AlfalfaGEDB | MS.gene81375

M. sativa cultivar XinJiangDaYe / MS.gene81375

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81375.t1	XP_003617732.1	76	446	65	4	1	441	1	409	2.30E-95	359.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81375.t1	G7K4H5	76.0	446	65	4	1	441	1	409	1.6e-95	359.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049404	MS.gene81375	0.802064	6.70E-49	-1.69E-46
MS.gene049825	MS.gene81375	0.800554	1.36E-48	-1.69E-46
MS.gene049873	MS.gene81375	0.815232	1.03E-51	-1.69E-46
MS.gene049878	MS.gene81375	0.800643	1.31E-48	-1.69E-46
MS.gene050020	MS.gene81375	0.801051	1.08E-48	-1.69E-46
MS.gene05016	MS.gene81375	0.827734	1.33E-54	-1.69E-46
MS.gene050201	MS.gene81375	0.800109	1.68E-48	-1.69E-46
MS.gene050303	MS.gene81375	0.813707	2.23E-51	-1.69E-46
MS.gene050355	MS.gene81375	0.818211	2.21E-52	-1.69E-46
MS.gene050442	MS.gene81375	0.817527	3.15E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81375.t1	MTR_5g094850	78.689	549	66	8	1	543	1	504	0.0	782
MS.gene81375.t1	MTR_5g094850	74.818	548	66	8	1	543	1	481	0.0	724
MS.gene81375.t1	MTR_5g094960	50.755	530	141	9	1	510	3	432	2.07e-141	417
MS.gene81375.t1	MTR_5g094920	48.889	585	207	15	1	543	3	537	2.82e-132	395
MS.gene81375.t1	MTR_5g094990	49.812	532	144	10	1	510	3	433	2.69e-122	368
MS.gene81375.t1	MTR_5g094950	41.667	588	189	16	1	508	3	516	3.77e-94	298
MS.gene81375.t1	MTR_5g095390	66.176	272	40	6	1	269	1	223	4.52e-90	281
MS.gene81375.t1	MTR_5g095390	44.000	200	40	9	347	543	239	369	1.19e-25	108
MS.gene81375.t1	MTR_5g094910	48.592	284	69	8	1	266	3	227	3.09e-58	199
MS.gene81375.t1	MTR_5g094910	39.216	153	47	3	358	510	243	349	2.96e-21	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 111 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAACAATGAATTGG+AGG	0.488189	5.2:-79976434	MS.gene81375:CDS
AAAGGGATCAAGGATGCTCA+AGG	0.628139	5.2:-79975186	MS.gene81375:CDS
AAATGCTTTGGATGGACTTA+AGG	0.315634	5.2:-79976185	MS.gene81375:CDS
AACAAAGATTGTTGAATTAG+AGG	0.277435	5.2:-79976350	MS.gene81375:CDS
AAGAAAGGAAAAGTCTTTGT+AGG	0.456968	5.2:-79975929	MS.gene81375:CDS
ACCATCGGAGGAAGTAGAAG+TGG	0.600712	5.2:+79973469	None:intergenic
ACTACGTGGAACTTGTCAAT+GGG	0.522509	5.2:-79976731	MS.gene81375:CDS
ACTGAACCTGGGTCACCACC+AGG	0.584855	5.2:-79976814	MS.gene81375:CDS
AGAAGTGGAGGTGGAAGTGG+AGG	0.504345	5.2:+79973484	None:intergenic
AGAGAGGAAATTTGTGAGAA+AGG	0.411748	5.2:-79976544	MS.gene81375:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAACAATGAATTGG+AGG	-	chr5.2:79973810-79973829	MS.gene81375:intron	30.0%
AACAACATACAATAACAGAG+TGG	+	chr5.2:79974561-79974580	None:intergenic	30.0%
AAGAAAGGAAAAGTCTTTGT+AGG	-	chr5.2:79974315-79974334	MS.gene81375:intron	30.0%
AATAAAGATGAACCTTAGAG+AGG	+	chr5.2:79975477-79975496	None:intergenic	30.0%
AATTATCCCATATCAAGTGT+TGG	+	chr5.2:79975765-79975784	None:intergenic	30.0%
AATTCATAGTTATTAAGGGG+AGG	-	chr5.2:79975966-79975985	MS.gene81375:intron	30.0%
ACCAAATTAACCTAATATCC+CGG	+	chr5.2:79975412-79975431	None:intergenic	30.0%
ATATACTCCAACACTTGATA+TGG	-	chr5.2:79975755-79975774	MS.gene81375:intron	30.0%
CTAAAAAAATCAGCTTGGTT+TGG	+	chr5.2:79974287-79974306	None:intergenic	30.0%
GAAGATTAAGAAAAAATGGG+AGG	-	chr5.2:79973936-79973955	MS.gene81375:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	79973418	79976848	79973418	ID=MS.gene81375
chr5.2	mRNA	79973418	79976848	79973418	ID=MS.gene81375.t1;Parent=MS.gene81375
chr5.2	exon	79976041	79976848	79976041	ID=MS.gene81375.t1.exon1;Parent=MS.gene81375.t1
chr5.2	CDS	79976041	79976848	79976041	ID=cds.MS.gene81375.t1;Parent=MS.gene81375.t1
chr5.2	exon	79975792	79975953	79975792	ID=MS.gene81375.t1.exon2;Parent=MS.gene81375.t1
chr5.2	CDS	79975792	79975953	79975792	ID=cds.MS.gene81375.t1;Parent=MS.gene81375.t1
chr5.2	exon	79975175	79975444	79975175	ID=MS.gene81375.t1.exon3;Parent=MS.gene81375.t1
chr5.2	CDS	79975175	79975444	79975175	ID=cds.MS.gene81375.t1;Parent=MS.gene81375.t1
chr5.2	exon	79974339	79974407	79974339	ID=MS.gene81375.t1.exon4;Parent=MS.gene81375.t1
chr5.2	CDS	79974339	79974407	79974339	ID=cds.MS.gene81375.t1;Parent=MS.gene81375.t1
chr5.2	exon	79973418	79973740	79973418	ID=MS.gene81375.t1.exon5;Parent=MS.gene81375.t1
chr5.2	CDS	79973418	79973740	79973418	ID=cds.MS.gene81375.t1;Parent=MS.gene81375.t1

Gene Sequence

>MS.gene81375

ATGCAACCCAAAACTGAACCTGGGTCACCACCAGGTTCCAATTCCACAAAGCCTAACAATCTTGAAGACAAGTCTATTCATGATCTTGTTATGGTACTACGTGGAACTTGTCAATGGGAAACTTTTGATAGTGTTGAAGCTGTTTTGGAGAAGAGGGATATGAGACTCAGAGAGGAGAATCAAAAGTTGCAACAAAGCTTTGAAATGGAGAGATTAAAGCTTAGAGAGGAGTTTCACTTGGAGAGACTTTCAAGGGTGTATGCTGAGTCTGAATTTAAGAAAAGAGAGGAAATTTGTGAGAAAGGGAAGAAAGTGCAAGAAAGTTATGAAGCTCTTTTGAAAGAAGTTAAGGTAAATAGATTAGCTGATAGAAAAACTAATGAAGAGTTTGAAAAGAAGAACAATGAATTGGAGGTTGAAATTAAGAATTTGAAGGAGAAATGTGTTGATCGTAGCAATGAAGTTGATGTCTTAAGAACAAAGATTGTTGAATTAGAGGATGAAGTTTTAGAGTTAAAGAAGATTAAGAAAAAATGGGAGGAAGATGACATTGAATTGGGTGAATTAAGAAAAATGACTGGTGAATTAGAGAGCAAGGTTTTGGAGTTGACGAAGTCAAAGGAAAAGTGGCTAGATGATAAAAATGCTTTGGATGGACTTAAGGTTAAAATTGGAGAATTGGAGGAGACAGTAAAGAAGAATTTGGCAACGATGAGTGAGTTGAGGAATGAAAGCAGCAAATTGGCAGAGGAGAAGCGCGAAGCCGAGACATTACTTGAGGCTTTGAAGAGGAAGTTTATTCGACTGCGTGAAAGAGTAACAACCAGGGGCGGACCTGAACAGGTCCTGGTGTGGCAAGTGCCACACCAAACCAAGCTGATTTTTTTAGGTGCAGGTAAGAAAGGAAAAGTCTTTGTAGGTGCAGGTTTGTGTTTGCTGCTATCTGCCATCGGCTGCTTAGCAGTAGACCTTGTCTGTGAGTTTAGTTCTGCTGCTGGTGCTGTTTTGGGGCTGCTGTGTGTATGGTGTGTTGGCAGCTTGGGTGCTATGGCTTTTGGTGTATGACCTGCTGCGGCTGTTATTGCTGGTTTTGGTGTTTTAGTTCCTTTTCTTGTTGTATGGGGGGTTCCAGCAGCACAGCCACTCTGTTATTGTATGTTGTTATGGGCTTGGGCCTATATGTTATTGAAAATTTATCTTCTCACTTTGAAAATTGCTCATTTACACCCAAAATTTACTCTAATAACCCTGATTCAAGTTATCTGACGATTGTTGCAAGCGGTAGTTAACCCATGCTTGGAATTTAATTATTTGATAAAAAGTTGTGCCTCACCAATATTGGGAGTCCAGGTCCGCCCCTGGTAACAACGTTGGAGGAAGATCTCATTCTTTTGTCGGGCTTAGATGCCTCTATTGGTGGCAACAATGAGGGGGAGCCTTCTGCTGATCCAGTGGTTCCTAGTTCTGAAGAGAGCGAGGAAGAGCGTGTTCCAGTGGTTGATCCTTTTGAAGATAACGAGGACGAGAATGCTGGTGAAGATGAGTTCATAAATGACATTGTTGACGAGGCTGCTCCTTTACCAATAAATCAAGATGATCATTACACTCTTGGAGTTGCTGCTAGTACTCAGCCACCGAGCAAAGGGATCAAGGATGCTCAAGGTTCATCATCAGGTATATGGAAATTATGCATCCATCTCTTATTCCTATATAGATATGCATTTCTGAATATTATTTTATAAGTATTGAATTCAATATGTGTGATTGGATAAATGTTTGGTCCAGTATGCTCAACTAGTGATTGAGACTTTGTCAAAAACAAAACTAGTGATTGAAACAGATCACATTGAAATTCCATTAGCTAGTCATCATAATTTGCGATTACAGTATGACATAACTAGTACATACTCAATTAGCACCAGGATATTATATTATTATGGGCCTCTCTGGATATTATATAACTTTGTTAACTTAGATAAACTCAATTAGCACCGGGATATTAGGTTAATTTGGTCCTCTTTTGATAGAAGTTTAATTGTGATTTTTGAAGCTTCTTCCTCTCTAAGGTTCATCTTTATTCCATGTTACCTAGCCCAAGCAAGCTCTTGGCTCTCATAGCTGGATCTGATTTTCCTAAGGAAATGTAAGTAGCATTGACAGGAACTGTGGAAGCTCAAACAAATCTTACTTAGAACTTAGAATGAGATGTGTTATATATAGTAGCTATTTTCTGTTTCTGTTCTTTTTTTATCTTTTGAAACCATTTATTGTTTGTACTTTGAAGCTTGTTTAGAATATAATAGAATGTTCTTCTGTTTTGCACTTCCTCTTGTAGAGATATACTCCAACACTTGATATGGGATAATTGAGTGATTCTAAACATGCATTATTTCTTCATTTCACATGTTCCTTCAGACAGTTTTTTAGAGCATTTTCTGCAGGTGAAGAGTGTTGGATGGTATACGCTAGAAAGCCCAGGAAAACGGTTGAGATTACAGGGTCTTGTGGAGGTTAGTTATTCAGTAGCATGCAGAAGGTGTAGTGGAATAATTCATAGTTATTAAGGGGAGGTTTATTAGAGAATAGAGGATGTGAATGATGATTATTCACTTGTTCATCGAAAAGAAATATAGTGAAAATGTTTTTGGATTATCTGTTGAGGTTTGGTAGCAAGTGGATAAACTGTTTTTTGGATTATCTGTTGCGTTTTTCTTTTGATTTCTTCTCTTTCATATGTTTGATCTCTTCAAAAACTGTCAATCATCTTTTATGTGATTTCTTCCTCATCCCTTGAGGAAGTTTTCTTTCGAAAAAACAAAAATGAAAAACACACAAAATCAGGTAAATGTATTTTGTTTTTCCTAGGTAAACATGATTACAGCGTGCCTGCTGTATATATTATCTGATATTTTGAATTTGATTAATCATATATAGTCAATTACTTGAAGATCCAATGGCTGGATTTTCCTTGAAATGCTGAGGCTACTAGAAATGTTTTCATTGAAATAAAGAATCTACCATACCTTATTTTTCAAGTTTTTGTTTGAGTATTATCATGTTTAGCAAATGTTAGTTATGTATGCTTAAACATATCTCTTTTTGGACCAGCCGGTGGAAGAGTGAAACTGGAAAATGAGATTGAGATCATAAACCTTGATGACGACGACGACGATGATGATCAATCTATGTCTCAAGGAGTACATTTAAAGAAAGCTAGTTTTGGAATCACTGTGAAGATTGAAGAGCCAAGTTCATCAGCGGCACTGGCAACACAACAAAAAAGCAAATTTGCCAATGCAGTTGACACGGTCAAAAGAAAATTTTCTTTCAGCGACAGTGAAACCTCCACTTCCACCTCCACTTCTACTTCCTCCGATGGTTCATGTCTCGATAATCTTACAAGGTCTGATGCAAAAAAGAAAAAGATGTAG

Protein sequence

>MS.gene81375.t1

MQPKTEPGSPPGSNSTKPNNLEDKSIHDLVMVLRGTCQWETFDSVEAVLEKRDMRLREENQKLQQSFEMERLKLREEFHLERLSRVYAESEFKKREEICEKGKKVQESYEALLKEVKVNRLADRKTNEEFEKKNNELEVEIKNLKEKCVDRSNEVDVLRTKIVELEDEVLELKKIKKKWEEDDIELGELRKMTGELESKVLELTKSKEKWLDDKNALDGLKVKIGELEETVKKNLATMSELRNESSKLAEEKREAETLLEALKRKFIRLRKKGKVFVGAGLCLLLSAIGCLAVDLVCEFSSAAGAVLGLLCVWCVGSLGAMAFDASIGGNNEGEPSADPVVPSSEESEEERVPVVDPFEDNEDENAGEDEFINDIVDEAAPLPINQDDHYTLGVAASTQPPSKGIKDAQGSSSGEECWMVYARKPRKTVEITGSCGAGGRVKLENEIEIINLDDDDDDDDQSMSQGVHLKKASFGITVKIEEPSSSAALATQQKSKFANAVDTVKRKFSFSDSETSTSTSTSTSSDGSCLDNLTRSDAKKKKM