Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92668.t1 | XP_003599439.1 | 89.5 | 267 | 21 | 1 | 1 | 260 | 137 | 403 | 5.00E-125 | 457.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92668.t1 | Q9ZSL6 | 58.3 | 247 | 103 | 0 | 12 | 258 | 168 | 414 | 4.4e-77 | 289.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92668.t1 | G7J0X0 | 89.5 | 267 | 21 | 1 | 1 | 260 | 137 | 403 | 3.6e-125 | 457.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene92668 | 0.801559 | 8.50E-49 | -1.69E-46 |
| MS.gene049170 | MS.gene92668 | 0.804454 | 2.14E-49 | -1.69E-46 |
| MS.gene049993 | MS.gene92668 | 0.817353 | 3.45E-52 | -1.69E-46 |
| MS.gene050060 | MS.gene92668 | 0.820826 | 5.59E-53 | -1.69E-46 |
| MS.gene050315 | MS.gene92668 | 0.80541 | 1.35E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene92668 | 0.824547 | 7.61E-54 | -1.69E-46 |
| MS.gene050404 | MS.gene92668 | 0.81475 | 1.31E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene92668 | 0.855181 | 7.50E-62 | -1.69E-46 |
| MS.gene050426 | MS.gene92668 | -0.879048 | 1.71E-69 | -1.69E-46 |
| MS.gene050464 | MS.gene92668 | 0.843506 | 1.34E-58 | -1.69E-46 |
| MS.gene050529 | MS.gene92668 | 0.85059 | 1.54E-60 | -1.69E-46 |
| MS.gene050642 | MS.gene92668 | 0.834148 | 3.54E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene92668 | 0.818246 | 2.17E-52 | -1.69E-46 |
| MS.gene051171 | MS.gene92668 | 0.853904 | 1.76E-61 | -1.69E-46 |
| MS.gene051208 | MS.gene92668 | 0.832014 | 1.20E-55 | -1.69E-46 |
| MS.gene051240 | MS.gene92668 | 0.821753 | 3.41E-53 | -1.69E-46 |
| MS.gene051242 | MS.gene92668 | 0.839651 | 1.39E-57 | -1.69E-46 |
| MS.gene051244 | MS.gene92668 | 0.802275 | 6.06E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene92668 | 0.829557 | 4.82E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene92668 | 0.845002 | 5.33E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene92668 | 0.824251 | 8.93E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene92668 | -0.851173 | 1.05E-60 | -1.69E-46 |
| MS.gene052077 | MS.gene92668 | 0.85295 | 3.30E-61 | -1.69E-46 |
| MS.gene052134 | MS.gene92668 | 0.860299 | 2.28E-63 | -1.69E-46 |
| MS.gene052135 | MS.gene92668 | 0.8544 | 1.26E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene92668 | 0.839282 | 1.74E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene92668 | 0.802887 | 4.53E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene92668 | 0.831201 | 1.91E-55 | -1.69E-46 |
| MS.gene052469 | MS.gene92668 | 0.819435 | 1.16E-52 | -1.69E-46 |
| MS.gene052589 | MS.gene92668 | 0.801478 | 8.84E-49 | -1.69E-46 |
| MS.gene052590 | MS.gene92668 | 0.810664 | 1.03E-50 | -1.69E-46 |
| MS.gene052758 | MS.gene92668 | 0.827622 | 1.41E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene92668 | 0.893959 | 3.86E-75 | -1.69E-46 |
| MS.gene053836 | MS.gene92668 | 0.813612 | 2.34E-51 | -1.69E-46 |
| MS.gene053907 | MS.gene92668 | 0.812679 | 3.75E-51 | -1.69E-46 |
| MS.gene053971 | MS.gene92668 | 0.841636 | 4.21E-58 | -1.69E-46 |
| MS.gene054102 | MS.gene92668 | 0.816845 | 4.48E-52 | -1.69E-46 |
| MS.gene054110 | MS.gene92668 | 0.808912 | 2.45E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene92668 | 0.808341 | 3.25E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene92668 | 0.819481 | 1.14E-52 | -1.69E-46 |
| MS.gene054719 | MS.gene92668 | 0.838516 | 2.75E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene92668 | 0.818517 | 1.88E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene92668 | 0.811864 | 5.66E-51 | -1.69E-46 |
| MS.gene055217 | MS.gene92668 | 0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene92668 | 0.873117 | 1.88E-67 | -1.69E-46 |
| MS.gene055428 | MS.gene92668 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene92668 | 0.878003 | 3.99E-69 | -1.69E-46 |
| MS.gene056305 | MS.gene92668 | 0.835818 | 1.34E-56 | -1.69E-46 |
| MS.gene056337 | MS.gene92668 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene056451 | MS.gene92668 | 0.823116 | 1.65E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene92668 | 0.818961 | 1.49E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene92668 | 0.887833 | 1.01E-72 | -1.69E-46 |
| MS.gene056664 | MS.gene92668 | 0.818044 | 2.41E-52 | -1.69E-46 |
| MS.gene056723 | MS.gene92668 | 0.805238 | 1.47E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene92668 | 0.800779 | 1.23E-48 | -1.69E-46 |
| MS.gene056899 | MS.gene92668 | -0.832335 | 1.00E-55 | -1.69E-46 |
| MS.gene056979 | MS.gene92668 | 0.818303 | 2.10E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene92668 | 0.808589 | 2.88E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene92668 | 0.801626 | 8.24E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene92668 | 0.80921 | 2.12E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene92668 | 0.815767 | 7.81E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene92668 | 0.861569 | 9.36E-64 | -1.69E-46 |
| MS.gene058233 | MS.gene92668 | 0.845195 | 4.73E-59 | -1.69E-46 |
| MS.gene058276 | MS.gene92668 | 0.862021 | 6.81E-64 | -1.69E-46 |
| MS.gene058710 | MS.gene92668 | 0.82316 | 1.61E-53 | -1.69E-46 |
| MS.gene058746 | MS.gene92668 | 0.896653 | 3.00E-76 | -1.69E-46 |
| MS.gene059011 | MS.gene92668 | 0.827512 | 1.50E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene92668 | 0.810236 | 1.27E-50 | -1.69E-46 |
| MS.gene059247 | MS.gene92668 | 0.842363 | 2.71E-58 | -1.69E-46 |
| MS.gene059285 | MS.gene92668 | 0.816343 | 5.81E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene92668 | 0.819861 | 9.30E-53 | -1.69E-46 |
| MS.gene059512 | MS.gene92668 | 0.839487 | 1.54E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene92668 | 0.829487 | 5.01E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene92668 | 0.826103 | 3.26E-54 | -1.69E-46 |
| MS.gene060407 | MS.gene92668 | 0.855334 | 6.77E-62 | -1.69E-46 |
| MS.gene061049 | MS.gene92668 | 0.84439 | 7.79E-59 | -1.69E-46 |
| MS.gene061114 | MS.gene92668 | -0.824767 | 6.75E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene92668 | 0.822082 | 2.87E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene92668 | 0.806365 | 8.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032180 | MS.gene92668 | PPI |
| MS.gene052009 | MS.gene92668 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92668.t1 | MTR_3g033420 | 89.513 | 267 | 21 | 1 | 1 | 260 | 137 | 403 | 3.97e-167 | 468 |
| MS.gene92668.t1 | MTR_3g033150 | 92.857 | 154 | 11 | 0 | 107 | 260 | 1 | 154 | 4.13e-93 | 271 |
| MS.gene92668.t1 | MTR_7g101840 | 37.247 | 247 | 155 | 0 | 13 | 259 | 307 | 553 | 1.38e-47 | 166 |
| MS.gene92668.t1 | MTR_3g118290 | 35.865 | 237 | 152 | 0 | 24 | 260 | 335 | 571 | 4.22e-45 | 159 |
| MS.gene92668.t1 | MTR_1g063850 | 34.034 | 238 | 157 | 0 | 22 | 259 | 320 | 557 | 4.31e-40 | 145 |
| MS.gene92668.t1 | MTR_0172s0030 | 39.076 | 238 | 137 | 4 | 17 | 248 | 255 | 490 | 1.96e-39 | 143 |
| MS.gene92668.t1 | MTR_1g007370 | 32.258 | 248 | 161 | 2 | 13 | 259 | 306 | 547 | 8.52e-36 | 134 |
| MS.gene92668.t1 | MTR_3g090900 | 27.519 | 258 | 180 | 4 | 7 | 260 | 260 | 514 | 1.12e-16 | 79.7 |
| MS.gene92668.t1 | MTR_1g007370 | 38.202 | 89 | 55 | 0 | 13 | 101 | 306 | 394 | 1.91e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92668.t1 | AT5G13730 | 58.300 | 247 | 103 | 0 | 12 | 258 | 168 | 414 | 2.25e-100 | 299 |
| MS.gene92668.t1 | AT2G36990 | 35.146 | 239 | 155 | 0 | 21 | 259 | 305 | 543 | 1.92e-45 | 160 |
| MS.gene92668.t1 | AT1G08540 | 35.021 | 237 | 154 | 0 | 24 | 260 | 333 | 569 | 2.12e-43 | 155 |
| MS.gene92668.t1 | AT1G64860 | 38.776 | 245 | 136 | 5 | 13 | 248 | 249 | 488 | 1.38e-39 | 144 |
| MS.gene92668.t1 | AT3G53920 | 31.933 | 238 | 161 | 1 | 23 | 259 | 332 | 569 | 4.18e-34 | 129 |
| MS.gene92668.t1 | AT1G64860 | 38.117 | 223 | 124 | 5 | 13 | 226 | 249 | 466 | 8.00e-33 | 125 |
| MS.gene92668.t1 | AT5G24120 | 25.688 | 218 | 154 | 3 | 46 | 260 | 305 | 517 | 5.93e-15 | 74.7 |
| MS.gene92668.t1 | AT5G24120 | 25.688 | 218 | 154 | 3 | 46 | 260 | 305 | 517 | 5.93e-15 | 74.7 |
| MS.gene92668.t1 | AT5G24120 | 25.688 | 218 | 154 | 3 | 46 | 260 | 305 | 517 | 5.93e-15 | 74.7 |
| MS.gene92668.t1 | AT3G53920 | 40.506 | 79 | 47 | 0 | 23 | 101 | 332 | 410 | 2.00e-14 | 72.8 |
Find 46 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGCTCTGTCCAATGAAAT+TGG | 0.295581 | 3.1:+23814038 | None:intergenic |
| ACAAGGCATGATTAAAGCTT+TGG | 0.334814 | 3.1:-23814828 | MS.gene92668:CDS |
| TATTTATAGGGAGAAAAGTA+TGG | 0.343959 | 3.1:-23814197 | MS.gene92668:intron |
| GGAACCATTGGGCTTCTTCA+TGG | 0.361844 | 3.1:-23814914 | MS.gene92668:CDS |
| ATATTATACTTTGGACTCAA+TGG | 0.405310 | 3.1:-23813751 | MS.gene92668:CDS |
| TTCTCCGGAATCATTTCAAC+TGG | 0.414074 | 3.1:+23813853 | None:intergenic |
| GAGCAGACAACCAATTTCAT+TGG | 0.418328 | 3.1:-23814048 | MS.gene92668:CDS |
| AAGCATTCAAGATCTCATTC+AGG | 0.419494 | 3.1:-23815013 | MS.gene92668:intron |
| AGCTGTCTACATATGTTTAC+TGG | 0.421708 | 3.1:-23814859 | MS.gene92668:CDS |
| GGAGAAAATGTTTGAGAGAC+AGG | 0.428727 | 3.1:-23813836 | MS.gene92668:CDS |
| CACCGGTAATCTGACTAATC+TGG | 0.431896 | 3.1:+23814796 | None:intergenic |
| GAGATTGTAATATTATACTT+TGG | 0.445378 | 3.1:-23813760 | MS.gene92668:CDS |
| GTCCAGATTAGTCAGATTAC+CGG | 0.449365 | 3.1:-23814798 | MS.gene92668:intron |
| GGGACCAGTTGAAATGATTC+CGG | 0.449561 | 3.1:-23813857 | MS.gene92668:CDS |
| CTATCTCCTCAAAAGACAAA+GGG | 0.452640 | 3.1:+23813722 | None:intergenic |
| GAGAAATTTGATCCGGATAG+AGG | 0.468549 | 3.1:-23814887 | MS.gene92668:CDS |
| GAAAGCTGTTGAAACTATCA+AGG | 0.471546 | 3.1:-23813699 | MS.gene92668:CDS |
| GAGAGACAGGTAATGAAGGA+AGG | 0.490016 | 3.1:-23813823 | MS.gene92668:CDS |
| GTTTGAGAGACAGGTAATGA+AGG | 0.499603 | 3.1:-23813827 | MS.gene92668:CDS |
| AGAGACAGGTAATGAAGGAA+GGG | 0.501313 | 3.1:-23813822 | MS.gene92668:CDS |
| TTTAACCAGGAAGGAACCAT+TGG | 0.506733 | 3.1:-23814926 | MS.gene92668:intron |
| TCAATCGCAACACGTTATCA+AGG | 0.511860 | 3.1:-23815045 | MS.gene92668:CDS |
| GAGAGGATCAGACAGATTCA+TGG | 0.512718 | 3.1:-23813676 | MS.gene92668:CDS |
| GACAGCTTACATCCTCTATC+CGG | 0.518858 | 3.1:+23814875 | None:intergenic |
| TGGAGCAGAGAAATTTGATC+CGG | 0.520546 | 3.1:-23814894 | MS.gene92668:CDS |
| GCAACACGTTATCAAGGAAA+AGG | 0.522492 | 3.1:-23815039 | MS.gene92668:CDS |
| TATAATGCAGGAGATTATAC+CGG | 0.529279 | 3.1:-23813878 | MS.gene92668:intron |
| CTGTAAAACTTGTTTCTGAA+AGG | 0.534187 | 3.1:-23814070 | MS.gene92668:CDS |
| CCTATCTCCTCAAAAGACAA+AGG | 0.538706 | 3.1:+23813721 | None:intergenic |
| TTAACCAGGAAGGAACCATT+GGG | 0.543281 | 3.1:-23814925 | MS.gene92668:intron |
| GGAATCATTTCAACTGGTCC+CGG | 0.544959 | 3.1:+23813859 | None:intergenic |
| TCAGCAATTTCATTATATGT+CGG | 0.554776 | 3.1:+23814116 | None:intergenic |
| AAAGAATGACAGAACATGAA+AGG | 0.564645 | 3.1:-23815158 | None:intergenic |
| ATAGGGAGAAAAGTATGGAA+TGG | 0.569556 | 3.1:-23814192 | MS.gene92668:intron |
| TGTTGAAACTATCAAGGGAG+AGG | 0.571469 | 3.1:-23813693 | MS.gene92668:CDS |
| GAGACAGGTAATGAAGGAAG+GGG | 0.571902 | 3.1:-23813821 | MS.gene92668:CDS |
| TGCTCCATGAAGAAGCCCAA+TGG | 0.593800 | 3.1:+23814910 | None:intergenic |
| TGTCTACATATGTTTACTGG+TGG | 0.613609 | 3.1:-23814856 | MS.gene92668:CDS |
| GTTTACTGGTGGATTAAACA+AGG | 0.614224 | 3.1:-23814845 | MS.gene92668:CDS |
| TCAGAGCAACTTAATACTGA+AGG | 0.620679 | 3.1:-23814009 | MS.gene92668:intron |
| ATAATGCAGGAGATTATACC+GGG | 0.633370 | 3.1:-23813877 | MS.gene92668:intron |
| AAAGCTGTTGAAACTATCAA+GGG | 0.636294 | 3.1:-23813698 | MS.gene92668:CDS |
| GACATATAATGAAATTGCTG+AGG | 0.644481 | 3.1:-23814114 | MS.gene92668:CDS |
| TATCTCCTCAAAAGACAAAG+GGG | 0.686203 | 3.1:+23813723 | None:intergenic |
| AGATTAGCTCGTGATTATCG+CGG | 0.696504 | 3.1:-23815078 | MS.gene92668:CDS |
| ATGTCTTAAGACGAAGACTG+AGG | 0.725315 | 3.1:-23814145 | MS.gene92668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAACATTTTTTG+GGG | - | chr3.1:23814000-23814019 | MS.gene92668:intron | 10.0% |
| !!! | TTTTTTATAACATTTTTTGG+GGG | - | chr3.1:23814001-23814020 | MS.gene92668:intron | 15.0% |
| !! | AACTGTTTATTATGAATGTT+TGG | - | chr3.1:23814536-23814555 | MS.gene92668:intron | 20.0% |
| !! | ATAAAAAAAATTTGTCTCAC+CGG | + | chr3.1:23813989-23814008 | None:intergenic | 20.0% |
| !! | ATAAACCGGAAAAATAAAAT+TGG | - | chr3.1:23814431-23814450 | MS.gene92668:intron | 20.0% |
| !! | GAGATTGTAATATTATACTT+TGG | - | chr3.1:23815005-23815024 | MS.gene92668:intron | 20.0% |
| !!! | ACTATTTTACAACTATTCTA+AGG | - | chr3.1:23814065-23814084 | MS.gene92668:CDS | 20.0% |
| !!! | AGTAACCAATTTTATTTTTC+CGG | + | chr3.1:23814439-23814458 | None:intergenic | 20.0% |
| !!! | ATTTGTTAAAGTTTCTCATT+AGG | - | chr3.1:23813804-23813823 | MS.gene92668:CDS | 20.0% |
| !!! | TACAATTTCATTCGTATTTT+AGG | - | chr3.1:23814782-23814801 | MS.gene92668:intron | 20.0% |
| !!! | TGGTTAGTTTGTTATTTATA+GGG | - | chr3.1:23814556-23814575 | MS.gene92668:intron | 20.0% |
| !!! | TTGGTTAGTTTGTTATTTAT+AGG | - | chr3.1:23814555-23814574 | MS.gene92668:intron | 20.0% |
| !!! | TTTATTTTTCCGGTTTATAA+CGG | + | chr3.1:23814429-23814448 | None:intergenic | 20.0% |
| ! | AACCAATCATATGCTAAATT+TGG | - | chr3.1:23814217-23814236 | MS.gene92668:intron | 25.0% |
| ! | ATATTATACTTTGGACTCAA+TGG | - | chr3.1:23815014-23815033 | MS.gene92668:CDS | 25.0% |
| ! | TATTTATAGGGAGAAAAGTA+TGG | - | chr3.1:23814568-23814587 | MS.gene92668:intron | 25.0% |
| ! | TCAGCAATTTCATTATATGT+CGG | + | chr3.1:23814652-23814671 | None:intergenic | 25.0% |
| ! | TGTTTACTATGATATAATGC+AGG | - | chr3.1:23814875-23814894 | MS.gene92668:CDS | 25.0% |
| ! | TTTAATTCATTTAACCAGGA+AGG | - | chr3.1:23813830-23813849 | MS.gene92668:CDS | 25.0% |
| !!! | GCATTTTAATTCATTTAACC+AGG | - | chr3.1:23813826-23813845 | MS.gene92668:CDS | 25.0% |
| AAAGCTGTTGAAACTATCAA+GGG | - | chr3.1:23815067-23815086 | MS.gene92668:CDS | 30.0% | |
| AGTGATATACCGTTATAAAC+CGG | - | chr3.1:23814417-23814436 | MS.gene92668:intron | 30.0% | |
| CACCAAATTTAGCATATGAT+TGG | + | chr3.1:23814222-23814241 | None:intergenic | 30.0% | |
| CGTGAATTGTGAAAACTTAA+CGG | + | chr3.1:23814257-23814276 | None:intergenic | 30.0% | |
| GACATATAATGAAATTGCTG+AGG | - | chr3.1:23814651-23814670 | MS.gene92668:intron | 30.0% | |
| TATAATGCAGGAGATTATAC+CGG | - | chr3.1:23814887-23814906 | MS.gene92668:CDS | 30.0% | |
| TTGATTAGACGAAGTTAGTT+AGG | - | chr3.1:23814292-23814311 | MS.gene92668:intron | 30.0% | |
| ! | ACTTTTACTGACGTATGTTT+TGG | + | chr3.1:23814362-23814381 | None:intergenic | 30.0% |
| ! | CACTATTTTCATAGTCTCTT+TGG | - | chr3.1:23814462-23814481 | MS.gene92668:intron | 30.0% |
| !! | CTGTAAAACTTGTTTCTGAA+AGG | - | chr3.1:23814695-23814714 | MS.gene92668:intron | 30.0% |
| AAAAACAACCATGTTGCTCA+AGG | + | chr3.1:23814186-23814205 | None:intergenic | 35.0% | |
| AAGCATTCAAGATCTCATTC+AGG | - | chr3.1:23813752-23813771 | MS.gene92668:CDS | 35.0% | |
| ACAAGGCATGATTAAAGCTT+TGG | - | chr3.1:23813937-23813956 | MS.gene92668:intron | 35.0% | |
| AGCTGTCTACATATGTTTAC+TGG | - | chr3.1:23813906-23813925 | MS.gene92668:intron | 35.0% | |
| ATAATGCAGGAGATTATACC+GGG | - | chr3.1:23814888-23814907 | MS.gene92668:CDS | 35.0% | |
| CTATCTCCTCAAAAGACAAA+GGG | + | chr3.1:23815046-23815065 | None:intergenic | 35.0% | |
| GAAAGCTGTTGAAACTATCA+AGG | - | chr3.1:23815066-23815085 | MS.gene92668:CDS | 35.0% | |
| TAGACGAAGTTAGTTAGGTA+TGG | - | chr3.1:23814297-23814316 | MS.gene92668:intron | 35.0% | |
| TATCTCCTCAAAAGACAAAG+GGG | + | chr3.1:23815045-23815064 | None:intergenic | 35.0% | |
| TCAGAGCAACTTAATACTGA+AGG | - | chr3.1:23814756-23814775 | MS.gene92668:intron | 35.0% | |
| TGTCTACATATGTTTACTGG+TGG | - | chr3.1:23813909-23813928 | MS.gene92668:intron | 35.0% | |
| ! | ATAGCTCTGTCCAATGAAAT+TGG | + | chr3.1:23814730-23814749 | None:intergenic | 35.0% |
| ! | ATAGGGAGAAAAGTATGGAA+TGG | - | chr3.1:23814573-23814592 | MS.gene92668:intron | 35.0% |
| ! | TGTCTCTCAAACATTTTCTC+CGG | + | chr3.1:23814930-23814949 | None:intergenic | 35.0% |
| !! | GATTTTAACCTTGAGCAACA+TGG | - | chr3.1:23814175-23814194 | MS.gene92668:CDS | 35.0% |
| !! | GTTTACTGGTGGATTAAACA+AGG | - | chr3.1:23813920-23813939 | MS.gene92668:intron | 35.0% |
| AATGGTTGCAAAAATCGCAG+AGG | - | chr3.1:23814591-23814610 | MS.gene92668:intron | 40.0% | |
| AGAGACAGGTAATGAAGGAA+GGG | - | chr3.1:23814943-23814962 | MS.gene92668:intron | 40.0% | |
| ATGTCTTAAGACGAAGACTG+AGG | - | chr3.1:23814620-23814639 | MS.gene92668:intron | 40.0% | |
| CCTATCTCCTCAAAAGACAA+AGG | + | chr3.1:23815047-23815066 | None:intergenic | 40.0% | |
| GAGAAATTTGATCCGGATAG+AGG | - | chr3.1:23813878-23813897 | MS.gene92668:intron | 40.0% | |
| GAGCAGACAACCAATTTCAT+TGG | - | chr3.1:23814717-23814736 | MS.gene92668:intron | 40.0% | |
| GCAACACGTTATCAAGGAAA+AGG | - | chr3.1:23813726-23813745 | MS.gene92668:CDS | 40.0% | |
| GGAGAAAATGTTTGAGAGAC+AGG | - | chr3.1:23814929-23814948 | MS.gene92668:intron | 40.0% | |
| GTTTGAGAGACAGGTAATGA+AGG | - | chr3.1:23814938-23814957 | MS.gene92668:intron | 40.0% | |
| TCAATCGCAACACGTTATCA+AGG | - | chr3.1:23813720-23813739 | MS.gene92668:CDS | 40.0% | |
| TGGAGCAGAGAAATTTGATC+CGG | - | chr3.1:23813871-23813890 | MS.gene92668:CDS | 40.0% | |
| TGTTGAAACTATCAAGGGAG+AGG | - | chr3.1:23815072-23815091 | MS.gene92668:CDS | 40.0% | |
| TTAACCAGGAAGGAACCATT+GGG | - | chr3.1:23813840-23813859 | MS.gene92668:CDS | 40.0% | |
| TTAGTTAGGTATGGTGCATG+CGG | - | chr3.1:23814306-23814325 | MS.gene92668:intron | 40.0% | |
| TTCTCCGGAATCATTTCAAC+TGG | + | chr3.1:23814915-23814934 | None:intergenic | 40.0% | |
| TTTAACCAGGAAGGAACCAT+TGG | - | chr3.1:23813839-23813858 | MS.gene92668:CDS | 40.0% | |
| ! | AGATTAGCTCGTGATTATCG+CGG | - | chr3.1:23813687-23813706 | MS.gene92668:CDS | 40.0% |
| ! | GTCCAGATTAGTCAGATTAC+CGG | - | chr3.1:23813967-23813986 | MS.gene92668:intron | 40.0% |
| !! | CCTTTGTCTTTTGAGGAGAT+AGG | - | chr3.1:23815044-23815063 | MS.gene92668:CDS | 40.0% |
| !!! | ATAACATTTTTTGGGGGCGA+GGG | - | chr3.1:23814007-23814026 | MS.gene92668:intron | 40.0% |
| !!! | TATAACATTTTTTGGGGGCG+AGG | - | chr3.1:23814006-23814025 | MS.gene92668:intron | 40.0% |
| CACCGGTAATCTGACTAATC+TGG | + | chr3.1:23813972-23813991 | None:intergenic | 45.0% | |
| GACAGCTTACATCCTCTATC+CGG | + | chr3.1:23813893-23813912 | None:intergenic | 45.0% | |
| GAGACAGGTAATGAAGGAAG+GGG | - | chr3.1:23814944-23814963 | MS.gene92668:intron | 45.0% | |
| GAGAGACAGGTAATGAAGGA+AGG | - | chr3.1:23814942-23814961 | MS.gene92668:intron | 45.0% | |
| GAGAGGATCAGACAGATTCA+TGG | - | chr3.1:23815089-23815108 | MS.gene92668:CDS | 45.0% | |
| GGAATCATTTCAACTGGTCC+CGG | + | chr3.1:23814909-23814928 | None:intergenic | 45.0% | |
| GGGACCAGTTGAAATGATTC+CGG | - | chr3.1:23814908-23814927 | MS.gene92668:CDS | 45.0% | |
| TATTTGAACCGCGTCTCTTG+AGG | - | chr3.1:23814089-23814108 | MS.gene92668:CDS | 45.0% | |
| ! | AGAGACCCCTTTGTCTTTTG+AGG | - | chr3.1:23815037-23815056 | MS.gene92668:CDS | 45.0% |
| !!! | TAACATTTTTTGGGGGCGAG+GGG | - | chr3.1:23814008-23814027 | MS.gene92668:intron | 45.0% |
| !!! | ATTTTTTTTATAACATTTTT+TGG | - | chr3.1:23813998-23814017 | MS.gene92668:intron | 5.0% |
| !!! | TTTTTTTTATAACATTTTTT+GGG | - | chr3.1:23813999-23814018 | MS.gene92668:intron | 5.0% |
| CCTTGTAACCTCAAGAGACG+CGG | + | chr3.1:23814100-23814119 | None:intergenic | 50.0% | |
| GGAACCATTGGGCTTCTTCA+TGG | - | chr3.1:23813851-23813870 | MS.gene92668:CDS | 50.0% | |
| TGCTCCATGAAGAAGCCCAA+TGG | + | chr3.1:23813858-23813877 | None:intergenic | 50.0% | |
| CCGCGTCTCTTGAGGTTACA+AGG | - | chr3.1:23814097-23814116 | MS.gene92668:CDS | 55.0% | |
| GAAGCCCAATGGTTCCTTCC+TGG | + | chr3.1:23813847-23813866 | None:intergenic | 55.0% | |
| GTTAGGTATGGTGCATGCGG+AGG | - | chr3.1:23814309-23814328 | MS.gene92668:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 23813612 | 23815175 | 23813612 | ID=MS.gene92668 |
| chr3.1 | mRNA | 23813612 | 23815175 | 23813612 | ID=MS.gene92668.t1;Parent=MS.gene92668 |
| chr3.1 | exon | 23815014 | 23815175 | 23815014 | ID=MS.gene92668.t1.exon1;Parent=MS.gene92668.t1 |
| chr3.1 | CDS | 23815014 | 23815175 | 23815014 | ID=cds.MS.gene92668.t1;Parent=MS.gene92668.t1 |
| chr3.1 | exon | 23814799 | 23814939 | 23814799 | ID=MS.gene92668.t1.exon2;Parent=MS.gene92668.t1 |
| chr3.1 | CDS | 23814799 | 23814939 | 23814799 | ID=cds.MS.gene92668.t1;Parent=MS.gene92668.t1 |
| chr3.1 | exon | 23814010 | 23814210 | 23814010 | ID=MS.gene92668.t1.exon3;Parent=MS.gene92668.t1 |
| chr3.1 | CDS | 23814010 | 23814210 | 23814010 | ID=cds.MS.gene92668.t1;Parent=MS.gene92668.t1 |
| chr3.1 | exon | 23813612 | 23813890 | 23813612 | ID=MS.gene92668.t1.exon4;Parent=MS.gene92668.t1 |
| chr3.1 | CDS | 23813612 | 23813890 | 23813612 | ID=cds.MS.gene92668.t1;Parent=MS.gene92668.t1 |
| Gene Sequence |
| Protein sequence |
