Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97439.t1 | XP_003620976.1 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 5.80E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97439.t1 | Q39236 | 91.3 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 2.7e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97439.t1 | B7FH46 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 4.2e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene97439 | 0.814755 | 1.31E-51 | -1.69E-46 |
| MS.gene049272 | MS.gene97439 | 0.801775 | 7.68E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene97439 | 0.812267 | 4.62E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene97439 | 0.820992 | 5.11E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene97439 | 0.812609 | 3.89E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene97439 | 0.853829 | 1.84E-61 | -1.69E-46 |
| MS.gene049873 | MS.gene97439 | 0.863663 | 2.12E-64 | -1.69E-46 |
| MS.gene050303 | MS.gene97439 | 0.814201 | 1.74E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene97439 | 0.834857 | 2.35E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene97439 | 0.810124 | 1.35E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene97439 | 0.842936 | 1.91E-58 | -1.69E-46 |
| MS.gene050561 | MS.gene97439 | 0.836204 | 1.07E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene97439 | 0.821588 | 3.73E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene97439 | 0.822058 | 2.90E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene97439 | 0.821216 | 4.54E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene97439 | 0.834696 | 2.58E-56 | -1.69E-46 |
| MS.gene051700 | MS.gene97439 | 0.805427 | 1.34E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene97439 | 0.831868 | 1.31E-55 | -1.69E-46 |
| MS.gene051957 | MS.gene97439 | 0.804334 | 2.27E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene97439 | 0.817186 | 3.76E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene97439 | 0.838608 | 2.60E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene97439 | 0.826893 | 2.11E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene97439 | 0.837678 | 4.51E-57 | -1.69E-46 |
| MS.gene053006 | MS.gene97439 | 0.839457 | 1.57E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene97439 | 0.852965 | 3.27E-61 | -1.69E-46 |
| MS.gene05365 | MS.gene97439 | 0.806111 | 9.64E-50 | -1.69E-46 |
| MS.gene053995 | MS.gene97439 | 0.850927 | 1.24E-60 | -1.69E-46 |
| MS.gene05415 | MS.gene97439 | 0.809086 | 2.25E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene97439 | 0.815651 | 8.29E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene97439 | 0.801156 | 1.03E-48 | -1.69E-46 |
| MS.gene055623 | MS.gene97439 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene97439 | 0.833502 | 5.14E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene97439 | 0.837992 | 3.75E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene97439 | 0.815769 | 7.80E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene97439 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene97439 | 0.843062 | 1.77E-58 | -1.69E-46 |
| MS.gene056162 | MS.gene97439 | 0.811352 | 7.31E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene97439 | 0.801632 | 8.21E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene97439 | 0.801381 | 9.25E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene97439 | 0.816617 | 5.04E-52 | -1.69E-46 |
| MS.gene056776 | MS.gene97439 | 0.800662 | 1.30E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene97439 | 0.815644 | 8.32E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene97439 | 0.808521 | 2.97E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene97439 | 0.813333 | 2.70E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene97439 | 0.803519 | 3.35E-49 | -1.69E-46 |
| MS.gene057555 | MS.gene97439 | 0.802156 | 6.41E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene97439 | 0.833678 | 4.64E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene97439 | 0.806769 | 7.00E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene97439 | 0.803876 | 2.83E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene97439 | 0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene97439 | 0.827769 | 1.30E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene97439 | 0.826705 | 2.34E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene97439 | 0.809103 | 2.23E-50 | -1.69E-46 |
| MS.gene059317 | MS.gene97439 | 0.81093 | 9.02E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene97439 | 0.813538 | 2.43E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene97439 | 0.867373 | 1.44E-65 | -1.69E-46 |
| MS.gene059935 | MS.gene97439 | 0.808165 | 3.54E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene97439 | 0.820749 | 5.82E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene97439 | 0.825017 | 5.89E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene97439 | 0.834346 | 3.16E-56 | -1.69E-46 |
| MS.gene060572 | MS.gene97439 | 0.83517 | 1.96E-56 | -1.69E-46 |
| MS.gene060907 | MS.gene97439 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene97439 | -0.837257 | 5.78E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97439 | MS.gene82237 | PPI |
| MS.gene97439 | MS.gene48819 | PPI |
| MS.gene76728 | MS.gene97439 | PPI |
| MS.gene97439 | MS.gene78402 | PPI |
| MS.gene97439 | MS.gene42075 | PPI |
| MS.gene052074 | MS.gene97439 | PPI |
| MS.gene77045 | MS.gene97439 | PPI |
| MS.gene31113 | MS.gene97439 | PPI |
| MS.gene87743 | MS.gene97439 | PPI |
| MS.gene97439 | MS.gene45536 | PPI |
| MS.gene87064 | MS.gene97439 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97439.t1 | MTR_7g005540 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 3.48e-75 | 219 |
| MS.gene97439.t1 | MTR_5g066740 | 87.500 | 104 | 13 | 0 | 1 | 104 | 7 | 110 | 4.16e-66 | 196 |
| MS.gene97439.t1 | MTR_7g005540 | 100.000 | 60 | 0 | 0 | 1 | 60 | 1 | 60 | 2.72e-37 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97439.t1 | AT4G24440 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.51e-69 | 205 |
| MS.gene97439.t1 | AT4G24440 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.51e-69 | 205 |
Find 23 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCCTGAGATTGCGATTC+AGG | 0.222867 | 7.4:-94621663 | MS.gene97439:CDS |
| AATGTGCCTCACTGAGACTT+TGG | 0.433161 | 7.4:-94621711 | MS.gene97439:CDS |
| ATTGTGATTAGACAATTATC+TGG | 0.433788 | 7.4:+94618202 | None:intergenic |
| GTAGTCTATGACTGAAGCTC+TGG | 0.460011 | 7.4:-94621524 | MS.gene97439:intron |
| TTAGGGCAGCCTTGTGTGCA+AGG | 0.462107 | 7.4:+94618245 | None:intergenic |
| ATTGAAAGAGAAGATACAAA+AGG | 0.468041 | 7.4:-94618287 | MS.gene97439:CDS |
| GGTTCTCGTTCAGTTTGATA+AGG | 0.472558 | 7.4:-94621642 | MS.gene97439:intron |
| CAAAGCATCTTGTAAGATGA+AGG | 0.489651 | 7.4:+94618827 | None:intergenic |
| TAACCCGTCCAACATTCTCT+TGG | 0.494051 | 7.4:+94618787 | None:intergenic |
| CACTGAGACTTTGGACGAGA+TGG | 0.495885 | 7.4:-94621702 | MS.gene97439:CDS |
| AGAACCTGAATCGCAATCTC+AGG | 0.497392 | 7.4:+94621659 | None:intergenic |
| TAAAAGCAAGGTCTCTATCA+AGG | 0.505886 | 7.4:-94621491 | MS.gene97439:intron |
| AGATGATAGCCTTGCACACA+AGG | 0.527665 | 7.4:-94618254 | MS.gene97439:CDS |
| TGTTGGACGGGTTAAAATAG+TGG | 0.534469 | 7.4:-94618778 | MS.gene97439:CDS |
| AGACAATTATCTGGCGTGAA+AGG | 0.536018 | 7.4:+94618211 | None:intergenic |
| CTTTATCGTAGGTCGACAAT+CGG | 0.550857 | 7.4:-94621734 | MS.gene97439:CDS |
| GAAGACAACCAAGAGAATGT+TGG | 0.561206 | 7.4:-94618795 | MS.gene97439:CDS |
| TTGGACGAGATGGTTCAGAA+TGG | 0.589806 | 7.4:-94621692 | MS.gene97439:CDS |
| CAACCAAGAGAATGTTGGAC+GGG | 0.592439 | 7.4:-94618790 | MS.gene97439:CDS |
| GGAAACACAAGTTAAAAGCA+AGG | 0.611187 | 7.4:-94621503 | MS.gene97439:CDS |
| CGACATTCGAACTTTATCGT+AGG | 0.640482 | 7.4:-94621745 | MS.gene97439:CDS |
| ACAACCAAGAGAATGTTGGA+CGG | 0.645466 | 7.4:-94618791 | MS.gene97439:CDS |
| TCTCGTCCAAAGTCTCAGTG+AGG | 0.751939 | 7.4:+94621705 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTGAATAAATTCTT+TGG | - | chr7.4:94619618-94619637 | MS.gene97439:intron | 10.0% |
| !! | ATTTATTGAATAAATTCTTT+GGG | - | chr7.4:94619619-94619638 | MS.gene97439:intron | 10.0% |
| !! | TATGTTATTATAGATTTAAA+AGG | - | chr7.4:94621341-94621360 | MS.gene97439:intron | 10.0% |
| !!! | TACAGTTTTTTTTTTTTTTT+TGG | + | chr7.4:94621468-94621487 | None:intergenic | 10.0% |
| !! | TAAAAAATTTCTACGTAATA+GGG | - | chr7.4:94620587-94620606 | MS.gene97439:intron | 15.0% |
| !! | TTAAAAAATTTCTACGTAAT+AGG | - | chr7.4:94620586-94620605 | MS.gene97439:intron | 15.0% |
| !! | TTTATTGAATAAATTCTTTG+GGG | - | chr7.4:94619620-94619639 | MS.gene97439:intron | 15.0% |
| !! | TTTGATGTGTAATTAAAATT+TGG | + | chr7.4:94619142-94619161 | None:intergenic | 15.0% |
| !!! | AAACAAATTTATTTTTCTCT+GGG | - | chr7.4:94621518-94621537 | MS.gene97439:CDS | 15.0% |
| !!! | AAACATAAAAAGATGTTTTA+AGG | + | chr7.4:94620928-94620947 | None:intergenic | 15.0% |
| !!! | TAAACAAATTTATTTTTCTC+TGG | - | chr7.4:94621517-94621536 | MS.gene97439:CDS | 15.0% |
| !!! | TACCTTTTTACTTAATTTTT+TGG | - | chr7.4:94620225-94620244 | MS.gene97439:intron | 15.0% |
| !! | AATAATAACATGAAGATTGA+AGG | + | chr7.4:94621367-94621386 | None:intergenic | 20.0% |
| !! | AGCCAAAAAATTAAGTAAAA+AGG | + | chr7.4:94620230-94620249 | None:intergenic | 20.0% |
| !! | ATAATCATGAGTAAAAAGTA+TGG | + | chr7.4:94620319-94620338 | None:intergenic | 20.0% |
| !! | ATTAAGTAAAAAGGTAATTG+TGG | + | chr7.4:94620221-94620240 | None:intergenic | 20.0% |
| !! | TAGTACAAAATGTTGTTAAA+TGG | + | chr7.4:94620633-94620652 | None:intergenic | 20.0% |
| !! | TATTTGCATTATCTTCTATT+TGG | - | chr7.4:94620048-94620067 | MS.gene97439:intron | 20.0% |
| !! | TTAAGTAAAAAGGTAATTGT+GGG | + | chr7.4:94620220-94620239 | None:intergenic | 20.0% |
| !! | TTACATTTAGAAATTCCTTA+TGG | - | chr7.4:94619986-94620005 | MS.gene97439:intron | 20.0% |
| !!! | CTTATTATTTTAATTGCATG+TGG | - | chr7.4:94618395-94618414 | MS.gene97439:intron | 20.0% |
| !!! | TAAAATTTGGTTTAAGACAT+TGG | + | chr7.4:94619129-94619148 | None:intergenic | 20.0% |
| !!! | TTCATTCAAGGTTTAATTTT+TGG | - | chr7.4:94620082-94620101 | MS.gene97439:intron | 20.0% |
| !!! | TTTTTACCTTTCAATTCAAT+GGG | - | chr7.4:94619004-94619023 | MS.gene97439:intron | 20.0% |
| ! | ATAACAGTCATATATGTCAA+TGG | + | chr7.4:94620347-94620366 | None:intergenic | 25.0% |
| ! | ATGACATGTTTCAGTATAAA+GGG | + | chr7.4:94619307-94619326 | None:intergenic | 25.0% |
| ! | ATTCAGTTACAAATCCTATT+TGG | + | chr7.4:94619591-94619610 | None:intergenic | 25.0% |
| ! | ATTGAAAGAGAAGATACAAA+AGG | - | chr7.4:94621660-94621679 | MS.gene97439:CDS | 25.0% |
| ! | ATTGTGATTAGACAATTATC+TGG | + | chr7.4:94621748-94621767 | None:intergenic | 25.0% |
| ! | ATTGTTAAGATTGTCTAGTA+GGG | - | chr7.4:94618544-94618563 | MS.gene97439:intron | 25.0% |
| ! | CTATAATTCACCATCAAATT+TGG | + | chr7.4:94619546-94619565 | None:intergenic | 25.0% |
| ! | GTTTGTACTAGGAATAAATA+TGG | + | chr7.4:94619811-94619830 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTTAAATGG+AGG | + | chr7.4:94620630-94620649 | None:intergenic | 25.0% |
| ! | TAGAATTGTCTGATAAAAAC+TGG | - | chr7.4:94619563-94619582 | MS.gene97439:intron | 25.0% |
| ! | TAGTCATCGTTATAAATGTA+TGG | - | chr7.4:94621563-94621582 | MS.gene97439:intron | 25.0% |
| ! | TATTGTTAAGATTGTCTAGT+AGG | - | chr7.4:94618543-94618562 | MS.gene97439:intron | 25.0% |
| ! | TCGTTATAAATGTATGGTTA+TGG | - | chr7.4:94621569-94621588 | MS.gene97439:intron | 25.0% |
| ! | TGTTGAAAAACCAAATTTGA+TGG | - | chr7.4:94619533-94619552 | MS.gene97439:intron | 25.0% |
| ! | TTACATTGAGAATATCACTT+GGG | - | chr7.4:94621399-94621418 | MS.gene97439:intron | 25.0% |
| !! | ACATCAAATAACAATTTTCC+GGG | - | chr7.4:94619154-94619173 | MS.gene97439:intron | 25.0% |
| !! | ATAGAAGATTAATTTGACTG+TGG | - | chr7.4:94620844-94620863 | MS.gene97439:intron | 25.0% |
| !! | ATCTTTTGTTAGATAGTGTA+AGG | - | chr7.4:94618490-94618509 | MS.gene97439:intron | 25.0% |
| !! | CACATCAAATAACAATTTTC+CGG | - | chr7.4:94619153-94619172 | MS.gene97439:intron | 25.0% |
| !! | CTTTTTACCTTTCAATTCAA+TGG | - | chr7.4:94619003-94619022 | MS.gene97439:intron | 25.0% |
| !! | TAGAAGATTAATTTGACTGT+GGG | - | chr7.4:94620845-94620864 | MS.gene97439:intron | 25.0% |
| !! | TCTCATAGTTTGGAATAAAT+CGG | + | chr7.4:94619038-94619057 | None:intergenic | 25.0% |
| !! | TTCATCTCATTAGTTTGAAT+TGG | + | chr7.4:94618726-94618745 | None:intergenic | 25.0% |
| !!! | AAAAAGATGTTTTAAGGTGT+TGG | + | chr7.4:94620922-94620941 | None:intergenic | 25.0% |
| !!! | AAAAGATGTTTTAAGGTGTT+GGG | + | chr7.4:94620921-94620940 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAGATTCTTAAAC+CGG | + | chr7.4:94619258-94619277 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATCTCTTTTTGA+GGG | - | chr7.4:94620403-94620422 | MS.gene97439:intron | 25.0% |
| AATGAGATGAAGTTTACCTA+GGG | - | chr7.4:94618735-94618754 | MS.gene97439:intron | 30.0% | |
| ACACAGAACTAAAATTACAC+AGG | - | chr7.4:94619679-94619698 | MS.gene97439:intron | 30.0% | |
| ACTATACCACTATAATGTAG+CGG | + | chr7.4:94620694-94620713 | None:intergenic | 30.0% | |
| ATACAACTGTTAACACACAA+AGG | + | chr7.4:94619380-94619399 | None:intergenic | 30.0% | |
| ATTTAGAAATTCCTTATGGC+GGG | - | chr7.4:94619990-94620009 | MS.gene97439:intron | 30.0% | |
| ATTTGTTTACATAGAGCTCA+TGG | + | chr7.4:94621506-94621525 | None:intergenic | 30.0% | |
| CATTGAGCAACAAATATACA+AGG | + | chr7.4:94618616-94618635 | None:intergenic | 30.0% | |
| CATTTAGAAATTCCTTATGG+CGG | - | chr7.4:94619989-94620008 | MS.gene97439:intron | 30.0% | |
| GAAACTAAGTAGACTATTGT+TGG | - | chr7.4:94620434-94620453 | MS.gene97439:intron | 30.0% | |
| GAAAGTTTGTGAATGAGTTT+CGG | + | chr7.4:94619218-94619237 | None:intergenic | 30.0% | |
| GAGATTTAAAGAGATTGAGT+TGG | - | chr7.4:94620183-94620202 | MS.gene97439:intron | 30.0% | |
| GATAAAAACTGGTACCAAAT+AGG | - | chr7.4:94619574-94619593 | MS.gene97439:intron | 30.0% | |
| GATGACATGTTTCAGTATAA+AGG | + | chr7.4:94619308-94619327 | None:intergenic | 30.0% | |
| GATTGAGCCAAAAATATACA+AGG | + | chr7.4:94618648-94618667 | None:intergenic | 30.0% | |
| GGAAGTCATGACAAAAAAAA+TGG | + | chr7.4:94620298-94620317 | None:intergenic | 30.0% | |
| GGTTTAAGAATCTCTTGAAA+AGG | - | chr7.4:94619257-94619276 | MS.gene97439:intron | 30.0% | |
| GTTACATTGAGAATATCACT+TGG | - | chr7.4:94621398-94621417 | MS.gene97439:intron | 30.0% | |
| GTTATTGTAGAATTATTGCG+TGG | + | chr7.4:94619770-94619789 | None:intergenic | 30.0% | |
| TAAAATCAAAGTCGAGGATA+TGG | + | chr7.4:94619099-94619118 | None:intergenic | 30.0% | |
| TAATAACATAGTGTAGATGC+TGG | + | chr7.4:94621331-94621350 | None:intergenic | 30.0% | |
| TAATGAGATGAAGTTTACCT+AGG | - | chr7.4:94618734-94618753 | MS.gene97439:intron | 30.0% | |
| TCATGAAGAAATACTATGCA+AGG | + | chr7.4:94619941-94619960 | None:intergenic | 30.0% | |
| TGGAAGAACATGAAAAAATG+AGG | + | chr7.4:94619187-94619206 | None:intergenic | 30.0% | |
| TGTGCAGTTAGTATCTATTA+TGG | + | chr7.4:94619875-94619894 | None:intergenic | 30.0% | |
| TTGTACTAAATAACGTATCG+TGG | - | chr7.4:94620645-94620664 | MS.gene97439:intron | 30.0% | |
| TTGTTAAATAGCAGCTATAG+TGG | + | chr7.4:94620718-94620737 | None:intergenic | 30.0% | |
| TTGTTAAATGGAGGATATAG+TGG | + | chr7.4:94620621-94620640 | None:intergenic | 30.0% | |
| TTTATTCCAAACTATGAGAG+AGG | - | chr7.4:94619039-94619058 | MS.gene97439:intron | 30.0% | |
| TTTCTATCGTATTGTCAACA+AGG | - | chr7.4:94621230-94621249 | MS.gene97439:intron | 30.0% | |
| ! | ACACAAAGGTATATTGTAGA+GGG | + | chr7.4:94619366-94619385 | None:intergenic | 30.0% |
| ! | ACAGATTTTGTGACAATGTT+TGG | - | chr7.4:94621096-94621115 | MS.gene97439:intron | 30.0% |
| ! | AGAAAAACTGAAACTGACTT+TGG | + | chr7.4:94619917-94619936 | None:intergenic | 30.0% |
| ! | GCATATTTTCTGTTTGTACT+AGG | + | chr7.4:94619822-94619841 | None:intergenic | 30.0% |
| ! | GTGTTCTTTATTTATCAGCA+TGG | + | chr7.4:94619418-94619437 | None:intergenic | 30.0% |
| !! | ATCTTTGTTCTAGAGTCATT+AGG | + | chr7.4:94621604-94621623 | None:intergenic | 30.0% |
| !! | GTATCAGTTTTTCAATCCAA+TGG | - | chr7.4:94618966-94618985 | MS.gene97439:intron | 30.0% |
| !! | TACTGAGCCTTGTATATTTT+TGG | - | chr7.4:94618638-94618657 | MS.gene97439:intron | 30.0% |
| !!! | AGTGTAAGGTGTTGATTTTT+TGG | - | chr7.4:94618504-94618523 | MS.gene97439:intron | 30.0% |
| !!! | ATTTTTTGGCTCTAAACATG+AGG | - | chr7.4:94620239-94620258 | MS.gene97439:intron | 30.0% |
| !!! | GTTTTTTCCATCTCTTTTTG+AGG | - | chr7.4:94620402-94620421 | MS.gene97439:intron | 30.0% |
| AAAAAATGAGGAAGAGAACC+CGG | + | chr7.4:94619175-94619194 | None:intergenic | 35.0% | |
| AACGTATCGTGGAACAATAA+CGG | - | chr7.4:94620656-94620675 | MS.gene97439:intron | 35.0% | |
| AAGAATCTCTTGAAAAGGTG+TGG | - | chr7.4:94619262-94619281 | MS.gene97439:intron | 35.0% | |
| ACAATTCAAGTCCACAAATC+AGG | - | chr7.4:94619436-94619455 | MS.gene97439:intron | 35.0% | |
| AGAATTATTGCGTGGTTAAC+TGG | + | chr7.4:94619762-94619781 | None:intergenic | 35.0% | |
| ATGAGATCGTATAGTGCAAA+AGG | + | chr7.4:94620382-94620401 | None:intergenic | 35.0% | |
| CAAATTCCGCTACATTATAG+TGG | - | chr7.4:94620685-94620704 | MS.gene97439:intron | 35.0% | |
| CAGTTTGATAAGGTAGGTTT+CGG | - | chr7.4:94618315-94618334 | MS.gene97439:intron | 35.0% | |
| CCAACTTTACGAATCTCTAA+AGG | + | chr7.4:94619340-94619359 | None:intergenic | 35.0% | |
| CCACAAATCAGGATCAAATA+GGG | - | chr7.4:94619447-94619466 | MS.gene97439:intron | 35.0% | |
| GAACACTCAGAGTAAAGAAA+AGG | + | chr7.4:94621034-94621053 | None:intergenic | 35.0% | |
| GCATAGTATTTCTTCATGAG+AGG | - | chr7.4:94619942-94619961 | MS.gene97439:intron | 35.0% | |
| GGAAACACAAGTTAAAAGCA+AGG | - | chr7.4:94618444-94618463 | MS.gene97439:intron | 35.0% | |
| GTCGCATTTCAGTTTAAGTA+TGG | - | chr7.4:94618757-94618776 | MS.gene97439:CDS | 35.0% | |
| TAAAAGCAAGGTCTCTATCA+AGG | - | chr7.4:94618456-94618475 | MS.gene97439:intron | 35.0% | |
| TAAACATGAGGTTCATTTGC+CGG | - | chr7.4:94620251-94620270 | MS.gene97439:intron | 35.0% | |
| TAAAGATGCCTAACTTGAGA+GGG | + | chr7.4:94620019-94620038 | None:intergenic | 35.0% | |
| TAGACTATTGTTGGATAGCA+AGG | - | chr7.4:94620443-94620462 | MS.gene97439:intron | 35.0% | |
| TCCAAGTAAAATCAAAGTCG+AGG | + | chr7.4:94619105-94619124 | None:intergenic | 35.0% | |
| TCCACAAATCAGGATCAAAT+AGG | - | chr7.4:94619446-94619465 | MS.gene97439:intron | 35.0% | |
| TGTGTGTTAACAGTTGTATC+TGG | - | chr7.4:94619381-94619400 | MS.gene97439:intron | 35.0% | |
| TTAAAGATGCCTAACTTGAG+AGG | + | chr7.4:94620020-94620039 | None:intergenic | 35.0% | |
| TTAAGATTGTCTAGTAGGGA+TGG | - | chr7.4:94618548-94618567 | MS.gene97439:intron | 35.0% | |
| TTACCTTTCAATTCAATGGG+TGG | - | chr7.4:94619007-94619026 | MS.gene97439:intron | 35.0% | |
| ! | ACTTTTACATGAACAAGCCA+TGG | + | chr7.4:94620503-94620522 | None:intergenic | 35.0% |
| ! | CAAAGCATCTTGTAAGATGA+AGG | + | chr7.4:94621123-94621142 | None:intergenic | 35.0% |
| ! | CACACAAAGGTATATTGTAG+AGG | + | chr7.4:94619367-94619386 | None:intergenic | 35.0% |
| ! | CCTTTAGAGATTCGTAAAGT+TGG | - | chr7.4:94619337-94619356 | MS.gene97439:intron | 35.0% |
| ! | CTTTTCACTTTCCAATCACA+GGG | - | chr7.4:94621059-94621078 | MS.gene97439:intron | 35.0% |
| ! | GAAAGGAGAGTTCTCTTTTA+GGG | + | chr7.4:94621722-94621741 | None:intergenic | 35.0% |
| ! | GAATCTCTAAAGGCTGAAAT+AGG | + | chr7.4:94619330-94619349 | None:intergenic | 35.0% |
| ! | TCTCATTAGTTTGAATTGGC+TGG | + | chr7.4:94618722-94618741 | None:intergenic | 35.0% |
| ! | TCTTTTCACTTTCCAATCAC+AGG | - | chr7.4:94621058-94621077 | MS.gene97439:intron | 35.0% |
| ! | TGAAAGGAGAGTTCTCTTTT+AGG | + | chr7.4:94621723-94621742 | None:intergenic | 35.0% |
| !! | TCCTCGACTTTGATTTTACT+TGG | - | chr7.4:94619101-94619120 | MS.gene97439:intron | 35.0% |
| !!! | AAGGTGTTGATTTTTTGGTG+AGG | - | chr7.4:94618509-94618528 | MS.gene97439:intron | 35.0% |
| AAACATGAGGTTCATTTGCC+GGG | - | chr7.4:94620252-94620271 | MS.gene97439:intron | 40.0% | |
| ACAACCAAGAGAATGTTGGA+CGG | - | chr7.4:94621156-94621175 | MS.gene97439:intron | 40.0% | |
| ACATCTCCTCTCTCATAGTT+TGG | + | chr7.4:94619048-94619067 | None:intergenic | 40.0% | |
| AGACAATTATCTGGCGTGAA+AGG | + | chr7.4:94621739-94621758 | None:intergenic | 40.0% | |
| AGTTTGTGAATGAGTTTCGG+AGG | + | chr7.4:94619215-94619234 | None:intergenic | 40.0% | |
| ATATGACCAAACTGCATACC+CGG | + | chr7.4:94620273-94620292 | None:intergenic | 40.0% | |
| ATTGCGTGGTTAACTGGAAT+AGG | + | chr7.4:94619756-94619775 | None:intergenic | 40.0% | |
| ATTGTGAACTGTCTCTGACT+TGG | + | chr7.4:94619654-94619673 | None:intergenic | 40.0% | |
| CAACCACCCATTGAATTGAA+AGG | + | chr7.4:94619013-94619032 | None:intergenic | 40.0% | |
| CGACATTCGAACTTTATCGT+AGG | - | chr7.4:94618202-94618221 | MS.gene97439:CDS | 40.0% | |
| CTCGTTCAGTTTGATAAGGT+AGG | - | chr7.4:94618309-94618328 | MS.gene97439:intron | 40.0% | |
| CTTTATCGTAGGTCGACAAT+CGG | - | chr7.4:94618213-94618232 | MS.gene97439:CDS | 40.0% | |
| GAAGACAACCAAGAGAATGT+TGG | - | chr7.4:94621152-94621171 | MS.gene97439:intron | 40.0% | |
| GAGAAGAAACGCTTCATTCA+AGG | - | chr7.4:94620070-94620089 | MS.gene97439:intron | 40.0% | |
| GAGACTACATGTTTCGTTTC+TGG | - | chr7.4:94618350-94618369 | MS.gene97439:intron | 40.0% | |
| GATAAGGTAGGTTTCGGAAT+TGG | - | chr7.4:94618321-94618340 | MS.gene97439:intron | 40.0% | |
| GGTTCTCGTTCAGTTTGATA+AGG | - | chr7.4:94618305-94618324 | MS.gene97439:intron | 40.0% | |
| TGAGAATATCACTTGGGAAC+TGG | - | chr7.4:94621405-94621424 | MS.gene97439:intron | 40.0% | |
| TTAAACTGAAATGCGACCCT+AGG | + | chr7.4:94618754-94618773 | None:intergenic | 40.0% | |
| TTGTGAACTGTCTCTGACTT+GGG | + | chr7.4:94619653-94619672 | None:intergenic | 40.0% | |
| TTTCTCTGGGCAAACATCTA+TGG | - | chr7.4:94621531-94621550 | MS.gene97439:intron | 40.0% | |
| ! | ACATGTTTCGTTTCTGGATC+TGG | - | chr7.4:94618356-94618375 | MS.gene97439:intron | 40.0% |
| ! | CCCTATTTGATCCTGATTTG+TGG | + | chr7.4:94619450-94619469 | None:intergenic | 40.0% |
| ! | GGATTAGTGAAACACAGTCA+CGG | - | chr7.4:94619700-94619719 | MS.gene97439:intron | 40.0% |
| ! | TCTCATGATGATGACAACCA+TGG | - | chr7.4:94620483-94620502 | MS.gene97439:intron | 40.0% |
| !! | TGTTGGACGGGTTAAAATAG+TGG | - | chr7.4:94621169-94621188 | MS.gene97439:intron | 40.0% |
| !!! | TTTTTTGGTGAGGTGAAGCA+TGG | - | chr7.4:94618519-94618538 | MS.gene97439:intron | 40.0% |
| AATCAGAGAGACGAAGGGTT+TGG | - | chr7.4:94618664-94618683 | MS.gene97439:intron | 45.0% | |
| AATGAGTTTCGGAGGATGGA+TGG | + | chr7.4:94619207-94619226 | None:intergenic | 45.0% | |
| AATGTGCCTCACTGAGACTT+TGG | - | chr7.4:94618236-94618255 | MS.gene97439:CDS | 45.0% | |
| ACAAGGAGCTTATCATCTGC+TGG | - | chr7.4:94621247-94621266 | MS.gene97439:intron | 45.0% | |
| AGAACCTGAATCGCAATCTC+AGG | + | chr7.4:94618291-94618310 | None:intergenic | 45.0% | |
| AGCAAAAGTGACACAGCCAT+TGG | + | chr7.4:94618985-94619004 | None:intergenic | 45.0% | |
| AGCACGCCAACAACATGAAA+CGG | + | chr7.4:94620874-94620893 | None:intergenic | 45.0% | |
| ATGGTCTAACCACCAATCCA+TGG | + | chr7.4:94621275-94621294 | None:intergenic | 45.0% | |
| CAACCAAGAGAATGTTGGAC+GGG | - | chr7.4:94621157-94621176 | MS.gene97439:intron | 45.0% | |
| CTTATCATCTGCTGGTACCA+TGG | - | chr7.4:94621255-94621274 | MS.gene97439:intron | 45.0% | |
| GTAGTCTATGACTGAAGCTC+TGG | - | chr7.4:94618423-94618442 | MS.gene97439:intron | 45.0% | |
| TAACCCGTCCAACATTCTCT+TGG | + | chr7.4:94621163-94621182 | None:intergenic | 45.0% | |
| TAGTCCTGAGATTGCGATTC+AGG | - | chr7.4:94618284-94618303 | MS.gene97439:CDS | 45.0% | |
| TATGCAGATGTCCCTGTGAT+TGG | + | chr7.4:94621073-94621092 | None:intergenic | 45.0% | |
| TCTGATCACGCTCATTGTTC+CGG | - | chr7.4:94619236-94619255 | MS.gene97439:intron | 45.0% | |
| TGGTGGTTAGACCATAGTGA+CGG | - | chr7.4:94621280-94621299 | MS.gene97439:intron | 45.0% | |
| TGTGAATGAGTTTCGGAGGA+TGG | + | chr7.4:94619211-94619230 | None:intergenic | 45.0% | |
| TGTGTGTGGACACTTGTTTG+AGG | - | chr7.4:94618817-94618836 | MS.gene97439:CDS | 45.0% | |
| TTGGACGAGATGGTTCAGAA+TGG | - | chr7.4:94618255-94618274 | MS.gene97439:CDS | 45.0% | |
| ! | AGATGATAGCCTTGCACACA+AGG | - | chr7.4:94621693-94621712 | MS.gene97439:CDS | 45.0% |
| ! | CTCTTGAAAAGGTGTGGCAT+TGG | - | chr7.4:94619268-94619287 | MS.gene97439:intron | 45.0% |
| ! | TAGGTTTCGGAATTGGTGCT+AGG | - | chr7.4:94618328-94618347 | MS.gene97439:intron | 45.0% |
| !! | ACAAAGCTCTAGAACCCTTG+TGG | + | chr7.4:94619729-94619748 | None:intergenic | 45.0% |
| !! | CAGACGTAACTTGTTACGAG+TGG | - | chr7.4:94618845-94618864 | MS.gene97439:CDS | 45.0% |
| !! | CCATCTCTTTTTGAGGGAGT+GGG | - | chr7.4:94620409-94620428 | MS.gene97439:intron | 45.0% |
| !! | TCCATCTCTTTTTGAGGGAG+TGG | - | chr7.4:94620408-94620427 | MS.gene97439:intron | 45.0% |
| !! | TTAGACCATAGTGACGGATG+TGG | - | chr7.4:94621286-94621305 | MS.gene97439:intron | 45.0% |
| ACACAGTCACGGTTTCCACA+AGG | - | chr7.4:94619711-94619730 | MS.gene97439:intron | 50.0% | |
| AGAGATACGCACACTGTGTG+TGG | - | chr7.4:94618803-94618822 | MS.gene97439:CDS | 50.0% | |
| ATGTGGCCTTCAGTTCTTGC+AGG | - | chr7.4:94621303-94621322 | MS.gene97439:intron | 50.0% | |
| CACAGTCACGGTTTCCACAA+GGG | - | chr7.4:94619712-94619731 | MS.gene97439:intron | 50.0% | |
| CACTGAGACTTTGGACGAGA+TGG | - | chr7.4:94618245-94618264 | MS.gene97439:CDS | 50.0% | |
| CATCTGCTGGTACCATGGAT+TGG | - | chr7.4:94621260-94621279 | MS.gene97439:intron | 50.0% | |
| CATTTGCCGGGTATGCAGTT+TGG | - | chr7.4:94620264-94620283 | MS.gene97439:intron | 50.0% | |
| CCCACTCCCTCAAAAAGAGA+TGG | + | chr7.4:94620412-94620431 | None:intergenic | 50.0% | |
| CTGGTTCCTGCAAGAACTGA+AGG | + | chr7.4:94621312-94621331 | None:intergenic | 50.0% | |
| GGCTCAATCAGAGAGACGAA+GGG | - | chr7.4:94618659-94618678 | MS.gene97439:intron | 50.0% | |
| TCTCGTCCAAAGTCTCAGTG+AGG | + | chr7.4:94618245-94618264 | None:intergenic | 50.0% | |
| TGGCTCAATCAGAGAGACGA+AGG | - | chr7.4:94618658-94618677 | MS.gene97439:intron | 50.0% | |
| TTGGCGTGCTTAGTAGCTTG+TGG | - | chr7.4:94620884-94620903 | MS.gene97439:intron | 50.0% | |
| ! | TGGCGTGCTTAGTAGCTTGT+GGG | - | chr7.4:94620885-94620904 | MS.gene97439:intron | 50.0% |
| AGAGAGACGAAGGGTTTGGC+TGG | - | chr7.4:94618668-94618687 | MS.gene97439:intron | 55.0% | |
| GAAGGCCACATCCGTCACTA+TGG | + | chr7.4:94621294-94621313 | None:intergenic | 55.0% | |
| GCGGGATACCCTCTCAAGTT+AGG | - | chr7.4:94620008-94620027 | MS.gene97439:intron | 55.0% | |
| ! | GGGCTGCCGTTTCATGTTGT+TGG | - | chr7.4:94620865-94620884 | MS.gene97439:intron | 55.0% |
| ! | TTAGGGCAGCCTTGTGTGCA+AGG | + | chr7.4:94621705-94621724 | None:intergenic | 55.0% |
| !! | CTGCTGGTACCATGGATTGG+TGG | - | chr7.4:94621263-94621282 | MS.gene97439:intron | 55.0% |
| !! | TGAGAGGGTATCCCGCCATA+AGG | + | chr7.4:94620004-94620023 | None:intergenic | 55.0% |
| !! | TGGTAAGTGAGAGCACCCTC+AGG | - | chr7.4:94618688-94618707 | MS.gene97439:intron | 55.0% |
| TGGCTGGCAGTGTGACCTGA+GGG | + | chr7.4:94618706-94618725 | None:intergenic | 60.0% | |
| TTGGCTGGCAGTGTGACCTG+AGG | + | chr7.4:94618707-94618726 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 94618198 | 94621771 | 94618198 | ID=MS.gene97439 |
| chr7.4 | mRNA | 94618198 | 94621771 | 94618198 | ID=MS.gene97439.t1;Parent=MS.gene97439 |
| chr7.4 | exon | 94621643 | 94621771 | 94621643 | ID=MS.gene97439.t1.exon1;Parent=MS.gene97439.t1 |
| chr7.4 | CDS | 94621643 | 94621771 | 94621643 | ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1 |
| chr7.4 | exon | 94621492 | 94621542 | 94621492 | ID=MS.gene97439.t1.exon2;Parent=MS.gene97439.t1 |
| chr7.4 | CDS | 94621492 | 94621542 | 94621492 | ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1 |
| chr7.4 | exon | 94618757 | 94618889 | 94618757 | ID=MS.gene97439.t1.exon3;Parent=MS.gene97439.t1 |
| chr7.4 | CDS | 94618757 | 94618889 | 94618757 | ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1 |
| chr7.4 | exon | 94618198 | 94618313 | 94618198 | ID=MS.gene97439.t1.exon4;Parent=MS.gene97439.t1 |
| chr7.4 | CDS | 94618198 | 94618313 | 94618198 | ID=cds.MS.gene97439.t1;Parent=MS.gene97439.t1 |
| Gene Sequence |
| Protein sequence |
