Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48285.t1 | XP_003608902.2 | 98 | 357 | 7 | 0 | 1 | 357 | 24 | 380 | 1.90E-207 | 731.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48285.t1 | Q9STM6 | 63.7 | 358 | 120 | 3 | 2 | 353 | 24 | 377 | 6.5e-132 | 471.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48285.t1 | G7JMN9 | 98.0 | 357 | 7 | 0 | 1 | 357 | 24 | 380 | 1.4e-207 | 731.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene48285 | 0.801162 | 1.03E-48 | -1.69E-46 |
| MS.gene049356 | MS.gene48285 | 0.817785 | 2.75E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene48285 | 0.803095 | 4.11E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene48285 | 0.806735 | 7.12E-50 | -1.69E-46 |
| MS.gene049907 | MS.gene48285 | 0.834273 | 3.30E-56 | -1.69E-46 |
| MS.gene050099 | MS.gene48285 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene050128 | MS.gene48285 | 0.846864 | 1.66E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene48285 | 0.828222 | 1.01E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene48285 | 0.80757 | 4.74E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene48285 | 0.832545 | 8.89E-56 | -1.69E-46 |
| MS.gene050581 | MS.gene48285 | 0.830695 | 2.54E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene48285 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene48285 | 0.809921 | 1.49E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene48285 | 0.819007 | 1.46E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene48285 | 0.812091 | 5.05E-51 | -1.69E-46 |
| MS.gene051255 | MS.gene48285 | 0.883446 | 4.46E-71 | -1.69E-46 |
| MS.gene051360 | MS.gene48285 | 0.822854 | 1.90E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene48285 | 0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene48285 | 0.841303 | 5.16E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene48285 | 0.822739 | 2.02E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene48285 | 0.806829 | 6.80E-50 | -1.69E-46 |
| MS.gene052287 | MS.gene48285 | 0.830889 | 2.28E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene48285 | 0.818815 | 1.61E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene48285 | 0.833077 | 6.56E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene48285 | 0.813338 | 2.69E-51 | -1.69E-46 |
| MS.gene052999 | MS.gene48285 | 0.810492 | 1.12E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene48285 | 0.85749 | 1.58E-62 | -1.69E-46 |
| MS.gene053557 | MS.gene48285 | 0.823064 | 1.69E-53 | -1.69E-46 |
| MS.gene053813 | MS.gene48285 | 0.854034 | 1.61E-61 | -1.69E-46 |
| MS.gene053928 | MS.gene48285 | 0.800571 | 1.35E-48 | -1.69E-46 |
| MS.gene054010 | MS.gene48285 | 0.853544 | 2.23E-61 | -1.69E-46 |
| MS.gene054011 | MS.gene48285 | 0.832814 | 7.63E-56 | -1.69E-46 |
| MS.gene054012 | MS.gene48285 | 0.842536 | 2.44E-58 | -1.69E-46 |
| MS.gene054013 | MS.gene48285 | 0.850016 | 2.23E-60 | -1.69E-46 |
| MS.gene054214 | MS.gene48285 | 0.801086 | 1.06E-48 | -1.69E-46 |
| MS.gene054376 | MS.gene48285 | 0.816222 | 6.18E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene48285 | 0.81 | 1.43E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene48285 | 0.847992 | 8.14E-60 | -1.69E-46 |
| MS.gene055428 | MS.gene48285 | 0.806676 | 7.33E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene48285 | 0.838899 | 2.19E-57 | -1.69E-46 |
| MS.gene055666 | MS.gene48285 | 0.822036 | 2.94E-53 | -1.69E-46 |
| MS.gene056191 | MS.gene48285 | 0.861669 | 8.72E-64 | -1.69E-46 |
| MS.gene056410 | MS.gene48285 | 0.861828 | 7.80E-64 | -1.69E-46 |
| MS.gene056422 | MS.gene48285 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene48285 | 0.807364 | 5.24E-50 | -1.69E-46 |
| MS.gene056611 | MS.gene48285 | 0.836788 | 7.62E-57 | -1.69E-46 |
| MS.gene056902 | MS.gene48285 | 0.827804 | 1.28E-54 | -1.69E-46 |
| MS.gene056931 | MS.gene48285 | 0.840584 | 7.96E-58 | -1.69E-46 |
| MS.gene056933 | MS.gene48285 | 0.838742 | 2.40E-57 | -1.69E-46 |
| MS.gene056935 | MS.gene48285 | 0.824941 | 6.14E-54 | -1.69E-46 |
| MS.gene057448 | MS.gene48285 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene48285 | 0.805724 | 1.16E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene48285 | 0.81372 | 2.22E-51 | -1.69E-46 |
| MS.gene057537 | MS.gene48285 | 0.806581 | 7.67E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene48285 | 0.820247 | 7.59E-53 | -1.69E-46 |
| MS.gene057796 | MS.gene48285 | 0.817527 | 3.15E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene48285 | 0.814842 | 1.25E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene48285 | 0.80985 | 1.54E-50 | -1.69E-46 |
| MS.gene05806 | MS.gene48285 | 0.805283 | 1.44E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene48285 | 0.834128 | 3.58E-56 | -1.69E-46 |
| MS.gene058459 | MS.gene48285 | 0.832956 | 7.03E-56 | -1.69E-46 |
| MS.gene058660 | MS.gene48285 | 0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene058903 | MS.gene48285 | 0.857901 | 1.19E-62 | -1.69E-46 |
| MS.gene058928 | MS.gene48285 | 0.821876 | 3.20E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene48285 | 0.824684 | 7.06E-54 | -1.69E-46 |
| MS.gene059129 | MS.gene48285 | 0.832818 | 7.61E-56 | -1.69E-46 |
| MS.gene059294 | MS.gene48285 | 0.858272 | 9.23E-63 | -1.69E-46 |
| MS.gene059366 | MS.gene48285 | 0.800156 | 1.64E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene48285 | 0.813907 | 2.02E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene48285 | 0.800157 | 1.64E-48 | -1.69E-46 |
| MS.gene059674 | MS.gene48285 | 0.806321 | 8.71E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene48285 | 0.829844 | 4.10E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene48285 | 0.826117 | 3.23E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene48285 | 0.83826 | 3.20E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene48285 | 0.837446 | 5.17E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene48285 | 0.864995 | 8.13E-65 | -1.69E-46 |
| MS.gene059807 | MS.gene48285 | 0.803034 | 4.23E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene48285 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene05986 | MS.gene48285 | 0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene059894 | MS.gene48285 | 0.809103 | 2.23E-50 | -1.69E-46 |
| MS.gene059974 | MS.gene48285 | 0.982554 | 2.16E-155 | -1.69E-46 |
| MS.gene060005 | MS.gene48285 | 0.911627 | 4.91E-83 | -1.69E-46 |
| MS.gene060356 | MS.gene48285 | 0.809606 | 1.74E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene48285 | 0.840619 | 7.80E-58 | -1.69E-46 |
| MS.gene060559 | MS.gene48285 | 0.823759 | 1.16E-53 | -1.69E-46 |
| MS.gene060799 | MS.gene48285 | 0.839014 | 2.04E-57 | -1.69E-46 |
| MS.gene060800 | MS.gene48285 | 0.867161 | 1.68E-65 | -1.69E-46 |
| MS.gene060801 | MS.gene48285 | 0.845857 | 3.13E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene48285 | 0.835248 | 1.87E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene48285 | 0.815622 | 8.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCTTCTCAGTATATTAAT+TGG | 0.148489 | 8.1:+20316810 | MS.gene48285:CDS |
| TTTCCTGAATTCTTGTAATT+TGG | 0.171860 | 8.1:-20316606 | None:intergenic |
| GGTGTTAACTTTGCTGTTGC+TGG | 0.263157 | 8.1:+20315966 | MS.gene48285:CDS |
| CAGTGTCTCAGGAGCTTTAC+AGG | 0.269526 | 8.1:+20316238 | MS.gene48285:CDS |
| GCTGAAGGTCCAAGTGGTTT+TGG | 0.306391 | 8.1:+20315789 | MS.gene48285:CDS |
| AATGATTATGCTTACACTCT+TGG | 0.315837 | 8.1:+20316173 | MS.gene48285:CDS |
| TAAACCATGAATTCTTTGTT+AGG | 0.329985 | 8.1:+20316000 | MS.gene48285:CDS |
| AAAAGATCAAATGATACTTT+TGG | 0.334241 | 8.1:+20315945 | MS.gene48285:CDS |
| TCTTACCGAAGCTATGTATA+AGG | 0.339713 | 8.1:+20316844 | MS.gene48285:CDS |
| TATTCCTAACAAAGAATTCA+TGG | 0.348303 | 8.1:-20316004 | None:intergenic |
| CAGTCTCAGAAGATACTATA+AGG | 0.400671 | 8.1:+20316201 | MS.gene48285:CDS |
| CCCTTCTCAGTATATTAATT+GGG | 0.408026 | 8.1:+20316811 | MS.gene48285:CDS |
| GTGCAAGGTCATCCACCAAC+AGG | 0.409203 | 8.1:+20316476 | MS.gene48285:CDS |
| TTCAAGAAAATTTACGCCTT+CGG | 0.409856 | 8.1:+20315732 | MS.gene48285:CDS |
| ATGAAGAATCCAAGCAAGTA+TGG | 0.412451 | 8.1:+20316686 | MS.gene48285:CDS |
| TAAGGTTGTGATTGTTGCTT+AGG | 0.412894 | 8.1:-20316574 | None:intergenic |
| GTTTCTAATATGTTTCTTCA+AGG | 0.421614 | 8.1:+20316869 | MS.gene48285:CDS |
| CTTGCAATGTCCAGTGTCTC+AGG | 0.422400 | 8.1:+20316227 | MS.gene48285:CDS |
| CCTAAGTCGTCTCTGTCATC+TGG | 0.426751 | 8.1:-20316530 | None:intergenic |
| AAGCCAAATTACAAGAATTC+AGG | 0.428938 | 8.1:+20316603 | MS.gene48285:CDS |
| GTAATTTGGCTTGCAGCATA+AGG | 0.433254 | 8.1:-20316592 | None:intergenic |
| TTCAGTGTCTGCTGTGGATC+AGG | 0.434569 | 8.1:+20316722 | MS.gene48285:CDS |
| TCTTTGAATCCATACTTGCT+TGG | 0.457241 | 8.1:-20316695 | None:intergenic |
| TCCATCAGAATATCTGTTTG+TGG | 0.461336 | 8.1:-20315856 | None:intergenic |
| GCAAACACAGTAAAGTTGTA+AGG | 0.470362 | 8.1:-20316752 | None:intergenic |
| CTAAATACATTGTCAGTGTA+AGG | 0.474491 | 8.1:-20316502 | None:intergenic |
| CTGTAAAGCTCCTGAGACAC+TGG | 0.475224 | 8.1:-20316237 | None:intergenic |
| CTAGTGCAGACAGTAGCATT+AGG | 0.483410 | 8.1:-20316788 | None:intergenic |
| TTTACTGTGTTTGCTACTTG+TGG | 0.486375 | 8.1:+20316761 | MS.gene48285:CDS |
| CCCAATTAATATACTGAGAA+GGG | 0.489096 | 8.1:-20316811 | None:intergenic |
| ATTGTGGTTTAATAAGTACT+TGG | 0.491945 | 8.1:+20316070 | MS.gene48285:CDS |
| AACAACCTTATACATAGCTT+CGG | 0.507341 | 8.1:-20316849 | None:intergenic |
| ACCTTGCACAACTAGGTACT+TGG | 0.509796 | 8.1:-20316462 | None:intergenic |
| CTATTCAAACTCAGATATTG+TGG | 0.510682 | 8.1:+20316054 | MS.gene48285:CDS |
| AATCAACTCCTTGACAACCT+TGG | 0.512025 | 8.1:-20316097 | None:intergenic |
| TTGAAGAAAGTTGTTCCATA+TGG | 0.515073 | 8.1:-20315828 | None:intergenic |
| GATACATGGCCAAAACCACT+TGG | 0.515353 | 8.1:-20315798 | None:intergenic |
| TGACGATAAGGAGGAAGATA+AGG | 0.521221 | 8.1:-20315918 | None:intergenic |
| AGTGTAAGGCACCCTGTTGG+TGG | 0.525307 | 8.1:-20316488 | None:intergenic |
| TCTCAGTATATTAATTGGGA+TGG | 0.526757 | 8.1:+20316815 | MS.gene48285:CDS |
| TTTGCAGTCATTGCTTGAGA+AGG | 0.530230 | 8.1:+20316436 | MS.gene48285:intron |
| CCAGATGACAGAGACGACTT+AGG | 0.531180 | 8.1:+20316530 | MS.gene48285:CDS |
| TTGCAGTCATTGCTTGAGAA+GGG | 0.533529 | 8.1:+20316437 | MS.gene48285:intron |
| TCCCAATTAATATACTGAGA+AGG | 0.543751 | 8.1:-20316812 | None:intergenic |
| CATGTATCAAACTCACCATA+TGG | 0.543972 | 8.1:+20315813 | MS.gene48285:CDS |
| GCATAAACTATGACTGCATG+TGG | 0.551677 | 8.1:-20316635 | None:intergenic |
| CAGAATATCTGTTTGTGGAA+TGG | 0.551682 | 8.1:-20315851 | None:intergenic |
| AATAAGTACTTGGAGAGCCA+AGG | 0.559798 | 8.1:+20316080 | MS.gene48285:CDS |
| TTGGAGAGCCAAGGTTGTCA+AGG | 0.574397 | 8.1:+20316089 | MS.gene48285:CDS |
| GTGGATGACCTTGCACAACT+AGG | 0.575276 | 8.1:-20316469 | None:intergenic |
| TTGGATTCTTCATCACAGTA+CGG | 0.581211 | 8.1:-20316676 | None:intergenic |
| CATATGGTGAGTTTGATACA+TGG | 0.583710 | 8.1:-20315812 | None:intergenic |
| TCCACAAACAGATATTCTGA+TGG | 0.587630 | 8.1:+20315855 | MS.gene48285:CDS |
| GGAGACTCTTTCACAGACAC+AGG | 0.589716 | 8.1:+20315753 | MS.gene48285:CDS |
| GGCAACACACACAACGCTGA+AGG | 0.600278 | 8.1:+20315774 | MS.gene48285:CDS |
| GTCTGTGAAAGAGTCTCCGA+AGG | 0.622353 | 8.1:-20315748 | None:intergenic |
| AAGTCGTCTCTGTCATCTGG+AGG | 0.624671 | 8.1:-20316527 | None:intergenic |
| GCCAAGTACCTAGTTGTGCA+AGG | 0.625395 | 8.1:+20316461 | MS.gene48285:CDS |
| GTCAGTGTAAGGCACCCTGT+TGG | 0.629703 | 8.1:-20316491 | None:intergenic |
| TGCAAGGTCATCCACCAACA+GGG | 0.656181 | 8.1:+20316477 | MS.gene48285:CDS |
| TTGGAAAACAAAGAGAGACA+TGG | 0.662787 | 8.1:+20316923 | MS.gene48285:CDS |
| AACACAGTAAAGTTGTAAGG+AGG | 0.674046 | 8.1:-20316749 | None:intergenic |
| GATATGTTCAGTGTCTGCTG+TGG | 0.678417 | 8.1:+20316716 | MS.gene48285:CDS |
| CACAACGCTGAAGGTCCAAG+TGG | 0.686660 | 8.1:+20315783 | MS.gene48285:CDS |
| ATCTGAGTTTGAATAGACTG+AGG | 0.688837 | 8.1:-20316047 | None:intergenic |
| CATAAACTATGACTGCATGT+GGG | 0.692524 | 8.1:-20316634 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATGGTTTATTTGT+TGG | + | chr8.1:20316312-20316331 | MS.gene48285:intron | 15.0% |
| !! | AAAAATGGGAGTTATATATA+TGG | + | chr8.1:20316300-20316319 | MS.gene48285:intron | 20.0% |
| !!! | AAAAGATCAAATGATACTTT+TGG | + | chr8.1:20315945-20315964 | MS.gene48285:CDS | 20.0% |
| !!! | TTTTCCAACAAAAAATCAAA+TGG | - | chr8.1:20316911-20316930 | None:intergenic | 20.0% |
| ! | AAGATTAGTGCACATAAAAA+TGG | + | chr8.1:20316285-20316304 | MS.gene48285:intron | 25.0% |
| ! | AGATTAGTGCACATAAAAAT+GGG | + | chr8.1:20316286-20316305 | MS.gene48285:intron | 25.0% |
| ! | ATTGTGGTTTAATAAGTACT+TGG | + | chr8.1:20316070-20316089 | MS.gene48285:CDS | 25.0% |
| ! | GTTTCTAATATGTTTCTTCA+AGG | + | chr8.1:20316869-20316888 | MS.gene48285:CDS | 25.0% |
| ! | TAAACCATGAATTCTTTGTT+AGG | + | chr8.1:20316000-20316019 | MS.gene48285:CDS | 25.0% |
| ! | TATTCCTAACAAAGAATTCA+TGG | - | chr8.1:20316007-20316026 | None:intergenic | 25.0% |
| ! | TTTCCTGAATTCTTGTAATT+TGG | - | chr8.1:20316609-20316628 | None:intergenic | 25.0% |
| !!! | ATTTTGATGAGACTCTTTTT+TGG | + | chr8.1:20316132-20316151 | MS.gene48285:CDS | 25.0% |
| AACAACCTTATACATAGCTT+CGG | - | chr8.1:20316852-20316871 | None:intergenic | 30.0% | |
| AAGCCAAATTACAAGAATTC+AGG | + | chr8.1:20316603-20316622 | MS.gene48285:CDS | 30.0% | |
| AATGATTATGCTTACACTCT+TGG | + | chr8.1:20316173-20316192 | MS.gene48285:CDS | 30.0% | |
| ACAAAAAATCAAATGGAGGT+TGG | - | chr8.1:20316904-20316923 | None:intergenic | 30.0% | |
| CCCAATTAATATACTGAGAA+GGG | - | chr8.1:20316814-20316833 | None:intergenic | 30.0% | |
| CCCTTCTCAGTATATTAATT+GGG | + | chr8.1:20316811-20316830 | MS.gene48285:CDS | 30.0% | |
| CTAAATACATTGTCAGTGTA+AGG | - | chr8.1:20316505-20316524 | None:intergenic | 30.0% | |
| CTATTCAAACTCAGATATTG+TGG | + | chr8.1:20316054-20316073 | MS.gene48285:CDS | 30.0% | |
| GAAAAAAAATCTCTAGACCA+AGG | - | chr8.1:20316345-20316364 | None:intergenic | 30.0% | |
| TCCAACAAAAAATCAAATGG+AGG | - | chr8.1:20316908-20316927 | None:intergenic | 30.0% | |
| TCCCAATTAATATACTGAGA+AGG | - | chr8.1:20316815-20316834 | None:intergenic | 30.0% | |
| TCTCAGTATATTAATTGGGA+TGG | + | chr8.1:20316815-20316834 | MS.gene48285:CDS | 30.0% | |
| TTCAAGAAAATTTACGCCTT+CGG | + | chr8.1:20315732-20315751 | MS.gene48285:CDS | 30.0% | |
| TTGAAGAAAGTTGTTCCATA+TGG | - | chr8.1:20315831-20315850 | None:intergenic | 30.0% | |
| ! | AAGGCGTAAATTTTCTTGAA+AGG | - | chr8.1:20315732-20315751 | None:intergenic | 30.0% |
| ! | TATGGTTTATTTGTTGGTCT+TGG | + | chr8.1:20316318-20316337 | MS.gene48285:intron | 30.0% |
| !!! | ACCTCCATTTGATTTTTTGT+TGG | + | chr8.1:20316904-20316923 | MS.gene48285:CDS | 30.0% |
| !!! | CTTTTTTGGTTTGGTGAAAT+TGG | + | chr8.1:20316146-20316165 | MS.gene48285:CDS | 30.0% |
| AACACAGTAAAGTTGTAAGG+AGG | - | chr8.1:20316752-20316771 | None:intergenic | 35.0% | |
| ATCTGAGTTTGAATAGACTG+AGG | - | chr8.1:20316050-20316069 | None:intergenic | 35.0% | |
| ATGAAGAATCCAAGCAAGTA+TGG | + | chr8.1:20316686-20316705 | MS.gene48285:CDS | 35.0% | |
| CAGAATATCTGTTTGTGGAA+TGG | - | chr8.1:20315854-20315873 | None:intergenic | 35.0% | |
| CAGTCTCAGAAGATACTATA+AGG | + | chr8.1:20316201-20316220 | MS.gene48285:CDS | 35.0% | |
| CATAAACTATGACTGCATGT+GGG | - | chr8.1:20316637-20316656 | None:intergenic | 35.0% | |
| CATATGGTGAGTTTGATACA+TGG | - | chr8.1:20315815-20315834 | None:intergenic | 35.0% | |
| CATGTATCAAACTCACCATA+TGG | + | chr8.1:20315813-20315832 | MS.gene48285:CDS | 35.0% | |
| GCAAACACAGTAAAGTTGTA+AGG | - | chr8.1:20316755-20316774 | None:intergenic | 35.0% | |
| GCCCTTCTCAGTATATTAAT+TGG | + | chr8.1:20316810-20316829 | MS.gene48285:CDS | 35.0% | |
| TCCACAAACAGATATTCTGA+TGG | + | chr8.1:20315855-20315874 | MS.gene48285:CDS | 35.0% | |
| TCCATCAGAATATCTGTTTG+TGG | - | chr8.1:20315859-20315878 | None:intergenic | 35.0% | |
| TCTTACCGAAGCTATGTATA+AGG | + | chr8.1:20316844-20316863 | MS.gene48285:CDS | 35.0% | |
| TCTTTGAATCCATACTTGCT+TGG | - | chr8.1:20316698-20316717 | None:intergenic | 35.0% | |
| TTGGAAAACAAAGAGAGACA+TGG | + | chr8.1:20316923-20316942 | MS.gene48285:CDS | 35.0% | |
| TTGGATTCTTCATCACAGTA+CGG | - | chr8.1:20316679-20316698 | None:intergenic | 35.0% | |
| ! | GATCTTTTGATGTGACGATA+AGG | - | chr8.1:20315933-20315952 | None:intergenic | 35.0% |
| ! | TAAGGTTGTGATTGTTGCTT+AGG | - | chr8.1:20316577-20316596 | None:intergenic | 35.0% |
| ! | TTTACTGTGTTTGCTACTTG+TGG | + | chr8.1:20316761-20316780 | MS.gene48285:CDS | 35.0% |
| !!! | GATGAGACTCTTTTTTGGTT+TGG | + | chr8.1:20316137-20316156 | MS.gene48285:CDS | 35.0% |
| AATAAGTACTTGGAGAGCCA+AGG | + | chr8.1:20316080-20316099 | MS.gene48285:CDS | 40.0% | |
| AATCAACTCCTTGACAACCT+TGG | - | chr8.1:20316100-20316119 | None:intergenic | 40.0% | |
| GCATAAACTATGACTGCATG+TGG | - | chr8.1:20316638-20316657 | None:intergenic | 40.0% | |
| TGACGATAAGGAGGAAGATA+AGG | - | chr8.1:20315921-20315940 | None:intergenic | 40.0% | |
| TTGCAGTCATTGCTTGAGAA+GGG | + | chr8.1:20316437-20316456 | MS.gene48285:intron | 40.0% | |
| TTTGCAGTCATTGCTTGAGA+AGG | + | chr8.1:20316436-20316455 | MS.gene48285:intron | 40.0% | |
| ! | CATTGATAATTCGCGAGGAT+CGG | - | chr8.1:20316378-20316397 | None:intergenic | 40.0% |
| ! | CTTTTGATGTGACGATAAGG+AGG | - | chr8.1:20315930-20315949 | None:intergenic | 40.0% |
| !! | GAAAGCATTGATAATTCGCG+AGG | - | chr8.1:20316383-20316402 | None:intergenic | 40.0% |
| !! | GTAATTTGGCTTGCAGCATA+AGG | - | chr8.1:20316595-20316614 | None:intergenic | 40.0% |
| !! | TATTTGTTGGTCTTGGACCT+TGG | + | chr8.1:20316325-20316344 | MS.gene48285:intron | 40.0% |
| ACCTTGCACAACTAGGTACT+TGG | - | chr8.1:20316465-20316484 | None:intergenic | 45.0% | |
| CTAGTGCAGACAGTAGCATT+AGG | - | chr8.1:20316791-20316810 | None:intergenic | 45.0% | |
| GATACATGGCCAAAACCACT+TGG | - | chr8.1:20315801-20315820 | None:intergenic | 45.0% | |
| GATATGTTCAGTGTCTGCTG+TGG | + | chr8.1:20316716-20316735 | MS.gene48285:CDS | 45.0% | |
| !! | GGTGTTAACTTTGCTGTTGC+TGG | + | chr8.1:20315966-20315985 | MS.gene48285:CDS | 45.0% |
| AAGTCGTCTCTGTCATCTGG+AGG | - | chr8.1:20316530-20316549 | None:intergenic | 50.0% | |
| CAGTGTCTCAGGAGCTTTAC+AGG | + | chr8.1:20316238-20316257 | MS.gene48285:CDS | 50.0% | |
| CCAGATGACAGAGACGACTT+AGG | + | chr8.1:20316530-20316549 | MS.gene48285:CDS | 50.0% | |
| CCTAAGTCGTCTCTGTCATC+TGG | - | chr8.1:20316533-20316552 | None:intergenic | 50.0% | |
| CTGTAAAGCTCCTGAGACAC+TGG | - | chr8.1:20316240-20316259 | None:intergenic | 50.0% | |
| CTTGCAATGTCCAGTGTCTC+AGG | + | chr8.1:20316227-20316246 | MS.gene48285:CDS | 50.0% | |
| GCCAAGTACCTAGTTGTGCA+AGG | + | chr8.1:20316461-20316480 | MS.gene48285:CDS | 50.0% | |
| GGAGACTCTTTCACAGACAC+AGG | + | chr8.1:20315753-20315772 | MS.gene48285:CDS | 50.0% | |
| GTCTGTGAAAGAGTCTCCGA+AGG | - | chr8.1:20315751-20315770 | None:intergenic | 50.0% | |
| GTGGATGACCTTGCACAACT+AGG | - | chr8.1:20316472-20316491 | None:intergenic | 50.0% | |
| TGCAAGGTCATCCACCAACA+GGG | + | chr8.1:20316477-20316496 | MS.gene48285:CDS | 50.0% | |
| TTCAGTGTCTGCTGTGGATC+AGG | + | chr8.1:20316722-20316741 | MS.gene48285:CDS | 50.0% | |
| TTGGAGAGCCAAGGTTGTCA+AGG | + | chr8.1:20316089-20316108 | MS.gene48285:CDS | 50.0% | |
| ! | GCTGAAGGTCCAAGTGGTTT+TGG | + | chr8.1:20315789-20315808 | MS.gene48285:CDS | 50.0% |
| CACAACGCTGAAGGTCCAAG+TGG | + | chr8.1:20315783-20315802 | MS.gene48285:CDS | 55.0% | |
| GGCAACACACACAACGCTGA+AGG | + | chr8.1:20315774-20315793 | MS.gene48285:CDS | 55.0% | |
| GTGCAAGGTCATCCACCAAC+AGG | + | chr8.1:20316476-20316495 | MS.gene48285:CDS | 55.0% | |
| ! | AGTGTAAGGCACCCTGTTGG+TGG | - | chr8.1:20316491-20316510 | None:intergenic | 55.0% |
| ! | GTCAGTGTAAGGCACCCTGT+TGG | - | chr8.1:20316494-20316513 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20315691 | 20316949 | 20315691 | ID=MS.gene48285 |
| chr8.1 | mRNA | 20315691 | 20316949 | 20315691 | ID=MS.gene48285.t1;Parent=MS.gene48285 |
| chr8.1 | exon | 20315691 | 20316259 | 20315691 | ID=MS.gene48285.t1.exon1;Parent=MS.gene48285.t1 |
| chr8.1 | CDS | 20315691 | 20316259 | 20315691 | ID=cds.MS.gene48285.t1;Parent=MS.gene48285.t1 |
| chr8.1 | exon | 20316443 | 20316949 | 20316443 | ID=MS.gene48285.t1.exon2;Parent=MS.gene48285.t1 |
| chr8.1 | CDS | 20316443 | 20316949 | 20316443 | ID=cds.MS.gene48285.t1;Parent=MS.gene48285.t1 |
| Gene Sequence |
| Protein sequence |
