Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95236.t1 | XP_024628067.1 | 96.1 | 310 | 12 | 0 | 1 | 310 | 16 | 325 | 5.40E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95236.t1 | B9DI20 | 45.5 | 308 | 120 | 10 | 8 | 294 | 20 | 300 | 7.1e-58 | 225.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95236.t1 | A0A072TVW9 | 96.1 | 310 | 12 | 0 | 1 | 310 | 16 | 325 | 3.9e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95236.t1 | TF | SBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene95236 | 0.816276 | 6.01E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene95236 | 0.810407 | 1.17E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene95236 | 0.824557 | 7.57E-54 | -1.69E-46 |
| MS.gene049979 | MS.gene95236 | 0.802754 | 4.83E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene95236 | 0.839025 | 2.03E-57 | -1.69E-46 |
| MS.gene050137 | MS.gene95236 | 0.801659 | 8.11E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene95236 | 0.800262 | 1.56E-48 | -1.69E-46 |
| MS.gene050228 | MS.gene95236 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene050438 | MS.gene95236 | 0.82618 | 3.13E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene95236 | 0.809755 | 1.62E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene95236 | 0.822588 | 2.19E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene95236 | 0.821006 | 5.08E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene95236 | 0.8212 | 4.58E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene95236 | 0.814622 | 1.40E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene95236 | 0.852065 | 5.89E-61 | -1.69E-46 |
| MS.gene050808 | MS.gene95236 | 0.811182 | 7.96E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene95236 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene95236 | 0.817318 | 3.51E-52 | -1.69E-46 |
| MS.gene050959 | MS.gene95236 | 0.823572 | 1.29E-53 | -1.69E-46 |
| MS.gene051180 | MS.gene95236 | 0.804898 | 1.73E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene95236 | 0.823255 | 1.53E-53 | -1.69E-46 |
| MS.gene051265 | MS.gene95236 | 0.824069 | 9.85E-54 | -1.69E-46 |
| MS.gene051388 | MS.gene95236 | 0.80696 | 6.38E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene95236 | 0.806305 | 8.78E-50 | -1.69E-46 |
| MS.gene051626 | MS.gene95236 | 0.81364 | 2.31E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene95236 | 0.837645 | 4.60E-57 | -1.69E-46 |
| MS.gene051720 | MS.gene95236 | 0.825638 | 4.20E-54 | -1.69E-46 |
| MS.gene051789 | MS.gene95236 | 0.810134 | 1.34E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene95236 | 0.80265 | 5.07E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene95236 | 0.829033 | 6.46E-55 | -1.69E-46 |
| MS.gene052323 | MS.gene95236 | 0.827947 | 1.18E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene95236 | 0.80674 | 7.10E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene95236 | 0.813989 | 1.94E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene95236 | 0.827236 | 1.75E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene95236 | 0.868992 | 4.32E-66 | -1.69E-46 |
| MS.gene052863 | MS.gene95236 | 0.808327 | 3.27E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene95236 | 0.843662 | 1.22E-58 | -1.69E-46 |
| MS.gene053054 | MS.gene95236 | -0.811157 | 8.06E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene95236 | 0.82745 | 1.55E-54 | -1.69E-46 |
| MS.gene053221 | MS.gene95236 | 0.846888 | 1.64E-59 | -1.69E-46 |
| MS.gene053226 | MS.gene95236 | 0.801122 | 1.04E-48 | -1.69E-46 |
| MS.gene053563 | MS.gene95236 | 0.802479 | 5.50E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene95236 | 0.81411 | 1.82E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene95236 | 0.801566 | 8.48E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene95236 | 0.808328 | 3.27E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene95236 | 0.810309 | 1.23E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene95236 | 0.819346 | 1.22E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene95236 | 0.832443 | 9.42E-56 | -1.69E-46 |
| MS.gene055358 | MS.gene95236 | 0.816962 | 4.22E-52 | -1.69E-46 |
| MS.gene055363 | MS.gene95236 | 0.808327 | 3.27E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene95236 | 0.805195 | 1.50E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene95236 | 0.82565 | 4.18E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene95236 | 0.81258 | 3.95E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene95236 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene95236 | 0.815721 | 8.00E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene95236 | 0.80019 | 1.62E-48 | -1.69E-46 |
| MS.gene056069 | MS.gene95236 | -0.801402 | 9.16E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene95236 | 0.820189 | 7.82E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene95236 | 0.804202 | 2.42E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene95236 | 0.801564 | 8.48E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene95236 | 0.812246 | 4.67E-51 | -1.69E-46 |
| MS.gene056643 | MS.gene95236 | 0.814776 | 1.30E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene95236 | 0.805574 | 1.25E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene95236 | 0.806818 | 6.84E-50 | -1.69E-46 |
| MS.gene057980 | MS.gene95236 | 0.803019 | 4.26E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene95236 | 0.842429 | 2.60E-58 | -1.69E-46 |
| MS.gene058625 | MS.gene95236 | 0.803364 | 3.61E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene95236 | 0.829426 | 5.18E-55 | -1.69E-46 |
| MS.gene058829 | MS.gene95236 | 0.81274 | 3.64E-51 | -1.69E-46 |
| MS.gene058851 | MS.gene95236 | 0.817389 | 3.38E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene95236 | 0.80693 | 6.48E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene95236 | 0.806597 | 7.61E-50 | -1.69E-46 |
| MS.gene059084 | MS.gene95236 | 0.8102 | 1.30E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene95236 | 0.802983 | 4.33E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene95236 | 0.808353 | 3.23E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene95236 | 0.819761 | 9.80E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene95236 | -0.819679 | 1.02E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene95236 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene95236 | 0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene95236 | 0.821145 | 4.72E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene95236 | 0.814247 | 1.70E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene95236 | 0.825971 | 3.50E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95236.t1 | MTR_8g096780 | 99.355 | 310 | 2 | 0 | 1 | 310 | 16 | 325 | 0.0 | 645 |
| MS.gene95236.t1 | MTR_3g099080 | 60.245 | 327 | 83 | 15 | 1 | 310 | 15 | 311 | 2.55e-113 | 333 |
| MS.gene95236.t1 | MTR_7g028740 | 49.741 | 193 | 91 | 5 | 29 | 219 | 25 | 213 | 4.00e-50 | 170 |
| MS.gene95236.t1 | MTR_8g066240 | 87.755 | 98 | 12 | 0 | 27 | 124 | 5 | 102 | 3.10e-44 | 147 |
| MS.gene95236.t1 | MTR_2g461920 | 59.231 | 130 | 48 | 2 | 30 | 159 | 122 | 246 | 6.34e-39 | 144 |
| MS.gene95236.t1 | MTR_4g109770 | 54.887 | 133 | 48 | 4 | 30 | 159 | 75 | 198 | 1.22e-37 | 139 |
| MS.gene95236.t1 | MTR_5g046670 | 47.712 | 153 | 75 | 3 | 30 | 181 | 194 | 342 | 1.82e-35 | 134 |
| MS.gene95236.t1 | MTR_1g035010 | 67.901 | 81 | 26 | 0 | 84 | 164 | 104 | 184 | 2.34e-33 | 130 |
| MS.gene95236.t1 | MTR_3g085180 | 56.311 | 103 | 42 | 2 | 83 | 182 | 164 | 266 | 3.62e-33 | 127 |
| MS.gene95236.t1 | MTR_7g110320 | 48.837 | 129 | 63 | 2 | 43 | 168 | 101 | 229 | 3.84e-33 | 129 |
| MS.gene95236.t1 | MTR_2g046550 | 52.252 | 111 | 52 | 1 | 51 | 161 | 107 | 216 | 4.63e-33 | 129 |
| MS.gene95236.t1 | MTR_7g444860 | 56.842 | 95 | 41 | 0 | 74 | 168 | 139 | 233 | 5.35e-33 | 124 |
| MS.gene95236.t1 | MTR_7g110320 | 48.837 | 129 | 63 | 2 | 43 | 168 | 101 | 229 | 6.29e-33 | 129 |
| MS.gene95236.t1 | MTR_1g086250 | 58.163 | 98 | 41 | 0 | 70 | 167 | 133 | 230 | 1.19e-32 | 128 |
| MS.gene95236.t1 | MTR_8g005960 | 54.867 | 113 | 47 | 1 | 51 | 159 | 150 | 262 | 3.03e-32 | 122 |
| MS.gene95236.t1 | MTR_1g053715 | 62.500 | 88 | 27 | 1 | 84 | 171 | 74 | 155 | 4.15e-32 | 122 |
| MS.gene95236.t1 | MTR_7g092930 | 59.091 | 88 | 36 | 0 | 79 | 166 | 63 | 150 | 1.23e-31 | 120 |
| MS.gene95236.t1 | MTR_8g463140 | 62.353 | 85 | 32 | 0 | 84 | 168 | 65 | 149 | 1.26e-30 | 114 |
| MS.gene95236.t1 | MTR_4g088555 | 67.568 | 74 | 24 | 0 | 84 | 157 | 63 | 136 | 1.09e-29 | 110 |
| MS.gene95236.t1 | MTR_2g078770 | 61.176 | 85 | 33 | 0 | 84 | 168 | 58 | 142 | 2.05e-29 | 110 |
| MS.gene95236.t1 | MTR_2g014200 | 61.905 | 84 | 32 | 0 | 78 | 161 | 58 | 141 | 1.74e-28 | 107 |
| MS.gene95236.t1 | MTR_8g080690 | 55.435 | 92 | 41 | 0 | 70 | 161 | 137 | 228 | 6.92e-28 | 111 |
| MS.gene95236.t1 | MTR_8g080680 | 33.028 | 218 | 111 | 4 | 84 | 294 | 132 | 321 | 3.54e-24 | 101 |
| MS.gene95236.t1 | MTR_8g080670 | 57.534 | 73 | 31 | 0 | 84 | 156 | 162 | 234 | 7.46e-22 | 95.1 |
| MS.gene95236.t1 | MTR_2g020620 | 52.308 | 65 | 31 | 0 | 93 | 157 | 99 | 163 | 1.18e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95236.t1 | AT5G50670 | 49.057 | 265 | 112 | 7 | 8 | 253 | 20 | 280 | 2.04e-70 | 223 |
| MS.gene95236.t1 | AT5G50670 | 49.057 | 265 | 112 | 7 | 8 | 253 | 20 | 280 | 2.04e-70 | 223 |
| MS.gene95236.t1 | AT5G50570 | 49.057 | 265 | 112 | 7 | 8 | 253 | 20 | 280 | 2.04e-70 | 223 |
| MS.gene95236.t1 | AT5G50570 | 49.057 | 265 | 112 | 7 | 8 | 253 | 20 | 280 | 2.04e-70 | 223 |
| MS.gene95236.t1 | AT1G76580 | 65.591 | 93 | 32 | 0 | 84 | 176 | 114 | 206 | 1.48e-36 | 139 |
| MS.gene95236.t1 | AT1G76580 | 65.591 | 93 | 32 | 0 | 84 | 176 | 114 | 206 | 1.55e-36 | 139 |
| MS.gene95236.t1 | AT1G76580 | 65.591 | 93 | 32 | 0 | 84 | 176 | 114 | 206 | 2.73e-36 | 138 |
| MS.gene95236.t1 | AT3G60030 | 58.182 | 110 | 42 | 1 | 79 | 184 | 122 | 231 | 1.32e-35 | 136 |
| MS.gene95236.t1 | AT2G47070 | 72.152 | 79 | 22 | 0 | 84 | 162 | 106 | 184 | 2.37e-35 | 135 |
| MS.gene95236.t1 | AT1G69170 | 64.444 | 90 | 32 | 0 | 69 | 158 | 109 | 198 | 7.90e-34 | 128 |
| MS.gene95236.t1 | AT1G20980 | 61.458 | 96 | 36 | 1 | 70 | 164 | 106 | 201 | 2.09e-33 | 130 |
| MS.gene95236.t1 | AT1G27370 | 58.889 | 90 | 37 | 0 | 70 | 159 | 162 | 251 | 2.10e-33 | 125 |
| MS.gene95236.t1 | AT1G27370 | 58.889 | 90 | 37 | 0 | 70 | 159 | 162 | 251 | 3.43e-33 | 126 |
| MS.gene95236.t1 | AT1G27370 | 58.889 | 90 | 37 | 0 | 70 | 159 | 162 | 251 | 3.43e-33 | 126 |
| MS.gene95236.t1 | AT1G27370 | 58.889 | 90 | 37 | 0 | 70 | 159 | 162 | 251 | 3.43e-33 | 126 |
| MS.gene95236.t1 | AT1G27370 | 58.889 | 90 | 37 | 0 | 70 | 159 | 162 | 251 | 3.43e-33 | 126 |
| MS.gene95236.t1 | AT1G27370 | 58.889 | 90 | 37 | 0 | 70 | 159 | 162 | 251 | 3.43e-33 | 126 |
| MS.gene95236.t1 | AT1G27370 | 58.889 | 90 | 37 | 0 | 70 | 159 | 162 | 251 | 3.43e-33 | 126 |
| MS.gene95236.t1 | AT1G53160 | 60.227 | 88 | 35 | 0 | 74 | 161 | 44 | 131 | 1.57e-31 | 116 |
| MS.gene95236.t1 | AT1G53160 | 60.227 | 88 | 35 | 0 | 74 | 161 | 44 | 131 | 1.87e-31 | 116 |
| MS.gene95236.t1 | AT1G53160 | 60.227 | 88 | 35 | 0 | 74 | 161 | 44 | 131 | 1.87e-31 | 116 |
| MS.gene95236.t1 | AT2G42200 | 61.905 | 84 | 32 | 0 | 81 | 164 | 71 | 154 | 3.66e-31 | 120 |
| MS.gene95236.t1 | AT3G57920 | 52.885 | 104 | 49 | 0 | 57 | 160 | 32 | 135 | 5.87e-31 | 119 |
| MS.gene95236.t1 | AT1G27360 | 67.105 | 76 | 25 | 0 | 84 | 159 | 175 | 250 | 5.98e-31 | 120 |
| MS.gene95236.t1 | AT1G27360 | 67.105 | 76 | 25 | 0 | 84 | 159 | 175 | 250 | 5.98e-31 | 120 |
| MS.gene95236.t1 | AT1G27360 | 67.105 | 76 | 25 | 0 | 84 | 159 | 175 | 250 | 5.98e-31 | 120 |
| MS.gene95236.t1 | AT1G27360 | 67.105 | 76 | 25 | 0 | 84 | 159 | 175 | 250 | 5.98e-31 | 120 |
| MS.gene95236.t1 | AT1G02065 | 63.095 | 84 | 31 | 0 | 74 | 157 | 178 | 261 | 1.58e-30 | 117 |
| MS.gene95236.t1 | AT2G33810 | 66.216 | 74 | 25 | 0 | 84 | 157 | 54 | 127 | 4.05e-30 | 111 |
| MS.gene95236.t1 | AT5G43270 | 59.302 | 86 | 35 | 0 | 75 | 160 | 160 | 245 | 4.90e-30 | 118 |
| MS.gene95236.t1 | AT5G43270 | 59.302 | 86 | 35 | 0 | 75 | 160 | 160 | 245 | 4.90e-30 | 118 |
| MS.gene95236.t1 | AT5G43270 | 59.302 | 86 | 35 | 0 | 75 | 160 | 160 | 245 | 4.90e-30 | 118 |
| MS.gene95236.t1 | AT3G15270 | 62.162 | 74 | 28 | 0 | 84 | 157 | 63 | 136 | 1.51e-28 | 108 |
| MS.gene95236.t1 | AT5G18830 | 44.944 | 89 | 48 | 1 | 71 | 158 | 125 | 213 | 7.08e-22 | 96.7 |
| MS.gene95236.t1 | AT5G18830 | 44.944 | 89 | 48 | 1 | 71 | 158 | 125 | 213 | 7.23e-22 | 96.7 |
| MS.gene95236.t1 | AT5G18830 | 44.944 | 89 | 48 | 1 | 71 | 158 | 125 | 213 | 8.33e-22 | 96.3 |
| MS.gene95236.t1 | AT2G47070 | 72.727 | 55 | 15 | 0 | 108 | 162 | 1 | 55 | 1.59e-21 | 95.5 |
| MS.gene95236.t1 | AT1G02065 | 41.837 | 98 | 49 | 3 | 42 | 131 | 138 | 235 | 8.98e-16 | 75.9 |
Find 0 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACCATTTATAACTTA+AGG | + | 57544:128938-128957 | MS.gene95236:intron | 15.0% |
| !! | AATAACCATTTATAACTTAA+GGG | + | 57544:128939-128958 | MS.gene95236:intron | 15.0% |
| !! | TAGATAAATATTTAGATCAA+AGG | - | 57544:127585-127604 | None:intergenic | 15.0% |
| !!! | ATCTAACATTTGAAATTTAA+GGG | - | 57544:128746-128765 | None:intergenic | 15.0% |
| !!! | CAACAATATATTTTTTTATC+AGG | + | 57544:129205-129224 | MS.gene95236:intron | 15.0% |
| !!! | TATCTAACATTTGAAATTTA+AGG | - | 57544:128747-128766 | None:intergenic | 15.0% |
| !! | AACATAAATAAGAGAATAAC+CGG | - | 57544:128653-128672 | None:intergenic | 20.0% |
| !! | ACATAATTTAGAAGTTTACT+AGG | - | 57544:127235-127254 | None:intergenic | 20.0% |
| !! | ATAACCATTTATAACTTAAG+GGG | + | 57544:128940-128959 | MS.gene95236:intron | 20.0% |
| !! | ATGATTAAAAAAGAAACTTG+AGG | + | 57544:129044-129063 | MS.gene95236:intron | 20.0% |
| !! | ATTATTCATGATTGAAATTC+CGG | + | 57544:128631-128650 | MS.gene95236:intron | 20.0% |
| !! | CTCATATAAAGTAGTATATA+TGG | - | 57544:128553-128572 | None:intergenic | 20.0% |
| !! | CTTTATCAGTATTAATGATT+TGG | + | 57544:129115-129134 | MS.gene95236:intron | 20.0% |
| !! | GAGATCAAATAAAATGAAAA+AGG | + | 57544:129009-129028 | MS.gene95236:intron | 20.0% |
| !! | TACAAATACAATACAATACA+AGG | - | 57544:128301-128320 | None:intergenic | 20.0% |
| !! | TCCTTCTTGTTAAAATATAA+TGG | - | 57544:128876-128895 | None:intergenic | 20.0% |
| !! | TGATTAAAAAAGAAACTTGA+GGG | + | 57544:129045-129064 | MS.gene95236:intron | 20.0% |
| !! | TTAATAAATTAAACCAAACC+AGG | + | 57544:128457-128476 | MS.gene95236:intron | 20.0% |
| !!! | AATTAACAAGTGTTTTAGTA+AGG | - | 57544:127440-127459 | None:intergenic | 20.0% |
| !!! | AGAAATATCACTTCTTTTTT+TGG | - | 57544:128409-128428 | None:intergenic | 20.0% |
| !!! | AGTTTCTTTTTTAATCATGT+TGG | - | 57544:129042-129061 | None:intergenic | 20.0% |
| !!! | ATTAACAAGTGTTTTAGTAA+GGG | - | 57544:127439-127458 | None:intergenic | 20.0% |
| !!! | ATTTTATCTGATTTTGCATA+TGG | + | 57544:127551-127570 | MS.gene95236:intron | 20.0% |
| !!! | ATTTTGTATCTTTCTGAAAA+AGG | - | 57544:129520-129539 | None:intergenic | 20.0% |
| !!! | GAAATATCACTTCTTTTTTT+GGG | - | 57544:128408-128427 | None:intergenic | 20.0% |
| !!! | GTTTCTTTTTTAATCATGTT+GGG | - | 57544:129041-129060 | None:intergenic | 20.0% |
| ! | ATCTACTAGTAAGATTTAGA+TGG | - | 57544:127639-127658 | None:intergenic | 25.0% |
| ! | ATGAAGTTAGCATGAATAAT+GGG | - | 57544:127267-127286 | None:intergenic | 25.0% |
| ! | CAAAAATTACATAATGCACT+TGG | + | 57544:127990-128009 | MS.gene95236:intron | 25.0% |
| ! | CAAACGAAAAATAGACAAAA+GGG | - | 57544:128829-128848 | None:intergenic | 25.0% |
| ! | CTATAACTTTAAACTAACCT+TGG | - | 57544:127861-127880 | None:intergenic | 25.0% |
| ! | CTTAAACAACATAGAAACAA+TGG | + | 57544:126727-126746 | MS.gene95236:CDS | 25.0% |
| ! | GTTAAAATATAATGGCACAT+AGG | - | 57544:128868-128887 | None:intergenic | 25.0% |
| ! | TAACCATTTATAACTTAAGG+GGG | + | 57544:128941-128960 | MS.gene95236:intron | 25.0% |
| ! | TATGAAGTTAGCATGAATAA+TGG | - | 57544:127268-127287 | None:intergenic | 25.0% |
| ! | TCAAACGAAAAATAGACAAA+AGG | - | 57544:128830-128849 | None:intergenic | 25.0% |
| ! | TCAATAATTCTTGCATCATT+CGG | + | 57544:128246-128265 | MS.gene95236:intron | 25.0% |
| ! | TCCAAATCTAGACAATTATT+GGG | - | 57544:127909-127928 | None:intergenic | 25.0% |
| ! | TCTACTAGTAAGATTTAGAT+GGG | - | 57544:127638-127657 | None:intergenic | 25.0% |
| !! | TTTAAACTAACCTTGGTAAT+TGG | - | 57544:127854-127873 | None:intergenic | 25.0% |
| !! | TTTTAACAAGAAGGAAAAGA+AGG | + | 57544:128881-128900 | MS.gene95236:intron | 25.0% |
| !!! | AGTAGATTCTGAAATTAAAG+TGG | + | 57544:127652-127671 | MS.gene95236:intron | 25.0% |
| !!! | CATGTTTGTTGTTTTAGTAA+TGG | - | 57544:128110-128129 | None:intergenic | 25.0% |
| !!! | CATTGTTTCTATGTTGTTTA+AGG | - | 57544:126729-126748 | None:intergenic | 25.0% |
| !!! | GCCATTATATTTTAACAAGA+AGG | + | 57544:128872-128891 | MS.gene95236:intron | 25.0% |
| !!! | GTTTTGTTTTCGTTATGAAA+AGG | + | 57544:129139-129158 | MS.gene95236:intron | 25.0% |
| !!! | TTGAGATTCCTTTTTTGTTA+AGG | - | 57544:127366-127385 | None:intergenic | 25.0% |
| AAACAATGGATGGTTCAATT+AGG | + | 57544:126741-126760 | MS.gene95236:CDS | 30.0% | |
| AACAACATAGAAACAATGGA+TGG | + | 57544:126731-126750 | MS.gene95236:CDS | 30.0% | |
| AAGATGTTGTTCCAAGAAAA+AGG | - | 57544:129369-129388 | None:intergenic | 30.0% | |
| AATGAAGTTCACATACCTTA+TGG | - | 57544:127021-127040 | None:intergenic | 30.0% | |
| ACCCAATAATTGTCTAGATT+TGG | + | 57544:127905-127924 | MS.gene95236:intron | 30.0% | |
| AGCACAATCCTTAACAAAAA+AGG | + | 57544:127355-127374 | MS.gene95236:intron | 30.0% | |
| ATAGTGCAGTAGTTATCTAT+AGG | + | 57544:128680-128699 | MS.gene95236:intron | 30.0% | |
| CTACTAGTAAGATTTAGATG+GGG | - | 57544:127637-127656 | None:intergenic | 30.0% | |
| CTCCAAATCTAGACAATTAT+TGG | - | 57544:127910-127929 | None:intergenic | 30.0% | |
| GTAAGTTTCCTTAATTGTGT+AGG | + | 57544:127707-127726 | MS.gene95236:intron | 30.0% | |
| TAAGATGTTTGTACCTATGT+GGG | - | 57544:127952-127971 | None:intergenic | 30.0% | |
| TAGCTAACATATTATCTGAG+TGG | + | 57544:127882-127901 | MS.gene95236:intron | 30.0% | |
| TATACATGTGAACTTGAGAA+TGG | - | 57544:129244-129263 | None:intergenic | 30.0% | |
| TCATAAACATGGCAAATAAG+TGG | - | 57544:128076-128095 | None:intergenic | 30.0% | |
| TCTACTGTATTACTACATGA+AGG | - | 57544:129166-129185 | None:intergenic | 30.0% | |
| TGGTGAAAATGATATTCTCT+AGG | + | 57544:127672-127691 | MS.gene95236:intron | 30.0% | |
| TTAAGATGTTTGTACCTATG+TGG | - | 57544:127953-127972 | None:intergenic | 30.0% | |
| TTGGTTATAAATTCTCAACG+AGG | + | 57544:127520-127539 | MS.gene95236:intron | 30.0% | |
| TTTGACTGTGTGTAGTTAAT+TGG | + | 57544:128336-128355 | MS.gene95236:intron | 30.0% | |
| TTTGGAGATTACAGAACAAA+AGG | + | 57544:126767-126786 | MS.gene95236:CDS | 30.0% | |
| ! | AATTTAGCCTTCATTAGAAG+AGG | + | 57544:127328-127347 | MS.gene95236:intron | 30.0% |
| ! | ATCTGATTCAATCCATTTTC+AGG | - | 57544:129613-129632 | None:intergenic | 30.0% |
| ! | GATAAACAAGACCTTTTTCT+TGG | + | 57544:129355-129374 | MS.gene95236:CDS | 30.0% |
| ! | GTATCTTTCTGAAAAAGGAT+TGG | - | 57544:129515-129534 | None:intergenic | 30.0% |
| !! | AGATGATGAAGATGTCATTT+TGG | - | 57544:126882-126901 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTGATTTGAAGCT+TGG | + | 57544:126794-126813 | MS.gene95236:CDS | 30.0% |
| AACTTGAGAATGGTAGCAAT+TGG | - | 57544:129234-129253 | None:intergenic | 35.0% | |
| AAGATGTTTGTACCTATGTG+GGG | - | 57544:127951-127970 | None:intergenic | 35.0% | |
| AAGCTACTACTTCGAGTAAT+AGG | - | 57544:127826-127845 | None:intergenic | 35.0% | |
| AATGGCACATAGGAAACATT+TGG | - | 57544:128858-128877 | None:intergenic | 35.0% | |
| AATTACATAATGCACTTGGC+TGG | + | 57544:127994-128013 | MS.gene95236:intron | 35.0% | |
| ACACATGATCATCCTGAAAA+TGG | + | 57544:129598-129617 | MS.gene95236:CDS | 35.0% | |
| ACTTGAGAATGGTAGCAATT+GGG | - | 57544:129233-129252 | None:intergenic | 35.0% | |
| AGGAATTTGATGAAGGAAAG+AGG | + | 57544:127743-127762 | MS.gene95236:CDS | 35.0% | |
| ATAGTTTCATGTCTTGTGGA+TGG | + | 57544:126953-126972 | MS.gene95236:CDS | 35.0% | |
| ATGACAAAGCATAACACACA+AGG | - | 57544:127141-127160 | None:intergenic | 35.0% | |
| CAAATAAGTGGACCAAATCA+AGG | - | 57544:128064-128083 | None:intergenic | 35.0% | |
| CATACACACATGTTGTAACT+TGG | + | 57544:127501-127520 | MS.gene95236:intron | 35.0% | |
| CCACTAGATTGTCATAAACA+TGG | - | 57544:128087-128106 | None:intergenic | 35.0% | |
| CCATGTTTATGACAATCTAG+TGG | + | 57544:128084-128103 | MS.gene95236:intron | 35.0% | |
| CTTACAAAGTCCAAAGATGT+TGG | + | 57544:126848-126867 | MS.gene95236:CDS | 35.0% | |
| CTTCATCATCTTCAACTTCA+GGG | + | 57544:126891-126910 | MS.gene95236:CDS | 35.0% | |
| GTAACTGTAGAGACTATCAT+AGG | + | 57544:126993-127012 | MS.gene95236:CDS | 35.0% | |
| TCAGATAGTTTCATGTCTTG+TGG | + | 57544:126949-126968 | MS.gene95236:CDS | 35.0% | |
| TCTTCATCATCTTCAACTTC+AGG | + | 57544:126890-126909 | MS.gene95236:CDS | 35.0% | |
| TGACAAAGCATAACACACAA+GGG | - | 57544:127140-127159 | None:intergenic | 35.0% | |
| TTGCCCCCTTAAGTTATAAA+TGG | - | 57544:128947-128966 | None:intergenic | 35.0% | |
| ! | AGCTTTTTGTCCAATTACCA+AGG | + | 57544:127841-127860 | MS.gene95236:CDS | 35.0% |
| ! | GAAATTCTAGCACTGAATCA+GGG | + | 57544:126825-126844 | MS.gene95236:CDS | 35.0% |
| ! | GTTATCTATAGGTTTTGCTC+TGG | + | 57544:128691-128710 | MS.gene95236:intron | 35.0% |
| !! | ACTTTTCAGCTTTTGAGTGA+GGG | + | 57544:128163-128182 | MS.gene95236:intron | 35.0% |
| AAAAGAACCTGCTACATTGC+TGG | - | 57544:127090-127109 | None:intergenic | 40.0% | |
| ACAAAGTCCAAAGATGTTGG+TGG | + | 57544:126851-126870 | MS.gene95236:CDS | 40.0% | |
| AGAGCTAGAGCTATCAACAA+TGG | + | 57544:126923-126942 | MS.gene95236:CDS | 40.0% | |
| CAATGGATGGTTCAATTAGG+AGG | + | 57544:126744-126763 | MS.gene95236:CDS | 40.0% | |
| CAGTGCTAGAATTTCCAACA+TGG | - | 57544:126820-126839 | None:intergenic | 40.0% | |
| CTACTTCGAGTAATAGGTTC+TGG | - | 57544:127820-127839 | None:intergenic | 40.0% | |
| GACAAAGCATAACACACAAG+GGG | - | 57544:127139-127158 | None:intergenic | 40.0% | |
| GAGCTAGAGCTATCAACAAT+GGG | + | 57544:126924-126943 | MS.gene95236:CDS | 40.0% | |
| GATGGTTCAATTAGGAGGTT+TGG | + | 57544:126749-126768 | MS.gene95236:CDS | 40.0% | |
| GCATGGAACCTACACAATTA+AGG | - | 57544:127718-127737 | None:intergenic | 40.0% | |
| GCTTCTACCTCTTCTAATGA+AGG | - | 57544:127338-127357 | None:intergenic | 40.0% | |
| GGGGAAACACAAAAAGCTTA+TGG | - | 57544:127120-127139 | None:intergenic | 40.0% | |
| GGTAAATCCACCAACATCTT+TGG | - | 57544:126861-126880 | None:intergenic | 40.0% | |
| GGTTCATCATAGCAGTAGAA+GGG | - | 57544:129267-129286 | None:intergenic | 40.0% | |
| TAAGTGGACCAAATCAAGGA+TGG | - | 57544:128060-128079 | None:intergenic | 40.0% | |
| TCAGGATGATCATGTGTTTG+TGG | - | 57544:129595-129614 | None:intergenic | 40.0% | |
| TGATCATGTGTTTGTGGTAC+TGG | - | 57544:129589-129608 | None:intergenic | 40.0% | |
| TGCTATGATGAACCCTACTT+GGG | + | 57544:129273-129292 | MS.gene95236:CDS | 40.0% | |
| ! | CAATTGGTGGACATAAGCAA+AGG | + | 57544:127059-127078 | MS.gene95236:CDS | 40.0% |
| ! | GGAAATTCTAGCACTGAATC+AGG | + | 57544:126824-126843 | MS.gene95236:CDS | 40.0% |
| !! | CATCAAATTCCTCTAGAGCA+TGG | - | 57544:127735-127754 | None:intergenic | 40.0% |
| !! | GACTTTTCAGCTTTTGAGTG+AGG | + | 57544:128162-128181 | MS.gene95236:intron | 40.0% |
| !! | GCATTTGTTGGTGTTGATTG+TGG | - | 57544:129324-129343 | None:intergenic | 40.0% |
| !! | GCTCTAGAGGAATTTGATGA+AGG | + | 57544:127736-127755 | MS.gene95236:CDS | 40.0% |
| !! | GGTCTTGTTTATCAACCAGA+TGG | - | 57544:129348-129367 | None:intergenic | 40.0% |
| AAGACTGCACAGGTCACAAT+TGG | + | 57544:127043-127062 | MS.gene95236:CDS | 45.0% | |
| AATTGTGACCTGTGCAGTCT+TGG | - | 57544:127044-127063 | None:intergenic | 45.0% | |
| ACACCAACAAATGCACCATC+TGG | + | 57544:129330-129349 | MS.gene95236:CDS | 45.0% | |
| ACTAGATACGACACCTGGTT+TGG | - | 57544:128473-128492 | None:intergenic | 45.0% | |
| ACTTCATTCCAAGACTGCAC+AGG | + | 57544:127033-127052 | MS.gene95236:CDS | 45.0% | |
| AGACTATCATAGGCGCCATA+AGG | + | 57544:127003-127022 | MS.gene95236:CDS | 45.0% | |
| AGCTGTAGGAAACGCTTAGA+TGG | + | 57544:127766-127785 | MS.gene95236:CDS | 45.0% | |
| ATGAAGGAAAGAGGAGCTGT+AGG | + | 57544:127752-127771 | MS.gene95236:CDS | 45.0% | |
| ATGATGAACCCTACTTGGGT+TGG | + | 57544:129277-129296 | MS.gene95236:CDS | 45.0% | |
| CAACCAGATGGTGCATTTGT+TGG | - | 57544:129336-129355 | None:intergenic | 45.0% | |
| CAACCAGCAGCTACAAAGAA+GGG | + | 57544:129389-129408 | MS.gene95236:CDS | 45.0% | |
| CTGCTATGATGAACCCTACT+TGG | + | 57544:129272-129291 | MS.gene95236:CDS | 45.0% | |
| GGGTTCATCATAGCAGTAGA+AGG | - | 57544:129268-129287 | None:intergenic | 45.0% | |
| TAGACACTAGATACGACACC+TGG | - | 57544:128478-128497 | None:intergenic | 45.0% | |
| TCAACCAGCAGCTACAAAGA+AGG | + | 57544:129388-129407 | MS.gene95236:CDS | 45.0% | |
| TGGACCAAATCAAGGATGGT+GGG | - | 57544:128056-128075 | None:intergenic | 45.0% | |
| TTTCCCTTCTTTGTAGCTGC+TGG | - | 57544:129395-129414 | None:intergenic | 45.0% | |
| ! | AAGAGGTTGGTTGTTCACAG+TGG | - | 57544:129458-129477 | None:intergenic | 45.0% |
| ! | CGAGTAATAGGTTCTGGTTG+TGG | - | 57544:127814-127833 | None:intergenic | 45.0% |
| ! | GATTTGAAGCTTGGCCATGT+TGG | + | 57544:126803-126822 | MS.gene95236:CDS | 45.0% |
| ! | GTTGTGGTTTTCTTCTCCGT+CGG | - | 57544:127798-127817 | None:intergenic | 45.0% |
| ! | TTTGGAGCAGACAATTGCTG+AGG | + | 57544:127923-127942 | MS.gene95236:intron | 45.0% |
| !! | GTTGGTGTTGATTGTGGCTA+TGG | - | 57544:129318-129337 | None:intergenic | 45.0% |
| ACATAATGCACTTGGCTGGC+TGG | + | 57544:127998-128017 | MS.gene95236:intron | 50.0% | |
| ACATCTCCTCCAACCCAAGT+AGG | - | 57544:129289-129308 | None:intergenic | 50.0% | |
| ACTGCACAGGTCACAATTGG+TGG | + | 57544:127046-127065 | MS.gene95236:CDS | 50.0% | |
| ATTGCTGAGGATCCCCACAT+AGG | + | 57544:127936-127955 | MS.gene95236:intron | 50.0% | |
| CATCTCCTCCAACCCAAGTA+GGG | - | 57544:129288-129307 | None:intergenic | 50.0% | |
| CTCATGGATGAAGCTGGAAG+AGG | - | 57544:129475-129494 | None:intergenic | 50.0% | |
| GCTTAGATGGTCACAACCGA+CGG | + | 57544:127779-127798 | MS.gene95236:CDS | 50.0% | |
| GTGGACCAAATCAAGGATGG+TGG | - | 57544:128057-128076 | None:intergenic | 50.0% | |
| GTGTAGGTTCCATGCTCTAG+AGG | + | 57544:127723-127742 | MS.gene95236:intron | 50.0% | |
| TGGATGAAGCTGGAAGAGGT+TGG | - | 57544:129471-129490 | None:intergenic | 50.0% | |
| !! | ATGAACCCTACTTGGGTTGG+AGG | + | 57544:129280-129299 | MS.gene95236:CDS | 50.0% |
| !! | CTTGGGTTGGAGGAGATGTT+AGG | + | 57544:129290-129309 | MS.gene95236:CDS | 50.0% |
| CCATGAGTCGCACGTTTAGC+AGG | + | 57544:129488-129507 | MS.gene95236:CDS | 55.0% | |
| CCTGCTAAACGTGCGACTCA+TGG | - | 57544:129491-129510 | None:intergenic | 55.0% | |
| GCTGCCCACCATCCTTGATT+TGG | + | 57544:128049-128068 | MS.gene95236:intron | 55.0% | |
| GGTTCTGCCAGCAATGTAGC+AGG | + | 57544:127080-127099 | MS.gene95236:CDS | 55.0% | |
| GTGCGACTCATGGATGAAGC+TGG | - | 57544:129481-129500 | None:intergenic | 55.0% | |
| TTCACAGTGGCTGCTGCTGT+TGG | - | 57544:129445-129464 | None:intergenic | 55.0% | |
| !! | ATCAAGGATGGTGGGCAGCA+TGG | - | 57544:128048-128067 | None:intergenic | 55.0% |
| ! | AATGCACTTGGCTGGCTGGC+TGG | + | 57544:128002-128021 | MS.gene95236:intron | 60.0% |
| CAGTGGCTGCTGCTGTTGGC+TGG | - | 57544:129441-129460 | None:intergenic | 65.0% | |
| GGTGGGCAGCATGGTGAGTG+AGG | - | 57544:128039-128058 | None:intergenic | 65.0% | |
| ! | CACTTGGCTGGCTGGCTGGC+TGG | + | 57544:128006-128025 | MS.gene95236:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57544 | gene | 126713 | 129633 | 126713 | ID=MS.gene95236 |
| 57544 | mRNA | 126713 | 129633 | 126713 | ID=MS.gene95236.t1;Parent=MS.gene95236 |
| 57544 | exon | 126713 | 127101 | 126713 | ID=MS.gene95236.t1.exon1;Parent=MS.gene95236.t1 |
| 57544 | CDS | 126713 | 127101 | 126713 | ID=cds.MS.gene95236.t1;Parent=MS.gene95236.t1 |
| 57544 | exon | 127729 | 127862 | 127729 | ID=MS.gene95236.t1.exon2;Parent=MS.gene95236.t1 |
| 57544 | CDS | 127729 | 127862 | 127729 | ID=cds.MS.gene95236.t1;Parent=MS.gene95236.t1 |
| 57544 | exon | 129227 | 129633 | 129227 | ID=MS.gene95236.t1.exon3;Parent=MS.gene95236.t1 |
| 57544 | CDS | 129227 | 129633 | 129227 | ID=cds.MS.gene95236.t1;Parent=MS.gene95236.t1 |
| Gene Sequence |
| Protein sequence |
