Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58329.t1 | XP_003627626.1 | 98.6 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 8.40E-77 | 296.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58329.t1 | Q9C8S6 | 57.4 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 1.3e-41 | 170.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58329.t1 | G7LCN5 | 98.6 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 6.1e-77 | 296.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene58329 | -0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene04921 | MS.gene58329 | 0.823843 | 1.11E-53 | -1.69E-46 |
| MS.gene050082 | MS.gene58329 | 0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene58329 | -0.819046 | 1.43E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene58329 | -0.808285 | 3.34E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene58329 | 0.851887 | 6.62E-61 | -1.69E-46 |
| MS.gene050496 | MS.gene58329 | -0.820725 | 5.89E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene58329 | -0.814613 | 1.41E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene58329 | -0.828379 | 9.29E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene58329 | -0.814341 | 1.62E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene58329 | -0.811233 | 7.76E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene58329 | -0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene58329 | -0.841054 | 5.99E-58 | -1.69E-46 |
| MS.gene051138 | MS.gene58329 | 0.800626 | 1.32E-48 | -1.69E-46 |
| MS.gene051317 | MS.gene58329 | -0.805345 | 1.40E-49 | -1.69E-46 |
| MS.gene051364 | MS.gene58329 | 0.811572 | 6.55E-51 | -1.69E-46 |
| MS.gene051366 | MS.gene58329 | 0.80716 | 5.79E-50 | -1.69E-46 |
| MS.gene051367 | MS.gene58329 | 0.810904 | 9.14E-51 | -1.69E-46 |
| MS.gene051422 | MS.gene58329 | 0.802348 | 5.85E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene58329 | 0.822671 | 2.09E-53 | -1.69E-46 |
| MS.gene051718 | MS.gene58329 | 0.811521 | 6.72E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene58329 | -0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene58329 | 0.818263 | 2.15E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene58329 | 0.83669 | 8.07E-57 | -1.69E-46 |
| MS.gene053097 | MS.gene58329 | 0.809664 | 1.69E-50 | -1.69E-46 |
| MS.gene053108 | MS.gene58329 | 0.817251 | 3.63E-52 | -1.69E-46 |
| MS.gene053421 | MS.gene58329 | 0.807576 | 4.72E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene58329 | -0.823753 | 1.17E-53 | -1.69E-46 |
| MS.gene055158 | MS.gene58329 | 0.827662 | 1.38E-54 | -1.69E-46 |
| MS.gene055251 | MS.gene58329 | 0.814325 | 1.63E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene58329 | -0.806043 | 9.96E-50 | -1.69E-46 |
| MS.gene055729 | MS.gene58329 | 0.836403 | 9.55E-57 | -1.69E-46 |
| MS.gene055730 | MS.gene58329 | 0.824773 | 6.73E-54 | -1.69E-46 |
| MS.gene055731 | MS.gene58329 | 0.831212 | 1.90E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene58329 | -0.828569 | 8.36E-55 | -1.69E-46 |
| MS.gene055750 | MS.gene58329 | -0.808102 | 3.65E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene58329 | -0.834939 | 2.24E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene58329 | -0.851956 | 6.33E-61 | -1.69E-46 |
| MS.gene056266 | MS.gene58329 | -0.802008 | 6.88E-49 | -1.69E-46 |
| MS.gene056283 | MS.gene58329 | -0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene056387 | MS.gene58329 | -0.80784 | 4.15E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene58329 | -0.848155 | 7.34E-60 | -1.69E-46 |
| MS.gene056618 | MS.gene58329 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene58329 | 0.816664 | 4.92E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene58329 | 0.830331 | 3.12E-55 | -1.69E-46 |
| MS.gene057768 | MS.gene58329 | 0.828105 | 1.08E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene58329 | 0.816703 | 4.82E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene58329 | 0.836375 | 9.71E-57 | -1.69E-46 |
| MS.gene058173 | MS.gene58329 | 0.822525 | 2.26E-53 | -1.69E-46 |
| MS.gene058175 | MS.gene58329 | 0.840351 | 9.16E-58 | -1.69E-46 |
| MS.gene058334 | MS.gene58329 | 0.859301 | 4.55E-63 | -1.69E-46 |
| MS.gene05912 | MS.gene58329 | -0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene059526 | MS.gene58329 | 0.827363 | 1.63E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene58329 | -0.830626 | 2.64E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene58329 | -0.822956 | 1.79E-53 | -1.69E-46 |
| MS.gene06042 | MS.gene58329 | 0.830059 | 3.64E-55 | -1.69E-46 |
| MS.gene060595 | MS.gene58329 | 0.809058 | 2.28E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene58329 | -0.802791 | 4.74E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene58329 | -0.831668 | 1.47E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene58329 | -0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene060823 | MS.gene58329 | 0.866814 | 2.16E-65 | -1.69E-46 |
| MS.gene060982 | MS.gene58329 | -0.845555 | 3.78E-59 | -1.69E-46 |
| MS.gene061044 | MS.gene58329 | 0.82969 | 4.47E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58329.t1 | MTR_8g032300 | 98.649 | 148 | 2 | 0 | 1 | 148 | 1 | 148 | 2.50e-107 | 302 |
| MS.gene58329.t1 | MTR_8g032320 | 83.108 | 148 | 25 | 0 | 1 | 148 | 1 | 148 | 1.16e-92 | 265 |
| MS.gene58329.t1 | MTR_1g008950 | 64.000 | 125 | 45 | 0 | 1 | 125 | 1 | 125 | 2.08e-57 | 175 |
| MS.gene58329.t1 | MTR_5g079880 | 40.645 | 155 | 77 | 5 | 1 | 144 | 1 | 151 | 4.64e-35 | 119 |
| MS.gene58329.t1 | MTR_5g079890 | 39.241 | 158 | 80 | 5 | 1 | 145 | 1 | 155 | 4.49e-32 | 112 |
| MS.gene58329.t1 | MTR_5g079890 | 39.130 | 138 | 71 | 4 | 1 | 125 | 1 | 138 | 8.96e-29 | 103 |
| MS.gene58329.t1 | MTR_7g075960 | 60.377 | 53 | 21 | 0 | 25 | 77 | 1 | 53 | 1.09e-20 | 80.1 |
| MS.gene58329.t1 | MTR_8g030870 | 28.571 | 147 | 93 | 2 | 1 | 135 | 1 | 147 | 2.41e-16 | 72.4 |
| MS.gene58329.t1 | MTR_3g106660 | 32.283 | 127 | 82 | 2 | 3 | 128 | 439 | 562 | 1.03e-13 | 67.4 |
| MS.gene58329.t1 | MTR_5g004800 | 27.119 | 118 | 84 | 2 | 6 | 122 | 15 | 131 | 2.29e-12 | 62.8 |
| MS.gene58329.t1 | MTR_4g115660 | 33.588 | 131 | 81 | 4 | 3 | 131 | 440 | 566 | 2.84e-12 | 63.5 |
| MS.gene58329.t1 | MTR_5g004870 | 29.412 | 119 | 82 | 2 | 6 | 123 | 11 | 128 | 4.72e-12 | 62.0 |
| MS.gene58329.t1 | MTR_2g027100 | 37.363 | 91 | 55 | 2 | 4 | 94 | 6 | 94 | 5.71e-12 | 60.5 |
| MS.gene58329.t1 | MTR_2g030230 | 37.363 | 91 | 55 | 2 | 4 | 94 | 173 | 261 | 3.60e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58329.t1 | AT1G63220 | 57.432 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 9.25e-56 | 172 |
| MS.gene58329.t1 | AT1G63220 | 52.027 | 148 | 56 | 2 | 1 | 148 | 1 | 133 | 1.32e-45 | 145 |
| MS.gene58329.t1 | AT3G55470 | 34.177 | 158 | 90 | 5 | 1 | 147 | 1 | 155 | 1.55e-23 | 90.1 |
| MS.gene58329.t1 | AT3G55470 | 34.591 | 159 | 89 | 6 | 1 | 147 | 1 | 156 | 1.45e-22 | 87.8 |
| MS.gene58329.t1 | AT4G00467 | 30.282 | 142 | 88 | 3 | 1 | 131 | 1 | 142 | 4.67e-15 | 68.9 |
| MS.gene58329.t1 | AT4G00467 | 30.282 | 142 | 88 | 3 | 1 | 131 | 1 | 142 | 7.48e-15 | 68.9 |
| MS.gene58329.t1 | AT5G47710 | 39.785 | 93 | 54 | 2 | 2 | 94 | 4 | 94 | 1.02e-13 | 65.1 |
| MS.gene58329.t1 | AT5G47710 | 39.785 | 93 | 54 | 2 | 2 | 94 | 4 | 94 | 1.02e-13 | 65.1 |
| MS.gene58329.t1 | AT5G47710 | 39.785 | 93 | 54 | 2 | 2 | 94 | 4 | 94 | 1.02e-13 | 65.1 |
| MS.gene58329.t1 | AT5G47710 | 39.785 | 93 | 54 | 2 | 2 | 94 | 4 | 94 | 1.02e-13 | 65.1 |
| MS.gene58329.t1 | AT5G04220 | 32.278 | 158 | 92 | 5 | 2 | 147 | 37 | 191 | 4.51e-13 | 65.5 |
| MS.gene58329.t1 | AT5G04220 | 32.278 | 158 | 92 | 5 | 2 | 147 | 197 | 351 | 9.47e-13 | 64.7 |
| MS.gene58329.t1 | AT5G04220 | 32.278 | 158 | 92 | 5 | 2 | 147 | 259 | 413 | 1.39e-12 | 64.3 |
| MS.gene58329.t1 | AT4G34150 | 26.613 | 124 | 89 | 2 | 6 | 128 | 12 | 134 | 3.94e-12 | 62.0 |
Find 32 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATGTGATCCTCACTTAT+AGG | 0.237814 | 8.2:+65810360 | MS.gene58329:CDS |
| TGAGCTCAATCTAAAGATAA+TGG | 0.346296 | 8.2:+65810571 | MS.gene58329:CDS |
| ACAAGTTTGTAAGAATTCTC+TGG | 0.370783 | 8.2:-65810962 | None:intergenic |
| AGAGAAAATCATTGTCTTCA+AGG | 0.372599 | 8.2:-65809630 | None:intergenic |
| TTATGTGATCCTCACTTATA+GGG | 0.386347 | 8.2:+65810361 | MS.gene58329:CDS |
| AAAATATTGTGGAGAGGTTA+AGG | 0.388006 | 8.2:+65810994 | MS.gene58329:CDS |
| TATAGTGCTGATGATAATCT+TGG | 0.411031 | 8.2:+65810605 | MS.gene58329:CDS |
| GAAATGTCTCATTCCATTGA+GGG | 0.473516 | 8.2:-65810523 | None:intergenic |
| CAATCTAAAGATAATGGAAA+AGG | 0.492449 | 8.2:+65810577 | MS.gene58329:CDS |
| TCTTGAATCACTGTCTCTAA+AGG | 0.495815 | 8.2:-65810929 | None:intergenic |
| GTGCTGGATCCAACCCTCAA+TGG | 0.516268 | 8.2:+65810510 | MS.gene58329:CDS |
| AGAAATGTCTCATTCCATTG+AGG | 0.522164 | 8.2:-65810524 | None:intergenic |
| TGTCTCATTCCATTGAGGGT+TGG | 0.547968 | 8.2:-65810519 | None:intergenic |
| GTGGATGGAAACAATCGGCT+AGG | 0.550623 | 8.2:+65811178 | MS.gene58329:CDS |
| CTATAAGTGAGGATCACATA+AGG | 0.556013 | 8.2:-65810359 | None:intergenic |
| TACAATCAAGAGGAGGAGAC+TGG | 0.557679 | 8.2:+65811156 | MS.gene58329:CDS |
| AAGAGGAGGAGACTGGTGGA+TGG | 0.563015 | 8.2:+65811163 | MS.gene58329:CDS |
| GACTGGTGGATGGAAACAAT+CGG | 0.565129 | 8.2:+65811173 | MS.gene58329:CDS |
| GATCCTCACTTATAGGGCAC+AGG | 0.584755 | 8.2:+65810367 | MS.gene58329:CDS |
| CACAAGAGTACTGTGCAAGA+AGG | 0.593988 | 8.2:+65810392 | MS.gene58329:CDS |
| GAATTCTTACAAACTTGTGA+AGG | 0.595780 | 8.2:+65810967 | MS.gene58329:CDS |
| TGGATGGAAACAATCGGCTA+GGG | 0.602214 | 8.2:+65811179 | MS.gene58329:CDS |
| AATCAAGAGGAGGAGACTGG+TGG | 0.628097 | 8.2:+65811159 | MS.gene58329:CDS |
| TTTAGAGACAGTGATTCAAG+AGG | 0.636421 | 8.2:+65810931 | MS.gene58329:CDS |
| TGAACGGAGTTACAATCAAG+AGG | 0.638924 | 8.2:+65811146 | MS.gene58329:CDS |
| TTAGAGACAGTGATTCAAGA+GGG | 0.640617 | 8.2:+65810932 | MS.gene58329:CDS |
| GCTCCTGTGCCCTATAAGTG+AGG | 0.645283 | 8.2:-65810370 | None:intergenic |
| GGTTGCAGAGAAACTATGAA+CGG | 0.677708 | 8.2:+65811130 | MS.gene58329:intron |
| AATCAGAGAAAGATGCCTCG+TGG | 0.689332 | 8.2:+65809574 | None:intergenic |
| ATATTGTGGAGAGGTTAAGG+TGG | 0.690996 | 8.2:+65810997 | MS.gene58329:CDS |
| ACGGAGTTACAATCAAGAGG+AGG | 0.705054 | 8.2:+65811149 | MS.gene58329:CDS |
| ACAACTTCAAGCGTTCCACG+AGG | 0.769497 | 8.2:-65809589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGAGAAAAA+GGG | - | chr8.2:65810231-65810250 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGAGAAAA+AGG | - | chr8.2:65810232-65810251 | None:intergenic | 10.0% |
| !! | AAGAAAAATATTAGAAAAAC+AGG | - | chr8.2:65811060-65811079 | None:intergenic | 15.0% |
| !!! | AACAATTTTAATAGTCAAAT+TGG | - | chr8.2:65810282-65810301 | None:intergenic | 15.0% |
| !! | ATAATATGATAAAACCAAAC+CGG | - | chr8.2:65810072-65810091 | None:intergenic | 20.0% |
| !! | ATTGTATCATGAATAATATC+AGG | + | chr8.2:65810488-65810507 | MS.gene58329:intron | 20.0% |
| !!! | AATGTTGTAATTTGTAATGT+TGG | + | chr8.2:65810883-65810902 | MS.gene58329:intron | 20.0% |
| !!! | CATGAGTTTTTATTGAATAT+CGG | - | chr8.2:65810730-65810749 | None:intergenic | 20.0% |
| !!! | GAAATTTTTTGATCTTAAGT+TGG | + | chr8.2:65809747-65809766 | MS.gene58329:intron | 20.0% |
| ! | AAAAAAGATCAAGAGTTTAG+AGG | - | chr8.2:65810316-65810335 | None:intergenic | 25.0% |
| ! | GAAATTTATGCATCAATCAA+TGG | + | chr8.2:65809685-65809704 | MS.gene58329:intron | 25.0% |
| ! | GGAACAACAAATATATAGAT+CGG | - | chr8.2:65809774-65809793 | None:intergenic | 25.0% |
| ! | GTGTTGTATGCTATTAAATT+GGG | + | chr8.2:65810105-65810124 | MS.gene58329:intron | 25.0% |
| ! | TAAAAACTCATGATATTGCA+AGG | + | chr8.2:65810738-65810757 | MS.gene58329:intron | 25.0% |
| ! | TAAAACGCACTATCAATTAT+TGG | + | chr8.2:65811109-65811128 | MS.gene58329:intron | 25.0% |
| ! | TAACTGAAAAAGTTGAATGT+TGG | + | chr8.2:65810790-65810809 | MS.gene58329:intron | 25.0% |
| ! | TGTGTTGTATGCTATTAAAT+TGG | + | chr8.2:65810104-65810123 | MS.gene58329:intron | 25.0% |
| ! | TTAAACTCAAGATGAATCAA+AGG | - | chr8.2:65810673-65810692 | None:intergenic | 25.0% |
| ! | TTAAATTGTAGTGAGAAAGT+TGG | - | chr8.2:65810768-65810787 | None:intergenic | 25.0% |
| ! | TTGATTCATCTTGAGTTTAA+TGG | + | chr8.2:65810673-65810692 | MS.gene58329:intron | 25.0% |
| !! | AACTAGTTTACACTTAAAAG+AGG | + | chr8.2:65810856-65810875 | MS.gene58329:intron | 25.0% |
| !!! | AATTGATAGTGCGTTTTAAT+AGG | - | chr8.2:65811107-65811126 | None:intergenic | 25.0% |
| !!! | ATTGATAGTGCGTTTTAATA+GGG | - | chr8.2:65811106-65811125 | None:intergenic | 25.0% |
| !!! | CAATCTAAAGATAATGGAAA+AGG | + | chr8.2:65810577-65810596 | MS.gene58329:CDS | 25.0% |
| AAAATATTGTGGAGAGGTTA+AGG | + | chr8.2:65810994-65811013 | MS.gene58329:CDS | 30.0% | |
| AAACGAACACTATAACAAGA+CGG | - | chr8.2:65809961-65809980 | None:intergenic | 30.0% | |
| AATGTTGACAGCTAAATCAT+TGG | - | chr8.2:65810026-65810045 | None:intergenic | 30.0% | |
| ACAAGTTTGTAAGAATTCTC+TGG | - | chr8.2:65810965-65810984 | None:intergenic | 30.0% | |
| AGACTCAATTAACAAGCTTT+AGG | - | chr8.2:65809795-65809814 | None:intergenic | 30.0% | |
| AGAGAAAATCATTGTCTTCA+AGG | - | chr8.2:65809633-65809652 | None:intergenic | 30.0% | |
| CATCGCTAAAAACGAAAAAA+AGG | - | chr8.2:65810157-65810176 | None:intergenic | 30.0% | |
| CTGATTTAGTGAATCAATTC+AGG | + | chr8.2:65809826-65809845 | MS.gene58329:intron | 30.0% | |
| CTTGTCATAAGATTCAGAAA+TGG | - | chr8.2:65810419-65810438 | None:intergenic | 30.0% | |
| GAATTCTTACAAACTTGTGA+AGG | + | chr8.2:65810967-65810986 | MS.gene58329:CDS | 30.0% | |
| GTGAAGGATGAAAAATATTG+TGG | + | chr8.2:65810983-65811002 | MS.gene58329:CDS | 30.0% | |
| TGAGCTCAATCTAAAGATAA+TGG | + | chr8.2:65810571-65810590 | MS.gene58329:CDS | 30.0% | |
| TTATGTGATCCTCACTTATA+GGG | + | chr8.2:65810361-65810380 | MS.gene58329:CDS | 30.0% | |
| ! | ATCACAAGATTTCACACTTT+TGG | - | chr8.2:65809713-65809732 | None:intergenic | 30.0% |
| ! | CTGAATTGATTCACTAAATC+AGG | - | chr8.2:65809828-65809847 | None:intergenic | 30.0% |
| !! | TATAGTGCTGATGATAATCT+TGG | + | chr8.2:65810605-65810624 | MS.gene58329:CDS | 30.0% |
| AGAAATGTCTCATTCCATTG+AGG | - | chr8.2:65810527-65810546 | None:intergenic | 35.0% | |
| CTATAAGTGAGGATCACATA+AGG | - | chr8.2:65810362-65810381 | None:intergenic | 35.0% | |
| CTTATGTGATCCTCACTTAT+AGG | + | chr8.2:65810360-65810379 | MS.gene58329:CDS | 35.0% | |
| GAAATGTCTCATTCCATTGA+GGG | - | chr8.2:65810526-65810545 | None:intergenic | 35.0% | |
| GAGTACATTGAATACAGTCT+CGG | - | chr8.2:65810186-65810205 | None:intergenic | 35.0% | |
| GGATGAAAAATATTGTGGAG+AGG | + | chr8.2:65810988-65811007 | MS.gene58329:CDS | 35.0% | |
| TCATGAATAATATCAGGTGC+TGG | + | chr8.2:65810494-65810513 | MS.gene58329:intron | 35.0% | |
| TCTTGAATCACTGTCTCTAA+AGG | - | chr8.2:65810932-65810951 | None:intergenic | 35.0% | |
| TTAGAGACAGTGATTCAAGA+GGG | + | chr8.2:65810932-65810951 | MS.gene58329:CDS | 35.0% | |
| TTTAGAGACAGTGATTCAAG+AGG | + | chr8.2:65810931-65810950 | MS.gene58329:CDS | 35.0% | |
| !!! | GTTGTTTTGATCAGTGCTAA+AGG | + | chr8.2:65809607-65809626 | MS.gene58329:CDS | 35.0% |
| ATATTGTGGAGAGGTTAAGG+TGG | + | chr8.2:65810997-65811016 | MS.gene58329:CDS | 40.0% | |
| GGTTGCAGAGAAACTATGAA+CGG | + | chr8.2:65811130-65811149 | MS.gene58329:intron | 40.0% | |
| TAATAGCCCAATTCACGAGT+CGG | + | chr8.2:65809895-65809914 | MS.gene58329:intron | 40.0% | |
| TGAACGGAGTTACAATCAAG+AGG | + | chr8.2:65811146-65811165 | MS.gene58329:CDS | 40.0% | |
| TGTCAACATTGCATAACCCT+AGG | + | chr8.2:65810036-65810055 | MS.gene58329:intron | 40.0% | |
| TTCTATAGCCTCATTACCTC+AGG | - | chr8.2:65811037-65811056 | None:intergenic | 40.0% | |
| ! | CTTTTACACCTGAGGTAATG+AGG | + | chr8.2:65811026-65811045 | MS.gene58329:intron | 40.0% |
| AAACCGGAATACTCATGCCT+AGG | - | chr8.2:65810056-65810075 | None:intergenic | 45.0% | |
| AACCCTAGGCATGAGTATTC+CGG | + | chr8.2:65810050-65810069 | MS.gene58329:intron | 45.0% | |
| AACCGGAATACTCATGCCTA+GGG | - | chr8.2:65810055-65810074 | None:intergenic | 45.0% | |
| ACGGAGTTACAATCAAGAGG+AGG | + | chr8.2:65811149-65811168 | MS.gene58329:CDS | 45.0% | |
| CACCACGACGATGAACAATA+AGG | - | chr8.2:65809921-65809940 | None:intergenic | 45.0% | |
| TACAATCAAGAGGAGGAGAC+TGG | + | chr8.2:65811156-65811175 | MS.gene58329:CDS | 45.0% | |
| TAGGCATGAGTATTCCGGTT+TGG | + | chr8.2:65810055-65810074 | MS.gene58329:intron | 45.0% | |
| TGGATGGAAACAATCGGCTA+GGG | + | chr8.2:65811179-65811198 | MS.gene58329:CDS | 45.0% | |
| TGTCTCATTCCATTGAGGGT+TGG | - | chr8.2:65810522-65810541 | None:intergenic | 45.0% | |
| ! | GACTGGTGGATGGAAACAAT+CGG | + | chr8.2:65811173-65811192 | MS.gene58329:CDS | 45.0% |
| !! | AATAAGGCCGACTCGTGAAT+TGG | - | chr8.2:65809905-65809924 | None:intergenic | 45.0% |
| !! | ATAAGGCCGACTCGTGAATT+GGG | - | chr8.2:65809904-65809923 | None:intergenic | 45.0% |
| !! | CACAAGAGTACTGTGCAAGA+AGG | + | chr8.2:65810392-65810411 | MS.gene58329:CDS | 45.0% |
| AATCAAGAGGAGGAGACTGG+TGG | + | chr8.2:65811159-65811178 | MS.gene58329:CDS | 50.0% | |
| ACAACTTCAAGCGTTCCACG+AGG | - | chr8.2:65809592-65809611 | None:intergenic | 50.0% | |
| GATCCTCACTTATAGGGCAC+AGG | + | chr8.2:65810367-65810386 | MS.gene58329:CDS | 50.0% | |
| GTGGATGGAAACAATCGGCT+AGG | + | chr8.2:65811178-65811197 | MS.gene58329:CDS | 50.0% | |
| !! | GGCCTTATTGTTCATCGTCG+TGG | + | chr8.2:65809916-65809935 | MS.gene58329:intron | 50.0% |
| !! | GGCTCTCACTTTTACACCTG+AGG | + | chr8.2:65811018-65811037 | MS.gene58329:CDS | 50.0% |
| AAGAGGAGGAGACTGGTGGA+TGG | + | chr8.2:65811163-65811182 | MS.gene58329:CDS | 55.0% | |
| GCTCCTGTGCCCTATAAGTG+AGG | - | chr8.2:65810373-65810392 | None:intergenic | 55.0% | |
| GTGCTGGATCCAACCCTCAA+TGG | + | chr8.2:65810510-65810529 | MS.gene58329:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 65809586 | 65811209 | 65809586 | ID=MS.gene58329 |
| chr8.2 | mRNA | 65809586 | 65811209 | 65809586 | ID=MS.gene58329.t1;Parent=MS.gene58329 |
| chr8.2 | exon | 65809586 | 65809652 | 65809586 | ID=MS.gene58329.t1.exon1;Parent=MS.gene58329.t1 |
| chr8.2 | CDS | 65809586 | 65809652 | 65809586 | ID=cds.MS.gene58329.t1;Parent=MS.gene58329.t1 |
| chr8.2 | exon | 65810348 | 65810413 | 65810348 | ID=MS.gene58329.t1.exon2;Parent=MS.gene58329.t1 |
| chr8.2 | CDS | 65810348 | 65810413 | 65810348 | ID=cds.MS.gene58329.t1;Parent=MS.gene58329.t1 |
| chr8.2 | exon | 65810510 | 65810636 | 65810510 | ID=MS.gene58329.t1.exon3;Parent=MS.gene58329.t1 |
| chr8.2 | CDS | 65810510 | 65810636 | 65810510 | ID=cds.MS.gene58329.t1;Parent=MS.gene58329.t1 |
| chr8.2 | exon | 65810925 | 65811039 | 65810925 | ID=MS.gene58329.t1.exon4;Parent=MS.gene58329.t1 |
| chr8.2 | CDS | 65810925 | 65811039 | 65810925 | ID=cds.MS.gene58329.t1;Parent=MS.gene58329.t1 |
| chr8.2 | exon | 65811138 | 65811209 | 65811138 | ID=MS.gene58329.t1.exon5;Parent=MS.gene58329.t1 |
| chr8.2 | CDS | 65811138 | 65811209 | 65811138 | ID=cds.MS.gene58329.t1;Parent=MS.gene58329.t1 |
| Gene Sequence |
| Protein sequence |
