGGTCAACTACA+TGG | - | chr8.3:80063462-80063481 | None:intergenic | 45.0% | |
ATTCCAAGCTTCAACGAAGG+AGG | - | chr8.3:80061118-80061137 | None:intergenic | 45.0% | |
ATTCCTCCTTCGTTGAAGCT+TGG | + | chr8.3:80061112-80061131 | MS.gene39695:CDS | 45.0% | |
CAGTTCAGCGACAACTGATT+TGG | + | chr8.3:80064415-80064434 | MS.gene39695:CDS | 45.0% | |
CGAGATTTGATGAAAGCGAG+GGG | - | chr8.3:80061174-80061193 | None:intergenic | 45.0% | |
CTAGGTGTGGTCAACTACAT+GGG | - | chr8.3:80063461-80063480 | None:intergenic | 45.0% | |
GACGAGATTTGATGAAAGCG+AGG | - | chr8.3:80061176-80061195 | None:intergenic | 45.0% | |
GAGAAAGCTGAAGCTCAGAT+TGG | + | chr8.3:80064437-80064456 | MS.gene39695:CDS | 45.0% | |
GCAATTGTTGCAACATGTCC+TGG | - | chr8.3:80064209-80064228 | None:intergenic | 45.0% | |
GGAAGAGTAGAAGGAATAGG+AGG | - | chr8.3:80061198-80061217 | None:intergenic | 45.0% | |
GGGGTCATGATTGTACAAGA+AGG | + | chr8.3:80064242-80064261 | MS.gene39695:CDS | 45.0% | |
GTGATCACAGCCCTAGAAAA+TGG | - | chr8.3:80062357-80062376 | None:intergenic | 45.0% | |
GTGGGAAGAGTAGAAGGAAT+AGG | - | chr8.3:80061201-80061220 | None:intergenic | 45.0% | |
GTGGTGATTTCTGAGCTTTG+AGG | + | chr8.3:80063242-80063261 | MS.gene39695:intron | 45.0% | |
GTGTATGTGCAGTGCTTCAT+AGG | - | chr8.3:80062719-80062738 | None:intergenic | 45.0% | |
TCTTGTACAATCATGACCCC+AGG | - | chr8.3:80064242-80064261 | None:intergenic | 45.0% | |
TGTGGTTCATGGATTCCACA+AGG | - | chr8.3:80063918-80063937 | None:intergenic | 45.0% | |
! | AGTTTGGTGGGAAGAGTAGA+AGG | - | chr8.3:80061207-80061226 | None:intergenic | 45.0% |
! | GCGGACAATTGAGAAGCATA+AGG | - | chr8.3:80061249-80061268 | None:intergenic | 45.0% |
ACGAAGGAGGAATCAGTGAC+GGG | - | chr8.3:80061105-80061124 | None:intergenic | 50.0% | |
AGAGAAGGGAAGATGTAGCG+CGG | - | chr8.3:80061038-80061057 | None:intergenic | 50.0% | |
AGGCATGTCAATGTCTGGCA+CGG | - | chr8.3:80062827-80062846 | None:intergenic | 50.0% | |
CAGCCCTAGAAAATGGAGCA+TGG | - | chr8.3:80062350-80062369 | None:intergenic | 50.0% | |
CTTGAAGACCCTTCTGCACA+AGG | - | chr8.3:80064379-80064398 | None:intergenic | 50.0% | |
TAGCTACATCGGTGGAGAAG+CGG | - | chr8.3:80061080-80061099 | None:intergenic | 50.0% | |
TGTCGCTGAACTGAGCTTCT+GGG | - | chr8.3:80064408-80064427 | None:intergenic | 50.0% | |
TTGTCGCTGAACTGAGCTTC+TGG | - | chr8.3:80064409-80064428 | None:intergenic | 50.0% | |
! | GATGCAAGCCTTGTGCAGAA+GGG | + | chr8.3:80064368-80064387 | MS.gene39695:CDS | 50.0% |
! | TGATGCAAGCCTTGTGCAGA+AGG | + | chr8.3:80064367-80064386 | MS.gene39695:CDS | 50.0% |
!! | ATGAAAGCGAGGGGTGTCTT+AGG | - | chr8.3:80061165-80061184 | None:intergenic | 50.0% |
!! | GGTATTATGTTGGTGCCACC+AGG | + | chr8.3:80062858-80062877 | MS.gene39695:intron | 50.0% |
AGGCATGTCAATGTCTGGCC+TGG | - | chr8.3:80062879-80062898 | None:intergenic | 55.0% | |
CATGTCAATGTCTGGCACGG+TGG | - | chr8.3:80062824-80062843 | None:intergenic | 55.0% | |
CATGTCAATGTCTGGCCTGG+TGG | - | chr8.3:80062876-80062895 | None:intergenic | 55.0% | |
CCAGCTACAACAGGCCAGAT+GGG | + | chr8.3:80064176-80064195 | MS.gene39695:CDS | 55.0% | |
CCATCTGGCCTGTTGTAGCT+GGG | - | chr8.3:80064178-80064197 | None:intergenic | 55.0% | |
CGAAGGAGGAATCAGTGACG+GGG | - | chr8.3:80061104-80061123 | None:intergenic | 55.0% | |
GAAGGAGGAATCAGTGACGG+GGG | - | chr8.3:80061103-80061122 | None:intergenic | 55.0% | |
GTCCTGGGAGAATACCCATC+TGG | - | chr8.3:80064193-80064212 | None:intergenic | 55.0% | |
! | AGTGACGGGGGTAGCTACAT+CGG | - | chr8.3:80061091-80061110 | None:intergenic | 55.0% |
!! | AAAGCGAGGGGTGTCTTAGG+TGG | - | chr8.3:80061162-80061181 | None:intergenic | 55.0% |
!! | GGTGTCATTAGGGGCCTGTT+TGG | + | chr8.3:80061866-80061885 | MS.gene39695:intron | 55.0% |
CCCAGCTACAACAGGCCAGA+TGG | + | chr8.3:80064175-80064194 | MS.gene39695:CDS | 60.0% | |
CCCATCTGGCCTGTTGTAGC+TGG | - | chr8.3:80064179-80064198 | None:intergenic | 60.0% | |
CGCTGTTGAGGCTGTTCCAC+TGG | + | chr8.3:80064337-80064356 | MS.gene39695:CDS | 60.0% | |
GAAGGGAAGATGTAGCGCGG+CGG | - | chr8.3:80061035-80061054 | None:intergenic | 60.0% | |
GGCCAGATGGGTATTCTCCC+AGG | + | chr8.3:80064188-80064207 | MS.gene39695:CDS | 60.0% | |
ATCGGTGGAGAAGCGGCGAG+TGG | - | chr8.3:80061073-80061092 | None:intergenic | 65.0% | |
GACGGGGGTAGCTACATCGG+TGG | - | chr8.3:80061088-80061107 | None:intergenic | 65.0% | |
GCTGCTATCTCCCTGCCCTG+TGG | + | chr8.3:80064054-80064073 | MS.gene39695:intron | 65.0% | |
GGAGAAGCGGCGAGTGGCGA+CGG | - | chr8.3:80061067-80061086 | None:intergenic | 70.0% | |
GGCGACGGCGCGTGAGAGAA+GGG | - | chr8.3:80061052-80061071 | None:intergenic | 70.0% | |
TGGCGACGGCGCGTGAGAGA+AGG | - | chr8.3:80061053-80061072 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 80061027 | 80064502 | 80061027 | ID=MS.gene39695 |
chr8.3 | mRNA | 80061027 | 80064502 | 80061027 | ID=MS.gene39695.t1;Parent=MS.gene39695 |
chr8.3 | exon | 80061027 | 80061275 | 80061027 | ID=MS.gene39695.t1.exon1;Parent=MS.gene39695.t1 |
chr8.3 | CDS | 80061027 | 80061275 | 80061027 | ID=cds.MS.gene39695.t1;Parent=MS.gene39695.t1 |
chr8.3 | exon | 80064158 | 80064502 | 80064158 | ID=MS.gene39695.t1.exon2;Parent=MS.gene39695.t1 |
chr8.3 | CDS | 80064158 | 80064502 | 80064158 | ID=cds.MS.gene39695.t1;Parent=MS.gene39695.t1 |
Gene Sequence |
Protein sequence |