AlfalfaGEDB | MS.gene97439

M. sativa cultivar XinJiangDaYe / MS.gene97439

KEGG: K03123
GO: GO:0005575 GO:0005667 GO:0005672 GO:0006139 GO:0006352 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0032991 GO:0034641 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044798 GO:0046483 GO:0071704 GO:0090304 GO:0090575 GO:1901360 GO:1901362 GO:1901576
PFAM: PF02268.19 PF02751.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97439.t1	XP_003620976.1	98.1	106	2	0	1	106	1	106	5.80E-51	210.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97439.t1	Q39236	91.3	104	9	0	1	104	1	104	2.7e-49	196.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97439.t1	B7FH46	98.1	106	2	0	1	106	1	106	4.2e-51	210.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene97439	0.814755	1.31E-51	-1.69E-46
MS.gene049272	MS.gene97439	0.801775	7.68E-49	-1.69E-46
MS.gene049404	MS.gene97439	0.812267	4.62E-51	-1.69E-46
MS.gene049669	MS.gene97439	0.820992	5.11E-53	-1.69E-46
MS.gene049824	MS.gene97439	0.812609	3.89E-51	-1.69E-46
MS.gene049825	MS.gene97439	0.853829	1.84E-61	-1.69E-46
MS.gene049873	MS.gene97439	0.863663	2.12E-64	-1.69E-46
MS.gene050303	MS.gene97439	0.814201	1.74E-51	-1.69E-46
MS.gene050355	MS.gene97439	0.834857	2.35E-56	-1.69E-46
MS.gene050442	MS.gene97439	0.810124	1.35E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene052074	MS.gene97439	PPI
MS.gene31113	MS.gene97439	PPI
MS.gene76728	MS.gene97439	PPI
MS.gene77045	MS.gene97439	PPI
MS.gene87064	MS.gene97439	PPI
MS.gene87743	MS.gene97439	PPI
MS.gene97439	MS.gene82237	PPI
MS.gene97439	MS.gene48819	PPI
MS.gene97439	MS.gene78402	PPI
MS.gene97439	MS.gene42075	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97439.t1	MTR_7g005540	98.113	106	2	1	106	1	106	3.48e-75	219
MS.gene97439.t1	MTR_5g066740	87.500	104	13	1	104	7	110	4.16e-66	196
MS.gene97439.t1	MTR_7g005540	100.000	60	0	1	60	1	60	2.72e-37	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97439.t1	AT4G24440	91.346	104	9	0	1	104	1	104	1.51e-69	205
MS.gene97439.t1	AT4G24440	91.346	104	9	0	1	104	1	104	1.51e-69	205

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Find 23 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGTGCCTCACTGAGACTT+TGG	0.433161	7.4:-94621711	MS.gene97439:CDS
ACAACCAAGAGAATGTTGGA+CGG	0.645466	7.4:-94618791	MS.gene97439:CDS
AGAACCTGAATCGCAATCTC+AGG	0.497392	7.4:+94621659	None:intergenic
AGACAATTATCTGGCGTGAA+AGG	0.536018	7.4:+94618211	None:intergenic
AGATGATAGCCTTGCACACA+AGG	0.527665	7.4:-94618254	MS.gene97439:CDS
ATTGAAAGAGAAGATACAAA+AGG	0.468041	7.4:-94618287	MS.gene97439:CDS
ATTGTGATTAGACAATTATC+TGG	0.433788	7.4:+94618202	None:intergenic
CAAAGCATCTTGTAAGATGA+AGG	0.489651	7.4:+94618827	None:intergenic
CAACCAAGAGAATGTTGGAC+GGG	0.592439	7.4:-94618790	MS.gene97439:CDS
CACTGAGACTTTGGACGAGA+TGG	0.495885	7.4:-94621702	MS.gene97439:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAGATGAAGTTTACCTA+GGG	-	chr7.4:94618735-94618754	MS.gene97439:intron	30.0%
ACACAGAACTAAAATTACAC+AGG	-	chr7.4:94619679-94619698	MS.gene97439:intron	30.0%
ACTATACCACTATAATGTAG+CGG	+	chr7.4:94620694-94620713	None:intergenic	30.0%
ATACAACTGTTAACACACAA+AGG	+	chr7.4:94619380-94619399	None:intergenic	30.0%
ATTTAGAAATTCCTTATGGC+GGG	-	chr7.4:94619990-94620009	MS.gene97439:intron	30.0%
ATTTGTTTACATAGAGCTCA+TGG	+	chr7.4:94621506-94621525	None:intergenic	30.0%
CATTGAGCAACAAATATACA+AGG	+	chr7.4:94618616-94618635	None:intergenic	30.0%
CATTTAGAAATTCCTTATGG+CGG	-	chr7.4:94619989-94620008	MS.gene97439:intron	30.0%
GAAACTAAGTAGACTATTGT+TGG	-	chr7.4:94620434-94620453	MS.gene97439:intron	30.0%
GAAAGTTTGTGAATGAGTTT+CGG	+	chr7.4:94619218-94619237	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	94618198	94621771	94618198	ID=MS.gene97439
chr7.4	mRNA	94618198	94621771	94618198	ID=MS.gene97439.t1;Parent=MS.gene97439
chr7.4	exon	94621643	94621771	94621643	ID=MS.gene97439.t1.exon1;Parent=MS.gene97439.t1
chr7.4	CDS	94621643	94621771	94621643	ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1
chr7.4	exon	94621492	94621542	94621492	ID=MS.gene97439.t1.exon2;Parent=MS.gene97439.t1
chr7.4	CDS	94621492	94621542	94621492	ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1
chr7.4	exon	94618757	94618889	94618757	ID=MS.gene97439.t1.exon3;Parent=MS.gene97439.t1
chr7.4	CDS	94618757	94618889	94618757	ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1
chr7.4	exon	94618198	94618313	94618198	ID=MS.gene97439.t1.exon4;Parent=MS.gene97439.t1
chr7.4	CDS	94618198	94618313	94618198	ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1

Gene Sequence

>MS.gene97439

ATGGCGACATTCGAACTTTATCGTAGGTCGACAATCGGAATGTGCCTCACTGAGACTTTGGACGAGATGGTTCAGAATGGAACTCTTAGTCCTGAGATTGCGATTCAGGTTCTCGTTCAGTTTGATAAGGTAGGTTTCGGAATTGGTGCTAGGAGACTACATGTTTCGTTTCTGGATCTGGTTTAATGTTCACTTTACTTATTATTTTAATTGCATGTGGATTTTGTAGTCTATGACTGAAGCTCTGGAAACACAAGTTAAAAGCAAGGTCTCTATCAAGGTAACGCTGCTTATCTTTTGTTAGATAGTGTAAGGTGTTGATTTTTTGGTGAGGTGAAGCATGGTTATTGTTAAGATTGTCTAGTAGGGATGGACGTGACTTGCGCTGAGCTCTAGCTATTGCAGTCTTACTGAGCCTTGTATATTTGTTGCTCAATGATTACTGAGCCTTGTATATTTTTGGCTCAATCAGAGAGACGAAGGGTTTGGCTGGTAAGTGAGAGCACCCTCAGGTCACACTGCCAGCCAATTCAAACTAATGAGATGAAGTTTACCTAGGGTCGCATTTCAGTTTAAGTATGGTCAATCATTGTTTAGTTTGTTACAGAGATACGCACACTGTGTGTGGACACTTGTTTGAGGCTTGACAGACGTAACTTGTTACGAGTGGTAAACATCATATATTATACTTTAAAATAATGCAATAAGATCAAGTTTCAATTAGTTTTCACTTTTCAATTTGTATGAAACTACGTAGATGTGATCTATGTATCAGTTTTTCAATCCAATGGCTGTGTCACTTTTGCTTTTTACCTTTCAATTCAATGGGTGGTTGTGCCGATTTATTCCAAACTATGAGAGAGGAGATGTATAGTTACACATCACTTGACAAGTTATTCCATATCCTCGACTTTGATTTTACTTGGATCCAATGTCTTAAACCAAATTTTAATTACACATCAAATAACAATTTTCCGGGTTCTCTTCCTCATTTTTTCATGTTCTTCCATCCATCCTCCGAAACTCATTCACAAACTTTCTGATCACGCTCATTGTTCCGGTTTAAGAATCTCTTGAAAAGGTGTGGCATTGGCTGCTATTAATCTCCCTTTATACTGAAACATGTCATCCTATTTCAGCCTTTAGAGATTCGTAAAGTTGGTTTCCCTCTACAATATACCTTTGTGTGTTAACAGTTGTATCTGGTGCTAATATCACCATGCTGATAAATAAAGAACACAATTCAAGTCCACAAATCAGGATCAAATAGGGATGTTTATGTCTATATATGCTCATATAGTTACAATTGATACTGAATTCAGATAACTTTTTATGTGTTGAAAAACCAAATTTGATGGTGAATTATAGAATTGTCTGATAAAAACTGGTACCAAATAGGATTTGTAACTGAATAACAATCAATTTATTGAATAAATTCTTTGGGGACAAGTTCCCAAGTCAGAGACAGTTCACAATCAAACACACAGAACTAAAATTACACAGGATTAGTGAAACACAGTCACGGTTTCCACAAGGGTTCTAGAGCTTTGTGTCTCCTATTCCAGTTAACCACGCAATAATTCTACAATAACTAACAAAGTCTGACTTTGCCATATTTATTCCTAGTACAAACAGAAAATATGCACACTCTAAAATAATTGCTCACAATAACTGCCATAATAGATACTAACTGCACAAAAATTGACACAGAAACTGCCAAAGTCAGTTTCAGTTTTTCTTCCTTGCATAGTATTTCTTCATGAGAGGTCTAACAGTGTCTTATATTTCTTACATTTAGAAATTCCTTATGGCGGGATACCCTCTCAAGTTAGGCATCTTTAAATATTCTCTATTTGCATTATCTTCTATTTGGAGAAGAAACGCTTCATTCAAGGTTTAATTTTTGGTTGAATCATGCATGCTGACATTTATTACTTAATAACAAGACACTTGTCTTTGTATTTGCAAAACTATCACTACAACACGAGATTTAAAGAGATTGAGTTGGTATGATTATCACCCACAATTACCTTTTTACTTAATTTTTTGGCTCTAAACATGAGGTTCATTTGCCGGGTATGCAGTTTGGTCATATGTCCATTTTTTTTGTCATGACTTCCATACTTTTTACTCATGATTATGACTACCATTGACATATATGACTGTTATTGTTTGCTGCAGCCTTTTGCACTATACGATCTCATGTTTTTTCCATCTCTTTTTGAGGGAGTGGGCTGAAACTAAGTAGACTATTGTTGGATAGCAAGGCTGTACACTATTGTATGTCTCATGATGATGACAACCATGGCTTGTTCATGTAAAAGTTTAAGTAGATAAGATAATTTTATGCAACAAAGTCAATTGCAGATAGCAGAAAATAGCAGATTGTTAAAAAATTTCTACGTAATAGGGCTATAGCGCCACTATATCCTCCATTTAACAACATTTTGTACTAAATAACGTATCGTGGAACAATAACGGTGTGTTCAAATTCCGCTACATTATAGTGGTATAGTGCCACTATAGCTGCTATTTAACAACAACGATTTTATGAGAATGAAGTTTTATGATTTAGCACTGTTTTCACTATATTGCGTGAAAATTTTTGAATGCATGTTGAAATGACAGTTTCTTGTTTCATAGAATATAGAAGATTAATTTGACTGTGGGCTGCCGTTTCATGTTGTTGGCGTGCTTAGTAGCTTGTGGGTTGTGAATCACCCAACACCTTAAAACATCTTTTTATGTTTCATACTACATATGTGATTTTGATTGTAATTTTTGAATTTTCGCTGAAGCTCAAGTTTTTATAATTAATCGACGTAATTATATACCTTTTCTTTACTCTGAGTGTTCTTTTTCTTTTCACTTTCCAATCACAGGGACATCTGCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTTAAGAATGAAGACAACCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATGTGACTCGAAATTGCTCAGTCAGTAATATGCTCAATTTCTATCGTATTGTCAACAAGGAGCTTATCATCTGCTGGTACCATGGATTGGTGGTTAGACCATAGTGACGGATGTGGCCTTCAGTTCTTGCAGGAACCAGCATCTACACTATGTTATTATAGATTTAAAAGGCCTTCAATCTTCATGTTATTATTATGTAATTCATGTTACATTGAGAATATCACTTGGGAACTGGATGAATCTATTATTTAACTGTACTGATTTTCATTTCACCAAAAAAAAAAAAAAAACTGTACTCTGTTCTATTCTTCCATGAGCTCTATGTAAACAAATTTATTTTTCTCTGGGCAAACATCTATGGTTTGCGTATTAGTCATCGTTATAAATGTATGGTTATGGTATATTACTCCTAATGACTCTAGAACAAAGATTGAAAACAAGTGAATGATTCTTATTGTTGTAGAGAGATTGAAAGAGAAGATACAAAAGGTAGACAATGAAGATGATAGCCTTGCACACAAGGCTGCCCTAAAAGAGAACTCTCCTTTCACGCCAGATAATTGTCTAATCACAATTTGA

Protein sequence

>MS.gene97439.t1

MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLKRLKEKIQKVDNEDDSLAHKAALKENSPFTPDNCLITI