Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56412.t1 | XP_003607897.1 | 98.4 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 5.90E-63 | 250 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56412.t1 | Q8GY89 | 76.8 | 125 | 29 | 0 | 1 | 125 | 1 | 125 | 9.8e-51 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56412.t1 | Q2MGR0 | 98.4 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 4.2e-63 | 250.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene56412 | 0.834488 | 2.91E-56 | -1.69E-46 |
| MS.gene049346 | MS.gene56412 | 0.814042 | 1.88E-51 | -1.69E-46 |
| MS.gene050060 | MS.gene56412 | 0.832406 | 9.63E-56 | -1.69E-46 |
| MS.gene050315 | MS.gene56412 | 0.824214 | 9.11E-54 | -1.69E-46 |
| MS.gene050400 | MS.gene56412 | 0.811599 | 6.46E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene56412 | 0.836635 | 8.34E-57 | -1.69E-46 |
| MS.gene050426 | MS.gene56412 | -0.86794 | 9.45E-66 | -1.69E-46 |
| MS.gene050464 | MS.gene56412 | 0.809964 | 1.46E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene56412 | 0.802033 | 6.80E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene56412 | 0.812744 | 3.63E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene56412 | 0.847912 | 8.56E-60 | -1.69E-46 |
| MS.gene051171 | MS.gene56412 | 0.838454 | 2.85E-57 | -1.69E-46 |
| MS.gene051208 | MS.gene56412 | 0.841539 | 4.47E-58 | -1.69E-46 |
| MS.gene051242 | MS.gene56412 | 0.804861 | 1.76E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene56412 | 0.851195 | 1.04E-60 | -1.69E-46 |
| MS.gene051582 | MS.gene56412 | 0.87794 | 4.20E-69 | -1.69E-46 |
| MS.gene051983 | MS.gene56412 | 0.819278 | 1.26E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene56412 | -0.864973 | 8.27E-65 | -1.69E-46 |
| MS.gene052077 | MS.gene56412 | 0.843497 | 1.35E-58 | -1.69E-46 |
| MS.gene052134 | MS.gene56412 | 0.850647 | 1.48E-60 | -1.69E-46 |
| MS.gene052135 | MS.gene56412 | 0.844052 | 9.60E-59 | -1.69E-46 |
| MS.gene052176 | MS.gene56412 | 0.808398 | 3.16E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene56412 | 0.817389 | 3.38E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene56412 | 0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene56412 | 0.829089 | 6.26E-55 | -1.69E-46 |
| MS.gene052389 | MS.gene56412 | 0.802954 | 4.39E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene56412 | 0.836023 | 1.19E-56 | -1.69E-46 |
| MS.gene052481 | MS.gene56412 | 0.811544 | 6.64E-51 | -1.69E-46 |
| MS.gene052589 | MS.gene56412 | 0.834627 | 2.69E-56 | -1.69E-46 |
| MS.gene052590 | MS.gene56412 | 0.846688 | 1.86E-59 | -1.69E-46 |
| MS.gene052758 | MS.gene56412 | 0.829511 | 4.94E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene56412 | 0.812748 | 3.63E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene56412 | 0.904013 | 1.91E-79 | -1.69E-46 |
| MS.gene053836 | MS.gene56412 | 0.80439 | 2.21E-49 | -1.69E-46 |
| MS.gene053928 | MS.gene56412 | 0.805858 | 1.09E-49 | -1.69E-46 |
| MS.gene054102 | MS.gene56412 | 0.830669 | 2.58E-55 | -1.69E-46 |
| MS.gene054110 | MS.gene56412 | 0.819388 | 1.19E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene56412 | 0.831432 | 1.67E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene56412 | 0.801435 | 9.02E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene56412 | 0.809197 | 2.13E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene56412 | 0.829703 | 4.44E-55 | -1.69E-46 |
| MS.gene054918 | MS.gene56412 | 0.807295 | 5.42E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene56412 | 0.817179 | 3.77E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene56412 | 0.824768 | 6.75E-54 | -1.69E-46 |
| MS.gene055217 | MS.gene56412 | 0.823288 | 1.50E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene56412 | 0.811538 | 6.66E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene56412 | 0.830168 | 3.42E-55 | -1.69E-46 |
| MS.gene055539 | MS.gene56412 | 0.829993 | 3.77E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene56412 | 0.899844 | 1.32E-77 | -1.69E-46 |
| MS.gene05556 | MS.gene56412 | 0.837494 | 5.03E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene56412 | 0.816776 | 4.64E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene56412 | 0.883187 | 5.55E-71 | -1.69E-46 |
| MS.gene056659 | MS.gene56412 | 0.823786 | 1.15E-53 | -1.69E-46 |
| MS.gene056723 | MS.gene56412 | 0.832457 | 9.35E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene56412 | 0.813568 | 2.40E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene56412 | -0.800428 | 1.45E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene56412 | 0.804398 | 2.20E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene56412 | 0.830122 | 3.51E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene56412 | 0.846551 | 2.02E-59 | -1.69E-46 |
| MS.gene057396 | MS.gene56412 | 0.818454 | 1.94E-52 | -1.69E-46 |
| MS.gene057440 | MS.gene56412 | -0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene56412 | 0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene56412 | 0.809746 | 1.62E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene56412 | 0.853595 | 2.15E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene56412 | 0.84788 | 8.74E-60 | -1.69E-46 |
| MS.gene058276 | MS.gene56412 | 0.883761 | 3.41E-71 | -1.69E-46 |
| MS.gene058444 | MS.gene56412 | 0.81048 | 1.13E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene56412 | 0.820741 | 5.84E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene56412 | 0.833324 | 5.69E-56 | -1.69E-46 |
| MS.gene058746 | MS.gene56412 | 0.891538 | 3.63E-74 | -1.69E-46 |
| MS.gene05886 | MS.gene56412 | 0.835201 | 1.93E-56 | -1.69E-46 |
| MS.gene059011 | MS.gene56412 | 0.855696 | 5.31E-62 | -1.69E-46 |
| MS.gene059247 | MS.gene56412 | 0.85795 | 1.15E-62 | -1.69E-46 |
| MS.gene059285 | MS.gene56412 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene56412 | 0.844991 | 5.36E-59 | -1.69E-46 |
| MS.gene059512 | MS.gene56412 | 0.813946 | 1.98E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene56412 | 0.806078 | 9.79E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene56412 | 0.812259 | 4.64E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene56412 | 0.814686 | 1.36E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene56412 | 0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene56412 | 0.806589 | 7.65E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene56412 | 0.825062 | 5.75E-54 | -1.69E-46 |
| MS.gene060407 | MS.gene56412 | 0.830108 | 3.54E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene56412 | 0.833327 | 5.68E-56 | -1.69E-46 |
| MS.gene061114 | MS.gene56412 | -0.816516 | 5.31E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene56412 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene061159 | MS.gene56412 | 0.817112 | 3.91E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56412.t1 | MTR_4g084180 | 98.400 | 125 | 2 | 0 | 1 | 125 | 1 | 125 | 2.12e-89 | 255 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56412.t1 | AT1G31170 | 76.800 | 125 | 29 | 0 | 1 | 125 | 1 | 125 | 4.09e-58 | 176 |
| MS.gene56412.t1 | AT1G31170 | 76.800 | 125 | 29 | 0 | 1 | 125 | 1 | 125 | 4.09e-58 | 176 |
| MS.gene56412.t1 | AT1G31170 | 76.860 | 121 | 28 | 0 | 1 | 121 | 1 | 121 | 4.69e-55 | 168 |
| MS.gene56412.t1 | AT1G31170 | 75.200 | 125 | 29 | 1 | 1 | 125 | 1 | 123 | 1.64e-54 | 167 |
| MS.gene56412.t1 | AT1G31170 | 76.860 | 121 | 28 | 0 | 1 | 121 | 1 | 121 | 5.73e-54 | 168 |
Find 32 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAACTCCTCAAACTATT+TGG | 0.234336 | 4.4:-28699664 | None:intergenic |
| TAAAATTTAGGGGCTCTTTC+TGG | 0.234797 | 4.4:+28699792 | MS.gene56412:intron |
| GGGGCTCTTTCTGGTGGTTC+TGG | 0.256526 | 4.4:+28699801 | MS.gene56412:intron |
| ATGGATAGTATTAGTGAAAT+TGG | 0.282662 | 4.4:+28699927 | MS.gene56412:CDS |
| AAACAAAGTTCAAGAACTTA+TGG | 0.307753 | 4.4:+28699908 | MS.gene56412:CDS |
| CTTTCTGGTGGTTCTGGAAG+TGG | 0.365172 | 4.4:+28699807 | MS.gene56412:CDS |
| GAGGTTGATGGAAACTATTA+TGG | 0.381219 | 4.4:+28701343 | MS.gene56412:CDS |
| ATTGATGTGCTTGAGGTTGA+TGG | 0.382760 | 4.4:+28701331 | MS.gene56412:CDS |
| GTTGTGGTTATAGGTTTCTC+TGG | 0.391419 | 4.4:+28701535 | MS.gene56412:intron |
| TGGTGTGGGTCCAGTGATAC+TGG | 0.431666 | 4.4:+28699830 | MS.gene56412:CDS |
| GTGGCACAAAAGAGACTCTA+AGG | 0.431947 | 4.4:+28701620 | MS.gene56412:CDS |
| AAATGAGTGATGCACCATTA+GGG | 0.432228 | 4.4:-28699705 | None:intergenic |
| GGTTCTGGAAGTGGTGGTGT+GGG | 0.445849 | 4.4:+28699816 | MS.gene56412:CDS |
| CCACCATACGCTGCAAAATA+CGG | 0.452823 | 4.4:+28701596 | MS.gene56412:CDS |
| TGCAGGTTCCAAATAGTTTG+AGG | 0.463009 | 4.4:+28699656 | MS.gene56412:CDS |
| TGGTTCTGGAAGTGGTGGTG+TGG | 0.464993 | 4.4:+28699815 | MS.gene56412:CDS |
| TTTGATCTAGTCCTCATCAT+AGG | 0.468493 | 4.4:-28699879 | None:intergenic |
| TCTGCTTCATCCAACCCTAA+TGG | 0.481086 | 4.4:+28699691 | MS.gene56412:CDS |
| TTCCTCTTGATAAGATAAGA+AGG | 0.501249 | 4.4:+28699856 | MS.gene56412:CDS |
| AGAGGAAGTTCCAGTATCAC+TGG | 0.512026 | 4.4:-28699840 | None:intergenic |
| TACGAGGCTCACCAACGACT+TGG | 0.517478 | 4.4:+28701568 | MS.gene56412:CDS |
| TAGGTTTCTCTGGCTGTCAC+CGG | 0.528971 | 4.4:+28701545 | MS.gene56412:intron |
| GTCGTTGGTGAGCCTCGTAC+CGG | 0.547692 | 4.4:-28701564 | None:intergenic |
| AATTTAGGGGCTCTTTCTGG+TGG | 0.550422 | 4.4:+28699795 | MS.gene56412:intron |
| GGCCTTCTTATCTTATCAAG+AGG | 0.554502 | 4.4:-28699858 | None:intergenic |
| TCTGGTGGTTCTGGAAGTGG+TGG | 0.571088 | 4.4:+28699810 | MS.gene56412:CDS |
| CTCTGGCTGTCACCGGTACG+AGG | 0.572203 | 4.4:+28701552 | MS.gene56412:CDS |
| TGGTGGGGAGTCCAAGTCGT+TGG | 0.622695 | 4.4:-28701579 | None:intergenic |
| AGATAAGAAGGCCTATGATG+AGG | 0.627844 | 4.4:+28699868 | MS.gene56412:CDS |
| GAGTGATGCACCATTAGGGT+TGG | 0.637639 | 4.4:-28699701 | None:intergenic |
| GATGCAGATTGATGTGCTTG+AGG | 0.652589 | 4.4:+28701324 | MS.gene56412:intron |
| ATACGCTGCAAAATACGGCG+TGG | 0.718853 | 4.4:+28701601 | MS.gene56412:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATGTTAAAATTTAG+GGG | + | chr4.4:28699782-28699801 | MS.gene56412:intron | 10.0% |
| !! | CAAAATCTATTTATACTTTA+TGG | + | chr4.4:28699998-28700017 | MS.gene56412:intron | 15.0% |
| !!! | ATTGTGGATTTTTTTTTTTT+GGG | + | chr4.4:28700173-28700192 | MS.gene56412:intron | 15.0% |
| !!! | TTATTTTAACAAGAAATAGT+AGG | - | chr4.4:28701249-28701268 | None:intergenic | 15.0% |
| !!! | TTTTTAATATTAAAAGTGTG+CGG | - | chr4.4:28700250-28700269 | None:intergenic | 15.0% |
| !! | AATCTTGAAAATAAGTTAGT+CGG | - | chr4.4:28701477-28701496 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAATCCACAA+TGG | - | chr4.4:28700174-28700193 | None:intergenic | 20.0% |
| !! | TTAATATCAAAGAAAATGAC+AGG | - | chr4.4:28700663-28700682 | None:intergenic | 20.0% |
| !! | TTATATTATGTTGTGGTTAT+AGG | + | chr4.4:28701526-28701545 | MS.gene56412:intron | 20.0% |
| !!! | ATATCGATTATATTATGTTG+TGG | + | chr4.4:28701519-28701538 | MS.gene56412:intron | 20.0% |
| !!! | CATTGTGGATTTTTTTTTTT+TGG | + | chr4.4:28700172-28700191 | MS.gene56412:intron | 20.0% |
| !!! | CTCTTATTAGATTTTTTCTT+AGG | + | chr4.4:28700456-28700475 | MS.gene56412:intron | 20.0% |
| !!! | TTACATTTTCTTTGATGAAT+TGG | + | chr4.4:28700741-28700760 | MS.gene56412:intron | 20.0% |
| !!! | TTGTGGATTTTTTTTTTTTG+GGG | + | chr4.4:28700174-28700193 | MS.gene56412:intron | 20.0% |
| !!! | TTTTAATATTAAAAGTGTGC+GGG | - | chr4.4:28700249-28700268 | None:intergenic | 20.0% |
| ! | AAAAAAAAAATCCACAATGG+AGG | - | chr4.4:28700171-28700190 | None:intergenic | 25.0% |
| ! | AAACAAAGTTCAAGAACTTA+TGG | + | chr4.4:28699908-28699927 | MS.gene56412:CDS | 25.0% |
| ! | AAATGACTATTAGAACCTTA+AGG | - | chr4.4:28700080-28700099 | None:intergenic | 25.0% |
| ! | AACCTAAGACTTAAAGAAAA+TGG | - | chr4.4:28700794-28700813 | None:intergenic | 25.0% |
| ! | AATGACTATTAGAACCTTAA+GGG | - | chr4.4:28700079-28700098 | None:intergenic | 25.0% |
| ! | AGACTTAAAGAAAATGGTAA+AGG | - | chr4.4:28700788-28700807 | None:intergenic | 25.0% |
| ! | ATATTAATCTTTGTAGCGAA+GGG | + | chr4.4:28700676-28700695 | MS.gene56412:intron | 25.0% |
| ! | ATGGATAGTATTAGTGAAAT+TGG | + | chr4.4:28699927-28699946 | MS.gene56412:CDS | 25.0% |
| ! | GTTGAATACTATTGAGATTA+GGG | + | chr4.4:28701113-28701132 | MS.gene56412:intron | 25.0% |
| ! | TAAACAATCAAAACAGAACT+AGG | + | chr4.4:28701442-28701461 | MS.gene56412:intron | 25.0% |
| ! | TAATTACAAGTGTGAGTATT+CGG | + | chr4.4:28700568-28700587 | MS.gene56412:intron | 25.0% |
| ! | TGTTGAATACTATTGAGATT+AGG | + | chr4.4:28701112-28701131 | MS.gene56412:intron | 25.0% |
| ! | TGTTGTATATAAGTATACCA+TGG | + | chr4.4:28700039-28700058 | MS.gene56412:intron | 25.0% |
| ! | TTCATCAAAATTATCTTGCT+CGG | + | chr4.4:28701277-28701296 | MS.gene56412:intron | 25.0% |
| ! | TTGAATACTATTGAGATTAG+GGG | + | chr4.4:28701114-28701133 | MS.gene56412:intron | 25.0% |
| !! | AGTTATTGATAGTTGATTAG+TGG | + | chr4.4:28700290-28700309 | MS.gene56412:intron | 25.0% |
| !! | CTAAGGTTAGTTAATATGTT+TGG | + | chr4.4:28701637-28701656 | MS.gene56412:intron | 25.0% |
| !! | GTTATTGATAGTTGATTAGT+GGG | + | chr4.4:28700291-28700310 | MS.gene56412:intron | 25.0% |
| !! | TACCATTTTCTTTAAGTCTT+AGG | + | chr4.4:28700789-28700808 | MS.gene56412:intron | 25.0% |
| !! | TTTGTTAAGGGATATGTTTT+TGG | + | chr4.4:28701156-28701175 | MS.gene56412:intron | 25.0% |
| !!! | TGTGGATTTTTTTTTTTTGG+GGG | + | chr4.4:28700175-28700194 | MS.gene56412:intron | 25.0% |
| AATATGCAAAAGAGAGAGTA+AGG | - | chr4.4:28699972-28699991 | None:intergenic | 30.0% | |
| AGGAATTGTTGACACATATA+GGG | - | chr4.4:28700823-28700842 | None:intergenic | 30.0% | |
| ATATGCAAAAGAGAGAGTAA+GGG | - | chr4.4:28699971-28699990 | None:intergenic | 30.0% | |
| ATCTCAATAGTATTCAACAG+TGG | - | chr4.4:28701111-28701130 | None:intergenic | 30.0% | |
| ATGACTATTAGAACCTTAAG+GGG | - | chr4.4:28700078-28700097 | None:intergenic | 30.0% | |
| ATTAAGACACCGTACTTAAT+AGG | + | chr4.4:28700143-28700162 | MS.gene56412:intron | 30.0% | |
| ATTAAGTACGGTGTCTTAAT+TGG | - | chr4.4:28700143-28700162 | None:intergenic | 30.0% | |
| ATTGTTTATAGCGATAAGCA+CGG | - | chr4.4:28701430-28701449 | None:intergenic | 30.0% | |
| ATTTAAATAGAAGCCCCTTA+AGG | + | chr4.4:28700062-28700081 | MS.gene56412:intron | 30.0% | |
| CCATTTAAGTACCCAAAAAT+GGG | + | chr4.4:28700416-28700435 | MS.gene56412:intron | 30.0% | |
| CTCACACAAAGTTCTTAAAT+GGG | - | chr4.4:28700318-28700337 | None:intergenic | 30.0% | |
| GATATTAATCTTTGTAGCGA+AGG | + | chr4.4:28700675-28700694 | MS.gene56412:intron | 30.0% | |
| TAGGAATTGTTGACACATAT+AGG | - | chr4.4:28700824-28700843 | None:intergenic | 30.0% | |
| TATAGAACATACAGTGAGAA+TGG | - | chr4.4:28701075-28701094 | None:intergenic | 30.0% | |
| TATGGAAAGTGGTGATATTT+GGG | + | chr4.4:28700525-28700544 | MS.gene56412:intron | 30.0% | |
| TCTCAATAGTATTCAACAGT+GGG | - | chr4.4:28701110-28701129 | None:intergenic | 30.0% | |
| TCTCACACAAAGTTCTTAAA+TGG | - | chr4.4:28700319-28700338 | None:intergenic | 30.0% | |
| TGAATACTATTGAGATTAGG+GGG | + | chr4.4:28701115-28701134 | MS.gene56412:intron | 30.0% | |
| TTATGGAAAGTGGTGATATT+TGG | + | chr4.4:28700524-28700543 | MS.gene56412:intron | 30.0% | |
| TTCAGATCAGAACAATGTAA+TGG | - | chr4.4:28700967-28700986 | None:intergenic | 30.0% | |
| TTCCTCTTGATAAGATAAGA+AGG | + | chr4.4:28699856-28699875 | MS.gene56412:CDS | 30.0% | |
| ! | ACTTATGACTCTGTTTGTTA+AGG | + | chr4.4:28701143-28701162 | MS.gene56412:intron | 30.0% |
| ! | ATATTTGTTTCTCATCGTGT+AGG | + | chr4.4:28701715-28701734 | MS.gene56412:intron | 30.0% |
| ! | ATGGTATGTACTTTTCTGAA+TGG | + | chr4.4:28701362-28701381 | MS.gene56412:intron | 30.0% |
| ! | CTAACTACAAATGAAAGCAT+TGG | + | chr4.4:28701660-28701679 | MS.gene56412:intron | 30.0% |
| ! | CTTATGACTCTGTTTGTTAA+GGG | + | chr4.4:28701144-28701163 | MS.gene56412:intron | 30.0% |
| ! | GATTTTCTTGCATTTTGTGT+TGG | + | chr4.4:28701209-28701228 | MS.gene56412:intron | 30.0% |
| !! | TCTAATAAGAGCATCTACAA+TGG | - | chr4.4:28700447-28700466 | None:intergenic | 30.0% |
| !!! | CCATTTTTGGGTACTTAAAT+GGG | - | chr4.4:28700418-28700437 | None:intergenic | 30.0% |
| AAAATGAGTGATGCACCATT+AGG | - | chr4.4:28699709-28699728 | None:intergenic | 35.0% | |
| AAATGAGTGATGCACCATTA+GGG | - | chr4.4:28699708-28699727 | None:intergenic | 35.0% | |
| ACATTGTTCTGATCTGAAAG+TGG | + | chr4.4:28700969-28700988 | MS.gene56412:intron | 35.0% | |
| ATTGGTAAAGACATCACCAT+TGG | - | chr4.4:28700125-28700144 | None:intergenic | 35.0% | |
| ATTGTTCTGATCTGAAAGTG+GGG | + | chr4.4:28700971-28700990 | MS.gene56412:intron | 35.0% | |
| CATTGTTCTGATCTGAAAGT+GGG | + | chr4.4:28700970-28700989 | MS.gene56412:intron | 35.0% | |
| CCCATTTAAGTACCCAAAAA+TGG | + | chr4.4:28700415-28700434 | MS.gene56412:intron | 35.0% | |
| GGTCTTCTGATCTACATAAA+AGG | - | chr4.4:28700767-28700786 | None:intergenic | 35.0% | |
| GTGAAACTCCTCAAACTATT+TGG | - | chr4.4:28699667-28699686 | None:intergenic | 35.0% | |
| GTGTCAACAATTCCTATGTT+GGG | + | chr4.4:28700828-28700847 | MS.gene56412:intron | 35.0% | |
| TAAAATTTAGGGGCTCTTTC+TGG | + | chr4.4:28699792-28699811 | MS.gene56412:intron | 35.0% | |
| TAAGAACTTTGTGTGAGATC+TGG | + | chr4.4:28700321-28700340 | MS.gene56412:intron | 35.0% | |
| TCACATACAGTTATGGAAAG+TGG | + | chr4.4:28700514-28700533 | MS.gene56412:intron | 35.0% | |
| TGTCAAGTCACATACAGTTA+TGG | + | chr4.4:28700507-28700526 | MS.gene56412:intron | 35.0% | |
| TGTGTCAACAATTCCTATGT+TGG | + | chr4.4:28700827-28700846 | MS.gene56412:intron | 35.0% | |
| TGTGTGCATGCAATCAAAAT+TGG | + | chr4.4:28701001-28701020 | MS.gene56412:intron | 35.0% | |
| TTAAGACCCCCAACTTTAAA+CGG | + | chr4.4:28700221-28700240 | MS.gene56412:intron | 35.0% | |
| TTGGTAAAGACATCACCATT+GGG | - | chr4.4:28700124-28700143 | None:intergenic | 35.0% | |
| TTTCAAGATTCTGCTTACAC+TGG | + | chr4.4:28701487-28701506 | MS.gene56412:intron | 35.0% | |
| TTTGATCTAGTCCTCATCAT+AGG | - | chr4.4:28699882-28699901 | None:intergenic | 35.0% | |
| ! | AATTGGTCTGTAGTTAGAGA+TGG | + | chr4.4:28701018-28701037 | MS.gene56412:intron | 35.0% |
| !! | ATGGAGGTACCTATTAAGTA+CGG | - | chr4.4:28700155-28700174 | None:intergenic | 35.0% |
| !! | GAGGTTGATGGAAACTATTA+TGG | + | chr4.4:28701343-28701362 | MS.gene56412:CDS | 35.0% |
| !!! | CCCATTTTTGGGTACTTAAA+TGG | - | chr4.4:28700419-28700438 | None:intergenic | 35.0% |
| AAAAGAGTGATGTGTACGTG+TGG | + | chr4.4:28700390-28700409 | MS.gene56412:intron | 40.0% | |
| AAAGAGTGATGTGTACGTGT+GGG | + | chr4.4:28700391-28700410 | MS.gene56412:intron | 40.0% | |
| AAGAGAGAGTAAGGGATTAC+AGG | - | chr4.4:28699963-28699982 | None:intergenic | 40.0% | |
| ACTTTGTGTGAGATCTGGAT+TGG | + | chr4.4:28700326-28700345 | MS.gene56412:intron | 40.0% | |
| AGATAAGAAGGCCTATGATG+AGG | + | chr4.4:28699868-28699887 | MS.gene56412:CDS | 40.0% | |
| AGTGGTAGTTTAATCAGCAG+AGG | - | chr4.4:28701048-28701067 | None:intergenic | 40.0% | |
| ATTGATGTGCTTGAGGTTGA+TGG | + | chr4.4:28701331-28701350 | MS.gene56412:CDS | 40.0% | |
| CTTAATAGGTACCTCCATTG+TGG | + | chr4.4:28700157-28700176 | MS.gene56412:intron | 40.0% | |
| GGCCTTCTTATCTTATCAAG+AGG | - | chr4.4:28699861-28699880 | None:intergenic | 40.0% | |
| GGGGCTTCTATTTAAATCCA+TGG | - | chr4.4:28700059-28700078 | None:intergenic | 40.0% | |
| GGTGAATTGAAGCTAGAGTA+TGG | - | chr4.4:28700859-28700878 | None:intergenic | 40.0% | |
| GTTGTGGTTATAGGTTTCTC+TGG | + | chr4.4:28701535-28701554 | MS.gene56412:intron | 40.0% | |
| TAAGACCCCCAACTTTAAAC+GGG | + | chr4.4:28700222-28700241 | MS.gene56412:intron | 40.0% | |
| TAATCTTTGTAGCGAAGGGT+GGG | + | chr4.4:28700680-28700699 | MS.gene56412:intron | 40.0% | |
| TACAAGTGTGAGTATTCGGT+TGG | + | chr4.4:28700572-28700591 | MS.gene56412:intron | 40.0% | |
| TACAGTGAGAATGGCTATAG+TGG | - | chr4.4:28701066-28701085 | None:intergenic | 40.0% | |
| TGCAGGTTCCAAATAGTTTG+AGG | + | chr4.4:28699656-28699675 | MS.gene56412:CDS | 40.0% | |
| TGGTAAAGACATCACCATTG+GGG | - | chr4.4:28700123-28700142 | None:intergenic | 40.0% | |
| TTAATCTTTGTAGCGAAGGG+TGG | + | chr4.4:28700679-28700698 | MS.gene56412:intron | 40.0% | |
| ! | ACAATGGAGACACCCATTTT+TGG | - | chr4.4:28700431-28700450 | None:intergenic | 40.0% |
| ! | AGTATGGATTGACCCAACAT+AGG | - | chr4.4:28700843-28700862 | None:intergenic | 40.0% |
| !! | CAATGGAGACACCCATTTTT+GGG | - | chr4.4:28700430-28700449 | None:intergenic | 40.0% |
| AAGTGTCCGTGCTACATAGT+TGG | + | chr4.4:28700622-28700641 | MS.gene56412:intron | 45.0% | |
| AATTTAGGGGCTCTTTCTGG+TGG | + | chr4.4:28699795-28699814 | MS.gene56412:intron | 45.0% | |
| AGAGGAAGTTCCAGTATCAC+TGG | - | chr4.4:28699843-28699862 | None:intergenic | 45.0% | |
| CCACCATACGCTGCAAAATA+CGG | + | chr4.4:28701596-28701615 | MS.gene56412:CDS | 45.0% | |
| GATGCAGATTGATGTGCTTG+AGG | + | chr4.4:28701324-28701343 | MS.gene56412:intron | 45.0% | |
| GCACGGACACTTGTGATTAA+AGG | - | chr4.4:28700614-28700633 | None:intergenic | 45.0% | |
| GCTCTTTAGATCATCCCCAA+TGG | + | chr4.4:28700106-28700125 | MS.gene56412:intron | 45.0% | |
| GGAGGGATTGAGTGCTTATT+AGG | + | chr4.4:28700347-28700366 | MS.gene56412:intron | 45.0% | |
| GTGGCACAAAAGAGACTCTA+AGG | + | chr4.4:28701620-28701639 | MS.gene56412:CDS | 45.0% | |
| GTGTGTCCAACTATGTAGCA+CGG | - | chr4.4:28700631-28700650 | None:intergenic | 45.0% | |
| TCTGCTTCATCCAACCCTAA+TGG | + | chr4.4:28699691-28699710 | MS.gene56412:CDS | 45.0% | |
| ! | CGTATTTTGCAGCGTATGGT+GGG | - | chr4.4:28701598-28701617 | None:intergenic | 45.0% |
| ! | GTATTTTGCAGCGTATGGTG+GGG | - | chr4.4:28701597-28701616 | None:intergenic | 45.0% |
| ! | TGTGTGAGATCTGGATTGGA+GGG | + | chr4.4:28700330-28700349 | MS.gene56412:intron | 45.0% |
| ! | TTGTGTGAGATCTGGATTGG+AGG | + | chr4.4:28700329-28700348 | MS.gene56412:intron | 45.0% |
| !! | ATTAATTATGTTAAAATTTA+GGG | + | chr4.4:28699781-28699800 | MS.gene56412:intron | 5.0% |
| !! | TATTAATTATGTTAAAATTT+AGG | + | chr4.4:28699780-28699799 | MS.gene56412:intron | 5.0% |
| !!! | TTATTCTTTTTTTTTTTTTT+TGG | - | chr4.4:28700916-28700935 | None:intergenic | 5.0% |
| ATACGCTGCAAAATACGGCG+TGG | + | chr4.4:28701601-28701620 | MS.gene56412:CDS | 50.0% | |
| GAGTGATGCACCATTAGGGT+TGG | - | chr4.4:28699704-28699723 | None:intergenic | 50.0% | |
| GGGGGTCTTAAATAAGACCC+CGG | - | chr4.4:28700212-28700231 | None:intergenic | 50.0% | |
| GGGGTCTTAAATAAGACCCC+GGG | - | chr4.4:28700211-28700230 | None:intergenic | 50.0% | |
| TAGGTTTCTCTGGCTGTCAC+CGG | + | chr4.4:28701545-28701564 | MS.gene56412:intron | 50.0% | |
| TTTGGGGGTCTCTTAAGACC+CGG | + | chr4.4:28700190-28700209 | MS.gene56412:intron | 50.0% | |
| ! | ACGCCGTATTTTGCAGCGTA+TGG | - | chr4.4:28701602-28701621 | None:intergenic | 50.0% |
| ! | CCGTATTTTGCAGCGTATGG+TGG | - | chr4.4:28701599-28701618 | None:intergenic | 50.0% |
| ! | TCTAGCTTCAATTCACCCGC+TGG | + | chr4.4:28700862-28700881 | MS.gene56412:intron | 50.0% |
| ! | TGCGGGTCCCGTTTAAAGTT+GGG | - | chr4.4:28700232-28700251 | None:intergenic | 50.0% |
| !! | CTTTCTGGTGGTTCTGGAAG+TGG | + | chr4.4:28699807-28699826 | MS.gene56412:CDS | 50.0% |
| AGCTTCAATTCACCCGCTGG+TGG | + | chr4.4:28700865-28700884 | MS.gene56412:intron | 55.0% | |
| TACGAGGCTCACCAACGACT+TGG | + | chr4.4:28701568-28701587 | MS.gene56412:CDS | 55.0% | |
| TCAATTCACCCGCTGGTGGA+CGG | + | chr4.4:28700869-28700888 | MS.gene56412:intron | 55.0% | |
| TGGTGTGGGTCCAGTGATAC+TGG | + | chr4.4:28699830-28699849 | MS.gene56412:CDS | 55.0% | |
| TTGGGGGTCTCTTAAGACCC+GGG | + | chr4.4:28700191-28700210 | MS.gene56412:intron | 55.0% | |
| ! | CGGGTCCCGTTTAAAGTTGG+GGG | - | chr4.4:28700230-28700249 | None:intergenic | 55.0% |
| ! | GCGGGTCCCGTTTAAAGTTG+GGG | - | chr4.4:28700231-28700250 | None:intergenic | 55.0% |
| ! | GTGCGGGTCCCGTTTAAAGT+TGG | - | chr4.4:28700233-28700252 | None:intergenic | 55.0% |
| !! | GGTTCTGGAAGTGGTGGTGT+GGG | + | chr4.4:28699816-28699835 | MS.gene56412:CDS | 55.0% |
| !! | TCTGGTGGTTCTGGAAGTGG+TGG | + | chr4.4:28699810-28699829 | MS.gene56412:CDS | 55.0% |
| !! | TGGTTCTGGAAGTGGTGGTG+TGG | + | chr4.4:28699815-28699834 | MS.gene56412:CDS | 55.0% |
| AAAGACCACCGTCCACCAGC+GGG | - | chr4.4:28700880-28700899 | None:intergenic | 60.0% | |
| CAAAGACCACCGTCCACCAG+CGG | - | chr4.4:28700881-28700900 | None:intergenic | 60.0% | |
| TGGGGGTCTCTTAAGACCCG+GGG | + | chr4.4:28700192-28700211 | MS.gene56412:intron | 60.0% | |
| TGGTGGGGAGTCCAAGTCGT+TGG | - | chr4.4:28701582-28701601 | None:intergenic | 60.0% | |
| ! | GGGGCTCTTTCTGGTGGTTC+TGG | + | chr4.4:28699801-28699820 | MS.gene56412:intron | 60.0% |
| ! | GTCGTTGGTGAGCCTCGTAC+CGG | - | chr4.4:28701567-28701586 | None:intergenic | 60.0% |
| CTCTGGCTGTCACCGGTACG+AGG | + | chr4.4:28701552-28701571 | MS.gene56412:CDS | 65.0% | |
| ! | ATTCACCCGCTGGTGGACGG+TGG | + | chr4.4:28700872-28700891 | MS.gene56412:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28699640 | 28701752 | 28699640 | ID=MS.gene56412 |
| chr4.4 | mRNA | 28699640 | 28701752 | 28699640 | ID=MS.gene56412.t1;Parent=MS.gene56412 |
| chr4.4 | exon | 28699640 | 28699712 | 28699640 | ID=MS.gene56412.t1.exon1;Parent=MS.gene56412.t1 |
| chr4.4 | CDS | 28699640 | 28699712 | 28699640 | ID=cds.MS.gene56412.t1;Parent=MS.gene56412.t1 |
| chr4.4 | exon | 28699802 | 28699962 | 28699802 | ID=MS.gene56412.t1.exon2;Parent=MS.gene56412.t1 |
| chr4.4 | CDS | 28699802 | 28699962 | 28699802 | ID=cds.MS.gene56412.t1;Parent=MS.gene56412.t1 |
| chr4.4 | exon | 28701331 | 28701364 | 28701331 | ID=MS.gene56412.t1.exon3;Parent=MS.gene56412.t1 |
| chr4.4 | CDS | 28701331 | 28701364 | 28701331 | ID=cds.MS.gene56412.t1;Parent=MS.gene56412.t1 |
| chr4.4 | exon | 28701548 | 28701641 | 28701548 | ID=MS.gene56412.t1.exon4;Parent=MS.gene56412.t1 |
| chr4.4 | CDS | 28701548 | 28701641 | 28701548 | ID=cds.MS.gene56412.t1;Parent=MS.gene56412.t1 |
| chr4.4 | exon | 28701737 | 28701752 | 28701737 | ID=MS.gene56412.t1.exon5;Parent=MS.gene56412.t1 |
| chr4.4 | CDS | 28701737 | 28701752 | 28701737 | ID=cds.MS.gene56412.t1;Parent=MS.gene56412.t1 |
| Gene Sequence |
| Protein sequence |
