AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016623.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016623.01.T01 MTR_3g092140 98.087 366 6 1 1 366 1 365 0.0 736
MsG0380016623.01.T01 MTR_3g092140 63.636 66 12 1 311 364 445 510 4.37e-15 77.0
MsG0380016623.01.T01 MTR_3g449790 40.979 327 179 7 35 352 33 354 1.27e-77 243
MsG0380016623.01.T01 MTR_3g449790 40.367 327 175 7 35 352 33 348 5.02e-77 242
MsG0380016623.01.T01 MTR_7g114980 28.614 339 194 12 47 366 23 332 7.30e-26 107
MsG0380016623.01.T01 MTR_7g114990 26.786 336 211 12 33 352 4 320 7.34e-26 107
MsG0380016623.01.T01 MTR_7g115010 29.355 310 176 13 47 346 21 297 5.35e-25 104
MsG0380016623.01.T01 MTR_1g102750 27.761 335 197 14 36 350 4 313 1.23e-24 103
MsG0380016623.01.T01 MTR_7g021850 28.523 298 170 12 72 350 38 311 2.09e-24 102
MsG0380016623.01.T01 MTR_7g021680 27.703 296 174 12 72 350 38 310 8.37e-22 95.5
MsG0380016623.01.T01 MTR_7g021820 27.703 296 174 12 72 350 38 310 8.37e-22 95.5
MsG0380016623.01.T01 MTR_7g114970 25.526 333 201 14 39 350 9 315 6.12e-21 93.2
MsG0380016623.01.T01 MTR_7g114980 28.328 293 168 11 47 320 23 292 1.20e-19 88.6
MsG0380016623.01.T01 MTR_1g102750 27.869 305 175 14 36 320 4 283 2.88e-19 87.8
MsG0380016623.01.T01 MTR_6g073110 25.424 295 171 8 72 351 34 294 1.08e-17 83.2
MsG0380016623.01.T01 MTR_1g042730 25.278 360 201 12 16 334 57 389 3.13e-17 83.2
MsG0380016623.01.T01 MTR_8g088160 29.963 267 140 11 45 278 49 301 2.48e-16 79.3
MsG0380016623.01.T01 MTR_4g072320 25.676 296 165 10 74 351 30 288 2.68e-16 79.3
MsG0380016623.01.T01 MTR_7g114970 25.083 303 180 14 39 320 9 285 9.62e-15 74.3
MsG0380016623.01.T01 MTR_7g114970 24.834 302 180 14 39 319 9 284 6.10e-14 72.0
MsG0380016623.01.T01 MTR_4g072350 23.906 297 171 9 73 351 35 294 8.01e-14 72.0
MsG0380016623.01.T01 MTR_7g114970 25.000 224 144 8 138 350 11 221 8.17e-14 70.9
MsG0380016623.01.T01 MTR_7g114970 26.667 180 111 6 182 350 4 173 6.50e-13 67.4
MsG0380016623.01.T01 MTR_4g021350 29.570 186 101 6 177 362 138 293 1.18e-12 68.6
MsG0380016623.01.T01 MTR_7g070500 23.404 329 182 9 46 358 22 296 1.37e-12 68.2
MsG0380016623.01.T01 MTR_4g021350 30.508 177 96 5 177 353 138 287 1.48e-12 67.8
MsG0380016623.01.T01 MTR_7g070500 23.220 323 180 8 46 352 22 292 1.54e-12 68.2
MsG0380016623.01.T01 MTR_3g083130 23.448 290 168 10 80 352 45 297 3.24e-12 67.0
MsG0380016623.01.T01 MTR_0374s0050 23.478 345 193 12 26 351 5 297 6.35e-12 66.2
MsG0380016623.01.T01 MTR_2g085125 23.577 246 159 8 82 311 91 323 1.75e-11 65.5
MsG0380016623.01.T01 MTR_4g072060 23.509 285 164 9 80 343 33 284 2.92e-11 64.3
MsG0380016623.01.T01 MTR_4g092750 24.917 301 183 13 45 333 11 280 3.45e-11 63.9
MsG0380016623.01.T01 MTR_8g070095 24.198 343 190 15 47 369 16 308 5.12e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016623.01.T01 AT5G53580 74.114 367 89 3 1 365 3 365 0.0 571
MsG0380016623.01.T01 AT1G06690 39.233 339 180 8 29 352 38 365 5.31e-77 242
MsG0380016623.01.T01 AT1G60680 27.628 333 198 14 38 351 8 316 3.68e-23 99.4
MsG0380016623.01.T01 AT1G60710 28.614 332 195 15 38 351 8 315 7.08e-23 98.6
MsG0380016623.01.T01 AT1G10810 28.440 327 194 16 38 347 8 311 1.54e-21 94.7
MsG0380016623.01.T01 AT1G60750 27.273 330 196 14 33 351 4 300 3.15e-21 93.6
MsG0380016623.01.T01 AT1G04690 27.273 341 209 15 36 356 2 323 3.62e-21 93.6
MsG0380016623.01.T01 AT1G60690 26.923 338 201 15 34 351 4 315 3.12e-20 91.3
MsG0380016623.01.T01 AT1G60730 26.807 332 201 15 38 351 8 315 2.16e-19 88.6
MsG0380016623.01.T01 AT1G04420 25.641 312 169 13 5 266 9 307 9.07e-15 75.5
MsG0380016623.01.T01 AT1G10810 27.826 230 137 10 38 259 8 216 2.12e-14 72.8
MsG0380016623.01.T01 AT2G27680 27.500 240 154 9 39 273 48 272 3.39e-13 70.9
MsG0380016623.01.T01 AT2G37770 24.092 303 181 10 80 370 38 303 3.44e-13 70.1
MsG0380016623.01.T01 AT2G37760 23.510 302 183 11 77 365 31 297 7.62e-13 68.9
MsG0380016623.01.T01 AT2G37760 23.510 302 183 11 77 365 31 297 7.62e-13 68.9
MsG0380016623.01.T01 AT2G37760 23.958 288 171 11 77 351 31 283 3.06e-12 67.0
MsG0380016623.01.T01 AT2G37760 23.958 288 171 11 77 351 31 283 3.11e-12 67.0
MsG0380016623.01.T01 AT2G37760 23.958 288 171 11 77 351 31 283 3.11e-12 67.0
MsG0380016623.01.T01 AT2G37760 23.438 256 158 8 121 365 23 251 2.40e-11 63.9
MsG0380016623.01.T01 AT2G37760 23.438 256 158 8 121 365 23 251 2.40e-11 63.9
MsG0380016623.01.T01 AT2G21250 22.109 294 157 9 80 343 33 284 3.11e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTTGAGCTTCTGGTTT+TGG 0.082289 3:+85826339 None:intergenic
CATGGGGTAATCAGCTTCTT+TGG 0.155060 3:-85826277 MsG0380016623.01.T01:CDS
ATGGGGTAATCAGCTTCTTT+GGG 0.218078 3:-85826276 MsG0380016623.01.T01:CDS
AACACAAGCAGAGGAAAATT+TGG 0.222359 3:-85823018 MsG0380016623.01.T01:CDS
TATGGTACTGGAAGGTTTAA+TGG 0.252604 3:-85826164 MsG0380016623.01.T01:CDS
GAGGCCCCATCTTGAGCTTC+TGG 0.254268 3:+85826333 None:intergenic
CCTTGGTCCAGTTGGAAGTT+TGG 0.261270 3:+85824435 None:intergenic
TTTGATACTGCTGATTCTTA+TGG 0.261312 3:-85826182 MsG0380016623.01.T01:CDS
ATGCACTTCCTCAGAGAAAA+AGG 0.266564 3:-85825590 MsG0380016623.01.T01:intron
TTATCCAGTTTATCAATTAT+AGG 0.288601 3:-85822886 None:intergenic
CTAGGACTTGGAATGCTTAC+TGG 0.291744 3:-85824472 MsG0380016623.01.T01:CDS
TTGGGGCTATCAAGAATCTA+TGG 0.317047 3:-85826258 MsG0380016623.01.T01:CDS
AGGATGCAGATTGAGCAAAT+TGG 0.320844 3:-85825308 MsG0380016623.01.T01:CDS
CTGGCCTATAATTGATAAAC+TGG 0.327271 3:+85822882 None:intergenic
CAAGAGTATATGTGATTCTC+TGG 0.332996 3:-85824521 MsG0380016623.01.T01:CDS
CTATTTAAGCAAATACTTCC+AGG 0.333869 3:-85824297 MsG0380016623.01.T01:CDS
GGTCAGAGTGAGAAACTTCT+TGG 0.342488 3:-85826143 MsG0380016623.01.T01:CDS
AGAGGAAAATTTGGGTGCTC+TGG 0.361866 3:-85823009 MsG0380016623.01.T01:CDS
GGCAGTTTGTCGATGCTTGC+AGG 0.365238 3:-85825504 MsG0380016623.01.T01:intron
AGTGTGTCTCCAATGGGTTT+TGG 0.366328 3:-85826308 MsG0380016623.01.T01:CDS
GCCTCTCAGTGTGTCTCCAA+TGG 0.369900 3:-85826315 MsG0380016623.01.T01:CDS
AACATAACACAAATCAGTTT+TGG 0.370036 3:+85826480 None:intergenic
ATTGACTTGACTCCAGGAAT+TGG 0.370976 3:+85823041 None:intergenic
TTATCCATGGCGCCTTACAC+CGG 0.374534 3:-85825527 MsG0380016623.01.T01:CDS
TGTATCTTCAAAAGCTGCTT+TGG 0.383259 3:+85825006 None:intergenic
TATGTCAGGTTGCAATAAAT+TGG 0.388740 3:-85823085 MsG0380016623.01.T01:intron
TCTCTCAGGGAACTCAATAA+AGG 0.394660 3:+85824267 None:intergenic
GCTGTTGGAGTAAGTAATTA+TGG 0.402781 3:-85825030 MsG0380016623.01.T01:CDS
AGCTCTTTGGGATGGTTTAG+TGG 0.402880 3:-85825234 MsG0380016623.01.T01:CDS
TTGCAATCACAATTTCATTC+CGG 0.403716 3:+85825563 None:intergenic
CCTCTCAGTGTGTCTCCAAT+GGG 0.426743 3:-85826314 MsG0380016623.01.T01:CDS
CTTTCAGGGCATCACTAGAT+AGG 0.427874 3:-85825328 MsG0380016623.01.T01:intron
AAAGGTACAATTCCAATTCC+TGG 0.430013 3:-85823053 MsG0380016623.01.T01:CDS
GGATGCAGATTGAGCAAATT+GGG 0.430878 3:-85825307 MsG0380016623.01.T01:CDS
TATCCATGGCGCCTTACACC+GGG 0.443229 3:-85825526 MsG0380016623.01.T01:CDS
CGACAAACTGCCCCGGTGTA+AGG 0.445202 3:+85825515 None:intergenic
CAAAGAGCTAATTCTTGAAA+AGG 0.445627 3:+85825248 None:intergenic
TTTAGTGGCAATGTATGATA+AGG 0.450190 3:-85825219 MsG0380016623.01.T01:intron
ACACAAGCAGAGGAAAATTT+GGG 0.461452 3:-85823017 MsG0380016623.01.T01:CDS
CAACTGAAGTAGCTCGTTTG+AGG 0.463411 3:+85822974 None:intergenic
GCTTATAGTCCTCTAGGACT+TGG 0.463947 3:-85824484 MsG0380016623.01.T01:CDS
CAAAACCAGAAGCTCAAGAT+GGG 0.467300 3:-85826338 MsG0380016623.01.T01:CDS
CAAAATTTGCTGCTTATCCA+TGG 0.468933 3:-85825540 MsG0380016623.01.T01:CDS
ACTGCTGATTCTTATGGTAC+TGG 0.471003 3:-85826176 MsG0380016623.01.T01:CDS
TGTGTTATTGACTTGACTCC+AGG 0.471797 3:+85823035 None:intergenic
CAGGGTTTAGTTCAAGCTGT+TGG 0.471881 3:-85825045 MsG0380016623.01.T01:CDS
CTTTCAAATTCCCTTCCCTA+TGG 0.474412 3:-85826373 MsG0380016623.01.T01:CDS
TCAGCATCCAAACTTCCAAC+TGG 0.478271 3:-85824442 MsG0380016623.01.T01:CDS
CCAAAACCAGAAGCTCAAGA+TGG 0.478838 3:-85826339 MsG0380016623.01.T01:CDS
CTCAATAAAGGATCCAGTCC+TGG 0.487530 3:+85824279 None:intergenic
CAGCACAGCAATCGCCTCGC+AGG 0.488464 3:-85822944 MsG0380016623.01.T01:CDS
GAGGAAAATTTGGGTGCTCT+GGG 0.495873 3:-85823008 MsG0380016623.01.T01:CDS
CTCAAACGAGCTACTTCAGT+TGG 0.502646 3:-85822973 MsG0380016623.01.T01:CDS
TTTGGGTGGATGATGGCCAT+AGG 0.506984 3:+85826357 None:intergenic
TAAGCAAATACTTCCAGGAC+TGG 0.510322 3:-85824292 MsG0380016623.01.T01:CDS
AAAATTTGGGTGCTCTGGGT+TGG 0.513121 3:-85823004 MsG0380016623.01.T01:CDS
GTAATTGCTTATAGTCCTCT+AGG 0.521768 3:-85824490 MsG0380016623.01.T01:CDS
TTTATTTGCAATATCTCTCA+GGG 0.524302 3:+85824254 None:intergenic
TTTGAAAGGAAACGATGGTA+AGG 0.524982 3:+85826388 None:intergenic
TAACTGTTGTTGAAACATCA+TGG 0.526288 3:+85826530 None:intergenic
TAGGACTTGGAATGCTTACT+GGG 0.528436 3:-85824471 MsG0380016623.01.T01:CDS
GTCAGAGTGAGAAACTTCTT+GGG 0.529492 3:-85826142 MsG0380016623.01.T01:CDS
TGGGGTAATCAGCTTCTTTG+GGG 0.531621 3:-85826275 MsG0380016623.01.T01:CDS
GTGGATGATGGCCATAGGGA+AGG 0.533632 3:+85826362 None:intergenic
TTGGGTGGATGATGGCCATA+GGG 0.533850 3:+85826358 None:intergenic
TTTAACATGGCTGTTGAGAA+TGG 0.534752 3:-85826215 MsG0380016623.01.T01:CDS
TGGATGATGGCCATAGGGAA+GGG 0.537699 3:+85826363 None:intergenic
CAAGAATTAGCTCTTTGGGA+TGG 0.548031 3:-85825242 MsG0380016623.01.T01:CDS
TTGGGATAGGACAACTGCAT+TGG 0.550671 3:-85825289 MsG0380016623.01.T01:CDS
TTGAAAGGAAACGATGGTAA+GGG 0.554712 3:+85826389 None:intergenic
CAGATTGAGCAAATTGGGAT+AGG 0.555313 3:-85825302 MsG0380016623.01.T01:CDS
TGCCCCGGTGTAAGGCGCCA+TGG 0.557026 3:+85825523 None:intergenic
TGAAAGGAAACGATGGTAAG+GGG 0.563502 3:+85826390 None:intergenic
CTGATTCTTATGGTACTGGA+AGG 0.564524 3:-85826172 MsG0380016623.01.T01:CDS
AAACGAGCTACTTCAGTTGG+AGG 0.564890 3:-85822970 MsG0380016623.01.T01:CDS
GCCCAAGTTCCAAAACCCAT+TGG 0.565398 3:+85826299 None:intergenic
TCAACACACCTTGGTCCAGT+TGG 0.576474 3:+85824427 None:intergenic
CATAGGGAAGGGAATTTGAA+AGG 0.580453 3:+85826374 None:intergenic
AACTGGATAACATGTATACC+TGG 0.583970 3:+85822899 None:intergenic
TCTACCTGGGCTGAGCATAA+CGG 0.585242 3:+85824958 None:intergenic
CAAGCATCGACAAACTGCCC+CGG 0.589208 3:+85825508 None:intergenic
ATAAATTGGTGCATATGCAA+AGG 0.597596 3:-85823071 MsG0380016623.01.T01:CDS
AAGACGCAAAACCATGTCAC+AGG 0.598290 3:-85824232 MsG0380016623.01.T01:intron
CAAGTCAATAACACAAGCAG+AGG 0.602257 3:-85823027 MsG0380016623.01.T01:CDS
AAGAGTATATGTGATTCTCT+GGG 0.616987 3:-85824520 MsG0380016623.01.T01:CDS
GGGAATTTGAAAGGAAACGA+TGG 0.617876 3:+85826383 None:intergenic
CCTTCAGCAAGTGTTTAACA+TGG 0.622260 3:-85826228 MsG0380016623.01.T01:CDS
AGTTCCGTTATGCTCAGCCC+AGG 0.622502 3:-85824962 MsG0380016623.01.T01:intron
ATCCATGGCGCCTTACACCG+GGG 0.629680 3:-85825525 MsG0380016623.01.T01:CDS
GTAGTTAATTCGCTGTGTGG+TGG 0.636978 3:+85826502 None:intergenic
ATGTTACATAACAATAACAA+TGG 0.640677 3:-85826462 MsG0380016623.01.T01:exon
CCATGTTAAACACTTGCTGA+AGG 0.643305 3:+85826228 None:intergenic
TTGGTAGTTAATTCGCTGTG+TGG 0.663391 3:+85826499 None:intergenic
CCAAACTTCCAACTGGACCA+AGG 0.674362 3:-85824435 MsG0380016623.01.T01:intron
CTGAGCATAACGGAACTCCA+CGG 0.675511 3:+85824968 None:intergenic
AAAACCAGAAGCTCAAGATG+GGG 0.683749 3:-85826337 MsG0380016623.01.T01:CDS
CCCATTGGAGACACACTGAG+AGG 0.699929 3:+85826314 None:intergenic
GTAAGCATTCCAAGTCCTAG+AGG 0.710131 3:+85824475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGTTAAAATGATTAA+TGG + Chr3:85824826-85824845 None:intergenic 10.0%
!! ATAATAGATTATTCAATTAA+AGG - Chr3:85825986-85826005 MsG0380016623.01.T01:intron 10.0%
!!! TTTATGTCTTTATTTTATAT+TGG - Chr3:85824349-85824368 MsG0380016623.01.T01:intron 10.0%
!! AATAATTCATGTTTAATACT+AGG - Chr3:85824229-85824248 MsG0380016623.01.T01:intron 15.0%
!! GTTAAATTATACCAAATTAA+AGG + Chr3:85823346-85823365 None:intergenic 15.0%
!! TACATTTAACATTGATAAAA+AGG + Chr3:85823391-85823410 None:intergenic 15.0%
!!! ATATTTAGAACATTATTAAG+TGG - Chr3:85825028-85825047 MsG0380016623.01.T01:CDS 15.0%
!!! TTTAACAATTTTAACATTTC+AGG - Chr3:85824834-85824853 MsG0380016623.01.T01:intron 15.0%
!! AACAAAAAAGGAAAATGATA+AGG - Chr3:85824612-85824631 MsG0380016623.01.T01:intron 20.0%
!! AGACAATGAATTTATTTGAT+CGG + Chr3:85826301-85826320 None:intergenic 20.0%
!! AGTAAAGCAAATATTTGTAA+TGG + Chr3:85824038-85824057 None:intergenic 20.0%
!! ATGTTACATAACAATAACAA+TGG - Chr3:85822959-85822978 MsG0380016623.01.T01:CDS 20.0%
!! ATTTATACACAAAATGCTAA+AGG + Chr3:85825264-85825283 None:intergenic 20.0%
!! GGAAAATAAAATCTACAAAA+TGG + Chr3:85825657-85825676 None:intergenic 20.0%
!! TAATTCCACATTAGATAAAA+TGG + Chr3:85825559-85825578 None:intergenic 20.0%
!! TTAAGAAACTACAACAAAAA+AGG - Chr3:85824600-85824619 MsG0380016623.01.T01:intron 20.0%
!! TTATCCAGTTTATCAATTAT+AGG - Chr3:85826535-85826554 MsG0380016623.01.T01:five_prime_UTR 20.0%
!! TTGATTAATGTGAAAATTAC+AGG + Chr3:85825717-85825736 None:intergenic 20.0%
!! TTTATACACAAAATGCTAAA+GGG + Chr3:85825263-85825282 None:intergenic 20.0%
!!! AACACAACTTACTTTTTTAA+AGG - Chr3:85826171-85826190 MsG0380016623.01.T01:CDS 20.0%
!!! ATATGGATTATGAATTAGAT+TGG - Chr3:85823444-85823463 MsG0380016623.01.T01:intron 20.0%
!!! ATCATACTTTTCCTTTAATT+TGG - Chr3:85823332-85823351 MsG0380016623.01.T01:intron 20.0%
!!! TAACATTCAAATTTTGCTTT+TGG - Chr3:85824508-85824527 MsG0380016623.01.T01:CDS 20.0%
!!! TGATTTGCAATTAATAACAA+AGG + Chr3:85825094-85825113 None:intergenic 20.0%
!!! TGTTTTGATATAAGCTATTA+TGG - Chr3:85823638-85823657 MsG0380016623.01.T01:intron 20.0%
!!! TTAATCCATTTTATCTAATG+TGG - Chr3:85825551-85825570 MsG0380016623.01.T01:CDS 20.0%
!!! TTAGCATCATTAACTTTTTT+TGG - Chr3:85825064-85825083 MsG0380016623.01.T01:intron 20.0%
!!! TTTTTTGTTGTAGTTTCTTA+AGG + Chr3:85824601-85824620 None:intergenic 20.0%
! AAATATTAGTGTGATGAAAG+AGG - Chr3:85823410-85823429 MsG0380016623.01.T01:intron 25.0%
! AAATGCCAATATTAAAAACC+CGG - Chr3:85825914-85825933 MsG0380016623.01.T01:intron 25.0%
! AATAAGCTTAAAACAACTCA+AGG - Chr3:85823672-85823691 MsG0380016623.01.T01:intron 25.0%
! AGTGAATGAATTGACATTTA+AGG + Chr3:85826132-85826151 None:intergenic 25.0%
! ATAATGACAGCATAATTTGA+AGG + Chr3:85824761-85824780 None:intergenic 25.0%
! GACAATGAATTTATTTGATC+GGG + Chr3:85826300-85826319 None:intergenic 25.0%
! GATTAAAAGAAAGATACGTA+TGG + Chr3:85825537-85825556 None:intergenic 25.0%
! GATTATGAATTAGATTGGAT+TGG - Chr3:85823449-85823468 MsG0380016623.01.T01:intron 25.0%
! GTTATTAATTGCAAATCACA+GGG - Chr3:85825096-85825115 MsG0380016623.01.T01:intron 25.0%
! TAAAAAAGAACGAAAGTAGT+AGG + Chr3:85825235-85825254 None:intergenic 25.0%
! TAATATCATTCAGTCAGAAT+AGG + Chr3:85823966-85823985 None:intergenic 25.0%
! TAGTCACTAATGAGATTAAA+AGG + Chr3:85824541-85824560 None:intergenic 25.0%
! TGTTATTAATTGCAAATCAC+AGG - Chr3:85825095-85825114 MsG0380016623.01.T01:intron 25.0%
! TTATACACAAAATGCTAAAG+GGG + Chr3:85825262-85825281 None:intergenic 25.0%
! TTATTAATTGCAAATCACAG+GGG - Chr3:85825097-85825116 MsG0380016623.01.T01:intron 25.0%
! TTGAATGAAATGAACTTTCA+GGG - Chr3:85824079-85824098 MsG0380016623.01.T01:intron 25.0%
! TTTAATACTAGGATCACATT+AGG - Chr3:85824240-85824259 MsG0380016623.01.T01:CDS 25.0%
! TTTATTTGCAATATCTCTCA+GGG + Chr3:85825170-85825189 None:intergenic 25.0%
!! AACATAACACAAATCAGTTT+TGG + Chr3:85822944-85822963 None:intergenic 25.0%
!! AACCATACTTTAAAGACATT+TGG - Chr3:85824272-85824291 MsG0380016623.01.T01:CDS 25.0%
!! AATGTGAAAATTACAGGTTT+TGG + Chr3:85825711-85825730 None:intergenic 25.0%
!! ACCATACTTTAAAGACATTT+GGG - Chr3:85824273-85824292 MsG0380016623.01.T01:CDS 25.0%
!! TTCATTTCATTCAAGTTCAA+TGG + Chr3:85824073-85824092 None:intergenic 25.0%
!!! ACCTGGTTTGAAAAATATTT+TGG + Chr3:85826508-85826527 None:intergenic 25.0%
!!! TAAGGCATTTTTTTATCAGT+AGG - Chr3:85825424-85825443 MsG0380016623.01.T01:intron 25.0%
!!! TCCAAAATATTTTTCAAACC+AGG - Chr3:85826504-85826523 MsG0380016623.01.T01:five_prime_UTR 25.0%
!!! TTATTTTATATTGGCATCCA+GGG - Chr3:85824358-85824377 MsG0380016623.01.T01:intron 25.0%
!!! TTTATTTTATATTGGCATCC+AGG - Chr3:85824357-85824376 MsG0380016623.01.T01:intron 25.0%
!!! TTTTATTTGCAATATCTCTC+AGG + Chr3:85825171-85825190 None:intergenic 25.0%
!!! TTTTCAAGAATTAGCTCTTT+GGG - Chr3:85824175-85824194 MsG0380016623.01.T01:intron 25.0%
AGTAGTAGTGTACAAAAGAT+TGG + Chr3:85825872-85825891 None:intergenic 30.0%
ATAAATTGGTGCATATGCAA+AGG - Chr3:85826350-85826369 MsG0380016623.01.T01:CDS 30.0%
CAAAGAGCTAATTCTTGAAA+AGG + Chr3:85824176-85824195 None:intergenic 30.0%
CGAAAGTAGTAGGTAAAAAT+AGG + Chr3:85825225-85825244 None:intergenic 30.0%
CTATTTAAGCAAATACTTCC+AGG - Chr3:85825124-85825143 MsG0380016623.01.T01:intron 30.0%
CTCAATTAGGGGATTTATAA+TGG - Chr3:85823502-85823521 MsG0380016623.01.T01:intron 30.0%
CTTGAATGAAATGAACTTTC+AGG - Chr3:85824078-85824097 MsG0380016623.01.T01:intron 30.0%
TAACTGTTGTTGAAACATCA+TGG + Chr3:85822894-85822913 None:intergenic 30.0%
TCATTAGTGACTAATAACCA+TGG - Chr3:85824548-85824567 MsG0380016623.01.T01:CDS 30.0%
TTGCAATCACAATTTCATTC+CGG + Chr3:85823861-85823880 None:intergenic 30.0%
TTTAGTGGCAATGTATGATA+AGG - Chr3:85824202-85824221 MsG0380016623.01.T01:intron 30.0%
TTTGACTGTCAATTCATTTG+AGG - Chr3:85825330-85825349 MsG0380016623.01.T01:intron 30.0%
! AAGAGTATATGTGATTCTCT+GGG - Chr3:85824901-85824920 MsG0380016623.01.T01:intron 30.0%
! AAGTTCATTCAAGATTTTCG+AGG - Chr3:85823302-85823321 MsG0380016623.01.T01:intron 30.0%
! AATTTTCTTTGCTAAGCATG+GGG - Chr3:85824860-85824879 MsG0380016623.01.T01:intron 30.0%
! CAATTTTCTTTGCTAAGCAT+GGG - Chr3:85824859-85824878 MsG0380016623.01.T01:intron 30.0%
! CACTTTTCTTTTAGTCATTC+TGG + Chr3:85824735-85824754 None:intergenic 30.0%
! CATTTAAGGTTTGTCTTCTT+TGG + Chr3:85826118-85826137 None:intergenic 30.0%
! CCATACTTTAAAGACATTTG+GGG - Chr3:85824274-85824293 MsG0380016623.01.T01:CDS 30.0%
! GGGTTTTTAATATTGGCATT+TGG + Chr3:85825915-85825934 None:intergenic 30.0%
! TATGTCAGGTTGCAATAAAT+TGG - Chr3:85826336-85826355 MsG0380016623.01.T01:CDS 30.0%
! TGAATTAGATTGGATTGGAT+TGG - Chr3:85823454-85823473 MsG0380016623.01.T01:intron 30.0%
!! CTTTTCAAGAATTAGCTCTT+TGG - Chr3:85824174-85824193 MsG0380016623.01.T01:intron 30.0%
!! GAATAGTTCTGATGTTGTTA+CGG + Chr3:85826071-85826090 None:intergenic 30.0%
!! TTGGTTGGTCTTTCTTTAAA+GGG + Chr3:85826207-85826226 None:intergenic 30.0%
!! TTTGATACTGCTGATTCTTA+TGG - Chr3:85823239-85823258 MsG0380016623.01.T01:intron 30.0%
AAACTAAAACCATGCTCTGA+TGG - Chr3:85825946-85825965 MsG0380016623.01.T01:intron 35.0%
AAATATGTTCCAAGCCTGAA+GGG - Chr3:85825358-85825377 MsG0380016623.01.T01:intron 35.0%
AACAATAGTGCTAGTGAATG+GGG - Chr3:85825599-85825618 MsG0380016623.01.T01:intron 35.0%
AACACAAGCAGAGGAAAATT+TGG - Chr3:85826403-85826422 MsG0380016623.01.T01:CDS 35.0%
AACTGGATAACATGTATACC+TGG + Chr3:85826525-85826544 None:intergenic 35.0%
AAGAGGAAGAGATGATGATA+TGG - Chr3:85823427-85823446 MsG0380016623.01.T01:intron 35.0%
AAGTTATGTTCTCCAGAAGA+TGG + Chr3:85825794-85825813 None:intergenic 35.0%
ACACAAGCAGAGGAAAATTT+GGG - Chr3:85826404-85826423 MsG0380016623.01.T01:CDS 35.0%
ACTATTCCCACTTCATTATC+AGG - Chr3:85826084-85826103 MsG0380016623.01.T01:intron 35.0%
ACTTATCCAAACAGTCAGTA+AGG + Chr3:85823542-85823561 None:intergenic 35.0%
AGACCAAGGCAATAAATGAA+CGG + Chr3:85824791-85824810 None:intergenic 35.0%
AGGCGATATATAGCTCAATT+AGG - Chr3:85823489-85823508 MsG0380016623.01.T01:intron 35.0%
AGTTATGTTCTCCAGAAGAT+GGG + Chr3:85825793-85825812 None:intergenic 35.0%
ATTATCAAGTTCTTCCTACG+CGG - Chr3:85824008-85824027 MsG0380016623.01.T01:intron 35.0%
ATTATGCATTACACTCTACC+TGG + Chr3:85824480-85824499 None:intergenic 35.0%
CAACAATAGTGCTAGTGAAT+GGG - Chr3:85825598-85825617 MsG0380016623.01.T01:intron 35.0%
CATGATTACTTGAAAAACCG+TGG - Chr3:85824436-85824455 MsG0380016623.01.T01:CDS 35.0%
CTAACTTGACAACTAAACCA+TGG + Chr3:85824568-85824587 None:intergenic 35.0%
GAAAAAGATTACCTGTGACA+TGG + Chr3:85825203-85825222 None:intergenic 35.0%
GCACTATTGTTGGAATTCAA+AGG + Chr3:85825590-85825609 None:intergenic 35.0%
GCGATATATAGCTCAATTAG+GGG - Chr3:85823491-85823510 MsG0380016623.01.T01:intron 35.0%
GCTGTTGGAGTAAGTAATTA+TGG - Chr3:85824391-85824410 MsG0380016623.01.T01:intron 35.0%
GGCGATATATAGCTCAATTA+GGG - Chr3:85823490-85823509 MsG0380016623.01.T01:intron 35.0%
GTAATTGCTTATAGTCCTCT+AGG - Chr3:85824931-85824950 MsG0380016623.01.T01:intron 35.0%
TAAATATGTTCCAAGCCTGA+AGG - Chr3:85825357-85825376 MsG0380016623.01.T01:intron 35.0%
TAAGAACTTGCGAAACTGTT+TGG + Chr3:85823734-85823753 None:intergenic 35.0%
TATCTTGCATGAGTGGTTTA+AGG - Chr3:85825406-85825425 MsG0380016623.01.T01:intron 35.0%
TCTCATTCAGAAACTCAATG+AGG + Chr3:85824688-85824707 None:intergenic 35.0%
TGAATTTATTTGATCGGGCA+AGG + Chr3:85826295-85826314 None:intergenic 35.0%
TGTATCTTCAAAAGCTGCTT+TGG + Chr3:85824418-85824437 None:intergenic 35.0%
TTAAGGTTTGTCTTCTTTGG+TGG + Chr3:85826115-85826134 None:intergenic 35.0%
TTATCAGTAGGAATCGTACT+TGG - Chr3:85825436-85825455 MsG0380016623.01.T01:intron 35.0%
TTATGCATTACACTCTACCT+GGG + Chr3:85824479-85824498 None:intergenic 35.0%
TTGAAAGGAAACGATGGTAA+GGG + Chr3:85823035-85823054 None:intergenic 35.0%
TTTAACATGGCTGTTGAGAA+TGG - Chr3:85823206-85823225 MsG0380016623.01.T01:intron 35.0%
TTTGAAAGGAAACGATGGTA+AGG + Chr3:85823036-85823055 None:intergenic 35.0%
! AAAGGTACAATTCCAATTCC+TGG - Chr3:85826368-85826387 MsG0380016623.01.T01:CDS 35.0%
! AGATTGGATTGGATTGGAAA+AGG - Chr3:85823460-85823479 MsG0380016623.01.T01:intron 35.0%
! ATTTTCTTTGCTAAGCATGG+GGG - Chr3:85824861-85824880 MsG0380016623.01.T01:intron 35.0%
! CAAGAGTATATGTGATTCTC+TGG - Chr3:85824900-85824919 MsG0380016623.01.T01:intron 35.0%
! CGTAGGAAGAACTTGATAAT+AGG + Chr3:85824008-85824027 None:intergenic 35.0%
! GATGATCCTGATAATGAAGT+GGG + Chr3:85826093-85826112 None:intergenic 35.0%
! GATTGGATTGGATTGGAAAA+GGG - Chr3:85823461-85823480 MsG0380016623.01.T01:intron 35.0%
! GCAATTTTCTTTGCTAAGCA+TGG - Chr3:85824858-85824877 MsG0380016623.01.T01:intron 35.0%
! TATGGTACTGGAAGGTTTAA+TGG - Chr3:85823257-85823276 MsG0380016623.01.T01:intron 35.0%
! TTGTGCCGGGTTTTTAATAT+TGG + Chr3:85825922-85825941 None:intergenic 35.0%
!! CAAAATTTGCTGCTTATCCA+TGG - Chr3:85823881-85823900 MsG0380016623.01.T01:intron 35.0%
!! CCCCAAATGTCTTTAAAGTA+TGG + Chr3:85824277-85824296 None:intergenic 35.0%
!! GTTGGTTGGTCTTTCTTTAA+AGG + Chr3:85826208-85826227 None:intergenic 35.0%
!! TCATTCAAGATTTTCGAGGT+TGG - Chr3:85823306-85823325 MsG0380016623.01.T01:intron 35.0%
!!! GTTTTAGTTTTCTGTTGTGC+CGG + Chr3:85825936-85825955 None:intergenic 35.0%
!!! TTTTAGTTTTCTGTTGTGCC+GGG + Chr3:85825935-85825954 None:intergenic 35.0%
AAAACCAGAAGCTCAAGATG+GGG - Chr3:85823084-85823103 MsG0380016623.01.T01:intron 40.0%
AATATCACTCAGTTGCTCAG+AGG - Chr3:85825281-85825300 MsG0380016623.01.T01:CDS 40.0%
ACGCATCACATTGTTATGTC+AGG - Chr3:85826322-85826341 MsG0380016623.01.T01:CDS 40.0%
AGGATGCAGATTGAGCAAAT+TGG - Chr3:85824113-85824132 MsG0380016623.01.T01:intron 40.0%
AGGCAATAAATGAACGGTTG+TGG + Chr3:85824785-85824804 None:intergenic 40.0%
AGGCTATATGCTTCTTCCTT+CGG - Chr3:85825837-85825856 MsG0380016623.01.T01:intron 40.0%
AGTCAGTAAGGCATGTATGA+AGG + Chr3:85823530-85823549 None:intergenic 40.0%
AGTGGTATATCTTGCATGAG+TGG - Chr3:85825399-85825418 MsG0380016623.01.T01:intron 40.0%
ATGCACTTCCTCAGAGAAAA+AGG - Chr3:85823831-85823850 MsG0380016623.01.T01:intron 40.0%
ATGGGGTAATCAGCTTCTTT+GGG - Chr3:85823145-85823164 MsG0380016623.01.T01:intron 40.0%
CAAAACCAGAAGCTCAAGAT+GGG - Chr3:85823083-85823102 MsG0380016623.01.T01:intron 40.0%
CAACCGTTCATTTATTGCCT+TGG - Chr3:85824785-85824804 MsG0380016623.01.T01:intron 40.0%
CAAGTCAATAACACAAGCAG+AGG - Chr3:85826394-85826413 MsG0380016623.01.T01:CDS 40.0%
CAGATTGAGCAAATTGGGAT+AGG - Chr3:85824119-85824138 MsG0380016623.01.T01:intron 40.0%
CATAGGGAAGGGAATTTGAA+AGG + Chr3:85823050-85823069 None:intergenic 40.0%
CCAACAATAGTGCTAGTGAA+TGG - Chr3:85825597-85825616 MsG0380016623.01.T01:intron 40.0%
CCATTCACTAGCACTATTGT+TGG + Chr3:85825600-85825619 None:intergenic 40.0%
CCTATTATGCTGTCATACTC+AGG - Chr3:85825817-85825836 MsG0380016623.01.T01:intron 40.0%
CCTGAGTATGACAGCATAAT+AGG + Chr3:85825820-85825839 None:intergenic 40.0%
CCTTCAGCAAGTGTTTAACA+TGG - Chr3:85823193-85823212 MsG0380016623.01.T01:intron 40.0%
CTTTCAAATTCCCTTCCCTA+TGG - Chr3:85823048-85823067 MsG0380016623.01.T01:CDS 40.0%
GCTCTTGTCAAATAAGTGTG+AGG + Chr3:85825678-85825697 None:intergenic 40.0%
GGATGCAGATTGAGCAAATT+GGG - Chr3:85824114-85824133 MsG0380016623.01.T01:intron 40.0%
GGGAATTTGAAAGGAAACGA+TGG + Chr3:85823041-85823060 None:intergenic 40.0%
GTCAGAGTGAGAAACTTCTT+GGG - Chr3:85823279-85823298 MsG0380016623.01.T01:intron 40.0%
TAAGCAAATACTTCCAGGAC+TGG - Chr3:85825129-85825148 MsG0380016623.01.T01:intron 40.0%
TAGGACAAGGACAGTTATGT+GGG + Chr3:85826230-85826249 None:intergenic 40.0%
TAGGACTTGGAATGCTTACT+GGG - Chr3:85824950-85824969 MsG0380016623.01.T01:intron 40.0%
TCTAATAAGTCAGTCCAAGC+AGG - Chr3:85823769-85823788 MsG0380016623.01.T01:intron 40.0%
TCTCTCAGGGAACTCAATAA+AGG + Chr3:85825157-85825176 None:intergenic 40.0%
TGAAAGGAAACGATGGTAAG+GGG + Chr3:85823034-85823053 None:intergenic 40.0%
TGCACTTCCTCAGAGAAAAA+GGG - Chr3:85823832-85823851 MsG0380016623.01.T01:intron 40.0%
TTGGGGCTATCAAGAATCTA+TGG - Chr3:85823163-85823182 MsG0380016623.01.T01:intron 40.0%
TTGTCAGTTGTAACACACCT+AGG + Chr3:85826249-85826268 None:intergenic 40.0%
TTTATTTGATCGGGCAAGGT+TGG + Chr3:85826291-85826310 None:intergenic 40.0%
TTTCTATGACCATCAGAGCA+TGG + Chr3:85825958-85825977 None:intergenic 40.0%
! CAAGAATTAGCTCTTTGGGA+TGG - Chr3:85824179-85824198 MsG0380016623.01.T01:intron 40.0%
! CATTTATTGCCTTGGTCTTC+TGG - Chr3:85824793-85824812 MsG0380016623.01.T01:intron 40.0%
! CCATGTTAAACACTTGCTGA+AGG + Chr3:85823196-85823215 None:intergenic 40.0%
! CTGATTCTTATGGTACTGGA+AGG - Chr3:85823249-85823268 MsG0380016623.01.T01:intron 40.0%
! GGATGATCCTGATAATGAAG+TGG + Chr3:85826094-85826113 None:intergenic 40.0%
! TACATGCCTTACTGACTGTT+TGG - Chr3:85823533-85823552 MsG0380016623.01.T01:intron 40.0%
! TAGACTTCGGTAGTGGTTTA+AGG - Chr3:85825505-85825524 MsG0380016623.01.T01:CDS 40.0%
! TTGGTAGTTAATTCGCTGTG+TGG + Chr3:85822925-85822944 None:intergenic 40.0%
! TTTGTAATGGAATTCCGCGT+AGG + Chr3:85824025-85824044 None:intergenic 40.0%
!! ACTGCTGATTCTTATGGTAC+TGG - Chr3:85823245-85823264 MsG0380016623.01.T01:intron 40.0%
!! ATATTTTGGATCATCCTGCG+AGG + Chr3:85826494-85826513 None:intergenic 40.0%
!! ATTGACTTGACTCCAGGAAT+TGG + Chr3:85826383-85826402 None:intergenic 40.0%
!! TGTGTTATTGACTTGACTCC+AGG + Chr3:85826389-85826408 None:intergenic 40.0%
!! TGTTTTCTCATTAGCCTGCT+TGG + Chr3:85823786-85823805 None:intergenic 40.0%
!!! CATCTTGAGCTTCTGGTTTT+GGG + Chr3:85823084-85823103 None:intergenic 40.0%
!!! TCCAATGGGTTTTGGAACTT+GGG - Chr3:85823121-85823140 MsG0380016623.01.T01:intron 40.0%
!!! TCTTGCTGCAGTTTTGTTGT+TGG - Chr3:85822990-85823009 MsG0380016623.01.T01:CDS 40.0%
AAACGAGCTACTTCAGTTGG+AGG - Chr3:85826451-85826470 MsG0380016623.01.T01:exon 45.0%
AAGACGCAAAACCATGTCAC+AGG - Chr3:85825189-85825208 MsG0380016623.01.T01:intron 45.0%
ACAAGGACAGTTATGTGGGT+TGG + Chr3:85826226-85826245 None:intergenic 45.0%
AGAGGAAAATTTGGGTGCTC+TGG - Chr3:85826412-85826431 MsG0380016623.01.T01:CDS 45.0%
AGATTGGATCAGAAGACCGA+AGG + Chr3:85825856-85825875 None:intergenic 45.0%
CAACAGCTTGAACTAAACCC+TGG + Chr3:85824378-85824397 None:intergenic 45.0%
CAACCACTTGTGCTAGACTT+CGG - Chr3:85825492-85825511 MsG0380016623.01.T01:intron 45.0%
CAACTGAAGTAGCTCGTTTG+AGG + Chr3:85826450-85826469 None:intergenic 45.0%
CACATAACTGTCCTTGTCCT+AGG - Chr3:85826229-85826248 MsG0380016623.01.T01:CDS 45.0%
CATGGGGTAATCAGCTTCTT+TGG - Chr3:85823144-85823163 MsG0380016623.01.T01:intron 45.0%
CCAAAACCAGAAGCTCAAGA+TGG - Chr3:85823082-85823101 MsG0380016623.01.T01:intron 45.0%
CTAGGACAAGGACAGTTATG+TGG + Chr3:85826231-85826250 None:intergenic 45.0%
CTAGGACTTGGAATGCTTAC+TGG - Chr3:85824949-85824968 MsG0380016623.01.T01:intron 45.0%
CTCAAACGAGCTACTTCAGT+TGG - Chr3:85826448-85826467 MsG0380016623.01.T01:exon 45.0%
CTCAATAAAGGATCCAGTCC+TGG + Chr3:85825145-85825164 None:intergenic 45.0%
GAGGAAAATTTGGGTGCTCT+GGG - Chr3:85826413-85826432 MsG0380016623.01.T01:CDS 45.0%
GCACTTCCTCAGAGAAAAAG+GGG - Chr3:85823833-85823852 MsG0380016623.01.T01:intron 45.0%
GCTTACAGTTCCGTCTACTT+TGG - Chr3:85825743-85825762 MsG0380016623.01.T01:intron 45.0%
GGTCAGAGTGAGAAACTTCT+TGG - Chr3:85823278-85823297 MsG0380016623.01.T01:intron 45.0%
GTAAGCATTCCAAGTCCTAG+AGG + Chr3:85824949-85824968 None:intergenic 45.0%
GTAGTTAATTCGCTGTGTGG+TGG + Chr3:85822922-85822941 None:intergenic 45.0%
GTTGTAACACACCTAGGACA+AGG + Chr3:85826243-85826262 None:intergenic 45.0%
TAGACGGAACTGTAAGCATG+CGG + Chr3:85825740-85825759 None:intergenic 45.0%
TCAGCATCCAAACTTCCAAC+TGG - Chr3:85824979-85824998 MsG0380016623.01.T01:CDS 45.0%
TGGGGTAATCAGCTTCTTTG+GGG - Chr3:85823146-85823165 MsG0380016623.01.T01:intron 45.0%
TTGGGATAGGACAACTGCAT+TGG - Chr3:85824132-85824151 MsG0380016623.01.T01:intron 45.0%
! AAAATTTGGGTGCTCTGGGT+TGG - Chr3:85826417-85826436 MsG0380016623.01.T01:CDS 45.0%
! CAGGGTTTAGTTCAAGCTGT+TGG - Chr3:85824376-85824395 MsG0380016623.01.T01:intron 45.0%
! CTTTCAGGGCATCACTAGAT+AGG - Chr3:85824093-85824112 MsG0380016623.01.T01:intron 45.0%
! GGAAGTATACCAGAAGACCA+AGG + Chr3:85824805-85824824 None:intergenic 45.0%
! GGATTGGATTGGAAAAGGGA+AGG - Chr3:85823465-85823484 MsG0380016623.01.T01:intron 45.0%
! TGGATTGGAAAAGGGAAGGA+AGG - Chr3:85823469-85823488 MsG0380016623.01.T01:intron 45.0%
!! AGCTCTTTGGGATGGTTTAG+TGG - Chr3:85824187-85824206 MsG0380016623.01.T01:intron 45.0%
!! AGTGTGTCTCCAATGGGTTT+TGG - Chr3:85823113-85823132 MsG0380016623.01.T01:intron 45.0%
!! GCTTATAGTCCTCTAGGACT+TGG - Chr3:85824937-85824956 MsG0380016623.01.T01:intron 45.0%
!!! CCATCTTGAGCTTCTGGTTT+TGG + Chr3:85823085-85823104 None:intergenic 45.0%
!!! CTCCAATGGGTTTTGGAACT+TGG - Chr3:85823120-85823139 MsG0380016623.01.T01:intron 45.0%
!!! TTCTGGTTTTGGGTGGATGA+TGG + Chr3:85823074-85823093 None:intergenic 45.0%
AGTTCCGTCTACTTTGGCAC+CGG - Chr3:85825749-85825768 MsG0380016623.01.T01:intron 50.0%
CCAAACTTCCAACTGGACCA+AGG - Chr3:85824986-85825005 MsG0380016623.01.T01:CDS 50.0%
CCACTACACAGTACACCTTC+AGG + Chr3:85825384-85825403 None:intergenic 50.0%
CCTCTCAGTGTGTCTCCAAT+GGG - Chr3:85823107-85823126 MsG0380016623.01.T01:intron 50.0%
CCTTGGTCCAGTTGGAAGTT+TGG + Chr3:85824989-85825008 None:intergenic 50.0%
CTACCGAAGTCTAGCACAAG+TGG + Chr3:85825498-85825517 None:intergenic 50.0%
CTTGTGCTAGACTTCGGTAG+TGG - Chr3:85825498-85825517 MsG0380016623.01.T01:intron 50.0%
GCCCAAGTTCCAAAACCCAT+TGG + Chr3:85823125-85823144 None:intergenic 50.0%
GCGTAGATGTCAACACACCT+TGG + Chr3:85825006-85825025 None:intergenic 50.0%
GTTTGTCGATGCTTGCAGGT+AGG - Chr3:85823921-85823940 MsG0380016623.01.T01:intron 50.0%
TCAACACACCTTGGTCCAGT+TGG + Chr3:85824997-85825016 None:intergenic 50.0%
TCTACCTGGGCTGAGCATAA+CGG + Chr3:85824466-85824485 None:intergenic 50.0%
TGGAGCTCAGAACAAGGACA+CGG + Chr3:85825895-85825914 None:intergenic 50.0%
TTATCCATGGCGCCTTACAC+CGG - Chr3:85823894-85823913 MsG0380016623.01.T01:intron 50.0%
! CCTGAAGGTGTACTGTGTAG+TGG - Chr3:85825381-85825400 MsG0380016623.01.T01:intron 50.0%
! CTGAGCATAACGGAACTCCA+CGG + Chr3:85824456-85824475 None:intergenic 50.0%
! GGCATTTGGAGCTCAGAACA+AGG + Chr3:85825901-85825920 None:intergenic 50.0%
! TGGATGATGGCCATAGGGAA+GGG + Chr3:85823061-85823080 None:intergenic 50.0%
! TTGGGTGGATGATGGCCATA+GGG + Chr3:85823066-85823085 None:intergenic 50.0%
! TTTGGGTGGATGATGGCCAT+AGG + Chr3:85823067-85823086 None:intergenic 50.0%
!! GGACAGTTATGTGGGTTGGT+TGG + Chr3:85826222-85826241 None:intergenic 50.0%
!!! CTTGAGCTTCTGGTTTTGGG+TGG + Chr3:85823081-85823100 None:intergenic 50.0%
!!! GGGTTTTGGAACTTGGGCAT+GGG - Chr3:85823127-85823146 MsG0380016623.01.T01:intron 50.0%
!!! GGTTTTGGAACTTGGGCATG+GGG - Chr3:85823128-85823147 MsG0380016623.01.T01:intron 50.0%
!!! TGGGTTTTGGAACTTGGGCA+TGG - Chr3:85823126-85823145 MsG0380016623.01.T01:intron 50.0%
AGTACACCTTCAGGCCCTTC+AGG + Chr3:85825375-85825394 None:intergenic 55.0%
AGTTCCGTTATGCTCAGCCC+AGG - Chr3:85824459-85824478 MsG0380016623.01.T01:CDS 55.0%
CCCATTGGAGACACACTGAG+AGG + Chr3:85823110-85823129 None:intergenic 55.0%
CCTCAGAGAAAAAGGGGAGC+CGG - Chr3:85823839-85823858 MsG0380016623.01.T01:intron 55.0%
GCCTCTCAGTGTGTCTCCAA+TGG - Chr3:85823106-85823125 MsG0380016623.01.T01:intron 55.0%
GGCAGTTTGTCGATGCTTGC+AGG - Chr3:85823917-85823936 MsG0380016623.01.T01:intron 55.0%
TATCCATGGCGCCTTACACC+GGG - Chr3:85823895-85823914 MsG0380016623.01.T01:intron 55.0%
! CCTACCGGTGCCAAAGTAGA+CGG + Chr3:85825756-85825775 None:intergenic 55.0%
! GTGGATGATGGCCATAGGGA+AGG + Chr3:85823062-85823081 None:intergenic 55.0%
!! CAAGCATCGACAAACTGCCC+CGG + Chr3:85823916-85823935 None:intergenic 55.0%
ACCTTCAGGCCCTTCAGGCT+TGG + Chr3:85825370-85825389 None:intergenic 60.0%
AGAAGATGGGCCAAGCCTGC+AGG + Chr3:85825780-85825799 None:intergenic 60.0%
ATCCATGGCGCCTTACACCG+GGG - Chr3:85823896-85823915 MsG0380016623.01.T01:intron 60.0%
CGACAAACTGCCCCGGTGTA+AGG + Chr3:85823909-85823928 None:intergenic 60.0%
GAAGATGGGCCAAGCCTGCA+GGG + Chr3:85825779-85825798 None:intergenic 60.0%
GAGGCCCCATCTTGAGCTTC+TGG + Chr3:85823091-85823110 None:intergenic 60.0%
TCCAAGCCTGAAGGGCCTGA+AGG - Chr3:85825366-85825385 MsG0380016623.01.T01:intron 60.0%
TGCAGGCTTGGCCCATCTTC+TGG - Chr3:85825779-85825798 MsG0380016623.01.T01:intron 60.0%
! CCGGCTCCCCTTTTTCTCTG+AGG + Chr3:85823842-85823861 None:intergenic 60.0%
!! CCGTCTACTTTGGCACCGGT+AGG - Chr3:85825753-85825772 MsG0380016623.01.T01:intron 60.0%
CAGCACAGCAATCGCCTCGC+AGG - Chr3:85826477-85826496 MsG0380016623.01.T01:five_prime_UTR 65.0%
ACCGGTAGGCCCTGCAGGCT+TGG - Chr3:85825767-85825786 MsG0380016623.01.T01:intron 70.0%
GCCAAGCCTGCAGGGCCTAC+CGG + Chr3:85825771-85825790 None:intergenic 70.0%
! TGCCCCGGTGTAAGGCGCCA+TGG + Chr3:85823901-85823920 None:intergenic 70.0%
!! TTGGCACCGGTAGGCCCTGC+AGG - Chr3:85825762-85825781 MsG0380016623.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85822887 85826556 85822887 ID=MsG0380016623.01;Name=MsG0380016623.01
Chr3 mRNA 85822887 85826556 85822887 ID=MsG0380016623.01.T01;Parent=MsG0380016623.01;Name=MsG0380016623.01.T01;_AED=0.50;_eAED=0.51;_QI=91|1|0.85|1|1|1|7|0|374
Chr3 exon 85822887 85823099 85822887 ID=MsG0380016623.01.T01:exon:21950;Parent=MsG0380016623.01.T01
Chr3 exon 85824233 85824326 85824233 ID=MsG0380016623.01.T01:exon:21949;Parent=MsG0380016623.01.T01
Chr3 exon 85824436 85824587 85824436 ID=MsG0380016623.01.T01:exon:21948;Parent=MsG0380016623.01.T01
Chr3 exon 85824963 85825064 85824963 ID=MsG0380016623.01.T01:exon:21947;Parent=MsG0380016623.01.T01
Chr3 exon 85825220 85825343 85825220 ID=MsG0380016623.01.T01:exon:21946;Parent=MsG0380016623.01.T01
Chr3 exon 85825505 85825598 85825505 ID=MsG0380016623.01.T01:exon:21945;Parent=MsG0380016623.01.T01
Chr3 exon 85826120 85826556 85826120 ID=MsG0380016623.01.T01:exon:21944;Parent=MsG0380016623.01.T01
Chr3 five_prime_UTR 85826466 85826556 85826466 ID=MsG0380016623.01.T01:five_prime_utr;Parent=MsG0380016623.01.T01
Chr3 CDS 85826120 85826465 85826120 ID=MsG0380016623.01.T01:cds;Parent=MsG0380016623.01.T01
Chr3 CDS 85825505 85825598 85825505 ID=MsG0380016623.01.T01:cds;Parent=MsG0380016623.01.T01
Chr3 CDS 85825220 85825343 85825220 ID=MsG0380016623.01.T01:cds;Parent=MsG0380016623.01.T01
Chr3 CDS 85824963 85825064 85824963 ID=MsG0380016623.01.T01:cds;Parent=MsG0380016623.01.T01
Chr3 CDS 85824436 85824587 85824436 ID=MsG0380016623.01.T01:cds;Parent=MsG0380016623.01.T01
Chr3 CDS 85824233 85824326 85824233 ID=MsG0380016623.01.T01:cds;Parent=MsG0380016623.01.T01
Chr3 CDS 85822887 85823099 85822887 ID=MsG0380016623.01.T01:cds;Parent=MsG0380016623.01.T01
Gene Sequence

>MsG0380016623.01.T01

ATGGCACTCTCATCTTGCTGCAGTTTTGTTGTTGGTTCATCAAATATTAACAACCCCTTACCATCGTTTCCTTTCAAATTCCCTTCCCTATGGCCATCATCCACCCAAAACCAGAAGCTCAAGATGGGGCCTCTCAGTGTGTCTCCAATGGGTTTTGGAACTTGGGCATGGGGTAATCAGCTTCTTTGGGGCTATCAAGAATCTATGGATGATGACCTTCAGCAAGTGTTTAACATGGCTGTTGAGAATGGTGTTAATCTTTTTGATACTGCTGATTCTTATGGTACTGGAAGGTTTAATGGTCAGAGTGAGAAACTTCTTGGGAAGTTCATTCAAGATTTTCGAGAGAAAAAGGGGAGCCGGAATGAAATTGTGATTGCAACAAAATTTGCTGCTTATCCATGGCGCCTTACACCGGGGCAGTTTGTCGATGCTTGCAGGGCATCACTAGATAGGATGCAGATTGAGCAAATTGGGATAGGACAACTGCATTGGTCAACTGCAAATTATGCTCCTTTTCAAGAATTAGCTCTTTGGGATGGTTTAGTGGCAATGTATGATAAGGGTTTAGTTCAAGCTGTTGGAGTAAGTAATTATGGACCAAAGCAGCTTTTGAAGATACATGATTACTTGAAAAACCGTGGAGTTCCGTTATGCTCAGCCCAGGTGCAATTTTCTTTGCTAAGCATGGGGGAAGATCAACTAGAGATCAAGAGTATATGTGATTCTCTGGGTATTCGCGTAATTGCTTATAGTCCTCTAGGACTTGGAATGCTTACTGGGAAATACTCAGCATCCAAACTTCCAACTGGACCAAGGGGATTGCTATTTAAGCAAATACTTCCAGGACTGGATCCTTTATTGAGTTCCCTGAGAGATATTGCAAATAAAAGACGCAAAACCATGTCACAGGTTGCAATAAATTGGTGCATATGCAAAGGTACAATTCCAATTCCTGGAGTCAAGTCAATAACACAAGCAGAGGAAAATTTGGGTGCTCTGGGTTGGCGTCTCTCCTCAAACGAGCTACTTCAGTTGGAGGATGCAGCACAGCAATCGCCTCGCAGGATGATCCAAAATATTTTTCAAACCAGGTATACATGTTATCCAGTTTATCAATTATAG

Protein sequence

>MsG0380016623.01.T01

MALSSCCSFVVGSSNINNPLPSFPFKFPSLWPSSTQNQKLKMGPLSVSPMGFGTWAWGNQLLWGYQESMDDDLQQVFNMAVENGVNLFDTADSYGTGRFNGQSEKLLGKFIQDFREKKGSRNEIVIATKFAAYPWRLTPGQFVDACRASLDRMQIEQIGIGQLHWSTANYAPFQELALWDGLVAMYDKGLVQAVGVSNYGPKQLLKIHDYLKNRGVPLCSAQVQFSLLSMGEDQLEIKSICDSLGIRVIAYSPLGLGMLTGKYSASKLPTGPRGLLFKQILPGLDPLLSSLRDIANKRRKTMSQVAINWCICKGTIPIPGVKSITQAEENLGALGWRLSSNELLQLEDAAQQSPRRMIQNIFQTRYTCYPVYQL*