Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053181.t1 | XP_013454536.1 | 85.1 | 67 | 9 | 1 | 1 | 66 | 1 | 67 | 3.40E-19 | 105.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053181.t1 | A0A072UFV8 | 85.1 | 67 | 9 | 1 | 1 | 66 | 1 | 67 | 2.4e-19 | 105.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053181 | MS.gene05733 | 0.804804 | 1.81E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene059597 | 0.804715 | 1.89E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene059692 | 0.814146 | 1.79E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene059695 | 0.806206 | 9.20E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene059894 | 0.820182 | 7.85E-53 | -1.69E-46 |
| MS.gene053181 | MS.gene061049 | 0.816599 | 5.09E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene061284 | 0.818881 | 1.56E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene061679 | 0.806852 | 6.73E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene061788 | 0.807417 | 5.11E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene062252 | 0.830587 | 2.70E-55 | -1.69E-46 |
| MS.gene053181 | MS.gene062882 | 0.804414 | 2.18E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene065137 | 0.814249 | 1.70E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene065138 | 0.811502 | 6.78E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene067414 | 0.804329 | 2.28E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene068590 | 0.815715 | 8.02E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene070266 | 0.811393 | 7.16E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene073295 | 0.811996 | 5.29E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene073925 | 0.82489 | 6.32E-54 | -1.69E-46 |
| MS.gene053181 | MS.gene073926 | 0.832399 | 9.67E-56 | -1.69E-46 |
| MS.gene053181 | MS.gene07407 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene08664 | 0.812779 | 3.57E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene08665 | 0.807064 | 6.07E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene20340 | 0.803513 | 3.36E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene23002 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene23368 | 0.807572 | 4.73E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene23923 | 0.83208 | 1.16E-55 | -1.69E-46 |
| MS.gene053181 | MS.gene25171 | 0.8156 | 8.51E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene26990 | 0.804248 | 2.37E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene27725 | 0.816907 | 4.34E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene33248 | 0.809944 | 1.47E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene33855 | 0.804018 | 2.64E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene34231 | 0.824312 | 8.64E-54 | -1.69E-46 |
| MS.gene053181 | MS.gene36048 | 0.815406 | 9.40E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene36648 | 0.810928 | 9.03E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene38508 | 0.80963 | 1.72E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene40233 | 0.818561 | 1.84E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene41558 | 0.81346 | 2.53E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene46177 | 0.822868 | 1.88E-53 | -1.69E-46 |
| MS.gene053181 | MS.gene50651 | 0.810622 | 1.05E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene50731 | 0.812021 | 5.23E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene50741 | 0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene053181 | MS.gene52238 | 0.817719 | 2.85E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene52860 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene53556 | 0.818023 | 2.43E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene54700 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene57299 | 0.814371 | 1.59E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene58160 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene60321 | 0.816176 | 6.33E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene61958 | 0.803991 | 2.68E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene62419 | 0.816174 | 6.33E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene64424 | 0.806187 | 9.29E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene65420 | 0.874951 | 4.52E-68 | -1.69E-46 |
| MS.gene053181 | MS.gene66292 | 0.802283 | 6.04E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene66532 | 0.81637 | 5.73E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene68393 | 0.826284 | 2.95E-54 | -1.69E-46 |
| MS.gene053181 | MS.gene68723 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene053181 | MS.gene68963 | 0.817672 | 2.92E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene69083 | 0.812722 | 3.67E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene69174 | 0.821533 | 3.84E-53 | -1.69E-46 |
| MS.gene053181 | MS.gene69798 | 0.810878 | 9.26E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene70352 | 0.803878 | 2.82E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene71024 | 0.830107 | 3.54E-55 | -1.69E-46 |
| MS.gene053181 | MS.gene71604 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene72242 | 0.811264 | 7.64E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene75021 | 0.813024 | 3.15E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene76306 | 0.826047 | 3.36E-54 | -1.69E-46 |
| MS.gene053181 | MS.gene78406 | 0.807216 | 5.63E-50 | -1.69E-46 |
| MS.gene053181 | MS.gene85579 | 0.830342 | 3.10E-55 | -1.69E-46 |
| MS.gene053181 | MS.gene86413 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene86932 | 0.801848 | 7.42E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene91319 | 0.82657 | 2.52E-54 | -1.69E-46 |
| MS.gene053181 | MS.gene91325 | 0.811498 | 6.79E-51 | -1.69E-46 |
| MS.gene053181 | MS.gene94333 | 0.817246 | 3.64E-52 | -1.69E-46 |
| MS.gene053181 | MS.gene96705 | 0.833921 | 4.04E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053181.t1 | MTR_4g007600 | 63.536 | 181 | 28 | 4 | 1 | 178 | 1 | 146 | 2.66e-32 | 114 |
| MS.gene053181.t1 | MTR_4g007620 | 66.234 | 77 | 24 | 2 | 1 | 76 | 13 | 88 | 1.18e-22 | 89.4 |
| MS.gene053181.t1 | MTR_4g007590 | 52.326 | 86 | 31 | 2 | 1 | 76 | 1 | 86 | 6.46e-19 | 79.0 |
| MS.gene053181.t1 | MTR_4g007570 | 55.263 | 76 | 28 | 2 | 1 | 76 | 1 | 70 | 9.33e-19 | 78.2 |
| MS.gene053181.t1 | MTR_4g007560 | 46.154 | 117 | 29 | 2 | 1 | 110 | 1 | 90 | 2.04e-14 | 67.8 |
| MS.gene053181.t1 | MTR_4g007580 | 52.000 | 75 | 25 | 4 | 1 | 74 | 1 | 65 | 2.22e-12 | 61.6 |
| MS.gene053181.t1 | MTR_4g007570 | 40.000 | 110 | 34 | 3 | 1 | 110 | 1 | 78 | 3.63e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGAGGTGGAAGGGGAGG+AGG | 0.294260 | 4.2:+92218160 | MS.gene053181:CDS |
| ACGATAATAGGAAATTTATA+TGG | 0.302449 | 4.2:+92218031 | MS.gene053181:intron |
| GCAAGCGGAGGAGGTGGATT+TGG | 0.303229 | 4.2:+92218199 | MS.gene053181:CDS |
| GGAGGTGGAAGGGGAGGAGG+TGG | 0.304793 | 4.2:+92218163 | MS.gene053181:CDS |
| GGTGGAGGAAAGGGAGGAGG+TGG | 0.314138 | 4.2:+92218268 | MS.gene053181:CDS |
| GCCTTCATCTTCATTTGAAA+TGG | 0.326206 | 4.2:-92217875 | None:intergenic |
| AGGGGAGGAGGTGGATTTAG+TGG | 0.341806 | 4.2:+92218172 | MS.gene053181:CDS |
| GGTGGAGGAAAGGGAGGAGG+TGG | 0.346499 | 4.2:+92218223 | MS.gene053181:CDS |
| GGAAAGGGAGGAGGTGGAAT+GGG | 0.349740 | 4.2:+92218274 | MS.gene053181:CDS |
| GGAATAGGAGGTGGAGGAAA+GGG | 0.351372 | 4.2:+92218259 | MS.gene053181:CDS |
| GGATTTGGAGGAGGAGTAGC+AGG | 0.351628 | 4.2:+92218310 | MS.gene053181:CDS |
| AAGGGAGGAGGTGGAATGGG+AGG | 0.356510 | 4.2:+92218277 | MS.gene053181:CDS |
| GAACAAGCACATGAGGTTAA+TGG | 0.363274 | 4.2:+92217919 | MS.gene053181:CDS |
| ATAGGAGGTGGAGGAAAGGG+AGG | 0.364127 | 4.2:+92218262 | MS.gene053181:CDS |
| GGATTTGGAGGTGGAGGAAA+GGG | 0.386379 | 4.2:+92218214 | MS.gene053181:CDS |
| TGGAATAGGAGGTGGAGGAA+AGG | 0.387806 | 4.2:+92218258 | MS.gene053181:CDS |
| GGAGGTGGAGGAAAGGGAGG+AGG | 0.395444 | 4.2:+92218265 | MS.gene053181:CDS |
| TTTGGAGGTGGAGGAAAGGG+AGG | 0.396785 | 4.2:+92218217 | MS.gene053181:CDS |
| GGAGGAGGTGGAATGGGAGG+GGG | 0.398655 | 4.2:+92218280 | MS.gene053181:CDS |
| GGATCTCGAGGAGGTGGAAT+AGG | 0.402755 | 4.2:+92218244 | MS.gene053181:CDS |
| TCGACGGGAGGAGGTGGAAG+GGG | 0.410147 | 4.2:+92218154 | MS.gene053181:CDS |
| CATGTGCTTGTTCATTACTC+TGG | 0.410300 | 4.2:-92217909 | None:intergenic |
| ATAGGAAATTTATATGGAAA+TGG | 0.411309 | 4.2:+92218037 | MS.gene053181:intron |
| GAGCATTTGAGATGATCAAT+AGG | 0.414061 | 4.2:-92217849 | None:intergenic |
| AGGAAAGGGAGGAGGTGGAA+TGG | 0.417507 | 4.2:+92218273 | MS.gene053181:CDS |
| GGAGCGGCCGGTGGAATTAT+CGG | 0.418438 | 4.2:+92218334 | MS.gene053181:CDS |
| GGAGGTGGAGGAAAGGGAGG+AGG | 0.423397 | 4.2:+92218220 | MS.gene053181:CDS |
| ACGGGAGGAGGTGGAAGGGG+AGG | 0.424441 | 4.2:+92218157 | MS.gene053181:CDS |
| TGGATTTGGAGGTGGAGGAA+AGG | 0.425116 | 4.2:+92218213 | MS.gene053181:CDS |
| GGTGGGAAGGGATTTGGAGG+AGG | 0.425225 | 4.2:+92218301 | MS.gene053181:CDS |
| GGAGTAGCAGGTGGAGCGGC+CGG | 0.432536 | 4.2:+92218322 | MS.gene053181:CDS |
| GGGAGGAGGTGGAATGGGAG+GGG | 0.432996 | 4.2:+92218279 | MS.gene053181:CDS |
| ATTATCGGTGGTGGAATTGT+TGG | 0.456986 | 4.2:+92218349 | MS.gene053181:CDS |
| GGAGGTGGATCTCGAGGAGG+TGG | 0.481043 | 4.2:+92218238 | MS.gene053181:CDS |
| AGGGAGGAGGTGGAATGGGA+GGG | 0.484959 | 4.2:+92218278 | MS.gene053181:CDS |
| AGTGGAGGTGCAAGCGGAGG+AGG | 0.488977 | 4.2:+92218190 | MS.gene053181:CDS |
| GCCATTTCAAATGAAGATGA+AGG | 0.496545 | 4.2:+92217874 | MS.gene053181:CDS |
| GCCGGTGGAATTATCGGTGG+TGG | 0.507892 | 4.2:+92218340 | MS.gene053181:CDS |
| GGAGGTGCAAGCGGAGGAGG+TGG | 0.508022 | 4.2:+92218193 | MS.gene053181:CDS |
| GGAGGTGGAATAGGAGGTGG+AGG | 0.508513 | 4.2:+92218253 | MS.gene053181:CDS |
| ATCGGTGGTGGAATTGTTGG+CGG | 0.516356 | 4.2:+92218352 | MS.gene053181:CDS |
| TTTCGACGGGAGGAGGTGGA+AGG | 0.517005 | 4.2:+92218152 | MS.gene053181:CDS |
| AGCGGAGGAGGTGGATTTGG+AGG | 0.527084 | 4.2:+92218202 | MS.gene053181:CDS |
| CGAGGAGGTGGAATAGGAGG+TGG | 0.535172 | 4.2:+92218250 | MS.gene053181:CDS |
| GGAGGTGGATTTGGAGGTGG+AGG | 0.536832 | 4.2:+92218208 | MS.gene053181:CDS |
| GCAAATCGCGGTCACAATGG+TGG | 0.542074 | 4.2:+92218382 | MS.gene053181:CDS |
| TTCGACGGGAGGAGGTGGAA+GGG | 0.547737 | 4.2:+92218153 | MS.gene053181:CDS |
| TCTCGAGGAGGTGGAATAGG+AGG | 0.549780 | 4.2:+92218247 | MS.gene053181:CDS |
| AAGGGAGGAGGTGGATCTCG+AGG | 0.551250 | 4.2:+92218232 | MS.gene053181:CDS |
| GTAGCAGGTGGAGCGGCCGG+TGG | 0.556374 | 4.2:+92218325 | MS.gene053181:CDS |
| GGCGGCGCGGTTGCAAATCG+CGG | 0.557081 | 4.2:+92218370 | MS.gene053181:CDS |
| GGAGGAGGTGGATTTGGAGG+TGG | 0.558096 | 4.2:+92218205 | MS.gene053181:CDS |
| AGGAGGAGTAGCAGGTGGAG+CGG | 0.582710 | 4.2:+92218318 | MS.gene053181:CDS |
| CAAATCGCGGTCACAATGGT+GGG | 0.586802 | 4.2:+92218383 | MS.gene053181:CDS |
| TCCTCCCGTCGAAAACCTCA+TGG | 0.608672 | 4.2:-92218143 | None:intergenic |
| CAATGTTGAGACACAAAATG+AGG | 0.609760 | 4.2:-92218448 | None:intergenic |
| GAGTAATGAACAAGCACATG+AGG | 0.616284 | 4.2:+92217912 | MS.gene053181:CDS |
| GGAGGAGGTGGATTTAGTGG+AGG | 0.619290 | 4.2:+92218175 | MS.gene053181:CDS |
| GGATTTAGTGGAGGTGCAAG+CGG | 0.621029 | 4.2:+92218184 | MS.gene053181:CDS |
| TCCACCACCGATAATTCCAC+CGG | 0.625861 | 4.2:-92218341 | None:intergenic |
| TGGTGGAATTGTTGGCGGCG+CGG | 0.634398 | 4.2:+92218357 | MS.gene053181:CDS |
| GGTCACAATGGTGGGTACAA+TGG | 0.639906 | 4.2:+92218391 | MS.gene053181:CDS |
| TTTAGTGGAGGTGCAAGCGG+AGG | 0.644874 | 4.2:+92218187 | MS.gene053181:CDS |
| GTTGCAAATCGCGGTCACAA+TGG | 0.657933 | 4.2:+92218379 | MS.gene053181:CDS |
| TTTGGAGGAGGAGTAGCAGG+TGG | 0.662305 | 4.2:+92218313 | MS.gene053181:CDS |
| GGAGGAGGTGGATCTCGAGG+AGG | 0.673141 | 4.2:+92218235 | MS.gene053181:CDS |
| GCGGCCGGTGGAATTATCGG+TGG | 0.683638 | 4.2:+92218337 | MS.gene053181:CDS |
| GTAACATAGAAGTCTCCACA+AGG | 0.724906 | 4.2:+92218059 | MS.gene053181:CDS |
| ATGAATTGTCTGTTGCCATG+AGG | 0.730410 | 4.2:+92218128 | MS.gene053181:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACGATAATAGGAAATTTATA+TGG | + | chr4.2:92218031-92218050 | MS.gene053181:intron | 20.0% |
| !! | ATAGGAAATTTATATGGAAA+TGG | + | chr4.2:92218037-92218056 | MS.gene053181:intron | 20.0% |
| !!! | AAGTTTTTACTTGTTTGAAA+AGG | - | chr4.2:92217958-92217977 | None:intergenic | 20.0% |
| ! | TTTACTTGTTTGAAAAGGTA+AGG | - | chr4.2:92217953-92217972 | None:intergenic | 25.0% |
| !! | TTGTGTTATTCAACGATAAT+AGG | + | chr4.2:92218019-92218038 | MS.gene053181:intron | 25.0% |
| GAACAACAAAAATGTGATTG+TGG | + | chr4.2:92218084-92218103 | MS.gene053181:CDS | 30.0% | |
| !!! | ATTTTTGTTGTTCAACCTTG+TGG | - | chr4.2:92218077-92218096 | None:intergenic | 30.0% |
| CAATGTTGAGACACAAAATG+AGG | - | chr4.2:92218451-92218470 | None:intergenic | 35.0% | |
| GCCATTTCAAATGAAGATGA+AGG | + | chr4.2:92217874-92217893 | MS.gene053181:CDS | 35.0% | |
| GCCTTCATCTTCATTTGAAA+TGG | - | chr4.2:92217878-92217897 | None:intergenic | 35.0% | |
| ! | GAGCATTTGAGATGATCAAT+AGG | - | chr4.2:92217852-92217871 | None:intergenic | 35.0% |
| ATGAATTGTCTGTTGCCATG+AGG | + | chr4.2:92218128-92218147 | MS.gene053181:CDS | 40.0% | |
| CATGTGCTTGTTCATTACTC+TGG | - | chr4.2:92217912-92217931 | None:intergenic | 40.0% | |
| GAACAAGCACATGAGGTTAA+TGG | + | chr4.2:92217919-92217938 | MS.gene053181:CDS | 40.0% | |
| GAGTAATGAACAAGCACATG+AGG | + | chr4.2:92217912-92217931 | MS.gene053181:CDS | 40.0% | |
| GTAACATAGAAGTCTCCACA+AGG | + | chr4.2:92218059-92218078 | MS.gene053181:CDS | 40.0% | |
| !! | ATTATCGGTGGTGGAATTGT+TGG | + | chr4.2:92218349-92218368 | MS.gene053181:CDS | 40.0% |
| ! | TGTTGCCATGAGGTTTTCGA+CGG | + | chr4.2:92218138-92218157 | MS.gene053181:CDS | 45.0% |
| CAAATCGCGGTCACAATGGT+GGG | + | chr4.2:92218383-92218402 | MS.gene053181:CDS | 50.0% | |
| GGAATAGGAGGTGGAGGAAA+GGG | + | chr4.2:92218259-92218278 | MS.gene053181:CDS | 50.0% | |
| GGATTTGGAGGTGGAGGAAA+GGG | + | chr4.2:92218214-92218233 | MS.gene053181:CDS | 50.0% | |
| GTTGCAAATCGCGGTCACAA+TGG | + | chr4.2:92218379-92218398 | MS.gene053181:CDS | 50.0% | |
| TCCACCACCGATAATTCCAC+CGG | - | chr4.2:92218344-92218363 | None:intergenic | 50.0% | |
| TGGAATAGGAGGTGGAGGAA+AGG | + | chr4.2:92218258-92218277 | MS.gene053181:CDS | 50.0% | |
| TGGATTTGGAGGTGGAGGAA+AGG | + | chr4.2:92218213-92218232 | MS.gene053181:CDS | 50.0% | |
| ! | GGATTTAGTGGAGGTGCAAG+CGG | + | chr4.2:92218184-92218203 | MS.gene053181:CDS | 50.0% |
| ! | GTTGCCATGAGGTTTTCGAC+GGG | + | chr4.2:92218139-92218158 | MS.gene053181:CDS | 50.0% |
| !! | ATCGGTGGTGGAATTGTTGG+CGG | + | chr4.2:92218352-92218371 | MS.gene053181:CDS | 50.0% |
| !! | GGTCACAATGGTGGGTACAA+TGG | + | chr4.2:92218391-92218410 | MS.gene053181:CDS | 50.0% |
| AGGAAAGGGAGGAGGTGGAA+TGG | + | chr4.2:92218273-92218292 | MS.gene053181:CDS | 55.0% | |
| ATAGGAGGTGGAGGAAAGGG+AGG | + | chr4.2:92218262-92218281 | MS.gene053181:CDS | 55.0% | |
| GCAAATCGCGGTCACAATGG+TGG | + | chr4.2:92218382-92218401 | MS.gene053181:CDS | 55.0% | |
| GGAAAGGGAGGAGGTGGAAT+GGG | + | chr4.2:92218274-92218293 | MS.gene053181:CDS | 55.0% | |
| GGATCTCGAGGAGGTGGAAT+AGG | + | chr4.2:92218244-92218263 | MS.gene053181:CDS | 55.0% | |
| GGATTTGGAGGAGGAGTAGC+AGG | + | chr4.2:92218310-92218329 | MS.gene053181:CDS | 55.0% | |
| TCCTCCCGTCGAAAACCTCA+TGG | - | chr4.2:92218146-92218165 | None:intergenic | 55.0% | |
| TCTCGAGGAGGTGGAATAGG+AGG | + | chr4.2:92218247-92218266 | MS.gene053181:CDS | 55.0% | |
| TTTGGAGGAGGAGTAGCAGG+TGG | + | chr4.2:92218313-92218332 | MS.gene053181:CDS | 55.0% | |
| TTTGGAGGTGGAGGAAAGGG+AGG | + | chr4.2:92218217-92218236 | MS.gene053181:CDS | 55.0% | |
| ! | AGGGGAGGAGGTGGATTTAG+TGG | + | chr4.2:92218172-92218191 | MS.gene053181:CDS | 55.0% |
| ! | ATGAGGTTTTCGACGGGAGG+AGG | + | chr4.2:92218145-92218164 | MS.gene053181:CDS | 55.0% |
| ! | GGAGGAGGTGGATTTAGTGG+AGG | + | chr4.2:92218175-92218194 | MS.gene053181:CDS | 55.0% |
| ! | TTTAGTGGAGGTGCAAGCGG+AGG | + | chr4.2:92218187-92218206 | MS.gene053181:CDS | 55.0% |
| AAGGGAGGAGGTGGAATGGG+AGG | + | chr4.2:92218277-92218296 | MS.gene053181:CDS | 60.0% | |
| AAGGGAGGAGGTGGATCTCG+AGG | + | chr4.2:92218232-92218251 | MS.gene053181:CDS | 60.0% | |
| AGGAGGAGTAGCAGGTGGAG+CGG | + | chr4.2:92218318-92218337 | MS.gene053181:CDS | 60.0% | |
| AGGGAGGAGGTGGAATGGGA+GGG | + | chr4.2:92218278-92218297 | MS.gene053181:CDS | 60.0% | |
| CGAGGAGGTGGAATAGGAGG+TGG | + | chr4.2:92218250-92218269 | MS.gene053181:CDS | 60.0% | |
| GCCGGTGGAATTATCGGTGG+TGG | + | chr4.2:92218340-92218359 | MS.gene053181:CDS | 60.0% | |
| GGAGCGGCCGGTGGAATTAT+CGG | + | chr4.2:92218334-92218353 | MS.gene053181:CDS | 60.0% | |
| GGAGGTGGAATAGGAGGTGG+AGG | + | chr4.2:92218253-92218272 | MS.gene053181:CDS | 60.0% | |
| GGTGGGAAGGGATTTGGAGG+AGG | + | chr4.2:92218301-92218320 | MS.gene053181:CDS | 60.0% | |
| TGGTGGAATTGTTGGCGGCG+CGG | + | chr4.2:92218357-92218376 | MS.gene053181:CDS | 60.0% | |
| TTCGACGGGAGGAGGTGGAA+GGG | + | chr4.2:92218153-92218172 | MS.gene053181:CDS | 60.0% | |
| TTTCGACGGGAGGAGGTGGA+AGG | + | chr4.2:92218152-92218171 | MS.gene053181:CDS | 60.0% | |
| ! | AGCGGAGGAGGTGGATTTGG+AGG | + | chr4.2:92218202-92218221 | MS.gene053181:CDS | 60.0% |
| ! | AGGTTTTCGACGGGAGGAGG+TGG | + | chr4.2:92218148-92218167 | MS.gene053181:CDS | 60.0% |
| ! | GCAAGCGGAGGAGGTGGATT+TGG | + | chr4.2:92218199-92218218 | MS.gene053181:CDS | 60.0% |
| ! | GCCATGAGGTTTTCGACGGG+AGG | + | chr4.2:92218142-92218161 | MS.gene053181:CDS | 60.0% |
| ! | GGAGGAGGTGGATTTGGAGG+TGG | + | chr4.2:92218205-92218224 | MS.gene053181:CDS | 60.0% |
| ! | GGAGGTGGATTTGGAGGTGG+AGG | + | chr4.2:92218208-92218227 | MS.gene053181:CDS | 60.0% |
| GAGGTGGAATGGGAGGGGGT+GGG | + | chr4.2:92218284-92218303 | MS.gene053181:CDS | 65.0% | |
| GCGGCCGGTGGAATTATCGG+TGG | + | chr4.2:92218337-92218356 | MS.gene053181:CDS | 65.0% | |
| GGAATGGGAGGGGGTGGGAA+GGG | + | chr4.2:92218289-92218308 | MS.gene053181:CDS | 65.0% | |
| GGAGGAGGTGGAATGGGAGG+GGG | + | chr4.2:92218280-92218299 | MS.gene053181:CDS | 65.0% | |
| GGAGGAGGTGGATCTCGAGG+AGG | + | chr4.2:92218235-92218254 | MS.gene053181:CDS | 65.0% | |
| GGAGGGGGTGGGAAGGGATT+TGG | + | chr4.2:92218295-92218314 | MS.gene053181:CDS | 65.0% | |
| GGAGGTGGAGGAAAGGGAGG+AGG | + | chr4.2:92218220-92218239 | MS.gene053181:CDS | 65.0% | |
| GGAGGTGGATCTCGAGGAGG+TGG | + | chr4.2:92218238-92218257 | MS.gene053181:CDS | 65.0% | |
| GGGAGGAGGTGGAATGGGAG+GGG | + | chr4.2:92218279-92218298 | MS.gene053181:CDS | 65.0% | |
| GGGGGTGGGAAGGGATTTGG+AGG | + | chr4.2:92218298-92218317 | MS.gene053181:CDS | 65.0% | |
| GGTGGAGGAAAGGGAGGAGG+TGG | + | chr4.2:92218223-92218242 | MS.gene053181:CDS | 65.0% | |
| TCGACGGGAGGAGGTGGAAG+GGG | + | chr4.2:92218154-92218173 | MS.gene053181:CDS | 65.0% | |
| TGGAATGGGAGGGGGTGGGA+AGG | + | chr4.2:92218288-92218307 | MS.gene053181:CDS | 65.0% | |
| ! | AGTGGAGGTGCAAGCGGAGG+AGG | + | chr4.2:92218190-92218209 | MS.gene053181:CDS | 65.0% |
| ACGGGAGGAGGTGGAAGGGG+AGG | + | chr4.2:92218157-92218176 | MS.gene053181:CDS | 70.0% | |
| GGAGGAGGTGGAAGGGGAGG+AGG | + | chr4.2:92218160-92218179 | MS.gene053181:CDS | 70.0% | |
| GGAGGTGGAAGGGGAGGAGG+TGG | + | chr4.2:92218163-92218182 | MS.gene053181:CDS | 70.0% | |
| GGAGGTGGAATGGGAGGGGG+TGG | + | chr4.2:92218283-92218302 | MS.gene053181:CDS | 70.0% | |
| GGAGTAGCAGGTGGAGCGGC+CGG | + | chr4.2:92218322-92218341 | MS.gene053181:CDS | 70.0% | |
| GGCGGCGCGGTTGCAAATCG+CGG | + | chr4.2:92218370-92218389 | MS.gene053181:CDS | 70.0% | |
| ! | GGAGGTGCAAGCGGAGGAGG+TGG | + | chr4.2:92218193-92218212 | MS.gene053181:CDS | 70.0% |
| GTAGCAGGTGGAGCGGCCGG+TGG | + | chr4.2:92218325-92218344 | MS.gene053181:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 92217823 | 92218471 | 92217823 | ID=MS.gene053181 |
| chr4.2 | mRNA | 92217823 | 92218471 | 92217823 | ID=MS.gene053181.t1;Parent=MS.gene053181 |
| chr4.2 | exon | 92217823 | 92217940 | 92217823 | ID=MS.gene053181.t1.exon1;Parent=MS.gene053181.t1 |
| chr4.2 | CDS | 92217823 | 92217940 | 92217823 | ID=cds.MS.gene053181.t1;Parent=MS.gene053181.t1 |
| chr4.2 | exon | 92218041 | 92218471 | 92218041 | ID=MS.gene053181.t1.exon2;Parent=MS.gene053181.t1 |
| chr4.2 | CDS | 92218041 | 92218471 | 92218041 | ID=cds.MS.gene053181.t1;Parent=MS.gene053181.t1 |
| Gene Sequence |
| Protein sequence |
