AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39695


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39695.t1 MTR_8g008870 98.477 197 3 0 1 197 1 197 3.25e-141 392
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39695.t1 AT5G47030 70.732 205 50 3 1 197 1 203 4.41e-101 290

Find 59 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCACTGCTTACAAAATATT+TGG 0.143612 8.3:-80064276 None:intergenic
TTGTCGCTGAACTGAGCTTC+TGG 0.214226 8.3:-80064406 None:intergenic
CAGTTCAGCGACAACTGATT+TGG 0.280457 8.3:+80064415 MS.gene39695:CDS
GTCTTAGGTGGATCAAGATT+GGG 0.302329 8.3:-80061147 None:intergenic
AGTTTGGTGGGAAGAGTAGA+AGG 0.331246 8.3:-80061204 None:intergenic
ATGAAAGCGAGGGGTGTCTT+AGG 0.331865 8.3:-80061162 None:intergenic
AACGAAATTGACAGTGAGTT+TGG 0.358806 8.3:-80061220 None:intergenic
CCCATCTGGCCTGTTGTAGC+TGG 0.367328 8.3:-80064176 None:intergenic
GCAATTGTTGCAACATGTCC+TGG 0.384614 8.3:-80064206 None:intergenic
CGCTGTTGAGGCTGTTCCAC+TGG 0.397290 8.3:+80064337 MS.gene39695:CDS
TGTCTTAGGTGGATCAAGAT+TGG 0.399583 8.3:-80061148 None:intergenic
GTGGGAAGAGTAGAAGGAAT+AGG 0.422638 8.3:-80061198 None:intergenic
ATTCCTCCTTCGTTGAAGCT+TGG 0.449450 8.3:+80061112 MS.gene39695:CDS
GAGAAAGCTGAAGCTCAGAT+TGG 0.456466 8.3:+80064437 MS.gene39695:CDS
TTCTCAATTGTCCGCTAAAG+AGG 0.456746 8.3:+80061254 MS.gene39695:CDS
TGTCGCTGAACTGAGCTTCT+GGG 0.464302 8.3:-80064405 None:intergenic
GTTATAATCCCAGCTACAAC+AGG 0.464443 8.3:+80064167 MS.gene39695:CDS
GCGGACAATTGAGAAGCATA+AGG 0.477432 8.3:-80061246 None:intergenic
ACAATTGCAGAGTTGAAACC+TGG 0.489060 8.3:+80064221 MS.gene39695:CDS
GGAGAAGCGGCGAGTGGCGA+CGG 0.501137 8.3:-80061064 None:intergenic
CCATCTGGCCTGTTGTAGCT+GGG 0.501802 8.3:-80064175 None:intergenic
TGGCGACGGCGCGTGAGAGA+AGG 0.505897 8.3:-80061050 None:intergenic
CCCAGCTACAACAGGCCAGA+TGG 0.507781 8.3:+80064175 MS.gene39695:CDS
TGATGCAAGCCTTGTGCAGA+AGG 0.512823 8.3:+80064367 MS.gene39695:CDS
GTCCTGGGAGAATACCCATC+TGG 0.526235 8.3:-80064190 None:intergenic
CTTGAAGACCCTTCTGCACA+AGG 0.528902 8.3:-80064376 None:intergenic
GGCCAGATGGGTATTCTCCC+AGG 0.530017 8.3:+80064188 MS.gene39695:CDS
TATCAGCAACAGAGTTTGCA+TGG 0.530676 8.3:-80064310 None:intergenic
TCTTGTACAATCATGACCCC+AGG 0.535453 8.3:-80064239 None:intergenic
ACGAAGGAGGAATCAGTGAC+GGG 0.543173 8.3:-80061102 None:intergenic
GGCGACGGCGCGTGAGAGAA+GGG 0.548935 8.3:-80061049 None:intergenic
AGATGTAGCGCGGCGGAACA+TGG 0.556781 8.3:-80061025 None:intergenic
GGAAGAGTAGAAGGAATAGG+AGG 0.562952 8.3:-80061195 None:intergenic
CCAGCTACAACAGGCCAGAT+GGG 0.564262 8.3:+80064176 MS.gene39695:CDS
CTTGCATCAATTTGATCCAG+TGG 0.565593 8.3:-80064353 None:intergenic
TTTATTCCAAGCTTCAACGA+AGG 0.567962 8.3:-80061118 None:intergenic
ATTCCAAGCTTCAACGAAGG+AGG 0.569149 8.3:-80061115 None:intergenic
GGGGTCATGATTGTACAAGA+AGG 0.576614 8.3:+80064242 MS.gene39695:CDS
GAAGAAATGAACCTCTTTAG+CGG 0.579872 8.3:-80061265 None:intergenic
AAATTGACAGTGAGTTTGGT+GGG 0.582688 8.3:-80061216 None:intergenic
AAAGCGAGGGGTGTCTTAGG+TGG 0.584645 8.3:-80061159 None:intergenic
AACGAAGGAGGAATCAGTGA+CGG 0.589978 8.3:-80061103 None:intergenic
GGGTCATGATTGTACAAGAA+GGG 0.590188 8.3:+80064243 MS.gene39695:CDS
TAGCTACATCGGTGGAGAAG+CGG 0.592259 8.3:-80061077 None:intergenic
GACGAGATTTGATGAAAGCG+AGG 0.592477 8.3:-80061173 None:intergenic
GAAATTGACAGTGAGTTTGG+TGG 0.611076 8.3:-80061217 None:intergenic
ATCGGTGGAGAAGCGGCGAG+TGG 0.614140 8.3:-80061070 None:intergenic
ACGAGATTTGATGAAAGCGA+GGG 0.617554 8.3:-80061172 None:intergenic
CAATTGCAGAGTTGAAACCT+GGG 0.627022 8.3:+80064222 MS.gene39695:CDS
CAATTGTTGCAACATGTCCT+GGG 0.627841 8.3:-80064205 None:intergenic
TCTTAGGTGGATCAAGATTG+GGG 0.630644 8.3:-80061146 None:intergenic
TGCTGATATAATCGCTGTTG+AGG 0.643815 8.3:+80064325 MS.gene39695:CDS
CGAAGGAGGAATCAGTGACG+GGG 0.648705 8.3:-80061101 None:intergenic
GATGCAAGCCTTGTGCAGAA+GGG 0.670616 8.3:+80064368 MS.gene39695:CDS
CGAGATTTGATGAAAGCGAG+GGG 0.674012 8.3:-80061171 None:intergenic
AGAGAAGGGAAGATGTAGCG+CGG 0.716986 8.3:-80061035 None:intergenic
GAAGGAGGAATCAGTGACGG+GGG 0.719279 8.3:-80061100 None:intergenic
AATTGCAGAGTTGAAACCTG+GGG 0.727229 8.3:+80064223 MS.gene39695:CDS
GAAGGGAAGATGTAGCGCGG+CGG 0.762683 8.3:-80061032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATGGTAAAATAAA+AGG - chr8.3:80062389-80062408 None:intergenic 10.0%
!! TATAACAATATATAAAAAGA+AGG - chr8.3:80063601-80063620 None:intergenic 10.0%
!! TTAAATAAAAAACTGTATTT+AGG + chr8.3:80062228-80062247 MS.gene39695:intron 10.0%
!!! AGTTTTTTATTTAACATAAA+TGG - chr8.3:80062222-80062241 None:intergenic 10.0%
!!! CTTTTTATATATTGTTATAA+TGG + chr8.3:80063602-80063621 MS.gene39695:intron 10.0%
!! AATGAAATCTCAATAATAAA+TGG - chr8.3:80062401-80062420 None:intergenic 15.0%
!! AATTCATTATTCAAGAAATA+CGG - chr8.3:80062934-80062953 None:intergenic 15.0%
!! TAATTATCTCAAATTATTAC+TGG - chr8.3:80062760-80062779 None:intergenic 15.0%
!! TTAAACGTATAAAATATCAA+GGG - chr8.3:80063204-80063223 None:intergenic 15.0%
!! TTTAAACGTATAAAATATCA+AGG - chr8.3:80063205-80063224 None:intergenic 15.0%
!!! AAAAATGATTTTTTTGTTGT+TGG + chr8.3:80061616-80061635 MS.gene39695:intron 15.0%
!!! TTTTTTATTCTTTGTTTTGT+GGG + chr8.3:80062610-80062629 MS.gene39695:intron 15.0%
!!! TTTTTTTATTCTTTGTTTTG+TGG + chr8.3:80062609-80062628 MS.gene39695:intron 15.0%
!! AAAAACTACTTCAAATAAGA+AGG - chr8.3:80061645-80061664 None:intergenic 20.0%
!! AAAAGAAAAAAATAACCACA+GGG - chr8.3:80064072-80064091 None:intergenic 20.0%
!! ACAAATCTGAATGAAAATTT+AGG - chr8.3:80061291-80061310 None:intergenic 20.0%
!! CAAATCTGAATGAAAATTTA+GGG - chr8.3:80061290-80061309 None:intergenic 20.0%
!! TGTCAGTTTAATTATCTATA+TGG + chr8.3:80064000-80064019 MS.gene39695:intron 20.0%
!! TTAAATCTGAATTAGTGAAT+TGG + chr8.3:80061452-80061471 MS.gene39695:intron 20.0%
!! TTCTCTATCAATAATGTAAA+TGG - chr8.3:80063637-80063656 None:intergenic 20.0%
!!! AACTAGTGGATTTTTTTTTT+GGG + chr8.3:80062122-80062141 MS.gene39695:intron 20.0%
!!! AATTGGCATTATTTTGAAAT+TGG + chr8.3:80061469-80061488 MS.gene39695:intron 20.0%
!!! ACCTAATAGAATATTTTACT+AGG + chr8.3:80063963-80063982 MS.gene39695:intron 20.0%
!!! ATAGACAATTTTTTAACTTC+TGG + chr8.3:80063065-80063084 MS.gene39695:intron 20.0%
!!! ATGACACAATTTAGTTTTAT+AGG + chr8.3:80064136-80064155 MS.gene39695:intron 20.0%
!!! CCTAATAGAATATTTTACTA+GGG + chr8.3:80063964-80063983 MS.gene39695:intron 20.0%
!!! GAACATTTTTCATATAAAAC+TGG + chr8.3:80063348-80063367 MS.gene39695:intron 20.0%
!!! GTTTTCAGTTTATTTTCAAA+AGG + chr8.3:80061952-80061971 MS.gene39695:intron 20.0%
!!! TAACTAGTGGATTTTTTTTT+TGG + chr8.3:80062121-80062140 MS.gene39695:intron 20.0%
!!! TTTTTTTTGGGTAGTATTTA+CGG + chr8.3:80062134-80062153 MS.gene39695:intron 20.0%
! AAACCAAAATGTATACTTCA+CGG - chr8.3:80063284-80063303 None:intergenic 25.0%
! AAATTGGATGAATTCATTTG+TGG + chr8.3:80061710-80061729 MS.gene39695:intron 25.0%
! AATAAATTAGATCACCAACT+TGG - chr8.3:80064027-80064046 None:intergenic 25.0%
! AGAAAAAACAACAACAAACA+CGG - chr8.3:80062266-80062285 None:intergenic 25.0%
! ATTGTGGAATAGGTTTAAAT+TGG + chr8.3:80061694-80061713 MS.gene39695:intron 25.0%
! CCCTAGTAAAATATTCTATT+AGG - chr8.3:80063967-80063986 None:intergenic 25.0%
! GAAAAGAAAAAAATAACCAC+AGG - chr8.3:80064073-80064092 None:intergenic 25.0%
! GTTTCAGCAATAAAATTACA+CGG - chr8.3:80062553-80062572 None:intergenic 25.0%
! TACATAATTCGAAGGTTTAT+AGG - chr8.3:80063535-80063554 None:intergenic 25.0%
! TAGGATTTGGATTGAATTAT+TGG + chr8.3:80061806-80061825 MS.gene39695:intron 25.0%
! TGATTTATGATAGTATGTCA+TGG + chr8.3:80061845-80061864 MS.gene39695:intron 25.0%
! TTAGAAAAAGACAATGTTAC+TGG + chr8.3:80063092-80063111 MS.gene39695:intron 25.0%
! TTGGATAAAAACACTACTAA+AGG - chr8.3:80063683-80063702 None:intergenic 25.0%
!! ATTTTTGCAAATTGGTGAAT+TGG + chr8.3:80061411-80061430 MS.gene39695:intron 25.0%
!! CAATCTTTTCATCACTTTAT+TGG - chr8.3:80063702-80063721 None:intergenic 25.0%
!! TTGTGAGATTTTAGATGATT+TGG + chr8.3:80061363-80061382 MS.gene39695:intron 25.0%
!! TTTTTGCAAATTGGTGAATT+GGG + chr8.3:80061412-80061431 MS.gene39695:intron 25.0%
!!! GTTGTTTTTTCTTTTTTGTG+TGG + chr8.3:80062274-80062293 MS.gene39695:intron 25.0%
!!! TAAATTGTGTCATTTTCCAA+GGG - chr8.3:80064129-80064148 None:intergenic 25.0%
!!! TGAAGTAGTTTTTAGATTGT+TGG + chr8.3:80061652-80061671 MS.gene39695:intron 25.0%
!!! TGGTTTTGATTTGTGTTTTT+GGG + chr8.3:80061383-80061402 MS.gene39695:intron 25.0%
!!! TTGGTTTTGATTTGTGTTTT+TGG + chr8.3:80061382-80061401 MS.gene39695:intron 25.0%
!!! TTGTGTGTAAGTTATTTCTA+TGG - chr8.3:80062034-80062053 None:intergenic 25.0%
!!! TTTAGTTTTATAGGTTGATC+TGG + chr8.3:80064145-80064164 MS.gene39695:intron 25.0%
!!! TTTTTTTGGGTAGTATTTAC+GGG + chr8.3:80062135-80062154 MS.gene39695:intron 25.0%
AACTAAAACCCTTTCTTACT+AGG - chr8.3:80063479-80063498 None:intergenic 30.0%
AAGTAATGTTGTAGGATTTC+AGG + chr8.3:80062670-80062689 MS.gene39695:intron 30.0%
AATTGGGATTATTGTGGATT+AGG + chr8.3:80061428-80061447 MS.gene39695:intron 30.0%
ACACTGTGAAAAAATGTTGA+TGG + chr8.3:80063935-80063954 MS.gene39695:intron 30.0%
ATAACGAAGTGATTAGGATA+CGG + chr8.3:80061735-80061754 MS.gene39695:intron 30.0%
ATACGGTTGATTGAGTAAAA+TGG + chr8.3:80061752-80061771 MS.gene39695:intron 30.0%
ATGGAAAAACTATGCATCAA+AGG - chr8.3:80062203-80062222 None:intergenic 30.0%
ATTATCTATATGGACCAAGT+TGG + chr8.3:80064010-80064029 MS.gene39695:intron 30.0%
CAATTTACTGTGCTTAACAT+TGG + chr8.3:80063122-80063141 MS.gene39695:intron 30.0%
CAGGTAATACTAAAATCTGA+GGG - chr8.3:80062646-80062665 None:intergenic 30.0%
CTACTAGAACATATGTTTCA+TGG + chr8.3:80063830-80063849 MS.gene39695:intron 30.0%
CTCAAGCAATTGAAATATGT+GGG - chr8.3:80062444-80062463 None:intergenic 30.0%
GTAAGTTGTTTATCGAAACT+AGG + chr8.3:80062076-80062095 MS.gene39695:intron 30.0%
GTTAATCAACCTACTAGAAA+AGG - chr8.3:80062482-80062501 None:intergenic 30.0%
GTTGATTAACTTCTTAGAAG+TGG + chr8.3:80062492-80062511 MS.gene39695:intron 30.0%
TACGGTTGATTGAGTAAAAT+GGG + chr8.3:80061753-80061772 MS.gene39695:intron 30.0%
TACTGATGATTCAACTTCAA+AGG + chr8.3:80062162-80062181 MS.gene39695:intron 30.0%
TTATAAGAGAGCAATTGCTT+AGG + chr8.3:80061787-80061806 MS.gene39695:intron 30.0%
TTGAATGTAATCACTTGTGT+CGG + chr8.3:80062785-80062804 MS.gene39695:intron 30.0%
TTTGTAGGATATTGTGGAAT+AGG + chr8.3:80061684-80061703 MS.gene39695:intron 30.0%
! ACCAAATATTTTGTAAGCAG+TGG + chr8.3:80064275-80064294 MS.gene39695:CDS 30.0%
! AGCTACTTTGTGTTTGTTTA+AGG + chr8.3:80061552-80061571 MS.gene39695:intron 30.0%
! ATTGGGATTATTGTGGATTA+GGG + chr8.3:80061429-80061448 MS.gene39695:intron 30.0%
! CGTGATTATATTTTGTACAC+AGG - chr8.3:80063572-80063591 None:intergenic 30.0%
! GCTACTTTGTGTTTGTTTAA+GGG + chr8.3:80061553-80061572 MS.gene39695:intron 30.0%
! TGCATTTTTGTAGGATATTG+TGG + chr8.3:80061678-80061697 MS.gene39695:intron 30.0%
! TTACCGTGAAGTATACATTT+TGG + chr8.3:80063278-80063297 MS.gene39695:intron 30.0%
!! AGTTGTTGTTAAGTGTCTTT+TGG + chr8.3:80063501-80063520 MS.gene39695:intron 30.0%
!! ATGTCACTTTCATGGATTAT+TGG - chr8.3:80063166-80063185 None:intergenic 30.0%
!! CATTTCAAATGTCACTTTCA+TGG - chr8.3:80063174-80063193 None:intergenic 30.0%
!! CTCAGATTTTAGTATTACCT+GGG + chr8.3:80062645-80062664 MS.gene39695:intron 30.0%
!! GTTCTTGTTATTGTTGTTGA+TGG + chr8.3:80061309-80061328 MS.gene39695:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr8.3:80061981-80062000 None:intergenic 30.0%
!! TGTCACTTTCATGGATTATT+GGG - chr8.3:80063165-80063184 None:intergenic 30.0%
!!! ATCAACATTTTTTCACAGTG+TGG - chr8.3:80063936-80063955 None:intergenic 30.0%
!!! CTAAATTGTGTCATTTTCCA+AGG - chr8.3:80064130-80064149 None:intergenic 30.0%
!!! TGTTGGTTTTGCATTTTTGT+AGG + chr8.3:80061669-80061688 MS.gene39695:intron 30.0%
!!! TTTTTTGGGTAGTATTTACG+GGG + chr8.3:80062136-80062155 MS.gene39695:intron 30.0%
AAAAAAATAACCACAGGGCA+GGG - chr8.3:80064067-80064086 None:intergenic 35.0%
AAATTGACAGTGAGTTTGGT+GGG - chr8.3:80061219-80061238 None:intergenic 35.0%
AACGAAATTGACAGTGAGTT+TGG - chr8.3:80061223-80061242 None:intergenic 35.0%
AATCGTACAAATCTGTGTGA+TGG + chr8.3:80063881-80063900 MS.gene39695:intron 35.0%
ACGGTTGATTGAGTAAAATG+GGG + chr8.3:80061754-80061773 MS.gene39695:intron 35.0%
ATGGTCATTCTTAATCCTTG+TGG + chr8.3:80063900-80063919 MS.gene39695:intron 35.0%
ATGTCGTTAACTGTAACTAG+TGG + chr8.3:80062108-80062127 MS.gene39695:intron 35.0%
ATGTTTCATGGCACACTATT+TGG + chr8.3:80063842-80063861 MS.gene39695:intron 35.0%
ATTACTGCTAGAACATGCAT+TGG + chr8.3:80063745-80063764 MS.gene39695:intron 35.0%
CATAATACCGACACAATTGA+AGG - chr8.3:80062847-80062866 None:intergenic 35.0%
CCACATATTTCAATTGCTTG+AGG + chr8.3:80062442-80062461 MS.gene39695:intron 35.0%
CCAGGTAATACTAAAATCTG+AGG - chr8.3:80062647-80062666 None:intergenic 35.0%
CCTCAAGCAATTGAAATATG+TGG - chr8.3:80062445-80062464 None:intergenic 35.0%
GAAGAAATGAACCTCTTTAG+CGG - chr8.3:80061268-80061287 None:intergenic 35.0%
GATTGAGTAAAATGGGGATA+AGG + chr8.3:80061760-80061779 MS.gene39695:intron 35.0%
GCCACTGCTTACAAAATATT+TGG - chr8.3:80064279-80064298 None:intergenic 35.0%
GTACCAACACTTCTAATTGA+AGG - chr8.3:80062899-80062918 None:intergenic 35.0%
GTGGAAATAACGAAGTGATT+AGG + chr8.3:80061729-80061748 MS.gene39695:intron 35.0%
GTGGGCAAAAACATAACATA+AGG - chr8.3:80062426-80062445 None:intergenic 35.0%
TGGACAGATACATAATTCGA+AGG - chr8.3:80063543-80063562 None:intergenic 35.0%
TTATCTCAAATGCTACATCG+TGG + chr8.3:80063020-80063039 MS.gene39695:intron 35.0%
TTCCAAGGGAAGAAGAATTA+AGG - chr8.3:80064115-80064134 None:intergenic 35.0%
TTCCTTAATTCTTCTTCCCT+TGG + chr8.3:80064110-80064129 MS.gene39695:intron 35.0%
TTGGTGAATTGGGATTATTG+TGG + chr8.3:80061422-80061441 MS.gene39695:intron 35.0%
TTTATTCCAAGCTTCAACGA+AGG - chr8.3:80061121-80061140 None:intergenic 35.0%
! AGTAGTCGCTTCTTTTATCA+TGG - chr8.3:80063815-80063834 None:intergenic 35.0%
! ATGCCTTCAATTAGAAGTGT+TGG + chr8.3:80062893-80062912 MS.gene39695:intron 35.0%
! ATTTTGTACACAGGTTGTAG+TGG - chr8.3:80063563-80063582 None:intergenic 35.0%
! CAATTGTGTCGGTATTATGT+TGG + chr8.3:80062848-80062867 MS.gene39695:intron 35.0%
! TAACCATGCTCCATTTTCTA+GGG + chr8.3:80062344-80062363 MS.gene39695:intron 35.0%
! TCTGCTTAGTTGACTTATCT+AGG + chr8.3:80061890-80061909 MS.gene39695:intron 35.0%
! TTAACCATGCTCCATTTTCT+AGG + chr8.3:80062343-80062362 MS.gene39695:intron 35.0%
! TTTGTGCAACAGCTCTTTTA+AGG + chr8.3:80063301-80063320 MS.gene39695:intron 35.0%
!! AGTATGTCATGGTGTCATTA+GGG + chr8.3:80061856-80061875 MS.gene39695:intron 35.0%
!! CAACAGCTCTTTTAAGGAAT+GGG + chr8.3:80063307-80063326 MS.gene39695:intron 35.0%
!! CCTCAGATTTTAGTATTACC+TGG + chr8.3:80062644-80062663 MS.gene39695:intron 35.0%
!! TAGAAGTGTTGGTACTACAT+AGG + chr8.3:80062904-80062923 MS.gene39695:intron 35.0%
!! TAGTATGTCATGGTGTCATT+AGG + chr8.3:80061855-80061874 MS.gene39695:intron 35.0%
!!! TTTTTGGGTAGTATTTACGG+GGG + chr8.3:80062137-80062156 MS.gene39695:intron 35.0%
!!! TTTTTTCACAGTGTGGTTCA+TGG - chr8.3:80063929-80063948 None:intergenic 35.0%
AAACCCTTTCTTACTAGGTG+TGG - chr8.3:80063474-80063493 None:intergenic 40.0%
AAAGCTCAGAAATCACCACA+TGG - chr8.3:80063241-80063260 None:intergenic 40.0%
AAGTTGAACAGTTGACCATG+TGG + chr8.3:80063223-80063242 MS.gene39695:intron 40.0%
AATTGCAGAGTTGAAACCTG+GGG + chr8.3:80064223-80064242 MS.gene39695:CDS 40.0%
ACAATTGCAGAGTTGAAACC+TGG + chr8.3:80064221-80064240 MS.gene39695:CDS 40.0%
ACCTACTAGAAAAGGAATGC+AGG - chr8.3:80062474-80062493 None:intergenic 40.0%
ACGAGATTTGATGAAAGCGA+GGG - chr8.3:80061175-80061194 None:intergenic 40.0%
AGATTTGTACGATTGCTGCA+TGG - chr8.3:80063875-80063894 None:intergenic 40.0%
ATGAGAAGACAAGCACATCA+AGG - chr8.3:80062985-80063004 None:intergenic 40.0%
CAATTGCAGAGTTGAAACCT+GGG + chr8.3:80064222-80064241 MS.gene39695:CDS 40.0%
CAATTGTTGCAACATGTCCT+GGG - chr8.3:80064208-80064227 None:intergenic 40.0%
CCTACAACATTACTTTACCC+AGG - chr8.3:80062665-80062684 None:intergenic 40.0%
CCTGGGTAAAGTAATGTTGT+AGG + chr8.3:80062662-80062681 MS.gene39695:intron 40.0%
CTTGCATCAATTTGATCCAG+TGG - chr8.3:80064356-80064375 None:intergenic 40.0%
GAAAAAAATAACCACAGGGC+AGG - chr8.3:80064068-80064087 None:intergenic 40.0%
GAAATTGACAGTGAGTTTGG+TGG - chr8.3:80061220-80061239 None:intergenic 40.0%
GAGAGCAATTGCTTAGGATT+TGG + chr8.3:80061793-80061812 MS.gene39695:intron 40.0%
GGGTCATGATTGTACAAGAA+GGG + chr8.3:80064243-80064262 MS.gene39695:CDS 40.0%
GTCTTAGGTGGATCAAGATT+GGG - chr8.3:80061150-80061169 None:intergenic 40.0%
GTTAAGCACAGTAAATTGCC+TGG - chr8.3:80063120-80063139 None:intergenic 40.0%
GTTATAATCCCAGCTACAAC+AGG + chr8.3:80064167-80064186 MS.gene39695:CDS 40.0%
TATCAGCAACAGAGTTTGCA+TGG - chr8.3:80064313-80064332 None:intergenic 40.0%
TCAACTAAGCAGATCCAAAC+AGG - chr8.3:80061883-80061902 None:intergenic 40.0%
TCTTAGGTGGATCAAGATTG+GGG - chr8.3:80061149-80061168 None:intergenic 40.0%
TGACATGCCTTCAATTGTGT+CGG + chr8.3:80062837-80062856 MS.gene39695:intron 40.0%
TGACCACACCTAGTAAGAAA+GGG + chr8.3:80063468-80063487 MS.gene39695:intron 40.0%
TGCTGATATAATCGCTGTTG+AGG + chr8.3:80064325-80064344 MS.gene39695:CDS 40.0%
TGTCTTAGGTGGATCAAGAT+TGG - chr8.3:80061151-80061170 None:intergenic 40.0%
TTCTCAATTGTCCGCTAAAG+AGG + chr8.3:80061254-80061273 MS.gene39695:CDS 40.0%
TTGACCACACCTAGTAAGAA+AGG + chr8.3:80063467-80063486 MS.gene39695:intron 40.0%
TTTCATGGCACACTATTTGG+AGG + chr8.3:80063845-80063864 MS.gene39695:intron 40.0%
! ATTGAAGGCATGTCAATGTC+TGG - chr8.3:80062832-80062851 None:intergenic 40.0%
! CACTTGTGTCGGTATTTAGT+TGG + chr8.3:80062796-80062815 MS.gene39695:intron 40.0%
! GGGTCTGCATTTTTGCAAAT+TGG + chr8.3:80061403-80061422 MS.gene39695:intron 40.0%
!! AAGACAATGTTACTGGTTCC+AGG + chr8.3:80063099-80063118 MS.gene39695:intron 40.0%
!! ACCTGCATTCCTTTTCTAGT+AGG + chr8.3:80062470-80062489 MS.gene39695:intron 40.0%
!! GCAACAGCTCTTTTAAGGAA+TGG + chr8.3:80063306-80063325 MS.gene39695:intron 40.0%
!! GTATGTCATGGTGTCATTAG+GGG + chr8.3:80061857-80061876 MS.gene39695:intron 40.0%
!! TATGAAGCACTGCACATACA+CGG + chr8.3:80062718-80062737 MS.gene39695:intron 40.0%
AACGAAGGAGGAATCAGTGA+CGG - chr8.3:80061106-80061125 None:intergenic 45.0%
ACTAGGTGTGGTCAACTACA+TGG - chr8.3:80063462-80063481 None:intergenic 45.0%
ATTCCAAGCTTCAACGAAGG+AGG - chr8.3:80061118-80061137 None:intergenic 45.0%
ATTCCTCCTTCGTTGAAGCT+TGG + chr8.3:80061112-80061131 MS.gene39695:CDS 45.0%
CAGTTCAGCGACAACTGATT+TGG + chr8.3:80064415-80064434 MS.gene39695:CDS 45.0%
CGAGATTTGATGAAAGCGAG+GGG - chr8.3:80061174-80061193 None:intergenic 45.0%
CTAGGTGTGGTCAACTACAT+GGG - chr8.3:80063461-80063480 None:intergenic 45.0%
GACGAGATTTGATGAAAGCG+AGG - chr8.3:80061176-80061195 None:intergenic 45.0%
GAGAAAGCTGAAGCTCAGAT+TGG + chr8.3:80064437-80064456 MS.gene39695:CDS 45.0%
GCAATTGTTGCAACATGTCC+TGG - chr8.3:80064209-80064228 None:intergenic 45.0%
GGAAGAGTAGAAGGAATAGG+AGG - chr8.3:80061198-80061217 None:intergenic 45.0%
GGGGTCATGATTGTACAAGA+AGG + chr8.3:80064242-80064261 MS.gene39695:CDS 45.0%
GTGATCACAGCCCTAGAAAA+TGG - chr8.3:80062357-80062376 None:intergenic 45.0%
GTGGGAAGAGTAGAAGGAAT+AGG - chr8.3:80061201-80061220 None:intergenic 45.0%
GTGGTGATTTCTGAGCTTTG+AGG + chr8.3:80063242-80063261 MS.gene39695:intron 45.0%
GTGTATGTGCAGTGCTTCAT+AGG - chr8.3:80062719-80062738 None:intergenic 45.0%
TCTTGTACAATCATGACCCC+AGG - chr8.3:80064242-80064261 None:intergenic 45.0%
TGTGGTTCATGGATTCCACA+AGG - chr8.3:80063918-80063937 None:intergenic 45.0%
! AGTTTGGTGGGAAGAGTAGA+AGG - chr8.3:80061207-80061226 None:intergenic 45.0%
! GCGGACAATTGAGAAGCATA+AGG - chr8.3:80061249-80061268 None:intergenic 45.0%
ACGAAGGAGGAATCAGTGAC+GGG - chr8.3:80061105-80061124 None:intergenic 50.0%
AGAGAAGGGAAGATGTAGCG+CGG - chr8.3:80061038-80061057 None:intergenic 50.0%
AGGCATGTCAATGTCTGGCA+CGG - chr8.3:80062827-80062846 None:intergenic 50.0%
CAGCCCTAGAAAATGGAGCA+TGG - chr8.3:80062350-80062369 None:intergenic 50.0%
CTTGAAGACCCTTCTGCACA+AGG - chr8.3:80064379-80064398 None:intergenic 50.0%
TAGCTACATCGGTGGAGAAG+CGG - chr8.3:80061080-80061099 None:intergenic 50.0%
TGTCGCTGAACTGAGCTTCT+GGG - chr8.3:80064408-80064427 None:intergenic 50.0%
TTGTCGCTGAACTGAGCTTC+TGG - chr8.3:80064409-80064428 None:intergenic 50.0%
! GATGCAAGCCTTGTGCAGAA+GGG + chr8.3:80064368-80064387 MS.gene39695:CDS 50.0%
! TGATGCAAGCCTTGTGCAGA+AGG + chr8.3:80064367-80064386 MS.gene39695:CDS 50.0%
!! ATGAAAGCGAGGGGTGTCTT+AGG - chr8.3:80061165-80061184 None:intergenic 50.0%
!! GGTATTATGTTGGTGCCACC+AGG + chr8.3:80062858-80062877 MS.gene39695:intron 50.0%
AGGCATGTCAATGTCTGGCC+TGG - chr8.3:80062879-80062898 None:intergenic 55.0%
CATGTCAATGTCTGGCACGG+TGG - chr8.3:80062824-80062843 None:intergenic 55.0%
CATGTCAATGTCTGGCCTGG+TGG - chr8.3:80062876-80062895 None:intergenic 55.0%
CCAGCTACAACAGGCCAGAT+GGG + chr8.3:80064176-80064195 MS.gene39695:CDS 55.0%
CCATCTGGCCTGTTGTAGCT+GGG - chr8.3:80064178-80064197 None:intergenic 55.0%
CGAAGGAGGAATCAGTGACG+GGG - chr8.3:80061104-80061123 None:intergenic 55.0%
GAAGGAGGAATCAGTGACGG+GGG - chr8.3:80061103-80061122 None:intergenic 55.0%
GTCCTGGGAGAATACCCATC+TGG - chr8.3:80064193-80064212 None:intergenic 55.0%
! AGTGACGGGGGTAGCTACAT+CGG - chr8.3:80061091-80061110 None:intergenic 55.0%
!! AAAGCGAGGGGTGTCTTAGG+TGG - chr8.3:80061162-80061181 None:intergenic 55.0%
!! GGTGTCATTAGGGGCCTGTT+TGG + chr8.3:80061866-80061885 MS.gene39695:intron 55.0%
CCCAGCTACAACAGGCCAGA+TGG + chr8.3:80064175-80064194 MS.gene39695:CDS 60.0%
CCCATCTGGCCTGTTGTAGC+TGG - chr8.3:80064179-80064198 None:intergenic 60.0%
CGCTGTTGAGGCTGTTCCAC+TGG + chr8.3:80064337-80064356 MS.gene39695:CDS 60.0%
GAAGGGAAGATGTAGCGCGG+CGG - chr8.3:80061035-80061054 None:intergenic 60.0%
GGCCAGATGGGTATTCTCCC+AGG + chr8.3:80064188-80064207 MS.gene39695:CDS 60.0%
ATCGGTGGAGAAGCGGCGAG+TGG - chr8.3:80061073-80061092 None:intergenic 65.0%
GACGGGGGTAGCTACATCGG+TGG - chr8.3:80061088-80061107 None:intergenic 65.0%
GCTGCTATCTCCCTGCCCTG+TGG + chr8.3:80064054-80064073 MS.gene39695:intron 65.0%
GGAGAAGCGGCGAGTGGCGA+CGG - chr8.3:80061067-80061086 None:intergenic 70.0%
GGCGACGGCGCGTGAGAGAA+GGG - chr8.3:80061052-80061071 None:intergenic 70.0%
TGGCGACGGCGCGTGAGAGA+AGG - chr8.3:80061053-80061072 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 80061027 80064502 80061027 ID=MS.gene39695
chr8.3 mRNA 80061027 80064502 80061027 ID=MS.gene39695.t1;Parent=MS.gene39695
chr8.3 exon 80061027 80061275 80061027 ID=MS.gene39695.t1.exon1;Parent=MS.gene39695.t1
chr8.3 CDS 80061027 80061275 80061027 ID=cds.MS.gene39695.t1;Parent=MS.gene39695.t1
chr8.3 exon 80064158 80064502 80064158 ID=MS.gene39695.t1.exon2;Parent=MS.gene39695.t1
chr8.3 CDS 80064158 80064502 80064158 ID=cds.MS.gene39695.t1;Parent=MS.gene39695.t1
Gene Sequence

>MS.gene39695

ATGTTCCGCCGCGCTACATCTTCCCTTCTCTCACGCGCCGTCGCCACTCGCCGCTTCTCCACCGATGTAGCTACCCCCGTCACTGATTCCTCCTTCGTTGAAGCTTGGAATAAAGTTAGCCCCAATCTTGATCCACCTAAGACACCCCTCGCTTTCATCAAATCTCGTCCTCCTATTCCTTCTACTCTTCCCACCAAACTCACTGTCAATTTCGTTCTTCCTTATGCTTCTCAATTGTCCGCTAAAGAGGTTCATTTCTTCCCTAAATTTTCATTCAGATTTGTTCTTGTTATTGTTGTTGATGGTGACGATAATTGTATATGATTTTGTTTCGATTTGTGAGATTTTAGATGATTTGGTTTTGATTTGTGTTTTTGGGTCTGCATTTTTGCAAATTGGTGAATTGGGATTATTGTGGATTAGGGTTAAATCTGAATTAGTGAATTGGCATTATTTTGAAATTGGTGAATAAGAAAATGATTTTGATAATTTAGAGATTAATTTTAGAGATTTTATAATAAAATAAGCTACTTTGTGTTTGTTTAAGGGAATGATAAGCACTTTTTTTAAAAAACAAATTAGTTATCAAAAAAATGATTTTTTTGTTGTTGGAGACCTTCTTATTTGAAGTAGTTTTTAGATTGTTGGTTTTGCATTTTTGTAGGATATTGTGGAATAGGTTTAAATTGGATGAATTCATTTGTGGAAATAACGAAGTGATTAGGATACGGTTGATTGAGTAAAATGGGGATAAGGAAAATTATAAGAGAGCAATTGCTTAGGATTTGGATTGAATTATTGGAAAAATTTATTTGACATGATTTATGATAGTATGTCATGGTGTCATTAGGGGCCTGTTTGGATCTGCTTAGTTGACTTATCTAGGAGAACGTGTGAAAACAGTTTATGACATTGTTCATAAGCTGTTTTCAGTTTATTTTCAAAAGGTCTCCAAGATAGCTTATGAAAACAACAACTTATAAGTAACTTTATTTTATCTTTTTCCATAGAAATAACTTACACACAAGCGTTTGTGCTATAAGCTGCAAGTAAGTTGTTTATCGAAACTAGGCTTAGATCTATGTCGTTAACTGTAACTAGTGGATTTTTTTTTTGGGTAGTATTTACGGGGGCTTACTGATGATTCAACTTCAAAGGATAAACAATGTACAACCTTTGATGCATAGTTTTTCCATTTATGTTAAATAAAAAACTGTATTTAGGATCTAGTTGTTGCCGTGTTTGTTGTTGTTTTTTCTTTTTTGTGTGGAGATTGCATTCTTTACGAGTAGTAATGCTTGCTTTAAGCTCATTTCTTAACCATGCTCCATTTTCTAGGGCTGTGATCACTACTCAATACCTTTTATTTTACCATTTATTATTGAGATTTCATTGTCCTTATGTTATGTTTTTGCCCACATATTTCAATTGCTTGAGGATTAAACCTGCATTCCTTTTCTAGTAGGTTGATTAACTTCTTAGAAGTGGTTTAAGATTTTGCTGAAACAATTTTGTTGCTTCTGCCGTGTAATTTTATTGCTGAAACTTGCAGTTAGAATATAATGATTTTTGTGCTTATAGATTTTTTTATTCTTTGTTTTGTGGGAATAACAAAACCCTCAGATTTTAGTATTACCTGGGTAAAGTAATGTTGTAGGATTTCAGGTGCTTCTTCATAGTGCGTTATCTCCTATGAAGCACTGCACATACACGGCACTTACACTTCAACACCAGTAATAATTTGAGATAATTAATTAATTGAATGTAATCACTTGTGTCGGTATTTAGTTGGTGCCACCGTGCCAGACATTGACATGCCTTCAATTGTGTCGGTATTATGTTGGTGCCACCAGGCCAGACATTGACATGCCTTCAATTAGAAGTGTTGGTACTACATAGGTTATCCGTATTTCTTGAATAATGAATTGTTTATTGATACAAAACAGAACATGAAGCCTTGATGTGCTTGTCTTCTCATGTCGTTTCTCTTGTTTTATCTCAAATGCTACATCGTGGTGTAAATATAGTCAAACAAAACATAGACAATTTTTTAACTTCTGGAAATTTAGAAAAAGACAATGTTACTGGTTCCAGGCAATTTACTGTGCTTAACATTGGTTAACATAGATAGTCTTCCCAATAATCCATGAAAGTGACATTTGAAATGAGCAGCACCCTTGATATTTTATACGTTTAAAGTTGAACAGTTGACCATGTGGTGATTTCTGAGCTTTGAGGAAATGAGTTTTTTTTACCGTGAAGTATACATTTTGGTTTGTGCAACAGCTCTTTTAAGGAATGGGTTTTGAAACTCTTTCATTGAACATTTTTCATATAAAACTGGCATCTTGTTTCAAGCGTGCTATTTAAAGCTTCATTGTATATATTTTTAATGTGTTAGAACAGATAGAACATTATAGCATTGTTCGATCCCATGTAGTTGACCACACCTAGTAAGAAAGGGTTTTAGTTGTAGTTGTTGTTAAGTGTCTTTTGGTTTGCATACCTATAAACCTTCGAATTATGTATCTGTCCACTACAACCTGTGTACAAAATATAATCACGTGCGATCCTTCTTTTTATATATTGTTATAATGGATTTTCAAACCATTTACATTATTGATAGAGAAATTTCTTTTACTCTTTTCTCATGCCTTTAGTAGTGTTTTTATCCAATAAAGTGATGAAAAGATTGTCTTTAGCAATGTTTATAATGACATTACTGCTAGAACATGCATTGGTAAATTTTGAAAAAAAGAAGTGAGTGATAAAAGAAAATATCAAACCATGATAAAAGAAGCGACTACTAGAACATATGTTTCATGGCACACTATTTGGAGGCTGTCCATGCAGCAATCGTACAAATCTGTGTGATGGTCATTCTTAATCCTTGTGGAATCCATGAACCACACTGTGAAAAAATGTTGATGGTAAATACCTAATAGAATATTTTACTAGGGAACTTCACGTATTTGTCAGTTTAATTATCTATATGGACCAAGTTGGTGATCTAATTTATTTTCTAATGCTGCTATCTCCCTGCCCTGTGGTTATTTTTTTCTTTTCAGTTTTGTTGTAGAAAATTCCTTAATTCTTCTTCCCTTGGAAAATGACACAATTTAGTTTTATAGGTTGATCTGGTTATAATCCCAGCTACAACAGGCCAGATGGGTATTCTCCCAGGACATGTTGCAACAATTGCAGAGTTGAAACCTGGGGTCATGATTGTACAAGAAGGGAATGATTCAACCAAATATTTTGTAAGCAGTGGCTTCGCTTTCGTCCATGCAAACTCTGTTGCTGATATAATCGCTGTTGAGGCTGTTCCACTGGATCAAATTGATGCAAGCCTTGTGCAGAAGGGTCTTCAAGAGTTCACCCAGAAGCTCAGTTCAGCGACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTGCATAGTGCTCTCAACTCAGCTCTTACAGCCTAA

Protein sequence

>MS.gene39695.t1

MFRRATSSLLSRAVATRRFSTDVATPVTDSSFVEAWNKVSPNLDPPKTPLAFIKSRPPIPSTLPTKLTVNFVLPYASQLSAKEVDLVIIPATTGQMGILPGHVATIAELKPGVMIVQEGNDSTKYFVSSGFAFVHANSVADIIAVEAVPLDQIDASLVQKGLQEFTQKLSSATTDLEKAEAQIGVDVHSALNSALTA