Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47711.t1 | AET00229.2 | 83.4 | 368 | 54 | 3 | 15 | 381 | 56 | 417 | 1.70E-77 | 300.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47711.t1 | Q94CK9 | 72.7 | 66 | 18 | 0 | 316 | 381 | 220 | 285 | 4.6e-23 | 110.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47711.t1 | G7K357 | 83.4 | 368 | 54 | 3 | 15 | 381 | 56 | 417 | 1.2e-77 | 300.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47711.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene47711 | -0.831515 | 1.60E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene47711 | -0.833464 | 5.25E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene47711 | -0.807204 | 5.67E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene47711 | -0.803328 | 3.67E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene47711 | -0.857376 | 1.70E-62 | -1.69E-46 |
| MS.gene050163 | MS.gene47711 | -0.807798 | 4.24E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene47711 | -0.826796 | 2.23E-54 | -1.69E-46 |
| MS.gene050170 | MS.gene47711 | -0.822203 | 2.69E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene47711 | -0.824901 | 6.28E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene47711 | -0.811156 | 8.06E-51 | -1.69E-46 |
| MS.gene050338 | MS.gene47711 | 0.834407 | 3.05E-56 | -1.69E-46 |
| MS.gene050444 | MS.gene47711 | -0.83675 | 7.79E-57 | -1.69E-46 |
| MS.gene050496 | MS.gene47711 | -0.811396 | 7.15E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene47711 | -0.812047 | 5.16E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene47711 | -0.80172 | 7.88E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene47711 | -0.841989 | 3.40E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene47711 | -0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene47711 | -0.80644 | 8.22E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene47711 | -0.846263 | 2.42E-59 | -1.69E-46 |
| MS.gene05081 | MS.gene47711 | -0.81045 | 1.15E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene47711 | -0.813934 | 1.99E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene47711 | -0.809531 | 1.81E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene47711 | -0.844989 | 5.37E-59 | -1.69E-46 |
| MS.gene051138 | MS.gene47711 | 0.814639 | 1.39E-51 | -1.69E-46 |
| MS.gene051317 | MS.gene47711 | -0.845205 | 4.70E-59 | -1.69E-46 |
| MS.gene051617 | MS.gene47711 | -0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene47711 | 0.830781 | 2.42E-55 | -1.69E-46 |
| MS.gene051749 | MS.gene47711 | 0.80542 | 1.35E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene47711 | -0.831469 | 1.64E-55 | -1.69E-46 |
| MS.gene052129 | MS.gene47711 | 0.814811 | 1.27E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene47711 | -0.812173 | 4.84E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene47711 | -0.816416 | 5.59E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene47711 | -0.809009 | 2.34E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene47711 | -0.826855 | 2.16E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene47711 | -0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene47711 | -0.801691 | 7.99E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene47711 | 0.807634 | 4.59E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene47711 | -0.81295 | 3.28E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene47711 | 0.821343 | 4.25E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene47711 | -0.801202 | 1.01E-48 | -1.69E-46 |
| MS.gene055206 | MS.gene47711 | -0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene47711 | -0.827447 | 1.56E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene47711 | -0.846497 | 2.09E-59 | -1.69E-46 |
| MS.gene055748 | MS.gene47711 | -0.853212 | 2.77E-61 | -1.69E-46 |
| MS.gene055750 | MS.gene47711 | -0.828007 | 1.14E-54 | -1.69E-46 |
| MS.gene055751 | MS.gene47711 | -0.854442 | 1.23E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene47711 | -0.861831 | 7.78E-64 | -1.69E-46 |
| MS.gene055941 | MS.gene47711 | -0.800125 | 1.67E-48 | -1.69E-46 |
| MS.gene056283 | MS.gene47711 | -0.817633 | 2.98E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene47711 | -0.829598 | 4.71E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene47711 | -0.83376 | 4.43E-56 | -1.69E-46 |
| MS.gene056618 | MS.gene47711 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene47711 | -0.801687 | 8.00E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene47711 | -0.830654 | 2.60E-55 | -1.69E-46 |
| MS.gene056856 | MS.gene47711 | 0.812941 | 3.29E-51 | -1.69E-46 |
| MS.gene056857 | MS.gene47711 | 0.804271 | 2.34E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene47711 | -0.808486 | 3.03E-50 | -1.69E-46 |
| MS.gene05753 | MS.gene47711 | -0.804333 | 2.27E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene47711 | -0.8178 | 2.73E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene47711 | 0.822074 | 2.88E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene47711 | -0.816957 | 4.23E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene47711 | -0.815184 | 1.05E-51 | -1.69E-46 |
| MS.gene058544 | MS.gene47711 | -0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene47711 | -0.816276 | 6.01E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene47711 | -0.836424 | 9.44E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene47711 | -0.80049 | 1.41E-48 | -1.69E-46 |
| MS.gene059023 | MS.gene47711 | -0.849454 | 3.20E-60 | -1.69E-46 |
| MS.gene059079 | MS.gene47711 | -0.832567 | 8.78E-56 | -1.69E-46 |
| MS.gene059526 | MS.gene47711 | 0.828958 | 6.73E-55 | -1.69E-46 |
| MS.gene059667 | MS.gene47711 | -0.801138 | 1.04E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene47711 | -0.8278 | 1.28E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene47711 | -0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene47711 | -0.831627 | 1.50E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene47711 | -0.810777 | 9.74E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene47711 | -0.853323 | 2.58E-61 | -1.69E-46 |
| MS.gene060823 | MS.gene47711 | 0.828752 | 7.55E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene47711 | -0.852978 | 3.24E-61 | -1.69E-46 |
| MS.gene061044 | MS.gene47711 | 0.809724 | 1.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47711.t1 | MTR_5g089750 | 91.029 | 379 | 27 | 4 | 3 | 380 | 44 | 416 | 0.0 | 590 |
| MS.gene47711.t1 | MTR_3g014660 | 42.025 | 326 | 147 | 9 | 98 | 416 | 39 | 329 | 3.91e-68 | 220 |
| MS.gene47711.t1 | MTR_8g039110 | 38.272 | 324 | 159 | 10 | 83 | 389 | 8 | 307 | 1.62e-61 | 202 |
| MS.gene47711.t1 | MTR_8g076620 | 45.213 | 188 | 71 | 5 | 183 | 367 | 94 | 252 | 1.13e-42 | 153 |
| MS.gene47711.t1 | MTR_5g021130 | 51.829 | 164 | 70 | 4 | 206 | 365 | 93 | 251 | 2.77e-40 | 146 |
| MS.gene47711.t1 | MTR_3g112510 | 41.081 | 185 | 91 | 4 | 203 | 385 | 76 | 244 | 5.57e-34 | 129 |
| MS.gene47711.t1 | MTR_4g071110 | 39.216 | 153 | 61 | 3 | 213 | 365 | 17 | 137 | 2.45e-27 | 110 |
| MS.gene47711.t1 | MTR_0363s0040 | 33.649 | 211 | 110 | 7 | 83 | 287 | 8 | 194 | 1.06e-26 | 107 |
| MS.gene47711.t1 | MTR_1g023230 | 86.667 | 45 | 6 | 0 | 213 | 257 | 122 | 166 | 2.95e-20 | 90.1 |
| MS.gene47711.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 215 | 247 | 44 | 76 | 5.84e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47711.t1 | AT5G12330 | 48.252 | 429 | 148 | 19 | 15 | 411 | 9 | 395 | 4.99e-95 | 291 |
| MS.gene47711.t1 | AT5G12330 | 48.378 | 339 | 123 | 12 | 86 | 411 | 9 | 308 | 1.70e-79 | 249 |
| MS.gene47711.t1 | AT5G12330 | 48.378 | 339 | 123 | 12 | 86 | 411 | 9 | 308 | 1.70e-79 | 249 |
| MS.gene47711.t1 | AT5G66350 | 50.000 | 158 | 65 | 3 | 213 | 369 | 120 | 264 | 7.32e-44 | 156 |
| MS.gene47711.t1 | AT5G66350 | 50.000 | 158 | 65 | 3 | 213 | 369 | 120 | 264 | 1.15e-43 | 155 |
| MS.gene47711.t1 | AT5G66350 | 50.000 | 158 | 65 | 3 | 213 | 369 | 120 | 264 | 1.31e-43 | 155 |
| MS.gene47711.t1 | AT1G75520 | 41.176 | 238 | 93 | 10 | 194 | 407 | 110 | 324 | 8.48e-43 | 154 |
| MS.gene47711.t1 | AT1G19790 | 47.619 | 168 | 82 | 3 | 200 | 365 | 106 | 269 | 3.35e-41 | 149 |
| MS.gene47711.t1 | AT1G19790 | 47.619 | 168 | 82 | 3 | 200 | 365 | 106 | 269 | 3.35e-41 | 149 |
| MS.gene47711.t1 | AT3G51060 | 40.517 | 232 | 99 | 7 | 146 | 363 | 76 | 282 | 5.11e-41 | 150 |
| MS.gene47711.t1 | AT4G36260 | 42.797 | 236 | 104 | 7 | 137 | 367 | 37 | 246 | 5.34e-41 | 148 |
| MS.gene47711.t1 | AT2G18120 | 42.541 | 181 | 82 | 2 | 191 | 371 | 50 | 208 | 1.41e-38 | 139 |
| MS.gene47711.t1 | AT2G18120 | 42.541 | 181 | 84 | 2 | 191 | 371 | 50 | 210 | 3.04e-38 | 138 |
| MS.gene47711.t1 | AT3G54430 | 42.353 | 170 | 73 | 3 | 209 | 377 | 37 | 182 | 5.61e-37 | 134 |
| MS.gene47711.t1 | AT2G21400 | 40.881 | 159 | 71 | 2 | 213 | 371 | 10 | 145 | 2.93e-34 | 126 |
| MS.gene47711.t1 | AT2G21400 | 40.881 | 159 | 71 | 2 | 213 | 371 | 9 | 144 | 3.03e-34 | 126 |
| MS.gene47711.t1 | AT2G21400 | 40.000 | 160 | 56 | 2 | 213 | 371 | 10 | 130 | 3.95e-33 | 123 |
| MS.gene47711.t1 | AT2G21400 | 40.000 | 160 | 56 | 2 | 213 | 371 | 9 | 129 | 4.00e-33 | 123 |
| MS.gene47711.t1 | AT5G12330 | 45.228 | 241 | 82 | 9 | 86 | 311 | 9 | 214 | 3.93e-32 | 122 |
| MS.gene47711.t1 | AT5G33210 | 72.222 | 54 | 15 | 0 | 211 | 264 | 15 | 68 | 4.69e-21 | 88.2 |
| MS.gene47711.t1 | AT5G33210 | 72.222 | 54 | 15 | 0 | 211 | 264 | 50 | 103 | 1.24e-20 | 89.0 |
Find 126 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATACAAGTCCAACAAATT+TGG | 0.195666 | 5.3:-72325489 | MS.gene47711:CDS |
| CATGGTACTGGTGGGTTAAC+TGG | 0.215140 | 5.3:-72325464 | MS.gene47711:CDS |
| TCATCTAGGTCCATTAATTA+TGG | 0.227585 | 5.3:-72325824 | MS.gene47711:CDS |
| AACCTTTCTGAACTTCATTT+AGG | 0.241697 | 5.3:-72324338 | MS.gene47711:CDS |
| AGGAGATTGCCTTCAGATTC+AGG | 0.251476 | 5.3:-72325989 | MS.gene47711:CDS |
| GGTGGAAGCTCCGGCGTTTC+CGG | 0.252237 | 5.3:+72325871 | None:intergenic |
| GGTTCTAGTGGTTCAACTTC+TGG | 0.271027 | 5.3:-72325233 | MS.gene47711:CDS |
| CCGCCACCGCTCTCGGTGTC+GGG | 0.292941 | 5.3:-72325694 | MS.gene47711:CDS |
| TTACTTGGAGGTTCAGCTTA+TGG | 0.298507 | 5.3:-72324197 | MS.gene47711:CDS |
| ACCAACAAGGAATTCAGTTT+TGG | 0.307252 | 5.3:-72325607 | MS.gene47711:CDS |
| TGATCATGGTGTTGAGAATA+GGG | 0.324275 | 5.3:-72324372 | MS.gene47711:CDS |
| CATCTCAGGTCCATAATTAA+TGG | 0.328906 | 5.3:+72325814 | None:intergenic |
| AAACCGAGTGAAAGATCTTC+TGG | 0.334650 | 5.3:+72325911 | None:intergenic |
| AGCTCCGGCGTTTCCGGCGG+TGG | 0.340870 | 5.3:+72325877 | None:intergenic |
| ACTGGTGGGTTAACTGGTTC+TGG | 0.346294 | 5.3:-72325458 | MS.gene47711:CDS |
| GCCAAAACTGAATTCCTTGT+TGG | 0.364262 | 5.3:+72325606 | None:intergenic |
| AGTGGTGGTGGAGGGTTACT+TGG | 0.368806 | 5.3:-72324212 | MS.gene47711:CDS |
| ATGATCATGGTGTTGAGAAT+AGG | 0.379627 | 5.3:-72324373 | MS.gene47711:CDS |
| CTACTCATGTTAAGAGTACT+TGG | 0.387799 | 5.3:-72325322 | MS.gene47711:CDS |
| AGTCCAACAAATTTGGTTCA+TGG | 0.393800 | 5.3:-72325482 | MS.gene47711:CDS |
| TGAGAATTAACAAACCTTGA+TGG | 0.401434 | 5.3:+72325117 | None:intergenic |
| GCGACAACGACGGTGGTTGC+TGG | 0.403885 | 5.3:-72325260 | MS.gene47711:CDS |
| CCCGACACCGAGAGCGGTGG+CGG | 0.404701 | 5.3:+72325694 | None:intergenic |
| AGAAGGATTGTAGTAATAGA+AGG | 0.407133 | 5.3:-72325382 | MS.gene47711:CDS |
| GAGGTAGTATCAAAGCTTCT+AGG | 0.414831 | 5.3:+72325143 | None:intergenic |
| CTTAACCCCGCCACCGCTCT+CGG | 0.417771 | 5.3:-72325701 | MS.gene47711:CDS |
| GTACCATGAACCAAATTTGT+TGG | 0.418091 | 5.3:+72325479 | None:intergenic |
| CCCGCCACCGCTCTCGGTGT+CGG | 0.421375 | 5.3:-72325695 | MS.gene47711:CDS |
| CTTTCACTCGGTTTCAATGC+GGG | 0.422098 | 5.3:-72325902 | MS.gene47711:CDS |
| TACTACAATCCTTCTTCGCT+TGG | 0.423666 | 5.3:+72325390 | None:intergenic |
| ACAAATTTGGTTCATGGTAC+TGG | 0.423871 | 5.3:-72325476 | MS.gene47711:CDS |
| CATTTAGGTGGTGGTGGTGG+TGG | 0.424372 | 5.3:-72324323 | MS.gene47711:CDS |
| GGTGGTGGTGGTAATAATAA+TGG | 0.432992 | 5.3:-72324311 | MS.gene47711:CDS |
| GGTGGGTCCGGTGGAAGCTC+CGG | 0.434590 | 5.3:+72325862 | None:intergenic |
| TTCAATGCGGGTCCCACCGC+CGG | 0.436323 | 5.3:-72325890 | MS.gene47711:CDS |
| GCAGCTTCAAGTGGTGGTGG+AGG | 0.442810 | 5.3:-72324221 | MS.gene47711:CDS |
| AATGGCGGTGCTAATAGAAA+TGG | 0.444064 | 5.3:-72324293 | MS.gene47711:CDS |
| GATTGTTATGGTGGTGGTGG+TGG | 0.451027 | 5.3:+72325756 | None:intergenic |
| ATATAATCCGGTGGTGGGTC+CGG | 0.460177 | 5.3:+72325850 | None:intergenic |
| TGTTGTTCCTCCACCACTAC+TGG | 0.460746 | 5.3:+72325433 | None:intergenic |
| TCTGAACTTCATTTAGGTGG+TGG | 0.463166 | 5.3:-72324332 | MS.gene47711:CDS |
| CTTCATTTAGGTGGTGGTGG+TGG | 0.465476 | 5.3:-72324326 | MS.gene47711:CDS |
| CATTAATTATGGACCTGAGA+TGG | 0.472294 | 5.3:-72325813 | MS.gene47711:CDS |
| AAGATGATGAGAGAAGAAAA+TGG | 0.473083 | 5.3:-72326501 | MS.gene47711:intron |
| GGTGGTGGAGGGTTACTTGG+AGG | 0.474597 | 5.3:-72324209 | MS.gene47711:CDS |
| GATACTACCTCTAGCCATCA+AGG | 0.481688 | 5.3:-72325131 | MS.gene47711:intron |
| CCGGATTATATAATTCATCT+AGG | 0.484439 | 5.3:-72325838 | MS.gene47711:CDS |
| GTTTGTGAAGCAATAAGTCT+AGG | 0.489243 | 5.3:+72325200 | None:intergenic |
| GTCTTCTTCATCACCAATGA+TGG | 0.489923 | 5.3:-72324267 | MS.gene47711:CDS |
| GGTTTCAAAGATTCTATGCC+GGG | 0.497066 | 5.3:-72324518 | MS.gene47711:CDS |
| TTGTGGAAACCAAGCGAAGA+AGG | 0.497994 | 5.3:-72325399 | MS.gene47711:CDS |
| GGGTACCGGCTGCTAGAAGA+AGG | 0.498642 | 5.3:-72325301 | MS.gene47711:CDS |
| CAAGTACTCTTAACATGAGT+AGG | 0.499272 | 5.3:+72325323 | None:intergenic |
| TCATGAGAAGGATCCATCAT+TGG | 0.499688 | 5.3:+72324254 | None:intergenic |
| GAGCTGCTTCATGATTGTTA+TGG | 0.501220 | 5.3:+72325744 | None:intergenic |
| AAATGAAGTTCAGAAAGGTT+AGG | 0.504881 | 5.3:+72324341 | None:intergenic |
| GTTGCTGGTGGTGGTTCTAG+TGG | 0.506006 | 5.3:-72325245 | MS.gene47711:CDS |
| GAACTTCATTTAGGTGGTGG+TGG | 0.506112 | 5.3:-72324329 | MS.gene47711:CDS |
| CTTCATGATTGTTATGGTGG+TGG | 0.507878 | 5.3:+72325750 | None:intergenic |
| CCGACACCGAGAGCGGTGGC+GGG | 0.513284 | 5.3:+72325695 | None:intergenic |
| CCTAGATGAATTATATAATC+CGG | 0.516389 | 5.3:+72325838 | None:intergenic |
| CATGATTGTTATGGTGGTGG+TGG | 0.519577 | 5.3:+72325753 | None:intergenic |
| GGTCCCACCGCCGGAAACGC+CGG | 0.524097 | 5.3:-72325881 | MS.gene47711:CDS |
| GCTCCGGCGTTTCCGGCGGT+GGG | 0.525360 | 5.3:+72325878 | None:intergenic |
| ACGACGGTGGTTGCTGGTGG+TGG | 0.527037 | 5.3:-72325254 | MS.gene47711:CDS |
| TGAATTATATAATCCGGTGG+TGG | 0.528238 | 5.3:+72325844 | None:intergenic |
| TTCTGGAGCAGCAGCACGAA+GGG | 0.528350 | 5.3:+72325928 | None:intergenic |
| ATTAATTATGGACCTGAGAT+GGG | 0.532955 | 5.3:-72325812 | MS.gene47711:CDS |
| CTTTCTGAACTTCATTTAGG+TGG | 0.534449 | 5.3:-72324335 | MS.gene47711:CDS |
| CATGGAGAAGCTGTGAGTAA+AGG | 0.534475 | 5.3:+72325665 | None:intergenic |
| CGTTCCCTTCTTCTAGCAGC+CGG | 0.537437 | 5.3:+72325296 | None:intergenic |
| GCAGCAGCTTCAAGTGGTGG+TGG | 0.540984 | 5.3:-72324224 | MS.gene47711:CDS |
| ACTGGTTCTGGTACCAGTAG+TGG | 0.546183 | 5.3:-72325446 | MS.gene47711:CDS |
| GCTTCCACCGGACCCACCAC+CGG | 0.548718 | 5.3:-72325857 | MS.gene47711:CDS |
| AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5.3:-72325356 | MS.gene47711:CDS |
| AGGTTTCAAAGATTCTATGC+CGG | 0.555014 | 5.3:-72324519 | MS.gene47711:CDS |
| AATTTGGTTCATGGTACTGG+TGG | 0.555469 | 5.3:-72325473 | MS.gene47711:CDS |
| ACAACAAACATACCCATCTC+AGG | 0.556410 | 5.3:+72325800 | None:intergenic |
| ACAACAACGTGTCAAGATTG+TGG | 0.558898 | 5.3:-72325416 | MS.gene47711:CDS |
| TGTTAAGAGTACTTGGGTAC+CGG | 0.559268 | 5.3:-72325315 | MS.gene47711:CDS |
| CACCTAAATGAAGTTCAGAA+AGG | 0.561618 | 5.3:+72324336 | None:intergenic |
| CTGCTTCATGATTGTTATGG+TGG | 0.564872 | 5.3:+72325747 | None:intergenic |
| GCTCCAGAAGATCTTTCACT+CGG | 0.567750 | 5.3:-72325914 | MS.gene47711:CDS |
| GAATTATATAATCCGGTGGT+GGG | 0.570532 | 5.3:+72325845 | None:intergenic |
| CGCCACCGCTCTCGGTGTCG+GGG | 0.570886 | 5.3:-72325693 | MS.gene47711:CDS |
| AGCAACCACCGTCGTTGTCG+CGG | 0.571590 | 5.3:+72325262 | None:intergenic |
| TATCAAGCTGTAGTGAAGAT+TGG | 0.579339 | 5.3:-72324422 | MS.gene47711:CDS |
| ATATAGTTGTGGCTACTACA+AGG | 0.581940 | 5.3:-72326009 | MS.gene47711:intron |
| TTCTTCGACCGCGACAACGA+CGG | 0.583043 | 5.3:-72325270 | MS.gene47711:CDS |
| GGAAACGCCGGAGCTTCCAC+CGG | 0.586967 | 5.3:-72325869 | MS.gene47711:CDS |
| TAATCCGGTGGTGGGTCCGG+TGG | 0.587770 | 5.3:+72325853 | None:intergenic |
| GCCGGGTCAAGTACGTGCAC+CGG | 0.588438 | 5.3:-72324501 | MS.gene47711:CDS |
| AAAGAAAACCTTTGAAAACA+TGG | 0.590040 | 5.3:+72324396 | None:intergenic |
| CTAACACACTTGAATAGAGC+CGG | 0.591611 | 5.3:+72324482 | None:intergenic |
| TCTGGTACCAGTAGTGGTGG+AGG | 0.592565 | 5.3:-72325440 | MS.gene47711:CDS |
| CGACACCGAGAGCGGTGGCG+GGG | 0.592680 | 5.3:+72325696 | None:intergenic |
| ATTTGGTTCATGGTACTGGT+GGG | 0.594801 | 5.3:-72325472 | MS.gene47711:CDS |
| GGAAGCTCCGGCGTTTCCGG+CGG | 0.598478 | 5.3:+72325874 | None:intergenic |
| AGTATCAAAGCTTCTAGGAG+GGG | 0.599007 | 5.3:+72325148 | None:intergenic |
| AAGTACTCTTAACATGAGTA+GGG | 0.604249 | 5.3:+72325324 | None:intergenic |
| CAAGCTGTAGTGAAGATTGG+TGG | 0.605202 | 5.3:-72324419 | MS.gene47711:CDS |
| CAGCTTCAAGTGGTGGTGGA+GGG | 0.610373 | 5.3:-72324220 | MS.gene47711:CDS |
| GCCGGTGCACGTACTTGACC+CGG | 0.610717 | 5.3:+72324500 | None:intergenic |
| TATGCAGCAGCTTCAAGTGG+TGG | 0.610824 | 5.3:-72324227 | MS.gene47711:CDS |
| GTAGTATCAAAGCTTCTAGG+AGG | 0.611169 | 5.3:+72325146 | None:intergenic |
| GCAAAAGCTCCTGAATCTGA+AGG | 0.612169 | 5.3:+72325980 | None:intergenic |
| TAGTATCAAAGCTTCTAGGA+GGG | 0.613507 | 5.3:+72325147 | None:intergenic |
| GGTTCTGGTACCAGTAGTGG+TGG | 0.613955 | 5.3:-72325443 | MS.gene47711:CDS |
| AGAGTGACATCAGTGGATGA+TGG | 0.614276 | 5.3:-72324461 | MS.gene47711:CDS |
| TAACAAACCTTGATGGCTAG+AGG | 0.619709 | 5.3:+72325124 | None:intergenic |
| TTCGACCGCGACAACGACGG+TGG | 0.620852 | 5.3:-72325267 | MS.gene47711:CDS |
| CTTCTGGAGCAGCAGCACGA+AGG | 0.625376 | 5.3:+72325927 | None:intergenic |
| TGGTGGTGATGAAAAGAAGA+TGG | 0.632371 | 5.3:+72325773 | None:intergenic |
| TACTCATGTTAAGAGTACTT+GGG | 0.637418 | 5.3:-72325321 | MS.gene47711:CDS |
| GCTGCATAAACATCATGAGA+AGG | 0.637740 | 5.3:+72324242 | None:intergenic |
| GGTACCGGCTGCTAGAAGAA+GGG | 0.655941 | 5.3:-72325300 | MS.gene47711:CDS |
| AACCCCGACACCGAGAGCGG+TGG | 0.656167 | 5.3:+72325691 | None:intergenic |
| GTGGCGGGGTTAAGAGAGTG+AGG | 0.668996 | 5.3:+72325710 | None:intergenic |
| ACAACGACGGTGGTTGCTGG+TGG | 0.669044 | 5.3:-72325257 | MS.gene47711:CDS |
| TCTTTCACTCGGTTTCAATG+CGG | 0.669874 | 5.3:-72325903 | MS.gene47711:CDS |
| GTTTATGCAGCAGCTTCAAG+TGG | 0.670690 | 5.3:-72324230 | MS.gene47711:CDS |
| AGATGAATTATATAATCCGG+TGG | 0.675126 | 5.3:+72325841 | None:intergenic |
| TATAACCCCGACACCGAGAG+CGG | 0.681070 | 5.3:+72325688 | None:intergenic |
| GGTGGTGGTAATAATAATGG+CGG | 0.700948 | 5.3:-72324308 | MS.gene47711:CDS |
| GTGTGTTAGAGTGACATCAG+TGG | 0.704487 | 5.3:-72324468 | MS.gene47711:CDS |
| AACAATAGAAGAAACCAACA+AGG | 0.735803 | 5.3:-72325620 | MS.gene47711:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGTTAGTTTAATTTTTT+GGG | - | chr5.3:72326095-72326114 | MS.gene47711:intron | 10.0% |
| !! | AACCTAAAATTATATTATGA+AGG | + | chr5.3:72325625-72325644 | None:intergenic | 15.0% |
| !! | TAAAAATTAGTTAAACTAGA+TGG | + | chr5.3:72325883-72325902 | None:intergenic | 15.0% |
| !! | TAGAAAAATAGAAATAGAAA+AGG | - | chr5.3:72324235-72324254 | MS.gene47711:CDS | 15.0% |
| !!! | CTTTAGTTAGTTTAATTTTT+TGG | - | chr5.3:72326094-72326113 | MS.gene47711:intron | 15.0% |
| !!! | TTCCTTCATAATATAATTTT+AGG | - | chr5.3:72325620-72325639 | MS.gene47711:CDS | 15.0% |
| !! | AAATAAAAATAGTGCAAGTT+TGG | - | chr5.3:72325662-72325681 | MS.gene47711:CDS | 20.0% |
| !! | ATATATGTATGTATGTAATG+TGG | + | chr5.3:72324612-72324631 | None:intergenic | 20.0% |
| !! | TATATGTATGTATGTAATGT+GGG | + | chr5.3:72324611-72324630 | None:intergenic | 20.0% |
| !!! | ACTATATGTTTTTTGATGTA+TGG | + | chr5.3:72324678-72324697 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATAAAATCACAA+TGG | - | chr5.3:72325735-72325754 | MS.gene47711:CDS | 20.0% |
| ! | ATATGTATGTATGTAATGTG+GGG | + | chr5.3:72324610-72324629 | None:intergenic | 25.0% |
| ! | CACTATTTGAAAAAACAACA+AGG | - | chr5.3:72325173-72325192 | MS.gene47711:CDS | 25.0% |
| ! | CATCAAAAAACATATAGTTG+TGG | - | chr5.3:72324680-72324699 | MS.gene47711:intron | 25.0% |
| ! | CCTAGATGAATTATATAATC+CGG | + | chr5.3:72324865-72324884 | None:intergenic | 25.0% |
| ! | TAATACAAGTCCAACAAATT+TGG | - | chr5.3:72325211-72325230 | MS.gene47711:CDS | 25.0% |
| !! | AAAGAAAACCTTTGAAAACA+TGG | + | chr5.3:72326307-72326326 | None:intergenic | 25.0% |
| !! | AAAGGTTTTCTTTATGATCA+TGG | - | chr5.3:72326314-72326333 | MS.gene47711:intron | 25.0% |
| !!! | ATGTTTTCATTTTCAAGACA+TGG | + | chr5.3:72325056-72325075 | None:intergenic | 25.0% |
| !!! | ATTGTTTCTGTTTATAAGTG+TGG | + | chr5.3:72324531-72324550 | None:intergenic | 25.0% |
| !!! | TTTTTCAAATAGTGTGAATG+TGG | + | chr5.3:72325167-72325186 | None:intergenic | 25.0% |
| AAATGAAGTTCAGAAAGGTT+AGG | + | chr5.3:72326362-72326381 | None:intergenic | 30.0% | |
| AACAATAGAAGAAACCAACA+AGG | - | chr5.3:72325080-72325099 | MS.gene47711:intron | 30.0% | |
| AACCTTTCTGAACTTCATTT+AGG | - | chr5.3:72326362-72326381 | MS.gene47711:intron | 30.0% | |
| AACTATAAACTCTGCACAAT+TGG | + | chr5.3:72325768-72325787 | None:intergenic | 30.0% | |
| AAGATGATGAGAGAAGAAAA+TGG | - | chr5.3:72324199-72324218 | MS.gene47711:CDS | 30.0% | |
| AAGTACTCTTAACATGAGTA+GGG | + | chr5.3:72325379-72325398 | None:intergenic | 30.0% | |
| AGAAGGATTGTAGTAATAGA+AGG | - | chr5.3:72325318-72325337 | MS.gene47711:CDS | 30.0% | |
| AGATGAATTATATAATCCGG+TGG | + | chr5.3:72324862-72324881 | None:intergenic | 30.0% | |
| ATTAATTATGGACCTGAGAT+GGG | - | chr5.3:72324888-72324907 | MS.gene47711:intron | 30.0% | |
| CCGGATTATATAATTCATCT+AGG | - | chr5.3:72324862-72324881 | MS.gene47711:intron | 30.0% | |
| GTAGCTAGTGAGAAAATTAA+TGG | + | chr5.3:72325829-72325848 | None:intergenic | 30.0% | |
| TACTACTACTACTGTCAATT+TGG | + | chr5.3:72324392-72324411 | None:intergenic | 30.0% | |
| TCATCTAGGTCCATTAATTA+TGG | - | chr5.3:72324876-72324895 | MS.gene47711:intron | 30.0% | |
| TGAGAATTAACAAACCTTGA+TGG | + | chr5.3:72325586-72325605 | None:intergenic | 30.0% | |
| ! | ATTTTCTCACTAGCTACATA+AGG | - | chr5.3:72325832-72325851 | MS.gene47711:CDS | 30.0% |
| ! | TAGATGGTTGATCTTTTCAT+TGG | + | chr5.3:72325867-72325886 | None:intergenic | 30.0% |
| !! | AGAAAATTAATGGACTAGTG+TGG | + | chr5.3:72325819-72325838 | None:intergenic | 30.0% |
| !! | AGAACTTGTTGTAAAAGTAG+AGG | - | chr5.3:72325344-72325363 | MS.gene47711:CDS | 30.0% |
| !! | GTTGTTTTCTGATGATTTTC+TGG | + | chr5.3:72324461-72324480 | None:intergenic | 30.0% |
| !! | TACTCATGTTAAGAGTACTT+GGG | - | chr5.3:72325379-72325398 | MS.gene47711:CDS | 30.0% |
| !!! | TGAAGAGTTGTGTTTTGATT+TGG | - | chr5.3:72326136-72326155 | MS.gene47711:intron | 30.0% |
| AGGTTTCAAAGATTCTATGC+CGG | - | chr5.3:72326181-72326200 | MS.gene47711:intron | 35.0% | |
| ATATAGTTGTGGCTACTACA+AGG | - | chr5.3:72324691-72324710 | MS.gene47711:intron | 35.0% | |
| CAAGTACTCTTAACATGAGT+AGG | + | chr5.3:72325380-72325399 | None:intergenic | 35.0% | |
| CACCTAAATGAAGTTCAGAA+AGG | + | chr5.3:72326367-72326386 | None:intergenic | 35.0% | |
| CATCTCAGGTCCATAATTAA+TGG | + | chr5.3:72324889-72324908 | None:intergenic | 35.0% | |
| CATTAATTATGGACCTGAGA+TGG | - | chr5.3:72324887-72324906 | MS.gene47711:intron | 35.0% | |
| CTTTCTGAACTTCATTTAGG+TGG | - | chr5.3:72326365-72326384 | MS.gene47711:intron | 35.0% | |
| GAATTATATAATCCGGTGGT+GGG | + | chr5.3:72324858-72324877 | None:intergenic | 35.0% | |
| GATAAAATCACAATGGCTCA+AGG | - | chr5.3:72325742-72325761 | MS.gene47711:CDS | 35.0% | |
| GTACCATGAACCAAATTTGT+TGG | + | chr5.3:72325224-72325243 | None:intergenic | 35.0% | |
| GTTTGTGAAGCAATAAGTCT+AGG | + | chr5.3:72325503-72325522 | None:intergenic | 35.0% | |
| TATCAAGCTGTAGTGAAGAT+TGG | - | chr5.3:72326278-72326297 | MS.gene47711:intron | 35.0% | |
| TGAATTATATAATCCGGTGG+TGG | + | chr5.3:72324859-72324878 | None:intergenic | 35.0% | |
| TGATGAGAGAAGAAAATGGT+CGG | - | chr5.3:72324203-72324222 | MS.gene47711:CDS | 35.0% | |
| TGGTGTAGATCTTAAATGGT+GGG | + | chr5.3:72324587-72324606 | None:intergenic | 35.0% | |
| TTCTGTTTATAAGTGTGGAG+AGG | + | chr5.3:72324526-72324545 | None:intergenic | 35.0% | |
| ! | ACAAATTTGGTTCATGGTAC+TGG | - | chr5.3:72325224-72325243 | MS.gene47711:CDS | 35.0% |
| ! | ACCAACAAGGAATTCAGTTT+TGG | - | chr5.3:72325093-72325112 | MS.gene47711:intron | 35.0% |
| ! | AGTCCAACAAATTTGGTTCA+TGG | - | chr5.3:72325218-72325237 | MS.gene47711:CDS | 35.0% |
| ! | ATGATCATGGTGTTGAGAAT+AGG | - | chr5.3:72326327-72326346 | MS.gene47711:intron | 35.0% |
| ! | TAGTATCAAAGCTTCTAGGA+GGG | + | chr5.3:72325556-72325575 | None:intergenic | 35.0% |
| ! | TGATCATGGTGTTGAGAATA+GGG | - | chr5.3:72326328-72326347 | MS.gene47711:intron | 35.0% |
| ! | TTATCGACTGGAAGAGAAAA+AGG | + | chr5.3:72324367-72324386 | None:intergenic | 35.0% |
| !! | CTACTCATGTTAAGAGTACT+TGG | - | chr5.3:72325378-72325397 | MS.gene47711:CDS | 35.0% |
| AAACCGAGTGAAAGATCTTC+TGG | + | chr5.3:72324792-72324811 | None:intergenic | 40.0% | |
| AAGTGTGGAGAGGAAAAGAA+AGG | + | chr5.3:72324516-72324535 | None:intergenic | 40.0% | |
| ACAACAAACATACCCATCTC+AGG | + | chr5.3:72324903-72324922 | None:intergenic | 40.0% | |
| ACAACAACGTGTCAAGATTG+TGG | - | chr5.3:72325284-72325303 | MS.gene47711:CDS | 40.0% | |
| CTAACACACTTGAATAGAGC+CGG | + | chr5.3:72326221-72326240 | None:intergenic | 40.0% | |
| CTGCTTCATGATTGTTATGG+TGG | + | chr5.3:72324956-72324975 | None:intergenic | 40.0% | |
| CTTCATGATTGTTATGGTGG+TGG | + | chr5.3:72324953-72324972 | None:intergenic | 40.0% | |
| GACTGGAAGAGAAAAAGGTA+TGG | + | chr5.3:72324362-72324381 | None:intergenic | 40.0% | |
| GAGCTGCTTCATGATTGTTA+TGG | + | chr5.3:72324959-72324978 | None:intergenic | 40.0% | |
| GAGGTAGTATCAAAGCTTCT+AGG | + | chr5.3:72325560-72325579 | None:intergenic | 40.0% | |
| GCCAAAACTGAATTCCTTGT+TGG | + | chr5.3:72325097-72325116 | None:intergenic | 40.0% | |
| GCTGCATAAACATCATGAGA+AGG | + | chr5.3:72326461-72326480 | None:intergenic | 40.0% | |
| GGTGTAGATCTTAAATGGTG+GGG | + | chr5.3:72324586-72324605 | None:intergenic | 40.0% | |
| GGTTTCAAAGATTCTATGCC+GGG | - | chr5.3:72326182-72326201 | MS.gene47711:intron | 40.0% | |
| GTAGTATCAAAGCTTCTAGG+AGG | + | chr5.3:72325557-72325576 | None:intergenic | 40.0% | |
| GTATTAATGTGTGCAGATGC+AGG | - | chr5.3:72326161-72326180 | MS.gene47711:intron | 40.0% | |
| GTCTTCTTCATCACCAATGA+TGG | - | chr5.3:72326433-72326452 | MS.gene47711:intron | 40.0% | |
| GTGGTGTAGATCTTAAATGG+TGG | + | chr5.3:72324588-72324607 | None:intergenic | 40.0% | |
| GTGTAGATCTTAAATGGTGG+GGG | + | chr5.3:72324585-72324604 | None:intergenic | 40.0% | |
| GTGTGGCTAACTAGTATAAC+TGG | + | chr5.3:72325802-72325821 | None:intergenic | 40.0% | |
| TACTACAATCCTTCTTCGCT+TGG | + | chr5.3:72325313-72325332 | None:intergenic | 40.0% | |
| TCATGAGAAGGATCCATCAT+TGG | + | chr5.3:72326449-72326468 | None:intergenic | 40.0% | |
| TCTGAACTTCATTTAGGTGG+TGG | - | chr5.3:72326368-72326387 | MS.gene47711:intron | 40.0% | |
| TCTTTCACTCGGTTTCAATG+CGG | - | chr5.3:72324797-72324816 | MS.gene47711:intron | 40.0% | |
| TGTATGTATGTAATGTGGGG+TGG | + | chr5.3:72324607-72324626 | None:intergenic | 40.0% | |
| TTACTTGGAGGTTCAGCTTA+TGG | - | chr5.3:72326503-72326522 | MS.gene47711:CDS | 40.0% | |
| ! | AATGGCGGTGCTAATAGAAA+TGG | - | chr5.3:72326407-72326426 | MS.gene47711:intron | 40.0% |
| ! | AATTTGGTTCATGGTACTGG+TGG | - | chr5.3:72325227-72325246 | MS.gene47711:CDS | 40.0% |
| ! | AGTATCAAAGCTTCTAGGAG+GGG | + | chr5.3:72325555-72325574 | None:intergenic | 40.0% |
| ! | ATTCAGGAGCTTTTGCTGAT+TGG | - | chr5.3:72324727-72324746 | MS.gene47711:intron | 40.0% |
| ! | GGTGGTGGTAATAATAATGG+CGG | - | chr5.3:72326392-72326411 | MS.gene47711:intron | 40.0% |
| ! | GGTTAAGTTGTGAGAGAGAA+GGG | + | chr5.3:72324341-72324360 | None:intergenic | 40.0% |
| ! | TAACAAACCTTGATGGCTAG+AGG | + | chr5.3:72325579-72325598 | None:intergenic | 40.0% |
| ! | TGGTGGTGATGAAAAGAAGA+TGG | + | chr5.3:72324930-72324949 | None:intergenic | 40.0% |
| ! | TGGTTAAGTTGTGAGAGAGA+AGG | + | chr5.3:72324342-72324361 | None:intergenic | 40.0% |
| !! | ATTGGTGGCCATGTTTTCAA+AGG | - | chr5.3:72326296-72326315 | MS.gene47711:intron | 40.0% |
| !! | ATTTGGTTCATGGTACTGGT+GGG | - | chr5.3:72325228-72325247 | MS.gene47711:CDS | 40.0% |
| !! | GGTGGTGGTGGTAATAATAA+TGG | - | chr5.3:72326389-72326408 | MS.gene47711:intron | 40.0% |
| !! | GTCAATTTGGCTTTATCGAC+TGG | + | chr5.3:72324379-72324398 | None:intergenic | 40.0% |
| !! | TGTTAAGAGTACTTGGGTAC+CGG | - | chr5.3:72325385-72325404 | MS.gene47711:CDS | 40.0% |
| !! | TTCAGGAGCTTTTGCTGATT+GGG | - | chr5.3:72324728-72324747 | MS.gene47711:intron | 40.0% |
| AGAGTGACATCAGTGGATGA+TGG | - | chr5.3:72326239-72326258 | MS.gene47711:intron | 45.0% | |
| AGGAGATTGCCTTCAGATTC+AGG | - | chr5.3:72324711-72324730 | MS.gene47711:intron | 45.0% | |
| CAACACTCTTCTGTTTGTGC+TGG | - | chr5.3:72324314-72324333 | MS.gene47711:CDS | 45.0% | |
| CAAGCTGTAGTGAAGATTGG+TGG | - | chr5.3:72326281-72326300 | MS.gene47711:intron | 45.0% | |
| CATGGAGAAGCTGTGAGTAA+AGG | + | chr5.3:72325038-72325057 | None:intergenic | 45.0% | |
| CTTTCACTCGGTTTCAATGC+GGG | - | chr5.3:72324798-72324817 | MS.gene47711:intron | 45.0% | |
| GATACTACCTCTAGCCATCA+AGG | - | chr5.3:72325569-72325588 | MS.gene47711:CDS | 45.0% | |
| GCAAAAGCTCCTGAATCTGA+AGG | + | chr5.3:72324723-72324742 | None:intergenic | 45.0% | |
| GCTCCAGAAGATCTTTCACT+CGG | - | chr5.3:72324786-72324805 | MS.gene47711:intron | 45.0% | |
| GGGGTGGTGTAGATCTTAAA+TGG | + | chr5.3:72324591-72324610 | None:intergenic | 45.0% | |
| GTGGAGAGGAAAAGAAAGGA+AGG | + | chr5.3:72324512-72324531 | None:intergenic | 45.0% | |
| GTGTGTTAGAGTGACATCAG+TGG | - | chr5.3:72326232-72326251 | MS.gene47711:intron | 45.0% | |
| GTTTATGCAGCAGCTTCAAG+TGG | - | chr5.3:72326470-72326489 | MS.gene47711:intron | 45.0% | |
| TGCTGTTGGAGCTGTAATTG+TGG | + | chr5.3:72324416-72324435 | None:intergenic | 45.0% | |
| TTGTGGAAACCAAGCGAAGA+AGG | - | chr5.3:72325301-72325320 | MS.gene47711:CDS | 45.0% | |
| ! | CAGCACAAACAGAAGAGTGT+TGG | + | chr5.3:72324316-72324335 | None:intergenic | 45.0% |
| ! | GAACTTCATTTAGGTGGTGG+TGG | - | chr5.3:72326371-72326390 | MS.gene47711:intron | 45.0% |
| ! | GGTTCTAGTGGTTCAACTTC+TGG | - | chr5.3:72325467-72325486 | MS.gene47711:CDS | 45.0% |
| !! | CATGATTGTTATGGTGGTGG+TGG | + | chr5.3:72324950-72324969 | None:intergenic | 45.0% |
| TATGCAGCAGCTTCAAGTGG+TGG | - | chr5.3:72326473-72326492 | MS.gene47711:intron | 50.0% | |
| TGTTGTTCCTCCACCACTAC+TGG | + | chr5.3:72325270-72325289 | None:intergenic | 50.0% | |
| !! | ACTGGTGGGTTAACTGGTTC+TGG | - | chr5.3:72325242-72325261 | MS.gene47711:CDS | 50.0% |
| !! | ACTGGTTCTGGTACCAGTAG+TGG | - | chr5.3:72325254-72325273 | MS.gene47711:CDS | 50.0% |
| !! | ATATAATCCGGTGGTGGGTC+CGG | + | chr5.3:72324853-72324872 | None:intergenic | 50.0% |
| !! | CATGGTACTGGTGGGTTAAC+TGG | - | chr5.3:72325236-72325255 | MS.gene47711:CDS | 50.0% |
| !! | CTTCATTTAGGTGGTGGTGG+TGG | - | chr5.3:72326374-72326393 | MS.gene47711:intron | 50.0% |
| !! | GATTGTTATGGTGGTGGTGG+TGG | + | chr5.3:72324947-72324966 | None:intergenic | 50.0% |
| CGTTCCCTTCTTCTAGCAGC+CGG | + | chr5.3:72325407-72325426 | None:intergenic | 55.0% | |
| GCTTCTGCTGCTGTTGCTGT+TGG | + | chr5.3:72324430-72324449 | None:intergenic | 55.0% | |
| TATAACCCCGACACCGAGAG+CGG | + | chr5.3:72325015-72325034 | None:intergenic | 55.0% | |
| TCTGGTACCAGTAGTGGTGG+AGG | - | chr5.3:72325260-72325279 | MS.gene47711:CDS | 55.0% | |
| TTCTTCGACCGCGACAACGA+CGG | - | chr5.3:72325430-72325449 | MS.gene47711:CDS | 55.0% | |
| ! | GGTTCTGGTACCAGTAGTGG+TGG | - | chr5.3:72325257-72325276 | MS.gene47711:CDS | 55.0% |
| !! | AGTGGTGGTGGAGGGTTACT+TGG | - | chr5.3:72326488-72326507 | MS.gene47711:intron | 55.0% |
| !! | CAGCTTCAAGTGGTGGTGGA+GGG | - | chr5.3:72326480-72326499 | MS.gene47711:intron | 55.0% |
| !! | CATTTAGGTGGTGGTGGTGG+TGG | - | chr5.3:72326377-72326396 | MS.gene47711:intron | 55.0% |
| !! | GGTACCGGCTGCTAGAAGAA+GGG | - | chr5.3:72325400-72325419 | MS.gene47711:CDS | 55.0% |
| !! | GTTGCTGGTGGTGGTTCTAG+TGG | - | chr5.3:72325455-72325474 | MS.gene47711:CDS | 55.0% |
| !! | TTCTGGAGCAGCAGCACGAA+GGG | + | chr5.3:72324775-72324794 | None:intergenic | 55.0% |
| ACAACGACGGTGGTTGCTGG+TGG | - | chr5.3:72325443-72325462 | MS.gene47711:CDS | 60.0% | |
| AGCAACCACCGTCGTTGTCG+CGG | + | chr5.3:72325441-72325460 | None:intergenic | 60.0% | |
| GCAGCAGCTTCAAGTGGTGG+TGG | - | chr5.3:72326476-72326495 | MS.gene47711:intron | 60.0% | |
| ! | GTGGCGGGGTTAAGAGAGTG+AGG | + | chr5.3:72324993-72325012 | None:intergenic | 60.0% |
| !! | CTTCTGGAGCAGCAGCACGA+AGG | + | chr5.3:72324776-72324795 | None:intergenic | 60.0% |
| !! | GCAGCTTCAAGTGGTGGTGG+AGG | - | chr5.3:72326479-72326498 | MS.gene47711:intron | 60.0% |
| !! | GGGTACCGGCTGCTAGAAGA+AGG | - | chr5.3:72325399-72325418 | MS.gene47711:CDS | 60.0% |
| !! | GGTGGTGGAGGGTTACTTGG+AGG | - | chr5.3:72326491-72326510 | MS.gene47711:intron | 60.0% |
| ACGACGGTGGTTGCTGGTGG+TGG | - | chr5.3:72325446-72325465 | MS.gene47711:CDS | 65.0% | |
| CTTAACCCCGCCACCGCTCT+CGG | - | chr5.3:72324999-72325018 | MS.gene47711:intron | 65.0% | |
| GCCGGGTCAAGTACGTGCAC+CGG | - | chr5.3:72326199-72326218 | MS.gene47711:intron | 65.0% | |
| GCCGGTGCACGTACTTGACC+CGG | + | chr5.3:72326203-72326222 | None:intergenic | 65.0% | |
| GCGACAACGACGGTGGTTGC+TGG | - | chr5.3:72325440-72325459 | MS.gene47711:CDS | 65.0% | |
| GGAAACGCCGGAGCTTCCAC+CGG | - | chr5.3:72324831-72324850 | MS.gene47711:intron | 65.0% | |
| GGTGGAAGCTCCGGCGTTTC+CGG | + | chr5.3:72324832-72324851 | None:intergenic | 65.0% | |
| TTCAATGCGGGTCCCACCGC+CGG | - | chr5.3:72324810-72324829 | MS.gene47711:intron | 65.0% | |
| TTCGACCGCGACAACGACGG+TGG | - | chr5.3:72325433-72325452 | MS.gene47711:CDS | 65.0% | |
| !! | TAATCCGGTGGTGGGTCCGG+TGG | + | chr5.3:72324850-72324869 | None:intergenic | 65.0% |
| AACCCCGACACCGAGAGCGG+TGG | + | chr5.3:72325012-72325031 | None:intergenic | 70.0% | |
| GCTTCCACCGGACCCACCAC+CGG | - | chr5.3:72324843-72324862 | MS.gene47711:intron | 70.0% | |
| GGAAGCTCCGGCGTTTCCGG+CGG | + | chr5.3:72324829-72324848 | None:intergenic | 70.0% | |
| GGTGGGTCCGGTGGAAGCTC+CGG | + | chr5.3:72324841-72324860 | None:intergenic | 70.0% | |
| AGCTCCGGCGTTTCCGGCGG+TGG | + | chr5.3:72324826-72324845 | None:intergenic | 75.0% | |
| CCCGACACCGAGAGCGGTGG+CGG | + | chr5.3:72325009-72325028 | None:intergenic | 75.0% | |
| CCGACACCGAGAGCGGTGGC+GGG | + | chr5.3:72325008-72325027 | None:intergenic | 75.0% | |
| CGACACCGAGAGCGGTGGCG+GGG | + | chr5.3:72325007-72325026 | None:intergenic | 75.0% | |
| GCTCCGGCGTTTCCGGCGGT+GGG | + | chr5.3:72324825-72324844 | None:intergenic | 75.0% | |
| GGTCCCACCGCCGGAAACGC+CGG | - | chr5.3:72324819-72324838 | MS.gene47711:intron | 75.0% | |
| ! | CCCGCCACCGCTCTCGGTGT+CGG | - | chr5.3:72325005-72325024 | MS.gene47711:intron | 75.0% |
| !! | CCGCCACCGCTCTCGGTGTC+GGG | - | chr5.3:72325006-72325025 | MS.gene47711:intron | 75.0% |
| !! | CGCCACCGCTCTCGGTGTCG+GGG | - | chr5.3:72325007-72325026 | MS.gene47711:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72324181 | 72326541 | 72324181 | ID=MS.gene47711 |
| chr5.3 | mRNA | 72324181 | 72326541 | 72324181 | ID=MS.gene47711.t1;Parent=MS.gene47711 |
| chr5.3 | exon | 72326502 | 72326541 | 72326502 | ID=MS.gene47711.t1.exon1;Parent=MS.gene47711.t1 |
| chr5.3 | CDS | 72326502 | 72326541 | 72326502 | ID=cds.MS.gene47711.t1;Parent=MS.gene47711.t1 |
| chr5.3 | exon | 72325132 | 72326025 | 72325132 | ID=MS.gene47711.t1.exon2;Parent=MS.gene47711.t1 |
| chr5.3 | CDS | 72325132 | 72326025 | 72325132 | ID=cds.MS.gene47711.t1;Parent=MS.gene47711.t1 |
| chr5.3 | exon | 72324181 | 72324545 | 72324181 | ID=MS.gene47711.t1.exon3;Parent=MS.gene47711.t1 |
| chr5.3 | CDS | 72324181 | 72324545 | 72324181 | ID=cds.MS.gene47711.t1;Parent=MS.gene47711.t1 |
| Gene Sequence |
| Protein sequence |
