AlfalfaGEDB | MS.gene65435

M. sativa cultivar XinJiangDaYe / MS.gene65435

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65435.t1	PNY03633.1	86.7	294	38	1	4	297	2	294	3.20E-144	521.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65435.t1	A0A2K3NKT1	86.7	294	38	1	4	297	2	294	2.3e-144	521.2

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene65435	0.818845	1.58E-52	-1.69E-46
MS.gene049757	MS.gene65435	0.806547	7.80E-50	-1.69E-46
MS.gene050122	MS.gene65435	0.802904	4.50E-49	-1.69E-46
MS.gene050400	MS.gene65435	0.821176	4.64E-53	-1.69E-46
MS.gene050426	MS.gene65435	-0.80512	1.56E-49	-1.69E-46
MS.gene050670	MS.gene65435	0.859542	3.85E-63	-1.69E-46
MS.gene050971	MS.gene65435	0.812835	3.47E-51	-1.69E-46
MS.gene05105	MS.gene65435	0.817359	3.44E-52	-1.69E-46
MS.gene051255	MS.gene65435	0.834865	2.34E-56	-1.69E-46
MS.gene051360	MS.gene65435	0.863728	2.02E-64	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65435.t1	MTR_4g007910	96.127	284	10	1	14	297	17	299	0.0	535

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene65435.t1	AT1G16080	72.542	295	81	0	3	297	19	313	3.86e-155	436

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Find 88 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACTCCTCTTTCGAGA+TGG	0.539592	4.3:-87698599	MS.gene65435:CDS
AAACCTTTACTCTCAAGCCA+CGG	0.646640	4.3:+87698018	None:intergenic
AAAGATCTTGTTGTGAAACG+TGG	0.716380	4.3:-87698696	MS.gene65435:CDS
AAGACTGATACCAATCCTGA+AGG	0.623096	4.3:-87697928	MS.gene65435:CDS
AAGCGCTGTTGCTGTAAGAG+TGG	0.643492	4.3:+87698845	None:intergenic
AATAGGACCTTCAAAATCAA+CGG	0.556089	4.3:+87698662	None:intergenic
ACATGGATCCTGCTTGCCTT+GGG	0.493651	4.3:+87695864	None:intergenic
ACGGTTCCAACATTCCATTC+TGG	0.447867	4.3:+87698037	None:intergenic
ACTCCTCTTTCGAGATGGAA+AGG	0.612983	4.3:-87698594	MS.gene65435:intron
ACTCTGAATCTGAAATTCTT+GGG	0.469018	4.3:+87698822	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTAGTAAGTCCGATT+TGG	-	chr4.3:87697108-87697127	MS.gene65435:CDS	30.0%
AAATTGATTACCTATGTGTC+TGG	-	chr4.3:87698121-87698140	MS.gene65435:intron	30.0%
AATAGGACCTTCAAAATCAA+CGG	+	chr4.3:87696036-87696055	None:intergenic	30.0%
AATGAGTTGTTACTATCGTT+TGG	-	chr4.3:87696614-87696633	MS.gene65435:intron	30.0%
AATTAAACCCCTCTAATCTT+AGG	+	chr4.3:87697345-87697364	None:intergenic	30.0%
AATTGATTACCTATGTGTCT+GGG	-	chr4.3:87698122-87698141	MS.gene65435:intron	30.0%
AGAGTAAAGGTTTGAAAGAT+GGG	-	chr4.3:87696687-87696706	MS.gene65435:intron	30.0%
ATGAATGAAATGTGATGAGT+TGG	+	chr4.3:87698650-87698669	None:intergenic	30.0%
CCATAAGTATCACAATCTTT+AGG	-	chr4.3:87696206-87696225	MS.gene65435:intron	30.0%
CCATAAGTTTCACATTCTTT+AGG	-	chr4.3:87696145-87696164	MS.gene65435:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	87695822	87698895	87695822	ID=MS.gene65435
chr4.3	mRNA	87695822	87698895	87695822	ID=MS.gene65435.t1;Parent=MS.gene65435
chr4.3	exon	87698595	87698895	87698595	ID=MS.gene65435.t1.exon1;Parent=MS.gene65435.t1
chr4.3	CDS	87698595	87698895	87698595	ID=cds.MS.gene65435.t1;Parent=MS.gene65435.t1
chr4.3	exon	87697855	87698072	87697855	ID=MS.gene65435.t1.exon2;Parent=MS.gene65435.t1
chr4.3	CDS	87697855	87698072	87697855	ID=cds.MS.gene65435.t1;Parent=MS.gene65435.t1
chr4.3	exon	87697095	87697223	87697095	ID=MS.gene65435.t1.exon3;Parent=MS.gene65435.t1
chr4.3	CDS	87697095	87697223	87697095	ID=cds.MS.gene65435.t1;Parent=MS.gene65435.t1
chr4.3	exon	87696333	87696464	87696333	ID=MS.gene65435.t1.exon4;Parent=MS.gene65435.t1
chr4.3	CDS	87696333	87696464	87696333	ID=cds.MS.gene65435.t1;Parent=MS.gene65435.t1
chr4.3	exon	87695822	87695935	87695822	ID=MS.gene65435.t1.exon5;Parent=MS.gene65435.t1
chr4.3	CDS	87695822	87695935	87695822	ID=cds.MS.gene65435.t1;Parent=MS.gene65435.t1

Gene Sequence

>MS.gene65435

ATGTCTTTCTCTCTCTGTAGCTTTTCCTCCACTCTTACAGCAACAGCGCTTCCCAAGAATTTCAGATTCAGAGTCTCTTCCGCCATGGCTTCTACCGTCACCACCACTAAAGTTGCTCCGGCCGTCATTGTCGGCGGTGGAAGAGTTGGAAAAGCTTTAGAAGGTATGGGAGATGGTAAAGATCTTGTTGTGAAACGTGGTGATTCAATTCCCGTTGATTTTGAAGGTCCTATTTTGGTTTGTACTAGAAATGATGATCTTGATTCTGTTCTTCAAACCACTCCTCTTTCGAGATGGAAAGGTATGTAAATGCTCATTTACTTCCATAAGTTTCACATTCTTTAGGCTTGTTTGGATAAAAACAACTTAATTAAGCCATTAGTCCCATAAGTATCACAATCTTTAGGCCTTTTTTGGGTAAACTTCTTAATTAAGCACTTAAAACATAATTGTTTATCATATAAGTGCTTACATGTAAGCTATTTCTATAGCAAAAGATAAAATAAAGTCAAATTGTTTTTATGCGTTGAAAGTTCTATATGGAAGTTCTATATGAGTGTTTGATATTTGTACAATACCGGCACATGTGGTTGTATAAAATCACTGTCACTTTTTCAAGTTAGTATCTGCGTTGATGTTTCTGTCTTTTCTGGTGTCAACACTTGACAAAACTACGAATTAGCACTTCTTAAATGTTGTTTATTATTTTTAATGACATAAAAAGAGGGATTTTTGAGGAACTAATTATGGATTTAGTTTTAATTTTTATTATTTATTGTTGGAAAAAGTACTAATGAGTTGTTACTATCGTTTGGTGTGGCAGATTTGGTGTTTTTCCAGAATGGAATGTTGGAACCGTGGCTTGAGAGTAAAGGTTTGAAAGATGGGAACCAAGTGTTGGCATATTTCGCAGTGTCAAAACTTGGAGAGTCCCCTATTGATGGTAAGACTGATACCAATCCTGAAGGATTGACAGCTGCTTATGGCAAGTGGTCTTTGGCTGTTTCTGAAAGATTGAAAGCTGGAGGCCTCTCTTGCAAGGTAGTATTCATATTTAATTAATCATATCTTGCCAGTAGCCAAGTTTTCTTGTTTTGGTTACATTAATAAAAACTTATTTTACGGGACGGACCTGTTGTTTTCTTTTTGGGAGATATTAGTGTTTTAATTCTCACGTGTTATTGTATTTTTGGATTGCTTAACAATTTTTCTGGTTTGATTACTCGACTATCACCAGAGTTCAGTTGAATCAGAATCTTTAGATGAAAATCAGAAGGCTCATGATTAAATCTTAGTAAGTCCGATTTGGAAAATAAACGTGAATTATGAGTCATTCTATCTTCATTCAACGGTTTCGATATATACAGTGATGGCATGAAATGAGTGTTTTCTCTGACTGCTGAAAATCCATATCCATTAATTTTCTTCTATCTTCGATGTTGGTTTCCTAAGCTTGAAATAGTAACAAATCTTTAGCATGTGAGAAAGTCTAAGTTTATGAATTTCAAGCACGGAAAATTCCTAAGATTAGAGGGGTTTAATTTAACAGAAAAAGCTATTATTTAAAGAACTCGCATTTTATAAATGTTCATTTTTATCAGTGTTTGTTGAGAATTTTTTCATAATTAACTTGAAATAGATAAATCATGTTCTGACCCGTCTTGAACGCCAGGTTTTGGATAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCGCGTCATGGAGGGGTTTCTGTTGGTGTTGTGGAAAAGGAATTCCACCTTGAAGTAAGTAACTTTCCTATTGCCATTTTCTCAAAGTTAATATGCACTTATTTTGTCAATCAACATTTGCTTGGAGTAAAGAAAATTTTATAGCATTCACATGCATGTATTGAATTGTGTCGTTAAGATAGTTGGATATTGCAATCAGTGAGTTGGATTAGGGAAATTCAATGTATTGCCACTCTCTCTATATATACAAATATTGTGTCAGTGTTATCATGTATGGACAGATGCATGTAATTATGTACATTTTTCTTCTTTTGTCTAAAATTAAAAATTCAGTGTTCTTTATCATTTTAGTATTGCTATATGGGCCATATTTTTAATTTTTAAATGGTTTTTACTTTGTCCTACATCAATTCCTGTGTGCAAATAGGTTGTGGGCTCTGACTTTTGGGTGAAACCAAGTTAAAATTAAATATGTTCAAAGTTCAATCTATTTATTCAGTTGTTGGTATCTGTTTGAAGTGTTTGATCTTGTATATAATGAGCTTGTGTTAAAAATTGATTACCTATGTGTCTGGGATAATATCTAAAAACTTTAGAGAACACAGATGAACCATGTTGCAACTATGAAATTGAACATAATGAAAAACACAATCAGAACTGAACTAACTGATTTTGCACTTTCAGTTATGTAGCCTGATAGCAGAACTAGCATCAGCAGCAGCTAGTGAAAAGGGGTTAAAGTTTGAAGAAGCCATGGAAGACCGTTTGTGTGCGTACTCCCGAGCTGTTGCTCACTTTCCCACGGCAGTTAAGGAGGTAAAGATGAAACATTTATAATATTTGCAAATTGCAGACATAGATTCAATAAGTTGCATATAACCATACTGATAACATGAGAATAAATTAGAGGTGTGTACCTGCCATAGTCGTATGATGATCTAGGATCTTTAGTCGACACAAAGAAGAAAAGACTGTGAGAGAATTTCGTTCTTTGTCTGGTGAGGTAGGTGGCTAGGCCAGTCTTATATTTCACAGATGATGGTAGAGAGACCTCGTAGCAGCCTAACCAAAAAATAATCCAACTCATCACATTTCATTCATTAAATAAAGCCCAATTAGAATACATTCATAATTTAGTGCATTATTATAAGTAAGAATTTATAAAGTTCAAAAAAATATTAGTGTTTAATCAATATCTTGGTCATGTTTGCAGTTCAAATGGAGGAATGGTTGGTTTTATGCTCTTTCTGAGAAGGCTATTGCCCAAGGCAAGCAGGATCCATGTCCTATGCATACCAAATGGCTTAAAGAGTTGAAAATTGTATAA

Protein sequence

>MS.gene65435.t1

MSFSLCSFSSTLTATALPKNFRFRVSSAMASTVTTTKVAPAVIVGGGRVGKALEGMGDGKDLVVKRGDSIPVDFEGPILVCTRNDDLDSVLQTTPLSRWKDLVFFQNGMLEPWLESKGLKDGNQVLAYFAVSKLGESPIDGKTDTNPEGLTAAYGKWSLAVSERLKAGGLSCKVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGVVEKEFHLELCSLIAELASAAASEKGLKFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYALSEKAIAQGKQDPCPMHTKWLKELKIV