Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65822.t1 | XP_003598649.1 | 90 | 100 | 10 | 0 | 1 | 100 | 215 | 314 | 1.60E-42 | 181.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65822.t1 | P51074 | 66.0 | 100 | 34 | 0 | 1 | 100 | 215 | 314 | 1.4e-31 | 136.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65822.t1 | G7IW12 | 90.0 | 100 | 10 | 0 | 1 | 100 | 161 | 260 | 1.1e-42 | 181.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04921 | MS.gene65822 | 0.810386 | 1.18E-50 | -1.69E-46 |
| MS.gene04932 | MS.gene65822 | 0.820383 | 7.06E-53 | -1.69E-46 |
| MS.gene049549 | MS.gene65822 | 0.843112 | 1.71E-58 | -1.69E-46 |
| MS.gene049611 | MS.gene65822 | 0.815003 | 1.15E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene65822 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene65822 | -0.810887 | 9.22E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene65822 | -0.80196 | 7.04E-49 | -1.69E-46 |
| MS.gene050720 | MS.gene65822 | 0.806249 | 9.02E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene65822 | -0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene65822 | -0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene65822 | -0.80422 | 2.40E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene65822 | 0.813139 | 2.98E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene65822 | 0.859406 | 4.23E-63 | -1.69E-46 |
| MS.gene051364 | MS.gene65822 | 0.80681 | 6.86E-50 | -1.69E-46 |
| MS.gene051422 | MS.gene65822 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene65822 | 0.818692 | 1.72E-52 | -1.69E-46 |
| MS.gene051973 | MS.gene65822 | 0.81449 | 1.50E-51 | -1.69E-46 |
| MS.gene052211 | MS.gene65822 | 0.858689 | 6.93E-63 | -1.69E-46 |
| MS.gene052212 | MS.gene65822 | 0.804886 | 1.74E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene65822 | 0.821069 | 4.91E-53 | -1.69E-46 |
| MS.gene05244 | MS.gene65822 | 0.803103 | 4.09E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene65822 | 0.899393 | 2.07E-77 | -1.69E-46 |
| MS.gene053406 | MS.gene65822 | 0.809614 | 1.73E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene65822 | 0.844742 | 6.26E-59 | -1.69E-46 |
| MS.gene053421 | MS.gene65822 | 0.805708 | 1.17E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene65822 | 0.833656 | 4.70E-56 | -1.69E-46 |
| MS.gene054146 | MS.gene65822 | 0.820515 | 6.58E-53 | -1.69E-46 |
| MS.gene054181 | MS.gene65822 | 0.826945 | 2.05E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene65822 | 0.803424 | 3.51E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene65822 | -0.830163 | 3.43E-55 | -1.69E-46 |
| MS.gene054742 | MS.gene65822 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene65822 | 0.804368 | 2.23E-49 | -1.69E-46 |
| MS.gene055158 | MS.gene65822 | 0.850433 | 1.70E-60 | -1.69E-46 |
| MS.gene055240 | MS.gene65822 | 0.846759 | 1.78E-59 | -1.69E-46 |
| MS.gene055751 | MS.gene65822 | -0.804106 | 2.53E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene65822 | -0.835503 | 1.62E-56 | -1.69E-46 |
| MS.gene056198 | MS.gene65822 | 0.803755 | 3.00E-49 | -1.69E-46 |
| MS.gene056218 | MS.gene65822 | 0.8509 | 1.26E-60 | -1.69E-46 |
| MS.gene056224 | MS.gene65822 | 0.824456 | 7.99E-54 | -1.69E-46 |
| MS.gene056298 | MS.gene65822 | 0.810732 | 9.96E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene65822 | -0.806073 | 9.82E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene65822 | -0.816691 | 4.85E-52 | -1.69E-46 |
| MS.gene056590 | MS.gene65822 | 0.835037 | 2.12E-56 | -1.69E-46 |
| MS.gene056591 | MS.gene65822 | 0.835007 | 2.16E-56 | -1.69E-46 |
| MS.gene056694 | MS.gene65822 | 0.820512 | 6.60E-53 | -1.69E-46 |
| MS.gene056697 | MS.gene65822 | 0.815256 | 1.01E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene65822 | 0.858784 | 6.49E-63 | -1.69E-46 |
| MS.gene056856 | MS.gene65822 | 0.854691 | 1.04E-61 | -1.69E-46 |
| MS.gene056988 | MS.gene65822 | 0.810815 | 9.55E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene65822 | 0.816999 | 4.14E-52 | -1.69E-46 |
| MS.gene057547 | MS.gene65822 | 0.801677 | 8.04E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene65822 | 0.858539 | 7.69E-63 | -1.69E-46 |
| MS.gene058068 | MS.gene65822 | 0.805978 | 1.03E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene65822 | 0.826715 | 2.33E-54 | -1.69E-46 |
| MS.gene058111 | MS.gene65822 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene058158 | MS.gene65822 | 0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene058171 | MS.gene65822 | 0.824988 | 5.99E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene65822 | 0.818105 | 2.33E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene65822 | 0.828112 | 1.08E-54 | -1.69E-46 |
| MS.gene058334 | MS.gene65822 | 0.819723 | 1.00E-52 | -1.69E-46 |
| MS.gene058452 | MS.gene65822 | 0.818914 | 1.53E-52 | -1.69E-46 |
| MS.gene058603 | MS.gene65822 | 0.855977 | 4.39E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene65822 | -0.802193 | 6.30E-49 | -1.69E-46 |
| MS.gene059526 | MS.gene65822 | 0.800342 | 1.51E-48 | -1.69E-46 |
| MS.gene05960 | MS.gene65822 | 0.813579 | 2.38E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene65822 | -0.802255 | 6.12E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene65822 | 0.821138 | 4.74E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene65822 | 0.840158 | 1.03E-57 | -1.69E-46 |
| MS.gene06000 | MS.gene65822 | -0.811896 | 5.57E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene65822 | 0.800643 | 1.31E-48 | -1.69E-46 |
| MS.gene060405 | MS.gene65822 | 0.806863 | 6.69E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene65822 | -0.817005 | 4.13E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene65822 | -0.810669 | 1.03E-50 | -1.69E-46 |
| MS.gene060823 | MS.gene65822 | 0.822375 | 2.45E-53 | -1.69E-46 |
| MS.gene061044 | MS.gene65822 | 0.823511 | 1.33E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65822.t1 | MTR_3g018925 | 92.784 | 97 | 7 | 0 | 4 | 100 | 13 | 109 | 1.02e-62 | 186 |
| MS.gene65822.t1 | MTR_3g018790 | 90.000 | 100 | 10 | 0 | 1 | 100 | 161 | 260 | 6.36e-61 | 186 |
| MS.gene65822.t1 | MTR_3g018790 | 90.000 | 100 | 10 | 0 | 1 | 100 | 215 | 314 | 1.42e-60 | 187 |
| MS.gene65822.t1 | MTR_8g038220 | 68.000 | 100 | 32 | 0 | 1 | 100 | 215 | 314 | 1.71e-44 | 146 |
| MS.gene65822.t1 | MTR_8g038220 | 68.000 | 100 | 32 | 0 | 1 | 100 | 214 | 313 | 1.78e-44 | 146 |
| MS.gene65822.t1 | MTR_8g038180 | 67.347 | 98 | 32 | 0 | 1 | 98 | 215 | 312 | 1.33e-42 | 141 |
| MS.gene65822.t1 | MTR_8g038210 | 69.000 | 100 | 31 | 0 | 1 | 100 | 214 | 313 | 3.74e-42 | 140 |
| MS.gene65822.t1 | MTR_8g038210 | 69.000 | 100 | 31 | 0 | 1 | 100 | 214 | 313 | 4.35e-42 | 140 |
| MS.gene65822.t1 | MTR_3g018780 | 66.000 | 100 | 34 | 0 | 1 | 100 | 215 | 314 | 7.06e-42 | 139 |
| MS.gene65822.t1 | MTR_0276s0050 | 52.273 | 88 | 42 | 0 | 13 | 100 | 228 | 315 | 6.82e-24 | 92.8 |
| MS.gene65822.t1 | MTR_2g031980 | 44.444 | 99 | 55 | 0 | 1 | 99 | 215 | 313 | 4.95e-22 | 87.8 |
| MS.gene65822.t1 | MTR_5g063670 | 39.785 | 93 | 56 | 0 | 5 | 97 | 220 | 312 | 3.76e-19 | 80.1 |
| MS.gene65822.t1 | MTR_1g033560 | 39.785 | 93 | 56 | 0 | 5 | 97 | 220 | 312 | 5.33e-19 | 79.7 |
| MS.gene65822.t1 | MTR_8g107640 | 41.000 | 100 | 59 | 0 | 1 | 100 | 216 | 315 | 1.56e-18 | 78.2 |
| MS.gene65822.t1 | MTR_1g112520 | 43.956 | 91 | 51 | 0 | 7 | 97 | 222 | 312 | 1.63e-17 | 75.5 |
| MS.gene65822.t1 | MTR_6g071605 | 42.857 | 91 | 52 | 0 | 7 | 97 | 222 | 312 | 1.93e-17 | 75.5 |
| MS.gene65822.t1 | MTR_6g071615 | 41.237 | 97 | 57 | 0 | 1 | 97 | 216 | 312 | 1.13e-16 | 73.2 |
| MS.gene65822.t1 | MTR_8g038150 | 41.111 | 90 | 53 | 0 | 9 | 98 | 227 | 316 | 7.34e-16 | 71.2 |
| MS.gene65822.t1 | MTR_6g071595 | 41.758 | 91 | 53 | 0 | 7 | 97 | 222 | 312 | 8.73e-15 | 68.2 |
| MS.gene65822.t1 | MTR_8g038090 | 50.000 | 72 | 31 | 2 | 30 | 98 | 22 | 91 | 3.06e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65822.t1 | AT5G12380 | 56.701 | 97 | 42 | 0 | 1 | 97 | 215 | 311 | 1.06e-33 | 118 |
| MS.gene65822.t1 | AT5G10220 | 49.474 | 95 | 48 | 0 | 5 | 99 | 222 | 316 | 1.82e-25 | 97.1 |
| MS.gene65822.t1 | AT5G10230 | 45.361 | 97 | 53 | 0 | 1 | 97 | 216 | 312 | 2.78e-23 | 91.3 |
| MS.gene65822.t1 | AT5G65020 | 43.878 | 98 | 54 | 1 | 1 | 97 | 201 | 298 | 1.49e-21 | 86.3 |
| MS.gene65822.t1 | AT5G65020 | 43.878 | 98 | 54 | 1 | 1 | 97 | 216 | 313 | 1.65e-21 | 86.3 |
| MS.gene65822.t1 | AT2G38760 | 42.222 | 90 | 52 | 0 | 8 | 97 | 229 | 318 | 2.23e-20 | 83.6 |
| MS.gene65822.t1 | AT1G35720 | 44.444 | 90 | 50 | 0 | 11 | 100 | 227 | 316 | 5.75e-20 | 82.4 |
| MS.gene65822.t1 | AT1G68090 | 35.052 | 97 | 63 | 0 | 1 | 97 | 217 | 313 | 6.86e-14 | 65.9 |
Find 24 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAAGTCCTTCTCAGCCC+TGG | 0.436107 | 3.2:-9314269 | None:intergenic |
| GAAATTTCTCCTTACTCTGA+TGG | 0.445732 | 3.2:+9314372 | MS.gene65822:CDS |
| TTGCAGAAATTGTCCGATGA+AGG | 0.446312 | 3.2:+9313609 | MS.gene65822:intron |
| ATGGTCATTGATGCAGCTAA+TGG | 0.457405 | 3.2:-9313664 | None:intergenic |
| CTTCTCTCCCCATCAGAGTA+AGG | 0.466949 | 3.2:-9314381 | None:intergenic |
| AAATTTCTCCTTACTCTGAT+GGG | 0.467181 | 3.2:+9314373 | MS.gene65822:CDS |
| CACCAGGGCTGAGAAGGACT+TGG | 0.474764 | 3.2:+9314267 | MS.gene65822:CDS |
| CGCAATGCGATGGAAACTGT+TGG | 0.526003 | 3.2:+9314211 | MS.gene65822:CDS |
| CCATAATAAGTACTATGAAA+AGG | 0.528583 | 3.2:+9313683 | MS.gene65822:CDS |
| GATTGTCACCAGGGCTGAGA+AGG | 0.535488 | 3.2:+9314261 | MS.gene65822:CDS |
| TGGCCACTGCATGCTCAAGT+TGG | 0.542716 | 3.2:-9314327 | None:intergenic |
| CAGGGCTGAGAAGGACTTGG+AGG | 0.543973 | 3.2:+9314270 | MS.gene65822:CDS |
| GGACTTGGAGGACATAAGAA+AGG | 0.590987 | 3.2:+9314282 | MS.gene65822:CDS |
| GTAGGTTCTACGCAATGCGA+TGG | 0.594107 | 3.2:+9314201 | MS.gene65822:intron |
| TCACCCGTGTGATTGTCACC+AGG | 0.598018 | 3.2:+9314251 | MS.gene65822:CDS |
| AATTTCTCCTTACTCTGATG+GGG | 0.599634 | 3.2:+9314374 | MS.gene65822:CDS |
| CAGCCCTGGTGACAATCACA+CGG | 0.607678 | 3.2:-9314255 | None:intergenic |
| AAAGCTATCAGATCCTTCAT+CGG | 0.630218 | 3.2:-9313622 | None:intergenic |
| ACGGGTGAGTACATCCTCAT+CGG | 0.635961 | 3.2:-9314236 | None:intergenic |
| CACCCGTGTGATTGTCACCA+GGG | 0.641846 | 3.2:+9314252 | MS.gene65822:CDS |
| TGTCCAACTTGAGCATGCAG+TGG | 0.682514 | 3.2:+9314324 | MS.gene65822:CDS |
| AGGATCTGATAGCTTTCACA+AGG | 0.686055 | 3.2:+9313629 | MS.gene65822:CDS |
| AGCCCTGGTGACAATCACAC+GGG | 0.718478 | 3.2:-9314254 | None:intergenic |
| GGAAACTGTTGGAACCGATG+AGG | 0.724042 | 3.2:+9314222 | MS.gene65822:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAATTGATTAATCTTAAA+AGG | + | chr3.2:9313746-9313765 | MS.gene65822:intron | 15.0% |
| !!! | ATTCTTTTTTTAATCTTAAC+TGG | - | chr3.2:9313567-9313586 | None:intergenic | 15.0% |
| !!! | TTTGACTTCTTAAAAAAAAA+AGG | + | chr3.2:9314131-9314150 | MS.gene65822:intron | 15.0% |
| !!! | TTTTTTTTAAGAAGTCAAAA+TGG | - | chr3.2:9314130-9314149 | None:intergenic | 15.0% |
| !! | TTGAACTATTTATCCTTAAT+TGG | - | chr3.2:9313460-9313479 | None:intergenic | 20.0% |
| !!! | GGTTTTTTTTTTATGTATGT+TGG | + | chr3.2:9313996-9314015 | MS.gene65822:intron | 20.0% |
| !!! | TTTTTGGACTTAAATTTCAA+AGG | + | chr3.2:9313822-9313841 | MS.gene65822:intron | 20.0% |
| ! | AAAATTATCTCAATCAGACT+TGG | - | chr3.2:9313496-9313515 | None:intergenic | 25.0% |
| ! | ACTTTGAGTCTATTATATGT+AGG | + | chr3.2:9314183-9314202 | MS.gene65822:intron | 25.0% |
| ! | CCATAATAAGTACTATGAAA+AGG | + | chr3.2:9313683-9313702 | MS.gene65822:CDS | 25.0% |
| ! | TGAAATATGTCTTCCAATTA+AGG | + | chr3.2:9313444-9313463 | MS.gene65822:intron | 25.0% |
| !! | CCTTTTCATAGTACTTATTA+TGG | - | chr3.2:9313686-9313705 | None:intergenic | 25.0% |
| !! | TTTTTATGTATGTTGGAAGA+GGG | + | chr3.2:9314003-9314022 | MS.gene65822:intron | 25.0% |
| !!! | CTTTTTAGTAATTTGGAGTT+TGG | - | chr3.2:9313544-9313563 | None:intergenic | 25.0% |
| !!! | TAACTGGCTTTTTAGTAATT+TGG | - | chr3.2:9313551-9313570 | None:intergenic | 25.0% |
| !!! | TTTTTTATGTATGTTGGAAG+AGG | + | chr3.2:9314002-9314021 | MS.gene65822:intron | 25.0% |
| AAATTTCTCCTTACTCTGAT+GGG | + | chr3.2:9314373-9314392 | MS.gene65822:CDS | 30.0% | |
| ACTTAAATTTCAAAGGTGGT+TGG | + | chr3.2:9313829-9313848 | MS.gene65822:intron | 30.0% | |
| TTGGACTTAAATTTCAAAGG+TGG | + | chr3.2:9313825-9313844 | MS.gene65822:intron | 30.0% | |
| TTTACAAGATTGTGTTGTGT+TGG | + | chr3.2:9313881-9313900 | MS.gene65822:intron | 30.0% | |
| !!! | GTAATCTCCTGAAGTTTTTT+TGG | - | chr3.2:9314350-9314369 | None:intergenic | 30.0% |
| AAAGCTATCAGATCCTTCAT+CGG | - | chr3.2:9313625-9313644 | None:intergenic | 35.0% | |
| AATTTCTCCTTACTCTGATG+GGG | + | chr3.2:9314374-9314393 | MS.gene65822:CDS | 35.0% | |
| CGTTAAGTAGCAACATACAA+AGG | - | chr3.2:9314051-9314070 | None:intergenic | 35.0% | |
| GAAATTTCTCCTTACTCTGA+TGG | + | chr3.2:9314372-9314391 | MS.gene65822:CDS | 35.0% | |
| !!! | GTTCTTGACGTTGCTATTTT+GGG | + | chr3.2:9313903-9313922 | MS.gene65822:intron | 35.0% |
| !!! | TTCTTGACGTTGCTATTTTG+GGG | + | chr3.2:9313904-9313923 | MS.gene65822:intron | 35.0% |
| AGGATCTGATAGCTTTCACA+AGG | + | chr3.2:9313629-9313648 | MS.gene65822:CDS | 40.0% | |
| ATGGTCATTGATGCAGCTAA+TGG | - | chr3.2:9313667-9313686 | None:intergenic | 40.0% | |
| TAGTCTAGCATTTCTTGTGC+TGG | + | chr3.2:9314076-9314095 | MS.gene65822:intron | 40.0% | |
| TTGCAGAAATTGTCCGATGA+AGG | + | chr3.2:9313609-9313628 | MS.gene65822:intron | 40.0% | |
| TTTGTGGCAGATTGTGATGT+TGG | + | chr3.2:9313968-9313987 | MS.gene65822:intron | 40.0% | |
| ! | CAGATTGTGATGTTGGTTGA+GGG | + | chr3.2:9313975-9313994 | MS.gene65822:intron | 40.0% |
| !! | TAGCATTTCTTGTGCTGGTT+AGG | + | chr3.2:9314081-9314100 | MS.gene65822:intron | 40.0% |
| !!! | GGTTCTTGACGTTGCTATTT+TGG | + | chr3.2:9313902-9313921 | MS.gene65822:intron | 40.0% |
| !!! | GTGGTGGAAGTTGTTTTTTG+TGG | + | chr3.2:9313952-9313971 | MS.gene65822:intron | 40.0% |
| !!! | TCTTGACGTTGCTATTTTGG+GGG | + | chr3.2:9313905-9313924 | MS.gene65822:intron | 40.0% |
| GCAGTGGCCAAAAAAACTTC+AGG | + | chr3.2:9314340-9314359 | MS.gene65822:CDS | 45.0% | |
| GGACTTGGAGGACATAAGAA+AGG | + | chr3.2:9314282-9314301 | MS.gene65822:CDS | 45.0% | |
| ! | AAGGTGGTTGGTTGTTGTGT+TGG | + | chr3.2:9313841-9313860 | MS.gene65822:intron | 45.0% |
| ! | GCAGATTGTGATGTTGGTTG+AGG | + | chr3.2:9313974-9313993 | MS.gene65822:intron | 45.0% |
| ! | TGTATGTTGGAAGAGGGTGT+TGG | + | chr3.2:9314009-9314028 | MS.gene65822:intron | 45.0% |
| !! | GTATGTTGGAAGAGGGTGTT+GGG | + | chr3.2:9314010-9314029 | MS.gene65822:intron | 45.0% |
| !!! | TTTCAAATATAAATAATTTT+TGG | + | chr3.2:9313806-9313825 | MS.gene65822:intron | 5.0% |
| ACGGGTGAGTACATCCTCAT+CGG | - | chr3.2:9314239-9314258 | None:intergenic | 50.0% | |
| CGCAATGCGATGGAAACTGT+TGG | + | chr3.2:9314211-9314230 | MS.gene65822:CDS | 50.0% | |
| CTTCTCTCCCCATCAGAGTA+AGG | - | chr3.2:9314384-9314403 | None:intergenic | 50.0% | |
| GGAAACTGTTGGAACCGATG+AGG | + | chr3.2:9314222-9314241 | MS.gene65822:CDS | 50.0% | |
| GTAGGTTCTACGCAATGCGA+TGG | + | chr3.2:9314201-9314220 | MS.gene65822:intron | 50.0% | |
| TGTCCAACTTGAGCATGCAG+TGG | + | chr3.2:9314324-9314343 | MS.gene65822:CDS | 50.0% | |
| AGCCCTGGTGACAATCACAC+GGG | - | chr3.2:9314257-9314276 | None:intergenic | 55.0% | |
| CACCCGTGTGATTGTCACCA+GGG | + | chr3.2:9314252-9314271 | MS.gene65822:CDS | 55.0% | |
| CAGCCCTGGTGACAATCACA+CGG | - | chr3.2:9314258-9314277 | None:intergenic | 55.0% | |
| GATTGTCACCAGGGCTGAGA+AGG | + | chr3.2:9314261-9314280 | MS.gene65822:CDS | 55.0% | |
| TCACCCGTGTGATTGTCACC+AGG | + | chr3.2:9314251-9314270 | MS.gene65822:CDS | 55.0% | |
| TGGCCACTGCATGCTCAAGT+TGG | - | chr3.2:9314330-9314349 | None:intergenic | 55.0% | |
| !! | GAGCAACGGATTGTAGGTGG+TGG | + | chr3.2:9313936-9313955 | MS.gene65822:intron | 55.0% |
| !! | GTGTGCGAGCAACGGATTGT+AGG | + | chr3.2:9313930-9313949 | MS.gene65822:intron | 55.0% |
| !! | TGCGAGCAACGGATTGTAGG+TGG | + | chr3.2:9313933-9313952 | MS.gene65822:intron | 55.0% |
| CACCAGGGCTGAGAAGGACT+TGG | + | chr3.2:9314267-9314286 | MS.gene65822:CDS | 60.0% | |
| CAGGGCTGAGAAGGACTTGG+AGG | + | chr3.2:9314270-9314289 | MS.gene65822:CDS | 60.0% | |
| CTCCAAGTCCTTCTCAGCCC+TGG | - | chr3.2:9314272-9314291 | None:intergenic | 60.0% | |
| TGGGGGTTGTGTGCGAGCAA+CGG | + | chr3.2:9313922-9313941 | MS.gene65822:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9313433 | 9314408 | 9313433 | ID=MS.gene65822 |
| chr3.2 | mRNA | 9313433 | 9314408 | 9313433 | ID=MS.gene65822.t1;Parent=MS.gene65822 |
| chr3.2 | exon | 9313433 | 9313441 | 9313433 | ID=MS.gene65822.t1.exon1;Parent=MS.gene65822.t1 |
| chr3.2 | CDS | 9313433 | 9313441 | 9313433 | ID=cds.MS.gene65822.t1;Parent=MS.gene65822.t1 |
| chr3.2 | exon | 9313615 | 9313704 | 9313615 | ID=MS.gene65822.t1.exon2;Parent=MS.gene65822.t1 |
| chr3.2 | CDS | 9313615 | 9313704 | 9313615 | ID=cds.MS.gene65822.t1;Parent=MS.gene65822.t1 |
| chr3.2 | exon | 9314205 | 9314408 | 9314205 | ID=MS.gene65822.t1.exon3;Parent=MS.gene65822.t1 |
| chr3.2 | CDS | 9314205 | 9314408 | 9314205 | ID=cds.MS.gene65822.t1;Parent=MS.gene65822.t1 |
| Gene Sequence |
| Protein sequence |
