Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66544.t1 | XP_013452478.1 | 95.3 | 364 | 17 | 0 | 76 | 439 | 171 | 534 | 1.20E-200 | 709.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66544.t1 | Q9P7G4 | 40.2 | 179 | 96 | 4 | 257 | 426 | 146 | 322 | 2.8e-28 | 127.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66544.t1 | A0A072UAP6 | 95.3 | 364 | 17 | 0 | 76 | 439 | 171 | 534 | 8.9e-201 | 709.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene66544 | 0.816895 | 4.37E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene66544 | 0.803139 | 4.02E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene66544 | 0.824147 | 9.45E-54 | -1.69E-46 |
| MS.gene049283 | MS.gene66544 | 0.802011 | 6.87E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene66544 | 0.804884 | 1.74E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene66544 | -0.807482 | 4.95E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene66544 | 0.814895 | 1.22E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene66544 | 0.800081 | 1.70E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene66544 | 0.840373 | 9.04E-58 | -1.69E-46 |
| MS.gene050442 | MS.gene66544 | 0.800371 | 1.49E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene66544 | 0.800763 | 1.24E-48 | -1.69E-46 |
| MS.gene050737 | MS.gene66544 | 0.808339 | 3.25E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene66544 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene66544 | 0.80128 | 9.70E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene66544 | 0.839888 | 1.21E-57 | -1.69E-46 |
| MS.gene050953 | MS.gene66544 | 0.816459 | 5.47E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene66544 | 0.814271 | 1.68E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene66544 | 0.806726 | 7.15E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene66544 | 0.81326 | 2.80E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene66544 | 0.808178 | 3.52E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene66544 | 0.801677 | 8.04E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene66544 | 0.811639 | 6.33E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene66544 | 0.816589 | 5.12E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene66544 | 0.81823 | 2.18E-52 | -1.69E-46 |
| MS.gene052677 | MS.gene66544 | 0.821325 | 4.29E-53 | -1.69E-46 |
| MS.gene052855 | MS.gene66544 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene66544 | 0.814103 | 1.83E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene66544 | 0.815307 | 9.89E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene66544 | 0.80778 | 4.28E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene66544 | 0.823246 | 1.54E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene66544 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene66544 | 0.824661 | 7.15E-54 | -1.69E-46 |
| MS.gene054405 | MS.gene66544 | 0.803939 | 2.74E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene66544 | 0.8082 | 3.48E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene66544 | 0.832991 | 6.89E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene66544 | 0.815673 | 8.20E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene66544 | 0.810181 | 1.31E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene66544 | 0.810863 | 9.33E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene66544 | 0.814285 | 1.67E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene66544 | 0.841494 | 4.59E-58 | -1.69E-46 |
| MS.gene055841 | MS.gene66544 | 0.80245 | 5.58E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene66544 | 0.808324 | 3.27E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene66544 | 0.828898 | 6.96E-55 | -1.69E-46 |
| MS.gene056480 | MS.gene66544 | 0.808986 | 2.36E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene66544 | 0.818132 | 2.30E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene66544 | 0.812737 | 3.65E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene66544 | 0.829359 | 5.38E-55 | -1.69E-46 |
| MS.gene056873 | MS.gene66544 | 0.816846 | 4.48E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene66544 | 0.806584 | 7.66E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene66544 | 0.844936 | 5.55E-59 | -1.69E-46 |
| MS.gene057855 | MS.gene66544 | 0.814242 | 1.70E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene66544 | 0.816602 | 5.08E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene66544 | 0.829599 | 4.70E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene66544 | 0.824184 | 9.26E-54 | -1.69E-46 |
| MS.gene058081 | MS.gene66544 | 0.801512 | 8.69E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene66544 | 0.801826 | 7.50E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene66544 | 0.803685 | 3.10E-49 | -1.69E-46 |
| MS.gene058427 | MS.gene66544 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene66544 | 0.81337 | 2.65E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene66544 | 0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene66544 | 0.824309 | 8.66E-54 | -1.69E-46 |
| MS.gene059283 | MS.gene66544 | 0.847236 | 1.31E-59 | -1.69E-46 |
| MS.gene05979 | MS.gene66544 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene66544 | 0.829678 | 4.50E-55 | -1.69E-46 |
| MS.gene060011 | MS.gene66544 | 0.826466 | 2.67E-54 | -1.69E-46 |
| MS.gene060167 | MS.gene66544 | 0.814411 | 1.56E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene66544 | 0.817588 | 3.05E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene66544 | 0.843984 | 1.00E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene66544 | 0.801162 | 1.03E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene66544 | 0.830532 | 2.79E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene66544 | 0.814571 | 1.44E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene66544 | 0.81272 | 3.68E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66544.t1 | MTR_6g463380 | 93.850 | 439 | 27 | 0 | 1 | 439 | 96 | 534 | 0.0 | 857 |
| MS.gene66544.t1 | MTR_3g006860 | 92.027 | 439 | 35 | 0 | 1 | 439 | 92 | 530 | 0.0 | 834 |
| MS.gene66544.t1 | MTR_6g463380 | 93.036 | 359 | 25 | 0 | 1 | 359 | 96 | 454 | 0.0 | 699 |
| MS.gene66544.t1 | MTR_6g463380 | 93.277 | 357 | 24 | 0 | 1 | 357 | 96 | 452 | 0.0 | 696 |
| MS.gene66544.t1 | MTR_6g079410 | 49.220 | 449 | 136 | 12 | 45 | 431 | 46 | 464 | 5.08e-127 | 376 |
| MS.gene66544.t1 | MTR_6g061650 | 53.191 | 329 | 105 | 8 | 109 | 433 | 32 | 315 | 3.82e-104 | 312 |
| MS.gene66544.t1 | MTR_6g006850 | 35.714 | 322 | 157 | 7 | 122 | 436 | 29 | 307 | 5.89e-54 | 182 |
| MS.gene66544.t1 | MTR_1g014390 | 47.208 | 197 | 74 | 3 | 237 | 430 | 119 | 288 | 4.15e-50 | 172 |
| MS.gene66544.t1 | MTR_6g006710 | 33.555 | 301 | 119 | 6 | 142 | 436 | 68 | 293 | 4.45e-42 | 150 |
| MS.gene66544.t1 | MTR_1g029560 | 41.667 | 204 | 94 | 5 | 239 | 436 | 18 | 202 | 3.27e-40 | 143 |
| MS.gene66544.t1 | MTR_1g012010 | 45.833 | 120 | 62 | 1 | 240 | 359 | 124 | 240 | 2.31e-25 | 104 |
| MS.gene66544.t1 | MTR_1g012015 | 60.000 | 75 | 27 | 1 | 359 | 430 | 23 | 97 | 2.56e-24 | 97.1 |
| MS.gene66544.t1 | MTR_7g025575 | 59.091 | 88 | 29 | 2 | 358 | 439 | 13 | 99 | 6.27e-24 | 96.3 |
| MS.gene66544.t1 | MTR_6g080120 | 68.000 | 50 | 14 | 1 | 358 | 407 | 1 | 48 | 1.91e-13 | 65.5 |
| MS.gene66544.t1 | MTR_6g079950 | 41.791 | 67 | 38 | 1 | 370 | 436 | 1 | 66 | 6.69e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66544.t1 | AT5G51740 | 57.373 | 434 | 159 | 6 | 10 | 439 | 31 | 442 | 1.14e-174 | 496 |
| MS.gene66544.t1 | AT5G51740 | 57.373 | 434 | 159 | 6 | 10 | 439 | 74 | 485 | 2.45e-174 | 497 |
| MS.gene66544.t1 | AT5G51740 | 53.276 | 351 | 140 | 4 | 10 | 357 | 74 | 403 | 1.51e-128 | 377 |
Find 96 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAGAGGTTAGGGAAAA+TGG | 0.112500 | 6.2:+62754429 | MS.gene66544:CDS |
| ATGAGGTTCTTGATGATAAA+TGG | 0.155660 | 6.2:+62755043 | MS.gene66544:CDS |
| TCCAAAGGTGTTAGCTTTAA+TGG | 0.157644 | 6.2:+62754484 | MS.gene66544:CDS |
| TGGATTGAATTGGGAGATTT+TGG | 0.167567 | 6.2:+62755128 | MS.gene66544:CDS |
| TGTCAAGGTGGTAACTTTAA+TGG | 0.209828 | 6.2:+62754385 | MS.gene66544:CDS |
| TTGAGATAAATAAGAATATT+GGG | 0.260342 | 6.2:+62754455 | MS.gene66544:CDS |
| TTTGAGATAAATAAGAATAT+TGG | 0.272846 | 6.2:+62754454 | MS.gene66544:CDS |
| ATCCTAACTCTCACACTTTC+AGG | 0.275058 | 6.2:-62754847 | None:intergenic |
| GCAGAGATAGCAACTATTAT+TGG | 0.282923 | 6.2:+62755240 | MS.gene66544:CDS |
| GGTTCAGAAGAGTAGGAAAA+AGG | 0.286020 | 6.2:+62755065 | MS.gene66544:CDS |
| AAATGTGTTCGCTTCGTATA+AGG | 0.292798 | 6.2:-62754727 | None:intergenic |
| CGCATTTGGATGGATTGAAT+TGG | 0.304915 | 6.2:+62755118 | MS.gene66544:CDS |
| AGCTTCTTCTCCATCTCTTT+CGG | 0.314424 | 6.2:-62754760 | None:intergenic |
| CCCAACTTCTCGTAGACTTT+AGG | 0.315746 | 6.2:-62758081 | None:intergenic |
| CCATCCAAATGCGACGTATA+AGG | 0.317832 | 6.2:-62755108 | None:intergenic |
| TGGTGTTGAAGGATTTCTTT+AGG | 0.322830 | 6.2:+62758239 | MS.gene66544:CDS |
| TCTTCAATTCCTAAGAGGTT+AGG | 0.330856 | 6.2:+62754421 | MS.gene66544:CDS |
| TGGGAAGATAGTCGTGTTTA+CGG | 0.331309 | 6.2:+62755191 | MS.gene66544:CDS |
| CCAAAGGTGTTAGCTTTAAT+GGG | 0.339118 | 6.2:+62754485 | MS.gene66544:CDS |
| GACATAGTGTTGACAATATC+AGG | 0.345694 | 6.2:-62755709 | None:intergenic |
| ACACTTTCAGGATGCATTGC+AGG | 0.348683 | 6.2:-62754835 | None:intergenic |
| GCAACCTTATACGTCGCATT+TGG | 0.350333 | 6.2:+62755104 | MS.gene66544:CDS |
| GTCAAGGTGGTAACTTTAAT+GGG | 0.361635 | 6.2:+62754386 | MS.gene66544:CDS |
| AAGAAAACGAGCAGAATTAC+TGG | 0.372401 | 6.2:+62758158 | MS.gene66544:CDS |
| CCCATTAAAGCTAACACCTT+TGG | 0.373919 | 6.2:-62754485 | None:intergenic |
| CTTCAATTCCTAAGAGGTTA+GGG | 0.379836 | 6.2:+62754422 | MS.gene66544:CDS |
| ATTGGTATAGTGGTTGGTTC+AGG | 0.382197 | 6.2:+62754664 | MS.gene66544:CDS |
| CCTAAGAGGTTAGGGAAAAT+GGG | 0.389385 | 6.2:+62754430 | MS.gene66544:CDS |
| AAGAGATGGAGAAGAAGCTT+GGG | 0.391537 | 6.2:+62754764 | MS.gene66544:CDS |
| CATCTTCTCAGCACTGTGTC+TGG | 0.400313 | 6.2:-62755632 | None:intergenic |
| GCTTCAGAAAATTCTGTGTT+TGG | 0.406389 | 6.2:+62754943 | MS.gene66544:CDS |
| CATCAAGAACCTCATCTTCC+CGG | 0.410729 | 6.2:-62755035 | None:intergenic |
| AAAATTGGTTTCAGAATCCT+AGG | 0.413695 | 6.2:+62754632 | MS.gene66544:CDS |
| AAGGGAAAGTTGGAGGGAAT+TGG | 0.419080 | 6.2:+62755010 | MS.gene66544:CDS |
| GCATTTGGATGGATTGAATT+GGG | 0.421702 | 6.2:+62755119 | MS.gene66544:CDS |
| GGGAAGATAGTCGTGTTTAC+GGG | 0.423649 | 6.2:+62755192 | MS.gene66544:CDS |
| AGAGAAGGACATGGTGTTGA+AGG | 0.427494 | 6.2:+62758228 | MS.gene66544:CDS |
| ACTGAAAATGAAGGGAAAGT+TGG | 0.438682 | 6.2:+62755000 | MS.gene66544:CDS |
| GTTGAAGAGAGGGTTGAGTA+AGG | 0.449933 | 6.2:+62754894 | MS.gene66544:CDS |
| TATTTCGCCACTCATCCATC+TGG | 0.453067 | 6.2:+62758135 | MS.gene66544:CDS |
| GCATGTTATGATTGGTATAG+TGG | 0.453566 | 6.2:+62754654 | MS.gene66544:CDS |
| TGAGGTTCTTGATGATAAAT+GGG | 0.460396 | 6.2:+62755044 | MS.gene66544:CDS |
| TTTGGTGGTGAAGGATCCTA+TGG | 0.460965 | 6.2:+62755146 | MS.gene66544:CDS |
| ACCTAAAGTCTACGAGAAGT+TGG | 0.465177 | 6.2:+62758080 | MS.gene66544:CDS |
| AATCCTAGGCATGTTATGAT+TGG | 0.472024 | 6.2:+62754646 | MS.gene66544:CDS |
| AGAATTACTGGCTCAAGCTC+AGG | 0.477979 | 6.2:+62758170 | MS.gene66544:CDS |
| AATAATTACCTTCTGGAGAA+AGG | 0.480591 | 6.2:-62755751 | None:intergenic |
| AGAAGATGACAAAGAATATG+TGG | 0.484136 | 6.2:+62755647 | MS.gene66544:CDS |
| AAGTTGGAGGGAATTGGCAC+CGG | 0.485472 | 6.2:+62755016 | MS.gene66544:CDS |
| AAAGAGATGGAGAAGAAGCT+TGG | 0.487235 | 6.2:+62754763 | MS.gene66544:CDS |
| CCTTATACGTCGCATTTGGA+TGG | 0.493369 | 6.2:+62755108 | MS.gene66544:CDS |
| AATAATAAGAATATTAGAGT+TGG | 0.496382 | 6.2:+62754361 | MS.gene66544:CDS |
| ATCTAAAAGATTAGAATCGC+CGG | 0.501471 | 6.2:-62758112 | None:intergenic |
| GTTATGATTGGTATAGTGGT+TGG | 0.507924 | 6.2:+62754658 | MS.gene66544:CDS |
| CCTAAAGTCTACGAGAAGTT+GGG | 0.509175 | 6.2:+62758081 | MS.gene66544:CDS |
| ATCCTGAAAGTGTGAGAGTT+AGG | 0.512578 | 6.2:+62754845 | MS.gene66544:CDS |
| AATGCATTGACTGAAAATGA+AGG | 0.512873 | 6.2:+62754991 | MS.gene66544:CDS |
| CTTCTATTAGTTGCATCTGC+CGG | 0.514431 | 6.2:+62758039 | MS.gene66544:CDS |
| TTATCGAAGCGTTGAAGAGA+GGG | 0.518421 | 6.2:+62754884 | MS.gene66544:CDS |
| AATATTAGAGTTGGTTGTCA+AGG | 0.519986 | 6.2:+62754370 | MS.gene66544:CDS |
| ATAAATGGGTTCAGAAGAGT+AGG | 0.531439 | 6.2:+62755058 | MS.gene66544:CDS |
| AGTTGGAGGGAATTGGCACC+GGG | 0.532756 | 6.2:+62755017 | MS.gene66544:CDS |
| TTTAGGAGATTAGAGAAAAG+GGG | 0.534498 | 6.2:+62754529 | MS.gene66544:CDS |
| TGAGATAAATAAGAATATTG+GGG | 0.535578 | 6.2:+62754456 | MS.gene66544:CDS |
| ATTAGAGTTGGTTGTCAAGG+TGG | 0.541340 | 6.2:+62754373 | MS.gene66544:CDS |
| CTTCCCACCAGGTAAGCAAA+AGG | 0.542507 | 6.2:-62755175 | None:intergenic |
| GATAAATAAGAATATTGGGG+TGG | 0.543034 | 6.2:+62754459 | MS.gene66544:CDS |
| AATATTGGGGTGGGTTCCAA+AGG | 0.550451 | 6.2:+62754469 | MS.gene66544:CDS |
| TGCCACACGTGGATCATAGC+CGG | 0.551488 | 6.2:-62758058 | None:intergenic |
| TACGGCTACCTTTCTCCAGA+AGG | 0.558879 | 6.2:+62755743 | MS.gene66544:CDS |
| GAAAATGAAGGGAAAGTTGG+AGG | 0.559808 | 6.2:+62755003 | MS.gene66544:CDS |
| GAGCGAGTTTGAGAAGATGA+AGG | 0.561104 | 6.2:+62754789 | MS.gene66544:CDS |
| AAGCAAAAGGCATTAACCAT+AGG | 0.561244 | 6.2:-62755162 | None:intergenic |
| ATAAATAAGAATATTGGGGT+GGG | 0.563572 | 6.2:+62754460 | MS.gene66544:CDS |
| ATACCAATCATAACATGCCT+AGG | 0.568681 | 6.2:-62754649 | None:intergenic |
| GAAATTGAAGCTGATTACAT+TGG | 0.569179 | 6.2:+62758015 | MS.gene66544:CDS |
| GGTTGAGTAAGGAGAATGTG+TGG | 0.571308 | 6.2:+62754905 | MS.gene66544:CDS |
| CTGTGTTTGGTGAAGAAAGT+GGG | 0.573793 | 6.2:+62754956 | MS.gene66544:CDS |
| ACTGGCTCAAGCTCAGGTGA+TGG | 0.577941 | 6.2:+62758176 | MS.gene66544:CDS |
| TCTGTGTTTGGTGAAGAAAG+TGG | 0.579845 | 6.2:+62754955 | MS.gene66544:CDS |
| GAGTTTGAGAAGATGAAGGC+GGG | 0.581578 | 6.2:+62754793 | MS.gene66544:CDS |
| ATGCATTGACTGAAAATGAA+GGG | 0.590623 | 6.2:+62754992 | MS.gene66544:CDS |
| AGCAACTATTATTGGACATG+AGG | 0.602186 | 6.2:+62755248 | MS.gene66544:CDS |
| ATTATCGAAGCGTTGAAGAG+AGG | 0.605086 | 6.2:+62754883 | MS.gene66544:CDS |
| CGAGTTTGAGAAGATGAAGG+CGG | 0.609178 | 6.2:+62754792 | MS.gene66544:CDS |
| GAAGATGACAAAGAATATGT+GGG | 0.612484 | 6.2:+62755648 | MS.gene66544:CDS |
| GAATTGGCACCGGGAAGATG+AGG | 0.612493 | 6.2:+62755026 | MS.gene66544:CDS |
| AAAATGAAGGGAAAGTTGGA+GGG | 0.619844 | 6.2:+62755004 | MS.gene66544:CDS |
| TGATTAGGTTGGACATGCTG+TGG | 0.626030 | 6.2:+62755609 | MS.gene66544:intron |
| AACACGACTATCTTCCCACC+AGG | 0.637312 | 6.2:-62755186 | None:intergenic |
| ATATATAAGACTGTAAGAGA+AGG | 0.650562 | 6.2:+62758213 | MS.gene66544:CDS |
| AGAGATGGAGAAGAAGCTTG+GGG | 0.675997 | 6.2:+62754765 | MS.gene66544:CDS |
| TAGACTTTAGGTGCCACACG+TGG | 0.678929 | 6.2:-62758069 | None:intergenic |
| TGCCGGCTATGATCCACGTG+TGG | 0.679150 | 6.2:+62758056 | MS.gene66544:CDS |
| GTTTGGTGAAGAAAGTGGGA+AGG | 0.710512 | 6.2:+62754960 | MS.gene66544:CDS |
| AAGACTGTAAGAGAAGGACA+TGG | 0.732952 | 6.2:+62758219 | MS.gene66544:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATTTATATTTATTA+TGG | + | chr6.2:62757943-62757962 | MS.gene66544:intron | 0.0% |
| !! | ATAAAAATTATAAGTGTTTA+TGG | - | chr6.2:62757237-62757256 | None:intergenic | 10.0% |
| !! | CTGAAAAATTATAAAAAAAT+TGG | - | chr6.2:62757991-62758010 | None:intergenic | 10.0% |
| !!! | AAAATGTACAAATTTAAAAT+TGG | - | chr6.2:62757597-62757616 | None:intergenic | 10.0% |
| !!! | AATTTTGATTTATCATATAT+TGG | + | chr6.2:62756959-62756978 | MS.gene66544:intron | 10.0% |
| !!! | CAATTTTTTTATAATTTTTC+AGG | + | chr6.2:62757989-62758008 | MS.gene66544:intron | 10.0% |
| !! | AATAATAAGAATATTAGAGT+TGG | + | chr6.2:62754361-62754380 | MS.gene66544:CDS | 15.0% |
| !! | ATATTGAAAAGAAGATTAAA+CGG | - | chr6.2:62757727-62757746 | None:intergenic | 15.0% |
| !! | TTGAGATAAATAAGAATATT+GGG | + | chr6.2:62754455-62754474 | MS.gene66544:CDS | 15.0% |
| !! | TTTATTAAGCAATATGAAAT+TGG | + | chr6.2:62756827-62756846 | MS.gene66544:intron | 15.0% |
| !!! | ATTGGAAATTTTATTTTAGT+TGG | + | chr6.2:62756845-62756864 | MS.gene66544:intron | 15.0% |
| !!! | ATTTTAATTATACACAAATG+TGG | + | chr6.2:62757906-62757925 | MS.gene66544:intron | 15.0% |
| !!! | TTGAAGTTAATAAGAATTTT+AGG | + | chr6.2:62754554-62754573 | MS.gene66544:CDS | 15.0% |
| !!! | TTTGAGATAAATAAGAATAT+TGG | + | chr6.2:62754454-62754473 | MS.gene66544:CDS | 15.0% |
| !!! | TTTGATTTGTTTAACTTATT+AGG | + | chr6.2:62755277-62755296 | MS.gene66544:intron | 15.0% |
| !!! | TTTTTATAACTGTGTATTTT+GGG | + | chr6.2:62754689-62754708 | MS.gene66544:CDS | 15.0% |
| !!! | TTTTTTATAATTTTTCAGGA+TGG | + | chr6.2:62757993-62758012 | MS.gene66544:intron | 15.0% |
| !! | AAATTCCAATTCGTATTTAT+AGG | - | chr6.2:62756944-62756963 | None:intergenic | 20.0% |
| !! | CAAATAAAGAAAGAAAACAT+TGG | - | chr6.2:62756723-62756742 | None:intergenic | 20.0% |
| !! | CACGTTAAATATTAAGATAA+GGG | + | chr6.2:62755884-62755903 | MS.gene66544:intron | 20.0% |
| !! | CCAAATTAATTCATTTGTAT+AGG | + | chr6.2:62757499-62757518 | MS.gene66544:intron | 20.0% |
| !! | CCTATACAAATGAATTAATT+TGG | - | chr6.2:62757502-62757521 | None:intergenic | 20.0% |
| !! | GAATGAAATTAATGCAAATA+TGG | - | chr6.2:62757349-62757368 | None:intergenic | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | - | chr6.2:62755303-62755322 | None:intergenic | 20.0% |
| !! | TGAGATAAATAAGAATATTG+GGG | + | chr6.2:62754456-62754475 | MS.gene66544:CDS | 20.0% |
| !! | TGGTATTCTTGTATAAATTA+AGG | - | chr6.2:62756902-62756921 | None:intergenic | 20.0% |
| !! | TTAAGCTATTTATTCAAACA+AGG | + | chr6.2:62755525-62755544 | MS.gene66544:intron | 20.0% |
| !!! | GGACTTTTATTAATTTTTGT+TGG | - | chr6.2:62756309-62756328 | None:intergenic | 20.0% |
| !!! | GTTTTTATAACTGTGTATTT+TGG | + | chr6.2:62754688-62754707 | MS.gene66544:CDS | 20.0% |
| ! | AACAGTGCAAATTATAAAAG+AGG | - | chr6.2:62756628-62756647 | None:intergenic | 25.0% |
| ! | AAGAGCAACAAAAATTCAAT+TGG | - | chr6.2:62755798-62755817 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr6.2:62757083-62757102 | None:intergenic | 25.0% |
| ! | AATTATAAGTGTTTATGGAG+AGG | - | chr6.2:62757232-62757251 | None:intergenic | 25.0% |
| ! | ACAAACCTATAAATACGAAT+TGG | + | chr6.2:62756936-62756955 | MS.gene66544:intron | 25.0% |
| ! | ATAAATAAGAATATTGGGGT+GGG | + | chr6.2:62754460-62754479 | MS.gene66544:CDS | 25.0% |
| ! | ATATATAAGACTGTAAGAGA+AGG | + | chr6.2:62758213-62758232 | MS.gene66544:CDS | 25.0% |
| ! | ATTATAAGTGTTTATGGAGA+GGG | - | chr6.2:62757231-62757250 | None:intergenic | 25.0% |
| ! | ATTGGTTATAAAGAGAGAAA+AGG | - | chr6.2:62755780-62755799 | None:intergenic | 25.0% |
| ! | CAAACCAAACAAAAACAAAA+TGG | - | chr6.2:62756547-62756566 | None:intergenic | 25.0% |
| ! | GAAAAATTATGTGTTTGAGT+TGG | - | chr6.2:62756095-62756114 | None:intergenic | 25.0% |
| ! | GAAACAATATATGATATGTC+TGG | + | chr6.2:62755371-62755390 | MS.gene66544:intron | 25.0% |
| ! | GACTCATTTCATTGATATAT+AGG | + | chr6.2:62755829-62755848 | MS.gene66544:intron | 25.0% |
| ! | GCACGTTAAATATTAAGATA+AGG | + | chr6.2:62755883-62755902 | MS.gene66544:intron | 25.0% |
| ! | TAACCGTTTCTTAAAATCAA+GGG | + | chr6.2:62756335-62756354 | MS.gene66544:intron | 25.0% |
| ! | TAAGGGAAAAACATGAAATT+AGG | + | chr6.2:62755901-62755920 | MS.gene66544:intron | 25.0% |
| ! | TGCAAATATGGATGTAATTT+CGG | - | chr6.2:62757337-62757356 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr6.2:62757095-62757114 | MS.gene66544:intron | 25.0% |
| !! | CATTTACATTTGTTTCTTGT+TGG | + | chr6.2:62757678-62757697 | MS.gene66544:intron | 25.0% |
| !! | TCTTTCTTTATTTGTTGCTA+TGG | + | chr6.2:62756729-62756748 | MS.gene66544:intron | 25.0% |
| !! | TTTAACTTATTAGGCCTATT+TGG | + | chr6.2:62755286-62755305 | MS.gene66544:intron | 25.0% |
| !! | TTTAAGAAACGGTTACATTT+TGG | - | chr6.2:62756330-62756349 | None:intergenic | 25.0% |
| !!! | ATTTTAGGAGATTAGAGAAA+AGG | + | chr6.2:62754527-62754546 | MS.gene66544:CDS | 25.0% |
| !!! | CATTTTGTTTTTGTTTGGTT+TGG | + | chr6.2:62756545-62756564 | MS.gene66544:intron | 25.0% |
| !!! | GTTTGTCATGGTATTTTTTA+TGG | - | chr6.2:62756922-62756941 | None:intergenic | 25.0% |
| !!! | TTCTCCATTTTGTTTTTGTT+TGG | + | chr6.2:62756540-62756559 | MS.gene66544:intron | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr6.2:62757082-62757101 | MS.gene66544:intron | 25.0% |
| !!! | TTTTAGGAGATTAGAGAAAA+GGG | + | chr6.2:62754528-62754547 | MS.gene66544:CDS | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr6.2:62757108-62757127 | MS.gene66544:intron | 30.0% | |
| AACCATAATGAGTCTGATTT+CGG | + | chr6.2:62757619-62757638 | MS.gene66544:intron | 30.0% | |
| AATTTGGTCTATCTCATACA+CGG | - | chr6.2:62757486-62757505 | None:intergenic | 30.0% | |
| AGAAGATGACAAAGAATATG+TGG | + | chr6.2:62755647-62755666 | MS.gene66544:CDS | 30.0% | |
| ATCTAAAAGATTAGAATCGC+CGG | - | chr6.2:62758115-62758134 | None:intergenic | 30.0% | |
| ATGAAGTTTAGCTGAATTAG+TGG | + | chr6.2:62755934-62755953 | MS.gene66544:intron | 30.0% | |
| ATTTGAATGTAGTATGAGCA+TGG | + | chr6.2:62756119-62756138 | MS.gene66544:intron | 30.0% | |
| CAACTGTTTGAGAGATATTA+CGG | + | chr6.2:62755349-62755368 | MS.gene66544:intron | 30.0% | |
| CATTACTCATTACGAAAACA+TGG | - | chr6.2:62757022-62757041 | None:intergenic | 30.0% | |
| CTTAAGCGCTTATTTGATAA+AGG | + | chr6.2:62755482-62755501 | MS.gene66544:intron | 30.0% | |
| GAAATTGAAGCTGATTACAT+TGG | + | chr6.2:62758015-62758034 | MS.gene66544:CDS | 30.0% | |
| GAAGATGACAAAGAATATGT+GGG | + | chr6.2:62755648-62755667 | MS.gene66544:CDS | 30.0% | |
| GATAAATAAGAATATTGGGG+TGG | + | chr6.2:62754459-62754478 | MS.gene66544:CDS | 30.0% | |
| GTAAAGTAGTGCAACTTAAT+TGG | - | chr6.2:62757264-62757283 | None:intergenic | 30.0% | |
| GTAACCGTTTCTTAAAATCA+AGG | + | chr6.2:62756334-62756353 | MS.gene66544:intron | 30.0% | |
| GTCTAAAAGTTGTCAAAAAG+TGG | + | chr6.2:62757175-62757194 | MS.gene66544:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr6.2:62757057-62757076 | None:intergenic | 30.0% | |
| TCGTATTTATAGGTTTGTCA+TGG | - | chr6.2:62756934-62756953 | None:intergenic | 30.0% | |
| TTTAGGAGATTAGAGAAAAG+GGG | + | chr6.2:62754529-62754548 | MS.gene66544:CDS | 30.0% | |
| ! | AAAACATGGTTATGCCATTT+GGG | - | chr6.2:62757008-62757027 | None:intergenic | 30.0% |
| ! | AAAATTGGTTTCAGAATCCT+AGG | + | chr6.2:62754632-62754651 | MS.gene66544:CDS | 30.0% |
| ! | AATAATTACCTTCTGGAGAA+AGG | - | chr6.2:62755754-62755773 | None:intergenic | 30.0% |
| ! | AATATTAGAGTTGGTTGTCA+AGG | + | chr6.2:62754370-62754389 | MS.gene66544:CDS | 30.0% |
| ! | ATAGGTAATGTTTGTTAGAC+AGG | + | chr6.2:62755847-62755866 | MS.gene66544:intron | 30.0% |
| ! | ATGAGGTTCTTGATGATAAA+TGG | + | chr6.2:62755043-62755062 | MS.gene66544:CDS | 30.0% |
| ! | TGAGGTTCTTGATGATAAAT+GGG | + | chr6.2:62755044-62755063 | MS.gene66544:CDS | 30.0% |
| ! | TTAAAATGCTGCACATTTTG+TGG | - | chr6.2:62754598-62754617 | None:intergenic | 30.0% |
| !! | AACTGTGTATTTTGGGAATA+TGG | + | chr6.2:62754696-62754715 | MS.gene66544:CDS | 30.0% |
| !! | AATGCATTGACTGAAAATGA+AGG | + | chr6.2:62754991-62755010 | MS.gene66544:CDS | 30.0% |
| !! | ATGCATTGACTGAAAATGAA+GGG | + | chr6.2:62754992-62755011 | MS.gene66544:CDS | 30.0% |
| !! | CAACCCTTGATTTTAAGAAA+CGG | - | chr6.2:62756341-62756360 | None:intergenic | 30.0% |
| !!! | AGGATTCTGAAACCAATTTT+TGG | - | chr6.2:62754632-62754651 | None:intergenic | 30.0% |
| !!! | GCTTCATTTTAACTTCTTTC+TGG | + | chr6.2:62757756-62757775 | MS.gene66544:intron | 30.0% |
| !!! | GGATTCTGAAACCAATTTTT+GGG | - | chr6.2:62754631-62754650 | None:intergenic | 30.0% |
| AAAATGAAGGGAAAGTTGGA+GGG | + | chr6.2:62755004-62755023 | MS.gene66544:CDS | 35.0% | |
| AAACGCAACAAGAAACATGA+AGG | - | chr6.2:62756377-62756396 | None:intergenic | 35.0% | |
| AAATGTGTTCGCTTCGTATA+AGG | - | chr6.2:62754730-62754749 | None:intergenic | 35.0% | |
| AAGAAAACGAGCAGAATTAC+TGG | + | chr6.2:62758158-62758177 | MS.gene66544:CDS | 35.0% | |
| AAGGAGGAATAATTACCTTC+TGG | - | chr6.2:62755761-62755780 | None:intergenic | 35.0% | |
| AATCCTAGGCATGTTATGAT+TGG | + | chr6.2:62754646-62754665 | MS.gene66544:CDS | 35.0% | |
| ACTGAAAATGAAGGGAAAGT+TGG | + | chr6.2:62755000-62755019 | MS.gene66544:CDS | 35.0% | |
| AGCAACTATTATTGGACATG+AGG | + | chr6.2:62755248-62755267 | MS.gene66544:CDS | 35.0% | |
| AGGAATAGAGCCAAATCATT+GGG | - | chr6.2:62756063-62756082 | None:intergenic | 35.0% | |
| ATACCAATCATAACATGCCT+AGG | - | chr6.2:62754652-62754671 | None:intergenic | 35.0% | |
| CAAGAAACATGAAGGATGTA+TGG | - | chr6.2:62756369-62756388 | None:intergenic | 35.0% | |
| CTTCAATTCCTAAGAGGTTA+GGG | + | chr6.2:62754422-62754441 | MS.gene66544:CDS | 35.0% | |
| GAAAACATGGTTATGCCATT+TGG | - | chr6.2:62757009-62757028 | None:intergenic | 35.0% | |
| GCAGAGATAGCAACTATTAT+TGG | + | chr6.2:62755240-62755259 | MS.gene66544:CDS | 35.0% | |
| GCATGTTATGATTGGTATAG+TGG | + | chr6.2:62754654-62754673 | MS.gene66544:CDS | 35.0% | |
| GCTTCAGAAAATTCTGTGTT+TGG | + | chr6.2:62754943-62754962 | MS.gene66544:CDS | 35.0% | |
| GGTTATAAAGAGAGAAAAGG+AGG | - | chr6.2:62755777-62755796 | None:intergenic | 35.0% | |
| GTCAAGGTGGTAACTTTAAT+GGG | + | chr6.2:62754386-62754405 | MS.gene66544:CDS | 35.0% | |
| GTTATGATTGGTATAGTGGT+TGG | + | chr6.2:62754658-62754677 | MS.gene66544:CDS | 35.0% | |
| GTTCAGAAGAGTAGGAAAAA+GGG | + | chr6.2:62755066-62755085 | MS.gene66544:CDS | 35.0% | |
| TACACAAATGTGGTGAATGA+TGG | + | chr6.2:62757916-62757935 | MS.gene66544:intron | 35.0% | |
| TACTAGAGAATTCATGCATC+AGG | - | chr6.2:62757286-62757305 | None:intergenic | 35.0% | |
| TATGGATGTAATTTCGGAGT+AGG | - | chr6.2:62757331-62757350 | None:intergenic | 35.0% | |
| TCTTCAATTCCTAAGAGGTT+AGG | + | chr6.2:62754421-62754440 | MS.gene66544:CDS | 35.0% | |
| TGAAAGAACAACAAACACAG+TGG | - | chr6.2:62756661-62756680 | None:intergenic | 35.0% | |
| TGTCAAGGTGGTAACTTTAA+TGG | + | chr6.2:62754385-62754404 | MS.gene66544:CDS | 35.0% | |
| ! | AATTATTTTCTGCACAGACC+TGG | + | chr6.2:62756228-62756247 | MS.gene66544:intron | 35.0% |
| ! | ATAAATGGGTTCAGAAGAGT+AGG | + | chr6.2:62755058-62755077 | MS.gene66544:CDS | 35.0% |
| ! | ATTGAATTGGGAGATTTTGG+TGG | + | chr6.2:62755131-62755150 | MS.gene66544:CDS | 35.0% |
| ! | ATTTGTTTCTTGTTGGACTG+TGG | + | chr6.2:62757685-62757704 | MS.gene66544:intron | 35.0% |
| ! | CGTTTTCTTCAATTCCTAAG+AGG | + | chr6.2:62754416-62754435 | MS.gene66544:CDS | 35.0% |
| ! | CTCTTGAGTTATCTCGTTTT+GGG | - | chr6.2:62756205-62756224 | None:intergenic | 35.0% |
| ! | GAAGTATTCATTAGCCCAAA+TGG | + | chr6.2:62756991-62757010 | MS.gene66544:intron | 35.0% |
| ! | GGTTGGTTAGATAGTCAAAA+TGG | - | chr6.2:62757811-62757830 | None:intergenic | 35.0% |
| ! | TCTCTGATTTTGTTCAGTGT+TGG | + | chr6.2:62756776-62756795 | MS.gene66544:intron | 35.0% |
| ! | TGGATTGAATTGGGAGATTT+TGG | + | chr6.2:62755128-62755147 | MS.gene66544:CDS | 35.0% |
| !! | AAGCAAAAGGCATTAACCAT+AGG | - | chr6.2:62755165-62755184 | None:intergenic | 35.0% |
| !! | ATGTGTTTGAGTTGGTCTTA+AGG | - | chr6.2:62756087-62756106 | None:intergenic | 35.0% |
| !! | CCAAAGGTGTTAGCTTTAAT+GGG | + | chr6.2:62754485-62754504 | MS.gene66544:CDS | 35.0% |
| !! | CTATGTCATCGCTTTTGTTA+CGG | + | chr6.2:62755725-62755744 | MS.gene66544:CDS | 35.0% |
| !! | GACATAGTGTTGACAATATC+AGG | - | chr6.2:62755712-62755731 | None:intergenic | 35.0% |
| !! | GCATTTGGATGGATTGAATT+GGG | + | chr6.2:62755119-62755138 | MS.gene66544:CDS | 35.0% |
| !! | TCCAAAGGTGTTAGCTTTAA+TGG | + | chr6.2:62754484-62754503 | MS.gene66544:CDS | 35.0% |
| !!! | TAGCTTTAATGGGTTTTCGT+CGG | + | chr6.2:62754495-62754514 | MS.gene66544:CDS | 35.0% |
| AAAGAGATGGAGAAGAAGCT+TGG | + | chr6.2:62754763-62754782 | MS.gene66544:CDS | 40.0% | |
| AAAGTAGCCATGTCAGAACA+TGG | - | chr6.2:62757832-62757851 | None:intergenic | 40.0% | |
| AAGACTGTAAGAGAAGGACA+TGG | + | chr6.2:62758219-62758238 | MS.gene66544:CDS | 40.0% | |
| AAGAGATGGAGAAGAAGCTT+GGG | + | chr6.2:62754764-62754783 | MS.gene66544:CDS | 40.0% | |
| ACCTAAAGTCTACGAGAAGT+TGG | + | chr6.2:62758080-62758099 | MS.gene66544:CDS | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr6.2:62757118-62757137 | MS.gene66544:intron | 40.0% | |
| AGCTGAATTAGTGGAACTAG+AGG | + | chr6.2:62755943-62755962 | MS.gene66544:intron | 40.0% | |
| AGCTTCTTCTCCATCTCTTT+CGG | - | chr6.2:62754763-62754782 | None:intergenic | 40.0% | |
| AGTCATACCAAGTCCATACA+AGG | - | chr6.2:62756257-62756276 | None:intergenic | 40.0% | |
| AGTCTTAACACTTTGCTGCT+TGG | + | chr6.2:62755586-62755605 | MS.gene66544:intron | 40.0% | |
| ATAGAGCCAAATCATTGGGA+AGG | - | chr6.2:62756059-62756078 | None:intergenic | 40.0% | |
| ATCCTAACTCTCACACTTTC+AGG | - | chr6.2:62754850-62754869 | None:intergenic | 40.0% | |
| CAGGAATAGAGCCAAATCAT+TGG | - | chr6.2:62756064-62756083 | None:intergenic | 40.0% | |
| CCCATTAAAGCTAACACCTT+TGG | - | chr6.2:62754488-62754507 | None:intergenic | 40.0% | |
| CCTAAAGTCTACGAGAAGTT+GGG | + | chr6.2:62758081-62758100 | MS.gene66544:CDS | 40.0% | |
| CCTAAGAGGTTAGGGAAAAT+GGG | + | chr6.2:62754430-62754449 | MS.gene66544:CDS | 40.0% | |
| CTCCGAAATCAGACTCATTA+TGG | - | chr6.2:62757624-62757643 | None:intergenic | 40.0% | |
| CTTCTATTAGTTGCATCTGC+CGG | + | chr6.2:62758039-62758058 | MS.gene66544:CDS | 40.0% | |
| GAAAATGAAGGGAAAGTTGG+AGG | + | chr6.2:62755003-62755022 | MS.gene66544:CDS | 40.0% | |
| GAAGATTAAACGGAAACCCT+AGG | - | chr6.2:62757717-62757736 | None:intergenic | 40.0% | |
| GAGAAGTTGGGAAAAATCTC+CGG | + | chr6.2:62758093-62758112 | MS.gene66544:CDS | 40.0% | |
| GGTTCAGAAGAGTAGGAAAA+AGG | + | chr6.2:62755065-62755084 | MS.gene66544:CDS | 40.0% | |
| TAACCAACCATGTTCTGACA+TGG | + | chr6.2:62757822-62757841 | MS.gene66544:intron | 40.0% | |
| TAGAGCCAAATCATTGGGAA+GGG | - | chr6.2:62756058-62756077 | None:intergenic | 40.0% | |
| TCCTAAGAGGTTAGGGAAAA+TGG | + | chr6.2:62754429-62754448 | MS.gene66544:CDS | 40.0% | |
| TGGGAAGATAGTCGTGTTTA+CGG | + | chr6.2:62755191-62755210 | MS.gene66544:CDS | 40.0% | |
| TGTCTGTTCAGTGTGTTTGT+TGG | + | chr6.2:62756694-62756713 | MS.gene66544:intron | 40.0% | |
| ! | ATCCTGAAAGTGTGAGAGTT+AGG | + | chr6.2:62754845-62754864 | MS.gene66544:CDS | 40.0% |
| ! | ATTAGAGTTGGTTGTCAAGG+TGG | + | chr6.2:62754373-62754392 | MS.gene66544:CDS | 40.0% |
| ! | ATTGGTATAGTGGTTGGTTC+AGG | + | chr6.2:62754664-62754683 | MS.gene66544:CDS | 40.0% |
| ! | CATAGTCAGAGGTGTAAACT+CGG | - | chr6.2:62756178-62756197 | None:intergenic | 40.0% |
| ! | CTGTGTTTGGTGAAGAAAGT+GGG | + | chr6.2:62754956-62754975 | MS.gene66544:CDS | 40.0% |
| ! | GCTCTTGAGTTATCTCGTTT+TGG | - | chr6.2:62756206-62756225 | None:intergenic | 40.0% |
| ! | GTTAATGCCTTTTGCTTACC+TGG | + | chr6.2:62755168-62755187 | MS.gene66544:CDS | 40.0% |
| ! | TCTGTGTTTGGTGAAGAAAG+TGG | + | chr6.2:62754955-62754974 | MS.gene66544:CDS | 40.0% |
| ! | TGCAGCATTTTAAGCCAAGA+GGG | + | chr6.2:62754605-62754624 | MS.gene66544:CDS | 40.0% |
| ! | TTTTCTTCCAGATGGATGAG+TGG | - | chr6.2:62758145-62758164 | None:intergenic | 40.0% |
| ! | TTTTGCCCTTCCCAATGATT+TGG | + | chr6.2:62756050-62756069 | MS.gene66544:intron | 40.0% |
| !! | AAGATGAAGGCGGGTTTTAA+GGG | + | chr6.2:62754802-62754821 | MS.gene66544:CDS | 40.0% |
| !! | ATTATCGAAGCGTTGAAGAG+AGG | + | chr6.2:62754883-62754902 | MS.gene66544:CDS | 40.0% |
| !! | CGCATTTGGATGGATTGAAT+TGG | + | chr6.2:62755118-62755137 | MS.gene66544:CDS | 40.0% |
| !! | GATTTTGATGCCGAAAGAGA+TGG | + | chr6.2:62754750-62754769 | MS.gene66544:CDS | 40.0% |
| !! | TTATCGAAGCGTTGAAGAGA+GGG | + | chr6.2:62754884-62754903 | MS.gene66544:CDS | 40.0% |
| !! | TTGAGTTATCTCGTTTTGGG+AGG | - | chr6.2:62756202-62756221 | None:intergenic | 40.0% |
| !!! | CGTCGGTTTCGAAGAATTTT+AGG | + | chr6.2:62754512-62754531 | MS.gene66544:CDS | 40.0% |
| AAGGGAAAGTTGGAGGGAAT+TGG | + | chr6.2:62755010-62755029 | MS.gene66544:CDS | 45.0% | |
| ACACTTTCAGGATGCATTGC+AGG | - | chr6.2:62754838-62754857 | None:intergenic | 45.0% | |
| AGAGATGGAGAAGAAGCTTG+GGG | + | chr6.2:62754765-62754784 | MS.gene66544:CDS | 45.0% | |
| CATCAAGAACCTCATCTTCC+CGG | - | chr6.2:62755038-62755057 | None:intergenic | 45.0% | |
| CCATCCAAATGCGACGTATA+AGG | - | chr6.2:62755111-62755130 | None:intergenic | 45.0% | |
| CCATTGCTGTGTATCATCTC+CGG | + | chr6.2:62756447-62756466 | MS.gene66544:intron | 45.0% | |
| CCCAACTTCTCGTAGACTTT+AGG | - | chr6.2:62758084-62758103 | None:intergenic | 45.0% | |
| CCTTATACGTCGCATTTGGA+TGG | + | chr6.2:62755108-62755127 | MS.gene66544:CDS | 45.0% | |
| CGAGTTTGAGAAGATGAAGG+CGG | + | chr6.2:62754792-62754811 | MS.gene66544:CDS | 45.0% | |
| GAGCGAGTTTGAGAAGATGA+AGG | + | chr6.2:62754789-62754808 | MS.gene66544:CDS | 45.0% | |
| GAGTTTGAGAAGATGAAGGC+GGG | + | chr6.2:62754793-62754812 | MS.gene66544:CDS | 45.0% | |
| GCAACCTTATACGTCGCATT+TGG | + | chr6.2:62755104-62755123 | MS.gene66544:CDS | 45.0% | |
| GCTACACGACTCAACGTATA+GGG | - | chr6.2:62756022-62756041 | None:intergenic | 45.0% | |
| GGGAAGATAGTCGTGTTTAC+GGG | + | chr6.2:62755192-62755211 | MS.gene66544:CDS | 45.0% | |
| GGTTGAGTAAGGAGAATGTG+TGG | + | chr6.2:62754905-62754924 | MS.gene66544:CDS | 45.0% | |
| GTTGAAGAGAGGGTTGAGTA+AGG | + | chr6.2:62754894-62754913 | MS.gene66544:CDS | 45.0% | |
| TAGCCATGTCAGAACATGGT+TGG | - | chr6.2:62757828-62757847 | None:intergenic | 45.0% | |
| TATTTCGCCACTCATCCATC+TGG | + | chr6.2:62758135-62758154 | MS.gene66544:CDS | 45.0% | |
| TGCTACACGACTCAACGTAT+AGG | - | chr6.2:62756023-62756042 | None:intergenic | 45.0% | |
| ! | AATATTGGGGTGGGTTCCAA+AGG | + | chr6.2:62754469-62754488 | MS.gene66544:CDS | 45.0% |
| ! | AATGCCTTTTGCTTACCTGG+TGG | + | chr6.2:62755171-62755190 | MS.gene66544:CDS | 45.0% |
| ! | AGAGAAGGACATGGTGTTGA+AGG | + | chr6.2:62758228-62758247 | MS.gene66544:CDS | 45.0% |
| ! | ATGCCTTTTGCTTACCTGGT+GGG | + | chr6.2:62755172-62755191 | MS.gene66544:CDS | 45.0% |
| ! | CACTTTGCTGCTTGGTGATT+AGG | + | chr6.2:62755594-62755613 | MS.gene66544:intron | 45.0% |
| ! | CCCATTTTCCCTAACCTCTT+AGG | - | chr6.2:62754433-62754452 | None:intergenic | 45.0% |
| ! | GTGCAGCATTTTAAGCCAAG+AGG | + | chr6.2:62754604-62754623 | MS.gene66544:CDS | 45.0% |
| ! | GTTTGGTGAAGAAAGTGGGA+AGG | + | chr6.2:62754960-62754979 | MS.gene66544:CDS | 45.0% |
| ! | TCTGCTCGTTTTCTTCCAGA+TGG | - | chr6.2:62758153-62758172 | None:intergenic | 45.0% |
| ! | TTGCTGCTTGGTGATTAGGT+TGG | + | chr6.2:62755598-62755617 | MS.gene66544:intron | 45.0% |
| ! | TTTTCTTGCGTTTGCGTGTC+AGG | + | chr6.2:62756515-62756534 | MS.gene66544:intron | 45.0% |
| !! | AACCAATTTTTGGGCCCTCT+TGG | - | chr6.2:62754622-62754641 | None:intergenic | 45.0% |
| !! | AGAATTACTGGCTCAAGCTC+AGG | + | chr6.2:62758170-62758189 | MS.gene66544:CDS | 45.0% |
| !! | GAAGATGAAGGCGGGTTTTA+AGG | + | chr6.2:62754801-62754820 | MS.gene66544:CDS | 45.0% |
| !! | GTTTGAGTTGGTCTTAAGGC+AGG | - | chr6.2:62756083-62756102 | None:intergenic | 45.0% |
| !! | TGATTAGGTTGGACATGCTG+TGG | + | chr6.2:62755609-62755628 | MS.gene66544:intron | 45.0% |
| !! | TGGACTGTGGATTAGTCCTA+GGG | + | chr6.2:62757698-62757717 | MS.gene66544:intron | 45.0% |
| !! | TTGGACTGTGGATTAGTCCT+AGG | + | chr6.2:62757697-62757716 | MS.gene66544:intron | 45.0% |
| !! | TTTGGTGGTGAAGGATCCTA+TGG | + | chr6.2:62755146-62755165 | MS.gene66544:CDS | 45.0% |
| !! | TTTTGGGAGGTCATAGTCAG+AGG | - | chr6.2:62756189-62756208 | None:intergenic | 45.0% |
| !!! | AGATGAAGGCGGGTTTTAAG+GGG | + | chr6.2:62754803-62754822 | MS.gene66544:CDS | 45.0% |
| !!! | TTGGGAGATTTTGGTGGTGA+AGG | + | chr6.2:62755137-62755156 | MS.gene66544:CDS | 45.0% |
| !! | TGAAAAATTATAAAAAAATT+GGG | - | chr6.2:62757990-62758009 | None:intergenic | 5.0% |
| AACACGACTATCTTCCCACC+AGG | - | chr6.2:62755189-62755208 | None:intergenic | 50.0% | |
| AAGTTGGAGGGAATTGGCAC+CGG | + | chr6.2:62755016-62755035 | MS.gene66544:CDS | 50.0% | |
| AATGCAACACTCAGCATGCC+AGG | - | chr6.2:62756481-62756500 | None:intergenic | 50.0% | |
| ACAGACCTGGATGCCTTGTA+TGG | + | chr6.2:62756241-62756260 | MS.gene66544:intron | 50.0% | |
| ACAGCAATGGCATTGCACAC+AGG | - | chr6.2:62756437-62756456 | None:intergenic | 50.0% | |
| AGCCAAGAGGGCCCAAAAAT+TGG | + | chr6.2:62754617-62754636 | MS.gene66544:CDS | 50.0% | |
| ATGCAACACTCAGCATGCCA+GGG | - | chr6.2:62756480-62756499 | None:intergenic | 50.0% | |
| CATCTTCTCAGCACTGTGTC+TGG | - | chr6.2:62755635-62755654 | None:intergenic | 50.0% | |
| CCGGAGATGATACACAGCAA+TGG | - | chr6.2:62756450-62756469 | None:intergenic | 50.0% | |
| CTGGATGCCTTGTATGGACT+TGG | + | chr6.2:62756247-62756266 | MS.gene66544:intron | 50.0% | |
| CTTCCCACCAGGTAAGCAAA+AGG | - | chr6.2:62755178-62755197 | None:intergenic | 50.0% | |
| TACGGCTACCTTTCTCCAGA+AGG | + | chr6.2:62755743-62755762 | MS.gene66544:CDS | 50.0% | |
| ! | CAAGTCCATACAAGGCATCC+AGG | - | chr6.2:62756249-62756268 | None:intergenic | 50.0% |
| ! | TAGACTTTAGGTGCCACACG+TGG | - | chr6.2:62758072-62758091 | None:intergenic | 50.0% |
| AGGAAAAAGGGTCACGAGCG+TGG | + | chr6.2:62755078-62755097 | MS.gene66544:CDS | 55.0% | |
| AGTTGGAGGGAATTGGCACC+GGG | + | chr6.2:62755017-62755036 | MS.gene66544:CDS | 55.0% | |
| GGAAAAAGGGTCACGAGCGT+GGG | + | chr6.2:62755079-62755098 | MS.gene66544:CDS | 55.0% | |
| TGCCACACGTGGATCATAGC+CGG | - | chr6.2:62758061-62758080 | None:intergenic | 55.0% | |
| ! | ACTGGCTCAAGCTCAGGTGA+TGG | + | chr6.2:62758176-62758195 | MS.gene66544:CDS | 55.0% |
| ! | GAATTGGCACCGGGAAGATG+AGG | + | chr6.2:62755026-62755045 | MS.gene66544:CDS | 55.0% |
| AGCATGCCAGGGAGGAATGC+CGG | - | chr6.2:62756469-62756488 | None:intergenic | 60.0% | |
| CAACACTCAGCATGCCAGGG+AGG | - | chr6.2:62756477-62756496 | None:intergenic | 60.0% | |
| TCATCTCCGGCATTCCTCCC+TGG | + | chr6.2:62756460-62756479 | MS.gene66544:intron | 60.0% | |
| ! | TGCCGGCTATGATCCACGTG+TGG | + | chr6.2:62758056-62758075 | MS.gene66544:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 62754349 | 62758260 | 62754349 | ID=MS.gene66544 |
| chr6.2 | mRNA | 62754349 | 62758260 | 62754349 | ID=MS.gene66544.t1;Parent=MS.gene66544 |
| chr6.2 | exon | 62754349 | 62755269 | 62754349 | ID=MS.gene66544.t1.exon1;Parent=MS.gene66544.t1 |
| chr6.2 | CDS | 62754349 | 62755269 | 62754349 | ID=cds.MS.gene66544.t1;Parent=MS.gene66544.t1 |
| chr6.2 | exon | 62755616 | 62755764 | 62755616 | ID=MS.gene66544.t1.exon2;Parent=MS.gene66544.t1 |
| chr6.2 | CDS | 62755616 | 62755764 | 62755616 | ID=cds.MS.gene66544.t1;Parent=MS.gene66544.t1 |
| chr6.2 | exon | 62758011 | 62758260 | 62758011 | ID=MS.gene66544.t1.exon3;Parent=MS.gene66544.t1 |
| chr6.2 | CDS | 62758011 | 62758260 | 62758011 | ID=cds.MS.gene66544.t1;Parent=MS.gene66544.t1 |
| Gene Sequence |
| Protein sequence |
