AlfalfaGEDB | MS.gene84712

M. sativa cultivar XinJiangDaYe / MS.gene84712

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0043167 GO:0043168
PFAM: PF07651.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84712.t1	XP_003601907.1	94.5	327	17	1	2	328	3	328	7.90E-168	599.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84712.t1	Q8L936	49.0	345	149	8	6	327	9	349	2.2e-73	277.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84712.t1	G7J365	94.5	327	17	1	2	328	3	328	5.7e-168	599.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene84712	0.823997	1.02E-53	-1.69E-46
MS.gene049217	MS.gene84712	-0.801127	1.04E-48	-1.69E-46
MS.gene049285	MS.gene84712	-0.814936	1.20E-51	-1.69E-46
MS.gene049320	MS.gene84712	-0.834178	3.48E-56	-1.69E-46
MS.gene049483	MS.gene84712	0.81253	4.05E-51	-1.69E-46
MS.gene049634	MS.gene84712	0.812868	3.41E-51	-1.69E-46
MS.gene04986	MS.gene84712	0.843147	1.68E-58	-1.69E-46
MS.gene05010	MS.gene84712	-0.829618	4.65E-55	-1.69E-46
MS.gene050163	MS.gene84712	-0.806482	8.05E-50	-1.69E-46
MS.gene050165	MS.gene84712	-0.828037	1.12E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84712.t1	MTR_3g086670	94.495	327	17	1	2	328	3	328	0.0	634
MS.gene84712.t1	MTR_8g089850	62.462	325	112	6	7	328	9	326	2.38e-131	377
MS.gene84712.t1	MTR_3g099670	36.237	287	172	4	2	279	5	289	1.26e-55	184
MS.gene84712.t1	MTR_4g115420	26.875	320	204	12	4	306	9	315	3.14e-17	82.8
MS.gene84712.t1	MTR_3g106900	34.014	147	92	3	4	147	6	150	2.65e-16	80.1
MS.gene84712.t1	MTR_2g037980	29.902	204	125	6	4	192	7	207	4.05e-16	79.3
MS.gene84712.t1	MTR_4g127440	28.571	196	122	5	5	185	8	200	5.62e-16	79.0
MS.gene84712.t1	MTR_8g008860	35.135	148	90	3	4	147	6	151	9.86e-15	75.1
MS.gene84712.t1	MTR_2g008170	33.108	148	93	3	4	147	6	151	3.06e-13	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84712.t1	AT4G40080	48.286	350	154	8	1	327	4	349	3.14e-100	300
MS.gene84712.t1	AT5G10410	31.875	320	182	9	7	301	8	316	1.36e-34	129
MS.gene84712.t1	AT5G65370	31.046	306	173	9	1	280	1	294	1.23e-31	120
MS.gene84712.t1	AT5G57200	30.049	203	125	6	4	192	7	206	9.80e-17	81.3
MS.gene84712.t1	AT4G25940	28.641	206	123	6	1	185	4	206	1.05e-16	81.3
MS.gene84712.t1	AT2G01600	30.667	225	137	8	1	210	4	224	8.50e-16	78.6
MS.gene84712.t1	AT4G02650	34.000	150	92	3	3	147	5	152	1.90e-14	74.3
MS.gene84712.t1	AT2G25430	31.973	147	95	3	4	147	5	149	5.23e-14	73.2
MS.gene84712.t1	AT1G14910	27.675	271	166	11	31	284	36	293	6.22e-14	73.2
MS.gene84712.t1	AT5G35200	29.947	187	121	6	4	185	11	192	1.09e-13	72.0

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Find 95 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGAGAGCTGATCACGG+AGG	0.785713	3.4:+80750589	None:intergenic
AAACTTGGTTGTCTTGGTTT+TGG	0.268735	3.4:-80750189	MS.gene84712:CDS
AACGGCGATTAAACATTTAA+GGG	0.462073	3.4:+80750641	None:intergenic
AACTCTCTTCTTGGGTTCGA+TGG	0.450996	3.4:-80750494	MS.gene84712:CDS
AAGAAACTGAAAGAGGTGAT+AGG	0.455772	3.4:-80750882	MS.gene84712:CDS
AAGAGAAACTGATTCTTTGT+TGG	0.385719	3.4:-80750361	MS.gene84712:CDS
AAGCTCCACCGCAGAGGATG+CGG	0.484245	3.4:+80750704	None:intergenic
AATTGAAGGAAAAGGTTGGG+AGG	0.600206	3.4:-80750056	MS.gene84712:CDS
ACAAAACAAGTTCAATATCT+TGG	0.345547	3.4:-80750518	MS.gene84712:CDS
ACAGAAGAACCGAGTCTGAT+CGG	0.577525	3.4:-80749984	MS.gene84712:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGGCGATTAAACATTTAA+GGG	+	chr3.4:80750168-80750187	None:intergenic	30.0%
GGTTAGAGTTAAAGAATTTG+GGG	-	chr3.4:80750586-80750605	MS.gene84712:CDS	30.0%
TTCTCTTAACAGATCACTAT+TGG	+	chr3.4:80750432-80750451	None:intergenic	30.0%
AAGAAACTGAAAGAGGTGAT+AGG	-	chr3.4:80749924-80749943	MS.gene84712:CDS	35.0%
AGAGAATTGAAGGAAAAGGT+TGG	-	chr3.4:80750746-80750765	MS.gene84712:CDS	35.0%
AGAGGTGATAGGATTAATGA+AGG	-	chr3.4:80749935-80749954	MS.gene84712:CDS	35.0%
AGTTAAAGAATTTGGGGAGA+GGG	-	chr3.4:80750592-80750611	MS.gene84712:CDS	35.0%
CAAGGTGATTGTTGAGATAA+TGG	-	chr3.4:80750520-80750539	MS.gene84712:CDS	35.0%
GAACGGCGATTAAACATTTA+AGG	+	chr3.4:80750169-80750188	None:intergenic	35.0%
GAGAATTGAAGGAAAAGGTT+GGG	-	chr3.4:80750747-80750766	MS.gene84712:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	80749921	80750907	80749921	ID=MS.gene84712
chr3.4	mRNA	80749921	80750907	80749921	ID=MS.gene84712.t1;Parent=MS.gene84712
chr3.4	exon	80749921	80750907	80749921	ID=MS.gene84712.t1.exon1;Parent=MS.gene84712.t1
chr3.4	CDS	80749921	80750907	80749921	ID=cds.MS.gene84712.t1;Parent=MS.gene84712.t1

Gene Sequence

>MS.gene84712

ATGAAGAAACTGAAAGAGGTGATAGGATTAATGAAGGATAAAGCATCACAAAGCAAAGCTGCAATTTTATCAAAACGCAAAACTCTCTTCCTCCTACGTGCCACAACACATGACTCTTTCAACCCTCCAAAACACAAACACCTCTTGACTCTTCTTTCCTCTGGAGACGGTTCACGTGCCACCGCATCCTCTGCGGTGGAGCTTCTCATGGACCGTCTCCAAACCACTCACAACTCAGCAGTAGCCCTTAAATGTTTAATCGCCGTTCACCACATCATCAAACACGGTACCTTCATCCTCCGTGATCAGCTCTCCGTTTACCCTTACACTGGTGGTAGAAACTACCTCAACCTCTCAAACTTCAGAGACAAAACAAGTTCAATATCTTGGGAACTCTCTTCTTGGGTTCGATGGTACGCGGAATACATTGAAAACCTTCTGTGTGCTTCTAGAACTCTTGGTTTCTTCCTTGGTGAAACGACGTCAGAGAAAGGAGTTTCTTATCTTACCAATAGTGATCTGTTAAGAGAAACTGATTCTTTGTTGGCCTTGATGGAAGGAATTGGGAAAAGACCTAATACTCCAATGAGTGAACAGAACAAGGTGATTGTTGAGATAATGGATTTGGTGGAAGATGATGGGGTTATGGTGATGAATGAAGTTTTGGTTAGAGTTAAAGAATTTGGGGAGAGGGAGAAACTTGGTTGTCTTGGTTTTGGAGAAGTGGTGGAATTGGTTTGTGTTTTGAAGAGATTGGAAATATGCAGAGAGAGAATGATGATGATGATGGAGGTGGTTGAGGAGAAGAAATTCTGGGATTTGGTGAGAGAATTGAAGGAAAAGGTTGGGAGGATGAAGGTGTATAGGGAAGAAGGGAGGCTTAGCAGTACGGTGACAAAAGACAGAAGAACCGAGTCTGATCGGTTTGATGACAGAGTTCTTAGGTCTGTTGATTCCATTAGGTTTCCTTCTTCAAGGTTCTTGTAA

Protein sequence

>MS.gene84712.t1

MKKLKEVIGLMKDKASQSKAAILSKRKTLFLLRATTHDSFNPPKHKHLLTLLSSGDGSRATASSAVELLMDRLQTTHNSAVALKCLIAVHHIIKHGTFILRDQLSVYPYTGGRNYLNLSNFRDKTSSISWELSSWVRWYAEYIENLLCASRTLGFFLGETTSEKGVSYLTNSDLLRETDSLLALMEGIGKRPNTPMSEQNKVIVEIMDLVEDDGVMVMNEVLVRVKEFGEREKLGCLGFGEVVELVCVLKRLEICRERMMMMMEVVEEKKFWDLVRELKEKVGRMKVYREEGRLSSTVTKDRRTESDRFDDRVLRSVDSIRFPSSRFL