Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40513.t1 | XP_003610807.1 | 89.5 | 143 | 15 | 0 | 21 | 163 | 24 | 166 | 4.50E-63 | 250.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40513.t1 | Q93Z17 | 78.9 | 128 | 20 | 1 | 43 | 163 | 46 | 173 | 7.8e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40513.t1 | G7K4R8 | 89.5 | 143 | 15 | 0 | 21 | 163 | 24 | 166 | 3.2e-63 | 250.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene40513 | 0.827211 | 1.77E-54 | -1.69E-46 |
| MS.gene049255 | MS.gene40513 | 0.800062 | 1.72E-48 | -1.69E-46 |
| MS.gene049341 | MS.gene40513 | 0.830354 | 3.08E-55 | -1.69E-46 |
| MS.gene049501 | MS.gene40513 | 0.824561 | 7.55E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene40513 | 0.822254 | 2.61E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene40513 | 0.85766 | 1.40E-62 | -1.69E-46 |
| MS.gene050442 | MS.gene40513 | 0.80196 | 7.03E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene40513 | 0.846554 | 2.02E-59 | -1.69E-46 |
| MS.gene050721 | MS.gene40513 | 0.847622 | 1.03E-59 | -1.69E-46 |
| MS.gene050724 | MS.gene40513 | 0.829543 | 4.85E-55 | -1.69E-46 |
| MS.gene050815 | MS.gene40513 | 0.820286 | 7.43E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene40513 | 0.807778 | 4.28E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene40513 | 0.831652 | 1.48E-55 | -1.69E-46 |
| MS.gene051328 | MS.gene40513 | 0.843759 | 1.15E-58 | -1.69E-46 |
| MS.gene05134 | MS.gene40513 | 0.80528 | 1.44E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene40513 | 0.826651 | 2.41E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene40513 | 0.806459 | 8.14E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene40513 | 0.805979 | 1.03E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene40513 | 0.816782 | 4.63E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene40513 | 0.801364 | 9.32E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene40513 | 0.808325 | 3.27E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene40513 | 0.846966 | 1.56E-59 | -1.69E-46 |
| MS.gene052020 | MS.gene40513 | 0.809453 | 1.88E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene40513 | 0.804104 | 2.53E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene40513 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene052858 | MS.gene40513 | 0.810889 | 9.21E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene40513 | 0.812225 | 4.72E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene40513 | 0.821701 | 3.51E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene40513 | 0.820175 | 7.88E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene40513 | 0.823638 | 1.24E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene40513 | 0.816585 | 5.13E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene40513 | 0.810103 | 1.36E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene40513 | 0.817077 | 3.98E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene40513 | 0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene40513 | 0.82689 | 2.12E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene40513 | 0.851548 | 8.26E-61 | -1.69E-46 |
| MS.gene055468 | MS.gene40513 | 0.832077 | 1.16E-55 | -1.69E-46 |
| MS.gene055512 | MS.gene40513 | 0.813983 | 1.94E-51 | -1.69E-46 |
| MS.gene055608 | MS.gene40513 | 0.812432 | 4.25E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene40513 | 0.800345 | 1.51E-48 | -1.69E-46 |
| MS.gene055778 | MS.gene40513 | 0.838225 | 3.26E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene40513 | 0.804399 | 2.20E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene40513 | 0.818924 | 1.52E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene40513 | -0.801064 | 1.07E-48 | -1.69E-46 |
| MS.gene056091 | MS.gene40513 | 0.809372 | 1.95E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene40513 | 0.809921 | 1.49E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene40513 | 0.804639 | 1.96E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene40513 | 0.806219 | 9.15E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene40513 | 0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene40513 | 0.828944 | 6.78E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene40513 | 0.801664 | 8.09E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene40513 | 0.812913 | 3.34E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene40513 | 0.841358 | 4.99E-58 | -1.69E-46 |
| MS.gene057693 | MS.gene40513 | 0.827419 | 1.58E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene40513 | 0.817937 | 2.55E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene40513 | 0.912178 | 2.62E-83 | -1.69E-46 |
| MS.gene058168 | MS.gene40513 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene40513 | 0.85811 | 1.03E-62 | -1.69E-46 |
| MS.gene058908 | MS.gene40513 | 0.80101 | 1.10E-48 | -1.69E-46 |
| MS.gene058911 | MS.gene40513 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene059249 | MS.gene40513 | 0.80955 | 1.79E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene40513 | 0.82247 | 2.33E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene40513 | 0.836852 | 7.34E-57 | -1.69E-46 |
| MS.gene060322 | MS.gene40513 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene40513 | 0.861575 | 9.32E-64 | -1.69E-46 |
| MS.gene060572 | MS.gene40513 | 0.809666 | 1.69E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene40513 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene40513 | 0.806522 | 7.90E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene40513 | 0.827292 | 1.70E-54 | -1.69E-46 |
| MS.gene060907 | MS.gene40513 | 0.822924 | 1.83E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40513.t1 | MTR_5g096490 | 96.923 | 130 | 4 | 0 | 34 | 163 | 4 | 133 | 3.05e-88 | 254 |
| MS.gene40513.t1 | MTR_5g007240 | 86.755 | 151 | 18 | 2 | 14 | 163 | 17 | 166 | 6.93e-81 | 236 |
| MS.gene40513.t1 | MTR_5g096490 | 86.755 | 151 | 18 | 2 | 14 | 163 | 17 | 166 | 6.93e-81 | 236 |
| MS.gene40513.t1 | MTR_4g051390 | 42.975 | 121 | 67 | 1 | 44 | 162 | 1 | 121 | 4.38e-31 | 108 |
| MS.gene40513.t1 | MTR_1779s0020 | 42.975 | 121 | 67 | 1 | 44 | 162 | 1 | 121 | 6.70e-30 | 105 |
| MS.gene40513.t1 | MTR_2g087550 | 41.667 | 120 | 68 | 1 | 45 | 162 | 2 | 121 | 4.40e-28 | 103 |
| MS.gene40513.t1 | MTR_0002s0780 | 41.739 | 115 | 64 | 1 | 51 | 162 | 135 | 249 | 4.42e-24 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40513.t1 | AT5G46160 | 78.030 | 132 | 22 | 1 | 39 | 163 | 41 | 172 | 6.31e-67 | 201 |
| MS.gene40513.t1 | AT5G46160 | 78.030 | 132 | 22 | 1 | 39 | 163 | 42 | 173 | 7.20e-67 | 201 |
| MS.gene40513.t1 | AT1G17560 | 60.131 | 153 | 32 | 3 | 39 | 162 | 43 | 195 | 4.06e-53 | 167 |
| MS.gene40513.t1 | AT1G17560 | 60.131 | 153 | 32 | 3 | 39 | 162 | 20 | 172 | 4.20e-53 | 166 |
| MS.gene40513.t1 | ATCG00780 | 44.628 | 121 | 65 | 1 | 44 | 162 | 1 | 121 | 1.40e-32 | 112 |
Find 41 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAGGTTGTGGACAATTC+TGG | 0.240087 | 5.3:-2103631 | MS.gene40513:CDS |
| GGACAATTCTGGAGCTAAAA+AGG | 0.321429 | 5.3:-2103620 | MS.gene40513:CDS |
| GACAAACAAGGGCAGCCTAT+TGG | 0.362318 | 5.3:-2103397 | MS.gene40513:CDS |
| ACAAACAAGGGCAGCCTATT+GGG | 0.366691 | 5.3:-2103396 | MS.gene40513:CDS |
| GTCAAGATCCTTACCTTAGC+TGG | 0.374088 | 5.3:-2103325 | MS.gene40513:CDS |
| GTGAAGGAAGCACATCCTAA+TGG | 0.397241 | 5.3:-2103532 | MS.gene40513:CDS |
| TGCCTCAACTCATGAGGAAC+TGG | 0.420523 | 5.3:+2103358 | None:intergenic |
| CCGAAAACTCTGGTCCCAAT+AGG | 0.444490 | 5.3:+2103382 | None:intergenic |
| CGCGCGTTGGCAGGGAAGAA+AGG | 0.457182 | 5.3:-2103586 | MS.gene40513:CDS |
| GGGAAGAAAGGAGCAAGATT+AGG | 0.462937 | 5.3:-2103574 | MS.gene40513:CDS |
| ATGTGCATACGCGCGTTGGC+AGG | 0.463329 | 5.3:-2103595 | MS.gene40513:CDS |
| CGTGTTTGACTTGTAAATAG+AGG | 0.479650 | 5.3:+2104125 | None:intergenic |
| TCCTAATGGAAAAGTGAAGA+AGG | 0.493277 | 5.3:-2103518 | MS.gene40513:CDS |
| CTGCCATCACACCTACCCTT+TGG | 0.494271 | 5.3:+2103457 | None:intergenic |
| TAGAGGGAGGGAGTGATTAG+TGG | 0.520080 | 5.3:+2104142 | None:intergenic |
| AACAGTCCTCATCTGTATGA+AGG | 0.520727 | 5.3:+2103654 | None:intergenic |
| ATGCCAAAGGGTAGGTGTGA+TGG | 0.533908 | 5.3:-2103460 | MS.gene40513:CDS |
| CAATATGCCCAGCTAAGGTA+AGG | 0.539065 | 5.3:+2103317 | None:intergenic |
| CATTGCTGCACGAACAACTA+CGG | 0.550383 | 5.3:+2103480 | None:intergenic |
| AGGAACTGGTCCGAAAACTC+TGG | 0.550755 | 5.3:+2103372 | None:intergenic |
| TCAAGATCCTTACCTTAGCT+GGG | 0.562147 | 5.3:-2103324 | MS.gene40513:CDS |
| CTATGCAATATGCCCAGCTA+AGG | 0.565511 | 5.3:+2103312 | None:intergenic |
| TGTTCGTGCAGCAATGCCAA+AGG | 0.568662 | 5.3:-2103473 | MS.gene40513:CDS |
| GTTAAAATGTCAACTTCCCC+AGG | 0.577318 | 5.3:-2104410 | MS.gene40513:intron |
| TGTGCATACGCGCGTTGGCA+GGG | 0.580036 | 5.3:-2103594 | MS.gene40513:CDS |
| GTGTTTGACTTGTAAATAGA+GGG | 0.580442 | 5.3:+2104126 | None:intergenic |
| GACCAGTTCCTCATGAGTTG+AGG | 0.580661 | 5.3:-2103360 | MS.gene40513:CDS |
| ACAGATGAGGACTGTTCTGA+AGG | 0.580846 | 5.3:-2103647 | MS.gene40513:CDS |
| TTGACTTGTAAATAGAGGGA+GGG | 0.582627 | 5.3:+2104130 | None:intergenic |
| GAGGACTGTTCTGAAGGTTG+TGG | 0.589490 | 5.3:-2103641 | MS.gene40513:CDS |
| GGTGATGTGCATACGCGCGT+TGG | 0.592616 | 5.3:-2103599 | MS.gene40513:CDS |
| GTTCGTGCAGCAATGCCAAA+GGG | 0.599925 | 5.3:-2103472 | MS.gene40513:CDS |
| CCTAATGGAAAAGTGAAGAA+GGG | 0.626002 | 5.3:-2103517 | MS.gene40513:CDS |
| TTCTTCTGCCTCAACTCATG+AGG | 0.632900 | 5.3:+2103352 | None:intergenic |
| TTTGACTTGTAAATAGAGGG+AGG | 0.634315 | 5.3:+2104129 | None:intergenic |
| GTGCAGCAATGCCAAAGGGT+AGG | 0.641762 | 5.3:-2103468 | MS.gene40513:CDS |
| GTTGTGCTTGTTGACAAACA+AGG | 0.656177 | 5.3:-2103409 | MS.gene40513:CDS |
| TATGATACAAGCATCAGTGA+AGG | 0.662607 | 5.3:-2103548 | MS.gene40513:CDS |
| AACGAACCTTCATACAGATG+AGG | 0.663831 | 5.3:-2103660 | MS.gene40513:CDS |
| TTGTGCTTGTTGACAAACAA+GGG | 0.669343 | 5.3:-2103408 | MS.gene40513:CDS |
| GGGTAGGTGTGATGGCAGTG+AGG | 0.701393 | 5.3:-2103452 | MS.gene40513:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAATATCTATTAAG+TGG | + | chr5.3:2103678-2103697 | None:intergenic | 10.0% |
| !! | AGCATAAGAAAATAATGTTA+AGG | + | chr5.3:2103883-2103902 | None:intergenic | 20.0% |
| !! | TAATATATGAAATTTCAGAG+TGG | + | chr5.3:2103541-2103560 | None:intergenic | 20.0% |
| !!! | CAAGAATTTTTATGTTGATA+AGG | - | chr5.3:2103641-2103660 | MS.gene40513:CDS | 20.0% |
| !!! | GTTTTAGTAAACTAACAATT+TGG | + | chr5.3:2103417-2103436 | None:intergenic | 20.0% |
| ! | GTAATAATGAAACTACAACA+TGG | + | chr5.3:2103439-2103458 | None:intergenic | 25.0% |
| ! | GTTGTAGTTTCATTATTACA+TGG | - | chr5.3:2103440-2103459 | MS.gene40513:CDS | 25.0% |
| !!! | AAACATTGATTCTATCCTTT+TGG | - | chr5.3:2103382-2103401 | MS.gene40513:CDS | 25.0% |
| AAAACAGTTATTCTCTTACC+TGG | + | chr5.3:2103350-2103369 | None:intergenic | 30.0% | |
| AAACAGTTATTCTCTTACCT+GGG | + | chr5.3:2103349-2103368 | None:intergenic | 30.0% | |
| AAGATTACCAATACTGTGTT+TGG | + | chr5.3:2103908-2103927 | None:intergenic | 30.0% | |
| TGTTGAAAAACCAAACTAGT+GGG | - | chr5.3:2103721-2103740 | MS.gene40513:intron | 30.0% | |
| ! | TATTTTTCTCAGGTACATGT+AGG | - | chr5.3:2103820-2103839 | MS.gene40513:intron | 30.0% |
| !! | GTGTTTGACTTGTAAATAGA+GGG | + | chr5.3:2103616-2103635 | None:intergenic | 30.0% |
| !!! | ACTGTTGTTTTCTACAATCT+AGG | + | chr5.3:2103934-2103953 | None:intergenic | 30.0% |
| !!! | ATGCAACAGTTATTTTTCTC+AGG | - | chr5.3:2103810-2103829 | MS.gene40513:intron | 30.0% |
| !!! | CATTTTAACTTCCGATGAAA+AGG | + | chr5.3:2103318-2103337 | None:intergenic | 30.0% |
| AACAGTTATTCTCTTACCTG+GGG | + | chr5.3:2103348-2103367 | None:intergenic | 35.0% | |
| CCTAATGGAAAAGTGAAGAA+GGG | - | chr5.3:2104222-2104241 | MS.gene40513:intron | 35.0% | |
| GTGTTGAAAAACCAAACTAG+TGG | - | chr5.3:2103720-2103739 | MS.gene40513:intron | 35.0% | |
| TATGATACAAGCATCAGTGA+AGG | - | chr5.3:2104191-2104210 | MS.gene40513:intron | 35.0% | |
| TCCTAATGGAAAAGTGAAGA+AGG | - | chr5.3:2104221-2104240 | MS.gene40513:intron | 35.0% | |
| TGTGTGTAAGAAACTAAGCA+TGG | + | chr5.3:2104009-2104028 | None:intergenic | 35.0% | |
| ! | AGACATTGTTTTCTTCAGGA+AGG | + | chr5.3:2104043-2104062 | None:intergenic | 35.0% |
| ! | AGGAAGACATTGTTTTCTTC+AGG | + | chr5.3:2104047-2104066 | None:intergenic | 35.0% |
| ! | TTGCCAATGCTCATGTTTTA+GGG | + | chr5.3:2103476-2103495 | None:intergenic | 35.0% |
| ! | TTGTGCTTGTTGACAAACAA+GGG | - | chr5.3:2104331-2104350 | MS.gene40513:intron | 35.0% |
| ! | TTTGCCAATGCTCATGTTTT+AGG | + | chr5.3:2103477-2103496 | None:intergenic | 35.0% |
| !! | CGTGTTTGACTTGTAAATAG+AGG | + | chr5.3:2103617-2103636 | None:intergenic | 35.0% |
| !! | TTGACTTGTAAATAGAGGGA+GGG | + | chr5.3:2103612-2103631 | None:intergenic | 35.0% |
| !! | TTTGACTTGTAAATAGAGGG+AGG | + | chr5.3:2103613-2103632 | None:intergenic | 35.0% |
| !!! | CATTGATTCTATCCTTTTGG+TGG | - | chr5.3:2103385-2103404 | MS.gene40513:CDS | 35.0% |
| AACAGTCCTCATCTGTATGA+AGG | + | chr5.3:2104088-2104107 | None:intergenic | 40.0% | |
| AACGAACCTTCATACAGATG+AGG | - | chr5.3:2104079-2104098 | MS.gene40513:intron | 40.0% | |
| ACATGTATCTTTGCACTGCA+TGG | + | chr5.3:2103964-2103983 | None:intergenic | 40.0% | |
| AGAGTGGTTGCAAAATGTAG+TGG | + | chr5.3:2103525-2103544 | None:intergenic | 40.0% | |
| ATGCTTGCCAAACACAGTAT+TGG | - | chr5.3:2103898-2103917 | MS.gene40513:intron | 40.0% | |
| ATTTGGACATCACCACCAAA+AGG | + | chr5.3:2103400-2103419 | None:intergenic | 40.0% | |
| GTTAAAATGTCAACTTCCCC+AGG | - | chr5.3:2103329-2103348 | MS.gene40513:CDS | 40.0% | |
| TACATGTAGGAATCAGTTGC+AGG | - | chr5.3:2103833-2103852 | MS.gene40513:intron | 40.0% | |
| TCAAGATCCTTACCTTAGCT+GGG | - | chr5.3:2104415-2104434 | MS.gene40513:CDS | 40.0% | |
| TTAATCCACCGAACAGAGAA+CGG | + | chr5.3:2103747-2103766 | None:intergenic | 40.0% | |
| ! | GTTGTGCTTGTTGACAAACA+AGG | - | chr5.3:2104330-2104349 | MS.gene40513:intron | 40.0% |
| !! | CCCTTCTTCACTTTTCCATT+AGG | + | chr5.3:2104225-2104244 | None:intergenic | 40.0% |
| !! | GGACAATTCTGGAGCTAAAA+AGG | - | chr5.3:2104119-2104138 | MS.gene40513:CDS | 40.0% |
| ACAAACAAGGGCAGCCTATT+GGG | - | chr5.3:2104343-2104362 | MS.gene40513:intron | 45.0% | |
| ACAGATGAGGACTGTTCTGA+AGG | - | chr5.3:2104092-2104111 | MS.gene40513:intron | 45.0% | |
| CAATATGCCCAGCTAAGGTA+AGG | + | chr5.3:2104425-2104444 | None:intergenic | 45.0% | |
| CATTGCTGCACGAACAACTA+CGG | + | chr5.3:2104262-2104281 | None:intergenic | 45.0% | |
| CTATGCAATATGCCCAGCTA+AGG | + | chr5.3:2104430-2104449 | None:intergenic | 45.0% | |
| CTGAAGGTTGTGGACAATTC+TGG | - | chr5.3:2104108-2104127 | MS.gene40513:CDS | 45.0% | |
| GCTCCCTAAAACATGAGCAT+TGG | - | chr5.3:2103470-2103489 | MS.gene40513:CDS | 45.0% | |
| GGGAAGAAAGGAGCAAGATT+AGG | - | chr5.3:2104165-2104184 | MS.gene40513:intron | 45.0% | |
| GGTTCGTTGTTGCTGCAAAA+AGG | + | chr5.3:2104067-2104086 | None:intergenic | 45.0% | |
| GTCAAGATCCTTACCTTAGC+TGG | - | chr5.3:2104414-2104433 | MS.gene40513:CDS | 45.0% | |
| GTGACGTGGTAAATAGACCA+GGG | + | chr5.3:2103780-2103799 | None:intergenic | 45.0% | |
| TGACGTGGTAAATAGACCAG+GGG | + | chr5.3:2103779-2103798 | None:intergenic | 45.0% | |
| TGTGACGTGGTAAATAGACC+AGG | + | chr5.3:2103781-2103800 | None:intergenic | 45.0% | |
| TTAGTGGCACAAGTGCAAAC+TGG | + | chr5.3:2103584-2103603 | None:intergenic | 45.0% | |
| TTCTTCTGCCTCAACTCATG+AGG | + | chr5.3:2104390-2104409 | None:intergenic | 45.0% | |
| ! | CCTATTGGGACCAGAGTTTT+CGG | - | chr5.3:2104357-2104376 | MS.gene40513:intron | 45.0% |
| ! | GTGAAGGAAGCACATCCTAA+TGG | - | chr5.3:2104207-2104226 | MS.gene40513:intron | 45.0% |
| AGGAACTGGTCCGAAAACTC+TGG | + | chr5.3:2104370-2104389 | None:intergenic | 50.0% | |
| ATGCCAAAGGGTAGGTGTGA+TGG | - | chr5.3:2104279-2104298 | MS.gene40513:intron | 50.0% | |
| CCGAAAACTCTGGTCCCAAT+AGG | + | chr5.3:2104360-2104379 | None:intergenic | 50.0% | |
| GACAAACAAGGGCAGCCTAT+TGG | - | chr5.3:2104342-2104361 | MS.gene40513:intron | 50.0% | |
| GACCAGTTCCTCATGAGTTG+AGG | - | chr5.3:2104379-2104398 | MS.gene40513:intron | 50.0% | |
| GCATGTCATCTCATGTGACG+TGG | + | chr5.3:2103794-2103813 | None:intergenic | 50.0% | |
| GGATTAAGCAACAGTTCCCC+TGG | - | chr5.3:2103760-2103779 | MS.gene40513:intron | 50.0% | |
| GTTCGTGCAGCAATGCCAAA+GGG | - | chr5.3:2104267-2104286 | MS.gene40513:intron | 50.0% | |
| TAGAGGGAGGGAGTGATTAG+TGG | + | chr5.3:2103600-2103619 | None:intergenic | 50.0% | |
| TGCCTCAACTCATGAGGAAC+TGG | + | chr5.3:2104384-2104403 | None:intergenic | 50.0% | |
| TGTTCGTGCAGCAATGCCAA+AGG | - | chr5.3:2104266-2104285 | MS.gene40513:intron | 50.0% | |
| !! | GAGGACTGTTCTGAAGGTTG+TGG | - | chr5.3:2104098-2104117 | MS.gene40513:intron | 50.0% |
| CAGAGAACGGCCCACTAGTT+TGG | + | chr5.3:2103734-2103753 | None:intergenic | 55.0% | |
| CTGCCATCACACCTACCCTT+TGG | + | chr5.3:2104285-2104304 | None:intergenic | 55.0% | |
| GTGCAGCAATGCCAAAGGGT+AGG | - | chr5.3:2104271-2104290 | MS.gene40513:intron | 55.0% | |
| ! | CTAGTGGGCCGTTCTCTGTT+CGG | - | chr5.3:2103736-2103755 | MS.gene40513:intron | 55.0% |
| GGGTAGGTGTGATGGCAGTG+AGG | - | chr5.3:2104287-2104306 | MS.gene40513:intron | 60.0% | |
| GGTGATGTGCATACGCGCGT+TGG | - | chr5.3:2104140-2104159 | MS.gene40513:CDS | 60.0% | |
| ! | ATGTGCATACGCGCGTTGGC+AGG | - | chr5.3:2104144-2104163 | MS.gene40513:CDS | 60.0% |
| ! | TGTGCATACGCGCGTTGGCA+GGG | - | chr5.3:2104145-2104164 | MS.gene40513:CDS | 60.0% |
| GTGGGCCGTTCTCTGTTCGG+TGG | - | chr5.3:2103739-2103758 | MS.gene40513:intron | 65.0% | |
| ! | CGCGCGTTGGCAGGGAAGAA+AGG | - | chr5.3:2104153-2104172 | MS.gene40513:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2103312 | 2104449 | 2103312 | ID=MS.gene40513 |
| chr5.3 | mRNA | 2103312 | 2104449 | 2103312 | ID=MS.gene40513.t1;Parent=MS.gene40513 |
| chr5.3 | exon | 2104411 | 2104449 | 2104411 | ID=MS.gene40513.t1.exon1;Parent=MS.gene40513.t1 |
| chr5.3 | CDS | 2104411 | 2104449 | 2104411 | ID=cds.MS.gene40513.t1;Parent=MS.gene40513.t1 |
| chr5.3 | exon | 2104099 | 2104176 | 2104099 | ID=MS.gene40513.t1.exon2;Parent=MS.gene40513.t1 |
| chr5.3 | CDS | 2104099 | 2104176 | 2104099 | ID=cds.MS.gene40513.t1;Parent=MS.gene40513.t1 |
| chr5.3 | exon | 2103312 | 2103686 | 2103312 | ID=MS.gene40513.t1.exon3;Parent=MS.gene40513.t1 |
| chr5.3 | CDS | 2103312 | 2103686 | 2103312 | ID=cds.MS.gene40513.t1;Parent=MS.gene40513.t1 |
| Gene Sequence |
| Protein sequence |
