Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98840.t1 | XP_003620482.1 | 100 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.90E-131 | 478.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98840.t1 | Q7DLR9 | 83.7 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 1.2e-113 | 410.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98840.t1 | G7KN41 | 100.0 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.4e-131 | 478.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050689 | MS.gene98840 | 0.812264 | 4.63E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene98840 | 0.80817 | 3.53E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene98840 | 0.821328 | 4.28E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene98840 | 0.807908 | 4.02E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98840.t1 | MTR_6g084450 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 8.64e-175 | 479 |
| MS.gene98840.t1 | MTR_4g060540 | 91.810 | 232 | 19 | 0 | 1 | 232 | 1 | 232 | 5.98e-165 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98840.t1 | AT1G56450 | 83.700 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 4.13e-148 | 412 |
Find 67 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTCATGGCTGCTGATA+TGG | 0.179124 | 6.1:-73985787 | MS.gene98840:CDS |
| TGGGGAAATAAGTGACTTTC+AGG | 0.197112 | 6.1:-73985264 | MS.gene98840:CDS |
| TGTTCTTGGTGGTGTTAAAA+AGG | 0.203874 | 6.1:-73984846 | MS.gene98840:CDS |
| TTGTGGAACTCACTTGTTCT+TGG | 0.291580 | 6.1:-73984860 | MS.gene98840:CDS |
| ATTGGAAAGCACTCCCTTCT+TGG | 0.302569 | 6.1:-73985293 | MS.gene98840:CDS |
| GTCTGCTGTGAACAAGATTC+AGG | 0.323330 | 6.1:-73984553 | MS.gene98840:intron |
| CATCCCACATGTTATCAATA+AGG | 0.331324 | 6.1:+73984963 | None:intergenic |
| CTTATCCAGGTTAGCATGAT+TGG | 0.332840 | 6.1:-73984726 | MS.gene98840:intron |
| GTGGGATGATGGGAACTCTT+TGG | 0.337980 | 6.1:-73984948 | MS.gene98840:CDS |
| CATTCTCTTTGAAAACATAC+TGG | 0.339670 | 6.1:-73983027 | MS.gene98840:CDS |
| TTCCACTCATCGCGGAGAAT+TGG | 0.357012 | 6.1:+73984648 | None:intergenic |
| TAACTCGGGTGATGTATAAT+AGG | 0.358277 | 6.1:-73984901 | MS.gene98840:CDS |
| GAAGACAACCATGTGGCAAC+TGG | 0.364317 | 6.1:-73984693 | MS.gene98840:CDS |
| TGGGATGATGGGAACTCTTT+GGG | 0.367264 | 6.1:-73984947 | MS.gene98840:CDS |
| GTTGAGCGTTTGAAGCCTAT+TGG | 0.368912 | 6.1:-73985311 | MS.gene98840:CDS |
| AACTAATTCACAGGTTCATA+TGG | 0.374338 | 6.1:-73985356 | MS.gene98840:intron |
| TTTACAGATATCTAAAATTA+CGG | 0.374574 | 6.1:-73983074 | MS.gene98840:intron |
| AAATAGTTGTGGACCTCCTT+AGG | 0.402257 | 6.1:+73984923 | None:intergenic |
| AACCATGTGGCAACTGGGCT+TGG | 0.423568 | 6.1:-73984687 | MS.gene98840:CDS |
| AGAATACATACAGAGTTCTC+TGG | 0.424755 | 6.1:+73985976 | None:intergenic |
| CACTCCCTTCTTGGTGCTAG+TGG | 0.427822 | 6.1:-73985284 | MS.gene98840:CDS |
| TCTAGGTACCCATACGTAAC+TGG | 0.433194 | 6.1:-73985843 | MS.gene98840:intron |
| GAAAACATACTGGGAGTTCT+CGG | 0.436500 | 6.1:-73983017 | MS.gene98840:CDS |
| ATTCTCATGGCTGCTGATAT+GGG | 0.437064 | 6.1:-73985786 | MS.gene98840:CDS |
| AGAAGGGAGTGCTTTCCAAT+AGG | 0.444361 | 6.1:+73985296 | None:intergenic |
| CAGTTGGTGCTGAAGGTTCA+TGG | 0.451533 | 6.1:-73982979 | MS.gene98840:CDS |
| ACCAACTGTTGGATTCTTGA+AGG | 0.455188 | 6.1:+73982994 | None:intergenic |
| TGGAACTCACTTGTTCTTGG+TGG | 0.462785 | 6.1:-73984857 | MS.gene98840:CDS |
| ATTGATAACATGTGGGATGA+TGG | 0.491956 | 6.1:-73984959 | MS.gene98840:CDS |
| TGGGAACTCTTTGGGACCTA+AGG | 0.494345 | 6.1:-73984939 | MS.gene98840:CDS |
| ATATCTAAAATTACGGAAGA+AGG | 0.519609 | 6.1:-73983067 | MS.gene98840:CDS |
| GAAAACTTGACATTTGAAGA+AGG | 0.522330 | 6.1:-73984624 | MS.gene98840:CDS |
| AATCCAACAGTTGGTGCTGA+AGG | 0.522601 | 6.1:-73982986 | MS.gene98840:CDS |
| TTTCCCCACTAGCACCAAGA+AGG | 0.526251 | 6.1:+73985279 | None:intergenic |
| GAACCTTCAGCACCAACTGT+TGG | 0.532387 | 6.1:+73982983 | None:intergenic |
| GTTGCTATCAAATACAAAGA+TGG | 0.535140 | 6.1:-73985810 | MS.gene98840:CDS |
| ACTCCCTTCTTGGTGCTAGT+GGG | 0.536638 | 6.1:-73985283 | MS.gene98840:CDS |
| ACGGAGGATCCAGTTACGTA+TGG | 0.544818 | 6.1:+73985834 | None:intergenic |
| CTCCCTTCTTGGTGCTAGTG+GGG | 0.554016 | 6.1:-73985282 | MS.gene98840:CDS |
| TTCCCCACTAGCACCAAGAA+GGG | 0.561183 | 6.1:+73985280 | None:intergenic |
| GGCCAATTCTCCGCGATGAG+TGG | 0.562260 | 6.1:-73984650 | MS.gene98840:CDS |
| GAATACATACAGAGTTCTCT+GGG | 0.564352 | 6.1:+73985977 | None:intergenic |
| GCCTTCAAGAATCCAACAGT+TGG | 0.564781 | 6.1:-73982995 | MS.gene98840:CDS |
| ATACAAAGATGGCATTCTCA+TGG | 0.571569 | 6.1:-73985799 | MS.gene98840:CDS |
| TTGATAACATGTGGGATGAT+GGG | 0.573728 | 6.1:-73984958 | MS.gene98840:CDS |
| TTCCAAGCCCAGTTGCCACA+TGG | 0.580626 | 6.1:+73984685 | None:intergenic |
| AGGTCCACAACTATTTAACT+CGG | 0.589584 | 6.1:-73984916 | MS.gene98840:CDS |
| GCAGCCTTATTGATAACATG+TGG | 0.590974 | 6.1:-73984967 | MS.gene98840:intron |
| AAGACAACCATGTGGCAACT+GGG | 0.606831 | 6.1:-73984692 | MS.gene98840:CDS |
| GAACTCTTTGGGACCTAAGG+AGG | 0.607188 | 6.1:-73984936 | MS.gene98840:CDS |
| GGCTTGGAAATCATCTTGCT+AGG | 0.608634 | 6.1:-73984671 | MS.gene98840:CDS |
| TTACTCACATGAGCTCATCA+AGG | 0.609092 | 6.1:+73985228 | None:intergenic |
| ATTCTCTTTGAAAACATACT+GGG | 0.610546 | 6.1:-73983026 | MS.gene98840:CDS |
| TTTGTATTTGATAGCAACGA+CGG | 0.611101 | 6.1:+73985815 | None:intergenic |
| TGTTCACAGCAGACCTATCA+CGG | 0.621004 | 6.1:+73984562 | None:intergenic |
| TCACCCGAGTTAAATAGTTG+TGG | 0.633695 | 6.1:+73984912 | None:intergenic |
| CGGAGGATCCAGTTACGTAT+GGG | 0.635103 | 6.1:+73985835 | None:intergenic |
| CTCATGGCTGCTGATATGGG+AGG | 0.637244 | 6.1:-73985783 | MS.gene98840:intron |
| AAGTAAGGCATACCGTGCCA+AGG | 0.647059 | 6.1:+73984813 | None:intergenic |
| GGTCCACAACTATTTAACTC+GGG | 0.657570 | 6.1:-73984915 | MS.gene98840:CDS |
| CAGCCTTATTGATAACATGT+GGG | 0.667626 | 6.1:-73984966 | MS.gene98840:CDS |
| GGGGCAGAAGTACCTTGGCA+CGG | 0.670563 | 6.1:-73984825 | MS.gene98840:intron |
| AGAACAAGTGAGTTCCACAA+TGG | 0.678967 | 6.1:+73984863 | None:intergenic |
| GCAACAAGTTCAATCCATTG+TGG | 0.696663 | 6.1:-73984877 | MS.gene98840:CDS |
| GTATTTGATAGCAACGACGG+AGG | 0.702152 | 6.1:+73985818 | None:intergenic |
| GTTCATATGGATCTACACTG+AGG | 0.793582 | 6.1:-73985343 | MS.gene98840:CDS |
| TAATTACGAAGACAACCATG+TGG | 0.799291 | 6.1:-73984700 | MS.gene98840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATATATATAGAATAA+AGG | + | chr6.1:73985436-73985455 | None:intergenic | 10.0% |
| !! | AATATATTCAGGATTTATAT+AGG | - | chr6.1:73985310-73985329 | MS.gene98840:CDS | 15.0% |
| !! | CAAAATTAATTAAATATGGA+AGG | + | chr6.1:73985025-73985044 | None:intergenic | 15.0% |
| !! | CAAATAAGTGAAATAAAAAT+GGG | - | chr6.1:73983821-73983840 | MS.gene98840:intron | 15.0% |
| !! | TCAAATAAGTGAAATAAAAA+TGG | - | chr6.1:73983820-73983839 | MS.gene98840:intron | 15.0% |
| !! | TTGAAAGATAATGTAAAATA+TGG | + | chr6.1:73984672-73984691 | None:intergenic | 15.0% |
| !!! | ATAAAATACATTTGAAATGA+AGG | + | chr6.1:73983379-73983398 | None:intergenic | 15.0% |
| !!! | ATTTATGAATATTTTTCCTT+TGG | + | chr6.1:73984640-73984659 | None:intergenic | 15.0% |
| !!! | CTTCCATATTTAATTAATTT+TGG | - | chr6.1:73985023-73985042 | MS.gene98840:intron | 15.0% |
| !!! | TTTACAGATATCTAAAATTA+CGG | - | chr6.1:73985898-73985917 | MS.gene98840:intron | 15.0% |
| !!! | TTTATGAATATTTTTCCTTT+GGG | + | chr6.1:73984639-73984658 | None:intergenic | 15.0% |
| !! | AAAGAAGTAAAAACTGAATA+GGG | - | chr6.1:73985238-73985257 | MS.gene98840:CDS | 20.0% |
| !! | AAGAACATTAATAATTGAAG+AGG | + | chr6.1:73983033-73983052 | None:intergenic | 20.0% |
| !! | AGAACATTAATAATTGAAGA+GGG | + | chr6.1:73983032-73983051 | None:intergenic | 20.0% |
| !! | ATTAATTAAATATGGAAGGA+AGG | + | chr6.1:73985021-73985040 | None:intergenic | 20.0% |
| !! | CAGCCAAAATTAATTAAATA+TGG | + | chr6.1:73985029-73985048 | None:intergenic | 20.0% |
| !! | GAAAGAAAGAAAATATATTC+AGG | - | chr6.1:73985299-73985318 | MS.gene98840:CDS | 20.0% |
| !! | TTTATACATTAAGAATTGTG+TGG | - | chr6.1:73984857-73984876 | MS.gene98840:CDS | 20.0% |
| !!! | AGTTGTAATATTTAAAGTCA+AGG | + | chr6.1:73983943-73983962 | None:intergenic | 20.0% |
| !!! | CATATTTAATTAATTTTGGC+TGG | - | chr6.1:73985027-73985046 | MS.gene98840:intron | 20.0% |
| !!! | CTTTTTTCTTAAAAAGTTAC+AGG | + | chr6.1:73983444-73983463 | None:intergenic | 20.0% |
| !!! | GTTGTAATATTTAAAGTCAA+GGG | + | chr6.1:73983942-73983961 | None:intergenic | 20.0% |
| !!! | TGATTATTTTGGATTATGAA+TGG | - | chr6.1:73984708-73984727 | MS.gene98840:CDS | 20.0% |
| !!! | TGTTTGAAATGTAGATAAAT+AGG | + | chr6.1:73983894-73983913 | None:intergenic | 20.0% |
| ! | AAACTTCGATAAGTTGTAAA+TGG | + | chr6.1:73984503-73984522 | None:intergenic | 25.0% |
| ! | AACTTCGATAAGTTGTAAAT+GGG | + | chr6.1:73984502-73984521 | None:intergenic | 25.0% |
| ! | AAGAAGTAAAAACTGAATAG+GGG | - | chr6.1:73985239-73985258 | MS.gene98840:CDS | 25.0% |
| ! | AATTATCTTTCCTTCTATTG+TGG | - | chr6.1:73983340-73983359 | MS.gene98840:intron | 25.0% |
| ! | CAAAGAAGTAAAAACTGAAT+AGG | - | chr6.1:73985237-73985256 | MS.gene98840:CDS | 25.0% |
| ! | GCAAACAAATCATTAAGTTT+AGG | + | chr6.1:73985780-73985799 | None:intergenic | 25.0% |
| ! | TGAAGTGATATACATTTGTA+TGG | - | chr6.1:73984881-73984900 | MS.gene98840:CDS | 25.0% |
| ! | TGAGAGTAAATGTCAAAATT+GGG | - | chr6.1:73985180-73985199 | MS.gene98840:intron | 25.0% |
| ! | TTAGTATTCCAAATCATTCA+TGG | + | chr6.1:73985545-73985564 | None:intergenic | 25.0% |
| ! | TTCTAACCGAAAAATTAATG+TGG | + | chr6.1:73984821-73984840 | None:intergenic | 25.0% |
| ! | TTCTATCCATCAATTATCAT+TGG | + | chr6.1:73983594-73983613 | None:intergenic | 25.0% |
| !! | AATACAATCTCCTTTTAGAT+GGG | - | chr6.1:73985473-73985492 | MS.gene98840:intron | 25.0% |
| !! | ATATCTAAAATTACGGAAGA+AGG | - | chr6.1:73985905-73985924 | MS.gene98840:intron | 25.0% |
| !! | ATTCTCTTTGAAAACATACT+GGG | - | chr6.1:73985946-73985965 | MS.gene98840:intron | 25.0% |
| !! | CTATTCAGTTTTTACTTCTT+TGG | + | chr6.1:73985239-73985258 | None:intergenic | 25.0% |
| !! | TAATACAATCTCCTTTTAGA+TGG | - | chr6.1:73985472-73985491 | MS.gene98840:intron | 25.0% |
| !! | TTTTCTTAAAAAGTTACAGG+AGG | + | chr6.1:73983441-73983460 | None:intergenic | 25.0% |
| !!! | AATTTTGACATTTACTCTCA+CGG | + | chr6.1:73985180-73985199 | None:intergenic | 25.0% |
| !!! | ATAAATGTTGTTTCCTTACA+AGG | - | chr6.1:73983474-73983493 | MS.gene98840:intron | 25.0% |
| !!! | ATTTATATAGGTCGATTTGT+TGG | - | chr6.1:73985322-73985341 | MS.gene98840:CDS | 25.0% |
| !!! | GTTCTTTTGATTCAAGTTTA+AGG | - | chr6.1:73983047-73983066 | MS.gene98840:CDS | 25.0% |
| !!! | TAAATGTTGTTTCCTTACAA+GGG | - | chr6.1:73983475-73983494 | MS.gene98840:intron | 25.0% |
| !!! | TGCTCAAGTTTTGATTATTT+TGG | - | chr6.1:73984697-73984716 | MS.gene98840:CDS | 25.0% |
| AAACACAGCAAACAAAAATC+AGG | + | chr6.1:73984220-73984239 | None:intergenic | 30.0% | |
| AACAAGTAAAATGAAGCTGA+TGG | + | chr6.1:73983868-73983887 | None:intergenic | 30.0% | |
| AACTAATTCACAGGTTCATA+TGG | - | chr6.1:73983616-73983635 | MS.gene98840:intron | 30.0% | |
| ACATTAATAATTGAAGAGGG+AGG | + | chr6.1:73983029-73983048 | None:intergenic | 30.0% | |
| ACCTTAGTAGCAGAAAATAA+AGG | - | chr6.1:73985105-73985124 | MS.gene98840:intron | 30.0% | |
| ACTTCGATAAGTTGTAAATG+GGG | + | chr6.1:73984501-73984520 | None:intergenic | 30.0% | |
| ATTAAATATGGAAGGAAGGT+AGG | + | chr6.1:73985017-73985036 | None:intergenic | 30.0% | |
| CAAAATCTAACCACAATAGA+AGG | + | chr6.1:73983353-73983372 | None:intergenic | 30.0% | |
| GAAAACTTGACATTTGAAGA+AGG | - | chr6.1:73984348-73984367 | MS.gene98840:intron | 30.0% | |
| GAGAGTAAATGTCAAAATTG+GGG | - | chr6.1:73985181-73985200 | MS.gene98840:intron | 30.0% | |
| GATAGAATGAACTAATTCAC+AGG | - | chr6.1:73983607-73983626 | MS.gene98840:intron | 30.0% | |
| GTAATGCCAATGATAATTGA+TGG | - | chr6.1:73983585-73983604 | MS.gene98840:intron | 30.0% | |
| GTGAGAGTAAATGTCAAAAT+TGG | - | chr6.1:73985179-73985198 | MS.gene98840:intron | 30.0% | |
| GTTCTATATATAGCTGATAG+TGG | - | chr6.1:73984586-73984605 | MS.gene98840:CDS | 30.0% | |
| GTTGCTATCAAATACAAAGA+TGG | - | chr6.1:73983162-73983181 | MS.gene98840:intron | 30.0% | |
| TAAAAGAGTGATCAAGAAGA+AGG | + | chr6.1:73983300-73983319 | None:intergenic | 30.0% | |
| TAACATCTGATCATGTATAC+CGG | - | chr6.1:73985730-73985749 | MS.gene98840:intron | 30.0% | |
| TTGATTATGACCCAATTAAG+CGG | - | chr6.1:73985619-73985638 | MS.gene98840:intron | 30.0% | |
| ! | AATGGGTGTGATTAGTTAAA+TGG | - | chr6.1:73983838-73983857 | MS.gene98840:intron | 30.0% |
| ! | AGGAAGCCACATTAATTTTT+CGG | - | chr6.1:73984812-73984831 | MS.gene98840:intron | 30.0% |
| ! | ATGTTTTCAAAGAGAATGGT+GGG | + | chr6.1:73985943-73985962 | None:intergenic | 30.0% |
| ! | CAGTATGTTTTCAAAGAGAA+TGG | + | chr6.1:73985947-73985966 | None:intergenic | 30.0% |
| ! | CATTCTCTTTGAAAACATAC+TGG | - | chr6.1:73985945-73985964 | MS.gene98840:intron | 30.0% |
| ! | TATGTTTTCAAAGAGAATGG+TGG | + | chr6.1:73985944-73985963 | None:intergenic | 30.0% |
| ! | TGATCACTCTTTTACTTTGT+TGG | - | chr6.1:73983306-73983325 | MS.gene98840:intron | 30.0% |
| ! | TTTGTATTTGATAGCAACGA+CGG | + | chr6.1:73983160-73983179 | None:intergenic | 30.0% |
| !! | TTGCTTATTTTCTTTGCTCT+AGG | - | chr6.1:73983112-73983131 | MS.gene98840:intron | 30.0% |
| !!! | TCCTTTATTTTCTGCTACTA+AGG | + | chr6.1:73985109-73985128 | None:intergenic | 30.0% |
| AACACTGTCTCATAATTCAC+AGG | + | chr6.1:73985707-73985726 | None:intergenic | 35.0% | |
| AACATCTGATCATGTATACC+GGG | - | chr6.1:73985731-73985750 | MS.gene98840:intron | 35.0% | |
| AACTTTCGTATCAGAGTCAT+TGG | - | chr6.1:73985496-73985515 | MS.gene98840:intron | 35.0% | |
| AAGTAAAAACTGAATAGGGG+TGG | - | chr6.1:73985242-73985261 | MS.gene98840:CDS | 35.0% | |
| ACAGCAAACAAAAATCAGGT+AGG | + | chr6.1:73984216-73984235 | None:intergenic | 35.0% | |
| ACATGTTATCAATAAGGCTG+CGG | + | chr6.1:73984006-73984025 | None:intergenic | 35.0% | |
| ACGCAGCAAGAAAATGAAAT+AGG | + | chr6.1:73984450-73984469 | None:intergenic | 35.0% | |
| AGAATACATACAGAGTTCTC+TGG | + | chr6.1:73982999-73983018 | None:intergenic | 35.0% | |
| AGGTAATAACACCTAGATGA+TGG | - | chr6.1:73985674-73985693 | MS.gene98840:intron | 35.0% | |
| AGGTCCACAACTATTTAACT+CGG | - | chr6.1:73984056-73984075 | MS.gene98840:intron | 35.0% | |
| AGTAAAAACTGAATAGGGGT+GGG | - | chr6.1:73985243-73985262 | MS.gene98840:CDS | 35.0% | |
| ATAAGTTGTAAATGGGGAGA+GGG | + | chr6.1:73984495-73984514 | None:intergenic | 35.0% | |
| ATACAAAGATGGCATTCTCA+TGG | - | chr6.1:73983173-73983192 | MS.gene98840:intron | 35.0% | |
| ATTGACCACCTAAGAAATGA+AGG | - | chr6.1:73985078-73985097 | MS.gene98840:intron | 35.0% | |
| CATCCCACATGTTATCAATA+AGG | + | chr6.1:73984012-73984031 | None:intergenic | 35.0% | |
| CATGCTAGTTAGTTGATCAA+AGG | + | chr6.1:73984616-73984635 | None:intergenic | 35.0% | |
| CTGAATGACAAGACAAAGTA+AGG | + | chr6.1:73984177-73984196 | None:intergenic | 35.0% | |
| GAATACATACAGAGTTCTCT+GGG | + | chr6.1:73982998-73983017 | None:intergenic | 35.0% | |
| GCTTACTACCATGAATGATT+TGG | - | chr6.1:73985534-73985553 | MS.gene98840:intron | 35.0% | |
| TAACTCGGGTGATGTATAAT+AGG | - | chr6.1:73984071-73984090 | MS.gene98840:intron | 35.0% | |
| TAATTACGAAGACAACCATG+TGG | - | chr6.1:73984272-73984291 | MS.gene98840:intron | 35.0% | |
| TACGAAAGTTCCCATCTAAA+AGG | + | chr6.1:73985486-73985505 | None:intergenic | 35.0% | |
| TATTCTATGCCAAGCTATGT+TGG | + | chr6.1:73985059-73985078 | None:intergenic | 35.0% | |
| TGTGTTTGTGTATCTTATCC+AGG | - | chr6.1:73984233-73984252 | MS.gene98840:intron | 35.0% | |
| TTAAAAAGTTACAGGAGGAC+TGG | + | chr6.1:73983436-73983455 | None:intergenic | 35.0% | |
| ! | ATTGATAACATGTGGGATGA+TGG | - | chr6.1:73984013-73984032 | MS.gene98840:intron | 35.0% |
| ! | TTGATAACATGTGGGATGAT+GGG | - | chr6.1:73984014-73984033 | MS.gene98840:intron | 35.0% |
| !! | CAGAAGAAAAGCACTAAAAC+TGG | + | chr6.1:73983501-73983520 | None:intergenic | 35.0% |
| !! | CAGCCTTATTGATAACATGT+GGG | - | chr6.1:73984006-73984025 | MS.gene98840:intron | 35.0% |
| !! | GTTCTTGGTGGTGTTAAAAA+GGG | - | chr6.1:73984127-73984146 | MS.gene98840:intron | 35.0% |
| !! | TGGAATTGCTTTCACTTTTC+TGG | - | chr6.1:73985355-73985374 | MS.gene98840:intron | 35.0% |
| !! | TGTTCTTGGTGGTGTTAAAA+AGG | - | chr6.1:73984126-73984145 | MS.gene98840:intron | 35.0% |
| !! | TTCTTGGTGGTGTTAAAAAG+GGG | - | chr6.1:73984128-73984147 | MS.gene98840:intron | 35.0% |
| AAATAGTTGTGGACCTCCTT+AGG | + | chr6.1:73984052-73984071 | None:intergenic | 40.0% | |
| AATTAAGCGGCCTCAAAATC+TGG | - | chr6.1:73985632-73985651 | MS.gene98840:intron | 40.0% | |
| ACCAACTGTTGGATTCTTGA+AGG | + | chr6.1:73985981-73986000 | None:intergenic | 40.0% | |
| AGAACAAGTGAGTTCCACAA+TGG | + | chr6.1:73984112-73984131 | None:intergenic | 40.0% | |
| AGGAAACATCCTCATAACTC+TGG | + | chr6.1:73984997-73985016 | None:intergenic | 40.0% | |
| AGGTAACATGTGATGTGAGT+TGG | + | chr6.1:73984940-73984959 | None:intergenic | 40.0% | |
| AGGTACAGCCTTCATTTCTT+AGG | + | chr6.1:73985089-73985108 | None:intergenic | 40.0% | |
| AGTTAACAGAGAGAGAGCTA+TGG | + | chr6.1:73983248-73983267 | None:intergenic | 40.0% | |
| ATAATTGAAGAGGGAGGAAG+AGG | + | chr6.1:73983023-73983042 | None:intergenic | 40.0% | |
| ATTCTCATGGCTGCTGATAT+GGG | - | chr6.1:73983186-73983205 | MS.gene98840:intron | 40.0% | |
| CTCTGGACTTAAGAGTCATA+AGG | + | chr6.1:73984980-73984999 | None:intergenic | 40.0% | |
| CTCTTAAGTCCAGAGTTATG+AGG | - | chr6.1:73984985-73985004 | MS.gene98840:intron | 40.0% | |
| CTTATCCAGGTTAGCATGAT+TGG | - | chr6.1:73984246-73984265 | MS.gene98840:intron | 40.0% | |
| GAAAACATACTGGGAGTTCT+CGG | - | chr6.1:73985955-73985974 | MS.gene98840:intron | 40.0% | |
| GATAAGTTGTAAATGGGGAG+AGG | + | chr6.1:73984496-73984515 | None:intergenic | 40.0% | |
| GCAACAAGTTCAATCCATTG+TGG | - | chr6.1:73984095-73984114 | MS.gene98840:intron | 40.0% | |
| GGAGGGAAAGTTATTTGAGA+TGG | - | chr6.1:73985277-73985296 | MS.gene98840:CDS | 40.0% | |
| GGTCCACAACTATTTAACTC+GGG | - | chr6.1:73984057-73984076 | MS.gene98840:intron | 40.0% | |
| GTTCATATGGATCTACACTG+AGG | - | chr6.1:73983629-73983648 | MS.gene98840:intron | 40.0% | |
| TAACACCAATCATGCTAACC+TGG | + | chr6.1:73984254-73984273 | None:intergenic | 40.0% | |
| TAATTGAAGAGGGAGGAAGA+GGG | + | chr6.1:73983022-73983041 | None:intergenic | 40.0% | |
| TACAGCCTTCATTTCTTAGG+TGG | + | chr6.1:73985086-73985105 | None:intergenic | 40.0% | |
| TCACCCGAGTTAAATAGTTG+TGG | + | chr6.1:73984063-73984082 | None:intergenic | 40.0% | |
| TGGGGAAATAAGTGACTTTC+AGG | - | chr6.1:73983708-73983727 | MS.gene98840:intron | 40.0% | |
| TGTACATGCTGTCACTGTTA+AGG | - | chr6.1:73984792-73984811 | MS.gene98840:intron | 40.0% | |
| TTACTCACATGAGCTCATCA+AGG | + | chr6.1:73983747-73983766 | None:intergenic | 40.0% | |
| TTGTGGAACTCACTTGTTCT+TGG | - | chr6.1:73984112-73984131 | MS.gene98840:intron | 40.0% | |
| ! | AGTTTTCATTCCACTCATCG+CGG | + | chr6.1:73984335-73984354 | None:intergenic | 40.0% |
| ! | ATCATGCCAGTGTATTGATG+TGG | + | chr6.1:73985587-73985606 | None:intergenic | 40.0% |
| ! | TGTCAAAATTGGGGCTTTGA+AGG | - | chr6.1:73985190-73985209 | MS.gene98840:intron | 40.0% |
| ! | TTAAGTTTAGGACGCAGTGT+AGG | + | chr6.1:73985768-73985787 | None:intergenic | 40.0% |
| !! | ATAGGTCGATTTGTTGGCAT+GGG | - | chr6.1:73985328-73985347 | MS.gene98840:CDS | 40.0% |
| !! | GCAGCCTTATTGATAACATG+TGG | - | chr6.1:73984005-73984024 | MS.gene98840:intron | 40.0% |
| !! | GTATCAGAGTCATTGGTTTG+TGG | - | chr6.1:73985503-73985522 | MS.gene98840:intron | 40.0% |
| !! | TATAGGTCGATTTGTTGGCA+TGG | - | chr6.1:73985327-73985346 | MS.gene98840:CDS | 40.0% |
| !!! | ACTTTTCTGGCTTTGCTTTG+GGG | - | chr6.1:73985368-73985387 | MS.gene98840:intron | 40.0% |
| !!! | AGATTTTGAGGCCGCTTAAT+TGG | + | chr6.1:73985633-73985652 | None:intergenic | 40.0% |
| !!! | CACTTTTCTGGCTTTGCTTT+GGG | - | chr6.1:73985367-73985386 | MS.gene98840:intron | 40.0% |
| !!! | GATTTTGAGGCCGCTTAATT+GGG | + | chr6.1:73985632-73985651 | None:intergenic | 40.0% |
| !!! | TCACTTTTCTGGCTTTGCTT+TGG | - | chr6.1:73985366-73985385 | MS.gene98840:intron | 40.0% |
| AAGACAACCATGTGGCAACT+GGG | - | chr6.1:73984280-73984299 | MS.gene98840:intron | 45.0% | |
| AAGTCAAGGGTGAAATGCAC+AGG | + | chr6.1:73983929-73983948 | None:intergenic | 45.0% | |
| ACGAATAAAACTCTCAGCCG+AGG | + | chr6.1:73985412-73985431 | None:intergenic | 45.0% | |
| AGGATGTCACGTTCAGATCT+AGG | + | chr6.1:73984960-73984979 | None:intergenic | 45.0% | |
| CAACTAACTAGCATGCCCAA+AGG | - | chr6.1:73984621-73984640 | MS.gene98840:CDS | 45.0% | |
| CACTAAAACTGGCCCTTGTA+AGG | + | chr6.1:73983490-73983509 | None:intergenic | 45.0% | |
| CATTCTCATGGCTGCTGATA+TGG | - | chr6.1:73983185-73983204 | MS.gene98840:intron | 45.0% | |
| CTCAAATAACTTTCCCTCCG+TGG | + | chr6.1:73985276-73985295 | None:intergenic | 45.0% | |
| GATGTGCCACATCAATACAC+TGG | - | chr6.1:73985578-73985597 | MS.gene98840:intron | 45.0% | |
| GCCTTCAAGAATCCAACAGT+TGG | - | chr6.1:73985977-73985996 | MS.gene98840:intron | 45.0% | |
| GGCTTGGAAATCATCTTGCT+AGG | - | chr6.1:73984301-73984320 | MS.gene98840:intron | 45.0% | |
| GTCTGCTGTGAACAAGATTC+AGG | - | chr6.1:73984419-73984438 | MS.gene98840:intron | 45.0% | |
| GTGTAGGCTCATAGTTATCC+CGG | + | chr6.1:73985752-73985771 | None:intergenic | 45.0% | |
| TCTAGGTACCCATACGTAAC+TGG | - | chr6.1:73983129-73983148 | MS.gene98840:intron | 45.0% | |
| TGGAACTCACTTGTTCTTGG+TGG | - | chr6.1:73984115-73984134 | MS.gene98840:intron | 45.0% | |
| TGGATCAGACCAACATAGCT+TGG | - | chr6.1:73985047-73985066 | MS.gene98840:intron | 45.0% | |
| TGTTCACAGCAGACCTATCA+CGG | + | chr6.1:73984413-73984432 | None:intergenic | 45.0% | |
| ! | GAGTGCTTTTGTACCGTGAT+AGG | - | chr6.1:73984397-73984416 | MS.gene98840:intron | 45.0% |
| ! | GTATTTGATAGCAACGACGG+AGG | + | chr6.1:73983157-73983176 | None:intergenic | 45.0% |
| ! | GTTGAGCGTTTGAAGCCTAT+TGG | - | chr6.1:73983661-73983680 | MS.gene98840:intron | 45.0% |
| ! | TAGCCACTGACCAGATTTTG+AGG | + | chr6.1:73985645-73985664 | None:intergenic | 45.0% |
| !! | AAAAAGGGGCAGAAGTACCT+TGG | - | chr6.1:73984142-73984161 | MS.gene98840:intron | 45.0% |
| !! | AATCCAACAGTTGGTGCTGA+AGG | - | chr6.1:73985986-73986005 | MS.gene98840:intron | 45.0% |
| !! | AGAAGGGAGTGCTTTCCAAT+AGG | + | chr6.1:73983679-73983698 | None:intergenic | 45.0% |
| !! | ATTGGAAAGCACTCCCTTCT+TGG | - | chr6.1:73983679-73983698 | MS.gene98840:intron | 45.0% |
| !! | TGGGATGATGGGAACTCTTT+GGG | - | chr6.1:73984025-73984044 | MS.gene98840:intron | 45.0% |
| AAGTAAGGCATACCGTGCCA+AGG | + | chr6.1:73984162-73984181 | None:intergenic | 50.0% | |
| ACGGAGGATCCAGTTACGTA+TGG | + | chr6.1:73983141-73983160 | None:intergenic | 50.0% | |
| AGTTGTAAATGGGGAGAGGG+AGG | + | chr6.1:73984492-73984511 | None:intergenic | 50.0% | |
| CAGGCAAGCAACCATCATCT+AGG | + | chr6.1:73985688-73985707 | None:intergenic | 50.0% | |
| CAGGTAGGTACCTCAACTGT+CGG | + | chr6.1:73984201-73984220 | None:intergenic | 50.0% | |
| CGGAGGATCCAGTTACGTAT+GGG | + | chr6.1:73983140-73983159 | None:intergenic | 50.0% | |
| GAACCTTCAGCACCAACTGT+TGG | + | chr6.1:73985992-73986011 | None:intergenic | 50.0% | |
| GAAGACAACCATGTGGCAAC+TGG | - | chr6.1:73984279-73984298 | MS.gene98840:intron | 50.0% | |
| GTCATTCAGTCCGACAGTTG+AGG | - | chr6.1:73984188-73984207 | MS.gene98840:intron | 50.0% | |
| TTCCACTCATCGCGGAGAAT+TGG | + | chr6.1:73984327-73984346 | None:intergenic | 50.0% | |
| TTCCCCACTAGCACCAAGAA+GGG | + | chr6.1:73983695-73983714 | None:intergenic | 50.0% | |
| TTTCCCCACTAGCACCAAGA+AGG | + | chr6.1:73983696-73983715 | None:intergenic | 50.0% | |
| ! | GTCAGTGGCTAGTTACTGGA+AGG | - | chr6.1:73985654-73985673 | MS.gene98840:intron | 50.0% |
| ! | TCTGGTCAGTGGCTAGTTAC+TGG | - | chr6.1:73985650-73985669 | MS.gene98840:intron | 50.0% |
| !! | ACTCCCTTCTTGGTGCTAGT+GGG | - | chr6.1:73983689-73983708 | MS.gene98840:intron | 50.0% |
| !! | CAGTTGGTGCTGAAGGTTCA+TGG | - | chr6.1:73985993-73986012 | MS.gene98840:CDS | 50.0% |
| !! | GAACTCTTTGGGACCTAAGG+AGG | - | chr6.1:73984036-73984055 | MS.gene98840:intron | 50.0% |
| !! | GATTTGTTGGCATGGGAGTC+TGG | - | chr6.1:73985335-73985354 | MS.gene98840:CDS | 50.0% |
| !! | GTGGGATGATGGGAACTCTT+TGG | - | chr6.1:73984024-73984043 | MS.gene98840:intron | 50.0% |
| !! | TGGGAACTCTTTGGGACCTA+AGG | - | chr6.1:73984033-73984052 | MS.gene98840:intron | 50.0% |
| AACCATGTGGCAACTGGGCT+TGG | - | chr6.1:73984285-73984304 | MS.gene98840:intron | 55.0% | |
| CGGCCTCAAAATCTGGTCAG+TGG | - | chr6.1:73985639-73985658 | MS.gene98840:intron | 55.0% | |
| CTCATGGCTGCTGATATGGG+AGG | - | chr6.1:73983189-73983208 | MS.gene98840:intron | 55.0% | |
| TCAGCCGAGGAGAAACAGTC+TGG | + | chr6.1:73985399-73985418 | None:intergenic | 55.0% | |
| TTCCAAGCCCAGTTGCCACA+TGG | + | chr6.1:73984290-73984309 | None:intergenic | 55.0% | |
| ! | CACGCCAGACTGTTTCTCCT+CGG | - | chr6.1:73985392-73985411 | MS.gene98840:intron | 55.0% |
| !! | CACTCCCTTCTTGGTGCTAG+TGG | - | chr6.1:73983688-73983707 | MS.gene98840:intron | 55.0% |
| !! | CTCCCTTCTTGGTGCTAGTG+GGG | - | chr6.1:73983690-73983709 | MS.gene98840:intron | 55.0% |
| CGAGGAGAAACAGTCTGGCG+TGG | + | chr6.1:73985394-73985413 | None:intergenic | 60.0% | |
| GGCCAATTCTCCGCGATGAG+TGG | - | chr6.1:73984322-73984341 | MS.gene98840:intron | 60.0% | |
| TAGGGGTGGGCATGCATCCA+CGG | - | chr6.1:73985256-73985275 | MS.gene98840:CDS | 60.0% | |
| !! | GGGGCAGAAGTACCTTGGCA+CGG | - | chr6.1:73984147-73984166 | MS.gene98840:intron | 60.0% |
| GGTGGGCATGCATCCACGGA+GGG | - | chr6.1:73985260-73985279 | MS.gene98840:CDS | 65.0% | |
| GGGTGGGCATGCATCCACGG+AGG | - | chr6.1:73985259-73985278 | MS.gene98840:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 73982976 | 73986018 | 73982976 | ID=MS.gene98840 |
| chr6.1 | mRNA | 73982976 | 73986018 | 73982976 | ID=MS.gene98840.t1;Parent=MS.gene98840 |
| chr6.1 | exon | 73985987 | 73986018 | 73985987 | ID=MS.gene98840.t1.exon1;Parent=MS.gene98840.t1 |
| chr6.1 | CDS | 73985987 | 73986018 | 73985987 | ID=cds.MS.gene98840.t1;Parent=MS.gene98840.t1 |
| chr6.1 | exon | 73985784 | 73985860 | 73985784 | ID=MS.gene98840.t1.exon2;Parent=MS.gene98840.t1 |
| chr6.1 | CDS | 73985784 | 73985860 | 73985784 | ID=cds.MS.gene98840.t1;Parent=MS.gene98840.t1 |
| chr6.1 | exon | 73985236 | 73985365 | 73985236 | ID=MS.gene98840.t1.exon3;Parent=MS.gene98840.t1 |
| chr6.1 | CDS | 73985236 | 73985365 | 73985236 | ID=cds.MS.gene98840.t1;Parent=MS.gene98840.t1 |
| chr6.1 | exon | 73984826 | 73984985 | 73984826 | ID=MS.gene98840.t1.exon4;Parent=MS.gene98840.t1 |
| chr6.1 | CDS | 73984826 | 73984985 | 73984826 | ID=cds.MS.gene98840.t1;Parent=MS.gene98840.t1 |
| chr6.1 | exon | 73984554 | 73984739 | 73984554 | ID=MS.gene98840.t1.exon5;Parent=MS.gene98840.t1 |
| chr6.1 | CDS | 73984554 | 73984739 | 73984554 | ID=cds.MS.gene98840.t1;Parent=MS.gene98840.t1 |
| chr6.1 | exon | 73982976 | 73983089 | 73982976 | ID=MS.gene98840.t1.exon6;Parent=MS.gene98840.t1 |
| chr6.1 | CDS | 73982976 | 73983089 | 73982976 | ID=cds.MS.gene98840.t1;Parent=MS.gene98840.t1 |
| Gene Sequence |
| Protein sequence |
