Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007906.01.T01 | P93333.1 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 2.39E-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007906.01.T01 | P93333 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 2.98E-108 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007906.01.T01 | Q7FNV7 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 1.14e-105 | 308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048347.01 | MsG0280007906.01 | 0.811370 | 7.244651e-51 | 4.476297e-48 |
| MsG0080048352.01 | MsG0280007906.01 | 0.815799 | 7.683855e-52 | 5.350509e-49 |
| MsG0080049016.01 | MsG0280007906.01 | -0.800643 | 1.309067e-48 | 6.127139e-46 |
| MsG0180000459.01 | MsG0280007906.01 | -0.803760 | 2.989324e-49 | 1.514707e-46 |
| MsG0180001463.01 | MsG0280007906.01 | 0.802171 | 6.368431e-49 | 3.098354e-46 |
| MsG0180001533.01 | MsG0280007906.01 | 0.834490 | 2.908530e-56 | 3.457130e-53 |
| MsG0180003235.01 | MsG0280007906.01 | 0.807880 | 4.072709e-50 | 2.294569e-47 |
| MsG0180003237.01 | MsG0280007906.01 | 0.826869 | 2.140244e-54 | 2.032065e-51 |
| MsG0180003604.01 | MsG0280007906.01 | 0.815006 | 1.152836e-51 | 7.855266e-49 |
| MsG0180004937.01 | MsG0280007906.01 | -0.815570 | 8.638330e-52 | 5.977461e-49 |
| MsG0180004942.01 | MsG0280007906.01 | 0.824715 | 6.944540e-54 | 6.201425e-51 |
| MsG0180005356.01 | MsG0280007906.01 | 0.815076 | 1.112374e-51 | 7.593449e-49 |
| MsG0180005358.01 | MsG0280007906.01 | 0.820034 | 8.490737e-53 | 6.643812e-50 |
| MsG0180005648.01 | MsG0280007906.01 | 0.872671 | 2.658370e-67 | 1.122115e-63 |
| MsG0280006442.01 | MsG0280007906.01 | 0.833285 | 5.822836e-56 | 6.675093e-53 |
| MsG0280007600.01 | MsG0280007906.01 | -0.800098 | 1.690340e-48 | 7.802902e-46 |
| MsG0280007906.01 | MsG0280007908.01 | 0.944426 | 1.993930e-103 | 2.855547e-98 |
| MsG0280007906.01 | MsG0280007909.01 | 0.843578 | 1.285687e-58 | 2.020573e-55 |
| MsG0280007906.01 | MsG0280007911.01 | 0.915714 | 4.239380e-85 | 1.123342e-80 |
| MsG0280007906.01 | MsG0280010019.01 | 0.804050 | 2.602097e-49 | 1.328360e-46 |
| MsG0280007906.01 | MsG0280010461.01 | -0.824587 | 7.445776e-54 | 6.624305e-51 |
| MsG0280007906.01 | MsG0280010802.01 | 0.814446 | 1.534363e-51 | 1.029773e-48 |
| MsG0280007906.01 | MsG0380012654.01 | 0.829888 | 4.000722e-55 | 4.149015e-52 |
| MsG0280007906.01 | MsG0380016045.01 | 0.803495 | 3.392588e-49 | 1.707391e-46 |
| MsG0280007906.01 | MsG0380016086.01 | 0.867052 | 1.817977e-65 | 6.260661e-62 |
| MsG0280007906.01 | MsG0380017168.01 | 0.812888 | 3.380398e-51 | 2.174895e-48 |
| MsG0280007906.01 | MsG0380017754.01 | 0.807637 | 4.586152e-50 | 2.567621e-47 |
| MsG0280007906.01 | MsG0380017762.01 | -0.805443 | 1.331836e-49 | 7.046939e-47 |
| MsG0280007906.01 | MsG0380018070.01 | 0.814789 | 1.287941e-51 | 8.724290e-49 |
| MsG0280007906.01 | MsG0480018521.01 | 0.878597 | 2.469288e-69 | 1.297077e-65 |
| MsG0280007906.01 | MsG0480018522.01 | 0.910945 | 1.060537e-82 | 2.221347e-78 |
| MsG0280007906.01 | MsG0480019217.01 | 0.811875 | 5.625058e-51 | 3.522361e-48 |
| MsG0280007906.01 | MsG0480022309.01 | 0.822047 | 2.918445e-53 | 2.415509e-50 |
| MsG0280007906.01 | MsG0480022310.01 | 0.807281 | 5.457786e-50 | 3.027589e-47 |
| MsG0280007906.01 | MsG0480022311.01 | 0.810264 | 1.256932e-50 | 7.541884e-48 |
| MsG0280007906.01 | MsG0480022833.01 | 0.822566 | 2.211814e-53 | 1.858207e-50 |
| MsG0280007906.01 | MsG0480023006.01 | -0.803973 | 2.699865e-49 | 1.375553e-46 |
| MsG0280007906.01 | MsG0480023107.01 | 0.814667 | 1.370824e-51 | 9.254962e-49 |
| MsG0280007906.01 | MsG0580024086.01 | 0.842246 | 2.907381e-58 | 4.381570e-55 |
| MsG0280007906.01 | MsG0580024176.01 | 0.808060 | 3.728657e-50 | 2.110799e-47 |
| MsG0280007906.01 | MsG0580024202.01 | 0.862173 | 6.113908e-64 | 1.774118e-60 |
| MsG0280007906.01 | MsG0580024207.01 | 0.853024 | 3.140085e-61 | 6.690221e-58 |
| MsG0280007906.01 | MsG0580024217.01 | 0.869522 | 2.907408e-66 | 1.094658e-62 |
| MsG0280007906.01 | MsG0580024218.01 | 0.831276 | 1.829209e-55 | 1.975423e-52 |
| MsG0280007906.01 | MsG0580024219.01 | 0.881143 | 3.066277e-70 | 1.775890e-66 |
| MsG0280007906.01 | MsG0580024220.01 | 0.830130 | 3.492958e-55 | 3.647443e-52 |
| MsG0280007906.01 | MsG0580024408.01 | 0.825539 | 4.435389e-54 | 4.054359e-51 |
| MsG0280007906.01 | MsG0580024412.01 | 0.812743 | 3.636592e-51 | 2.330852e-48 |
| MsG0280007906.01 | MsG0580024986.01 | 0.890620 | 8.354495e-74 | 7.080138e-70 |
| MsG0280007906.01 | MsG0580024990.01 | 0.884777 | 1.434560e-71 | 9.591588e-68 |
| MsG0280007906.01 | MsG0580025965.01 | 0.868255 | 7.479696e-66 | 2.688078e-62 |
| MsG0280007906.01 | MsG0580026925.01 | 0.827624 | 1.411653e-54 | 1.370019e-51 |
| MsG0280007906.01 | MsG0580027751.01 | 0.804697 | 1.907709e-49 | 9.902263e-47 |
| MsG0280007906.01 | MsG0580028490.01 | 0.810518 | 1.107937e-50 | 6.692525e-48 |
| MsG0280007906.01 | MsG0580029706.01 | -0.811070 | 8.413354e-51 | 5.157661e-48 |
| MsG0280007906.01 | MsG0580029820.01 | -0.806799 | 6.901879e-50 | 3.780938e-47 |
| MsG0280007906.01 | MsG0580030133.01 | 0.841279 | 5.233286e-58 | 7.650855e-55 |
| MsG0280007906.01 | MsG0580030135.01 | 0.868722 | 5.285144e-66 | 1.931993e-62 |
| MsG0280007906.01 | MsG0580030145.01 | 0.821599 | 3.706570e-53 | 3.028956e-50 |
| MsG0280007906.01 | MsG0680030644.01 | -0.814085 | 1.843783e-51 | 1.225350e-48 |
| MsG0280007906.01 | MsG0680031009.01 | 0.838796 | 2.324375e-57 | 3.147430e-54 |
| MsG0280007906.01 | MsG0680034317.01 | 0.807758 | 4.321717e-50 | 2.427263e-47 |
| MsG0280007906.01 | MsG0780036472.01 | 0.810109 | 1.357371e-50 | 8.111994e-48 |
| MsG0280007906.01 | MsG0780036661.01 | 0.834200 | 3.439106e-56 | 4.051851e-53 |
| MsG0280007906.01 | MsG0780036925.01 | -0.821012 | 5.061854e-53 | 4.070085e-50 |
| MsG0280007906.01 | MsG0780038963.01 | 0.871674 | 5.708011e-67 | 2.322212e-63 |
| MsG0280007906.01 | MsG0780039576.01 | 0.853503 | 2.289291e-61 | 4.957532e-58 |
| MsG0280007906.01 | MsG0780039978.01 | 0.815861 | 7.441157e-52 | 5.189942e-49 |
| MsG0280007906.01 | MsG0780040615.01 | 0.831446 | 1.661982e-55 | 1.804040e-52 |
| MsG0280007906.01 | MsG0880046856.01 | -0.806752 | 7.062315e-50 | 3.864147e-47 |
| MsG0280007906.01 | MsG0880047251.01 | -0.829043 | 6.419280e-55 | 6.493492e-52 |
| MsG0280007906.01 | MsG0880047542.01 | 0.816853 | 4.464522e-52 | 3.199626e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007906.01.T01 | MTR_2g035100 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 2.90e-109 | 308 |
| MsG0280007906.01.T01 | MTR_2g035105 | 98.089 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 6.47e-108 | 304 |
| MsG0280007906.01.T01 | MTR_2g035130 | 88.535 | 157 | 18 | 0 | 1 | 157 | 1 | 157 | 3.93e-97 | 277 |
| MsG0280007906.01.T01 | MTR_2g035150 | 84.713 | 157 | 24 | 0 | 1 | 157 | 1 | 157 | 2.25e-93 | 268 |
| MsG0280007906.01.T01 | MTR_2g035120 | 83.439 | 157 | 26 | 0 | 1 | 157 | 1 | 157 | 3.53e-93 | 267 |
| MsG0280007906.01.T01 | MTR_6g033450 | 71.975 | 157 | 44 | 0 | 1 | 157 | 1 | 157 | 2.13e-79 | 232 |
| MsG0280007906.01.T01 | MTR_4g120970 | 71.975 | 157 | 44 | 0 | 1 | 157 | 1 | 157 | 2.13e-79 | 232 |
| MsG0280007906.01.T01 | MTR_2g035320 | 65.605 | 157 | 54 | 0 | 1 | 157 | 1 | 157 | 2.81e-69 | 206 |
| MsG0280007906.01.T01 | MTR_2g035190 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 6.19e-66 | 198 |
| MsG0280007906.01.T01 | MTR_2g035210 | 61.146 | 157 | 61 | 0 | 1 | 157 | 1 | 157 | 9.87e-65 | 195 |
| MsG0280007906.01.T01 | MTR_2g035220 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 9.72e-64 | 192 |
| MsG0280007906.01.T01 | MTR_2g035170 | 59.873 | 157 | 63 | 0 | 1 | 157 | 1 | 157 | 4.58e-62 | 188 |
| MsG0280007906.01.T01 | MTR_2g435310 | 40.385 | 156 | 92 | 1 | 1 | 155 | 1 | 156 | 7.90e-39 | 129 |
| MsG0280007906.01.T01 | MTR_2g035320 | 63.542 | 96 | 35 | 0 | 62 | 157 | 27 | 122 | 5.07e-37 | 124 |
| MsG0280007906.01.T01 | MTR_4g120760 | 39.744 | 156 | 93 | 1 | 1 | 155 | 1 | 156 | 1.94e-36 | 123 |
| MsG0280007906.01.T01 | MTR_4g120760 | 39.744 | 156 | 93 | 1 | 1 | 155 | 1 | 156 | 2.21e-36 | 123 |
| MsG0280007906.01.T01 | MTR_4g120950 | 44.720 | 161 | 82 | 5 | 1 | 157 | 1 | 158 | 2.65e-33 | 115 |
| MsG0280007906.01.T01 | MTR_4g120940 | 62.500 | 88 | 30 | 1 | 70 | 157 | 35 | 119 | 2.50e-30 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAAAGTAAGTTTCTTGA+TGG | 0.287513 | 2:-22769276 | None:intergenic |
| AGCTATATGCTTTAGTAATC+AGG | 0.289844 | 2:-22771123 | None:intergenic |
| CCCTTGATTTCCTCTTCACT+TGG | 0.329042 | 2:-22771042 | None:intergenic |
| ATCAATAACCTTTGGGATAA+GGG | 0.353978 | 2:-22769207 | None:intergenic |
| GGATGGCATCAATAACCTTT+GGG | 0.355456 | 2:-22769214 | None:intergenic |
| ACTTGGTGCAGCATCACCTT+TGG | 0.357443 | 2:-22771025 | None:intergenic |
| GAGATCTTCTCCACAGTGTC+TGG | 0.364866 | 2:-22770934 | None:intergenic |
| CTTCAACGATTTCAATACTT+TGG | 0.365905 | 2:-22769235 | None:intergenic |
| TATATCATGTGTGCTTGATT+TGG | 0.367917 | 2:+22771191 | MsG0280007906.01.T01:three_prime_UTR |
| TGGATGGCATCAATAACCTT+TGG | 0.369451 | 2:-22769215 | None:intergenic |
| AAGAAACTTACTTTCGTTGA+AGG | 0.370871 | 2:+22769281 | MsG0280007906.01.T01:CDS |
| GGCTCTTGAAGGTTACGTTT+TGG | 0.372797 | 2:+22771095 | MsG0280007906.01.T01:CDS |
| TATATAATTCATTATTATCA+TGG | 0.373973 | 2:+22769103 | MsG0280007906.01.T01:exon |
| CATCAATAACCTTTGGGATA+AGG | 0.374566 | 2:-22769208 | None:intergenic |
| AGTAAGTTTCTTGATGGTTC+CGG | 0.383147 | 2:-22769270 | None:intergenic |
| CAATCTCACACTTGAGCAAA+AGG | 0.398682 | 2:-22771236 | None:intergenic |
| GCTTACAACTACAGCATAGT+TGG | 0.425478 | 2:+22770898 | MsG0280007906.01.T01:CDS |
| CATGGGTGTATTCAACTTTG+AGG | 0.438572 | 2:+22769121 | MsG0280007906.01.T01:exon |
| AAATCAAGGGTGGCAAAGCT+AGG | 0.448601 | 2:+22771055 | MsG0280007906.01.T01:CDS |
| TTTGAGTCTAAATTGTCTGC+AGG | 0.453113 | 2:+22770958 | MsG0280007906.01.T01:CDS |
| TTTGCAATGGATCCTCCATC+TGG | 0.453770 | 2:-22770982 | None:intergenic |
| CAAAGTATTGAAATCGTTGA+AGG | 0.454502 | 2:+22769236 | MsG0280007906.01.T01:CDS |
| AACGATTTCAATACTTTGGA+TGG | 0.464520 | 2:-22769231 | None:intergenic |
| AGAGCTTTGTAAAGTCTAGC+AGG | 0.480944 | 2:-22769167 | None:intergenic |
| GGTGGCAAAGCTAGGGGTGA+TGG | 0.489081 | 2:+22771063 | MsG0280007906.01.T01:CDS |
| GTATTATTATAATTTATTGA+AGG | 0.489862 | 2:-22771278 | None:intergenic |
| AATCAAGGGTGGCAAAGCTA+GGG | 0.491277 | 2:+22771056 | MsG0280007906.01.T01:CDS |
| ACCAAGTGAAGAGGAAATCA+AGG | 0.498836 | 2:+22771041 | MsG0280007906.01.T01:CDS |
| TTGCTTGCTTGCTTTATACA+TGG | 0.499671 | 2:+22771148 | MsG0280007906.01.T01:three_prime_UTR |
| TGTATGTAACTATTTATATG+TGG | 0.503414 | 2:+22771343 | MsG0280007906.01.T01:three_prime_UTR |
| TACAGCATAGTTGGAGGTGG+TGG | 0.504513 | 2:+22770907 | MsG0280007906.01.T01:CDS |
| TATTATTATAATTTATTGAA+GGG | 0.512183 | 2:-22771277 | None:intergenic |
| ATTGAAATCGTTGAAGGAAA+CGG | 0.515634 | 2:+22769242 | MsG0280007906.01.T01:CDS |
| ATATAATTCATTATTATCAT+GGG | 0.524327 | 2:+22769104 | MsG0280007906.01.T01:exon |
| AAAGTATGATTTGCACAAAG+TGG | 0.527363 | 2:+22770852 | MsG0280007906.01.T01:CDS |
| TTTCACAGTAAGCTTTGCAA+TGG | 0.527944 | 2:-22770995 | None:intergenic |
| TGCAGACAATTTAGACTCAA+AGG | 0.553148 | 2:-22770956 | None:intergenic |
| AAATTGTCTGCAGGGCCAGA+TGG | 0.558648 | 2:+22770967 | MsG0280007906.01.T01:CDS |
| TCTAGCAGGAGCTACAATAG+AGG | 0.562669 | 2:-22769153 | None:intergenic |
| GTTGAAGGAAACGGTGGCGC+CGG | 0.563040 | 2:+22769251 | MsG0280007906.01.T01:CDS |
| TATTATAATTTATTGAAGGG+AGG | 0.566695 | 2:-22771274 | None:intergenic |
| TTCTGATACCCTTATCCCAA+AGG | 0.569991 | 2:+22769199 | MsG0280007906.01.T01:CDS |
| AAGGAAAGAGAGAATTACAT+TGG | 0.571088 | 2:-22771217 | None:intergenic |
| TTGAGTCTAAATTGTCTGCA+GGG | 0.579973 | 2:+22770959 | MsG0280007906.01.T01:CDS |
| TACAACTACAGCATAGTTGG+AGG | 0.596062 | 2:+22770901 | MsG0280007906.01.T01:CDS |
| TGATGCTGCACCAAGTGAAG+AGG | 0.603594 | 2:+22771032 | MsG0280007906.01.T01:CDS |
| TTGTCTGCAGGGCCAGATGG+AGG | 0.618761 | 2:+22770970 | MsG0280007906.01.T01:CDS |
| AACTACAGCATAGTTGGAGG+TGG | 0.623337 | 2:+22770904 | MsG0280007906.01.T01:CDS |
| ATCAAGGGTGGCAAAGCTAG+GGG | 0.634094 | 2:+22771057 | MsG0280007906.01.T01:CDS |
| AGCAGGAGCTACAATAGAGG+TGG | 0.646669 | 2:-22769150 | None:intergenic |
| ACTGTGAAATACTTCACCAA+AGG | 0.653868 | 2:+22771009 | MsG0280007906.01.T01:CDS |
| CCAAGTGAAGAGGAAATCAA+GGG | 0.664848 | 2:+22771042 | MsG0280007906.01.T01:CDS |
| GAAATCGTTGAAGGAAACGG+TGG | 0.695425 | 2:+22769245 | MsG0280007906.01.T01:CDS |
| AGTGAAGAGGAAATCAAGGG+TGG | 0.695634 | 2:+22771045 | MsG0280007906.01.T01:CDS |
| TGGTGGACTTCCAGACACTG+TGG | 0.725966 | 2:+22770924 | MsG0280007906.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATAATAAAAGAAAAG+AGG | - | Chr2:22770655-22770674 | None:intergenic | 10.0% |
| !! | ATATAATTCATTATTATCAT+GGG | + | Chr2:22769104-22769123 | MsG0280007906.01.T01:exon | 10.0% |
| !! | GTATTATTATAATTTATTGA+AGG | - | Chr2:22771281-22771300 | None:intergenic | 10.0% |
| !! | TATATAATTCATTATTATCA+TGG | + | Chr2:22769103-22769122 | MsG0280007906.01.T01:exon | 10.0% |
| !!! | CTTTTAAAAAATAATTTTTC+TGG | - | Chr2:22770589-22770608 | None:intergenic | 10.0% |
| !!! | GTGTTATTAAATATATTTAA+TGG | + | Chr2:22770475-22770494 | MsG0280007906.01.T01:intron | 10.0% |
| !!! | TAAACATTTTATTTTACTTA+GGG | - | Chr2:22769353-22769372 | None:intergenic | 10.0% |
| !!! | TTTTTATACAGTTTTTAAAT+AGG | - | Chr2:22770561-22770580 | None:intergenic | 10.0% |
| !! | AAGATAAATAACATAAATAG+TGG | + | Chr2:22770421-22770440 | MsG0280007906.01.T01:intron | 15.0% |
| !!! | AAAATAAAGAAATGAGTTTT+GGG | + | Chr2:22769486-22769505 | MsG0280007906.01.T01:intron | 15.0% |
| !!! | AAACTACAAATATAAGTTTT+TGG | - | Chr2:22770355-22770374 | None:intergenic | 15.0% |
| !!! | CTAAACATTTTATTTTACTT+AGG | - | Chr2:22769354-22769373 | None:intergenic | 15.0% |
| !!! | TAAAATAAAGAAATGAGTTT+TGG | + | Chr2:22769485-22769504 | MsG0280007906.01.T01:intron | 15.0% |
| !!! | TTGTAGTTTTTTTTTTCTTA+GGG | - | Chr2:22769734-22769753 | None:intergenic | 15.0% |
| !!! | TTTGTAGTTTTTTTTTTCTT+AGG | - | Chr2:22769735-22769754 | None:intergenic | 15.0% |
| !! | AAAATAAAAAACATAACACG+TGG | + | Chr2:22769806-22769825 | MsG0280007906.01.T01:intron | 20.0% |
| !! | ATACCAATGTTATATAACAT+TGG | + | Chr2:22770080-22770099 | MsG0280007906.01.T01:intron | 20.0% |
| !! | CAATGAAATTTCTTAATTAG+AGG | - | Chr2:22769997-22770016 | None:intergenic | 20.0% |
| !! | GAATATTCGATTTAATCTAA+TGG | + | Chr2:22769387-22769406 | MsG0280007906.01.T01:intron | 20.0% |
| !! | TATTATAATTTATTGAAGGG+AGG | - | Chr2:22771277-22771296 | None:intergenic | 20.0% |
| !! | TGATCAATGTTATATAACAT+TGG | + | Chr2:22770186-22770205 | MsG0280007906.01.T01:intron | 20.0% |
| !! | TGTATGTAACTATTTATATG+TGG | + | Chr2:22771343-22771362 | MsG0280007906.01.T01:three_prime_UTR | 20.0% |
| !!! | AGTTTTTAAATAGGCTTATT+TGG | - | Chr2:22770552-22770571 | None:intergenic | 20.0% |
| !!! | CTTGATTTGAGAAAATATTT+TGG | + | Chr2:22769658-22769677 | MsG0280007906.01.T01:intron | 20.0% |
| !!! | TAAATAACATAAATAGTGGA+AGG | + | Chr2:22770425-22770444 | MsG0280007906.01.T01:intron | 20.0% |
| !!! | TATGTGGTTTTCAAATTTTA+AGG | + | Chr2:22771359-22771378 | MsG0280007906.01.T01:three_prime_UTR | 20.0% |
| !!! | TCTAGTTTTTTTTTCTTAGA+GGG | + | Chr2:22769921-22769940 | MsG0280007906.01.T01:intron | 20.0% |
| !!! | TGTAGTTTTTTTTTTCTTAG+GGG | - | Chr2:22769733-22769752 | None:intergenic | 20.0% |
| !!! | TTCTAGTTTTTTTTTCTTAG+AGG | + | Chr2:22769920-22769939 | MsG0280007906.01.T01:intron | 20.0% |
| !!! | TTTTTACCGTAAAACAATAT+GGG | + | Chr2:22770380-22770399 | MsG0280007906.01.T01:intron | 20.0% |
| !!! | TTTTTTACCGTAAAACAATA+TGG | + | Chr2:22770379-22770398 | MsG0280007906.01.T01:intron | 20.0% |
| ! | AACAAGAATCAAACATTTGA+TGG | - | Chr2:22770615-22770634 | None:intergenic | 25.0% |
| ! | ATATAACATTGGTATCTCAA+TGG | - | Chr2:22770075-22770094 | None:intergenic | 25.0% |
| ! | ATTTCTACTTAGCAAAAGTT+TGG | + | Chr2:22770296-22770315 | MsG0280007906.01.T01:intron | 25.0% |
| ! | CTAAAATTGCAAAACTTATG+AGG | - | Chr2:22769762-22769781 | None:intergenic | 25.0% |
| ! | GCAGTGAAATTTCATAATTA+GGG | - | Chr2:22769512-22769531 | None:intergenic | 25.0% |
| ! | TTAATCTAATGGTCATAGAT+GGG | + | Chr2:22769398-22769417 | MsG0280007906.01.T01:intron | 25.0% |
| ! | TTTAATCTAATGGTCATAGA+TGG | + | Chr2:22769397-22769416 | MsG0280007906.01.T01:intron | 25.0% |
| ! | TTTCACAATTACTAACATGA+TGG | - | Chr2:22770804-22770823 | None:intergenic | 25.0% |
| !! | AAACTACAAAGTTGTGATTT+TGG | - | Chr2:22769947-22769966 | None:intergenic | 25.0% |
| !! | AATGTTTAAGACACTACTTA+TGG | + | Chr2:22769621-22769640 | MsG0280007906.01.T01:intron | 25.0% |
| !! | AGATTGTCAATTTTGTACTA+AGG | - | Chr2:22770252-22770271 | None:intergenic | 25.0% |
| !!! | GTAGTTTTTTTTTTCTTAGG+GGG | - | Chr2:22769732-22769751 | None:intergenic | 25.0% |
| !!! | TTGTTTCCCATATTGTTTTA+CGG | - | Chr2:22770389-22770408 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTTTGCCCTTGT+GGG | - | Chr2:22769795-22769814 | None:intergenic | 25.0% |
| !!! | TTTTGCAATTTTAGCAGTAT+TGG | + | Chr2:22769768-22769787 | MsG0280007906.01.T01:intron | 25.0% |
| !!! | TTTTTATTTTTTTGCCCTTG+TGG | - | Chr2:22769796-22769815 | None:intergenic | 25.0% |
| AAATTGCAAAACTTATGAGG+CGG | - | Chr2:22769759-22769778 | None:intergenic | 30.0% | |
| AACGAAAGTAAGTTTCTTGA+TGG | - | Chr2:22769279-22769298 | None:intergenic | 30.0% | |
| AACGATTTCAATACTTTGGA+TGG | - | Chr2:22769234-22769253 | None:intergenic | 30.0% | |
| AAGAAACTTACTTTCGTTGA+AGG | + | Chr2:22769281-22769300 | MsG0280007906.01.T01:CDS | 30.0% | |
| AAGGAAAGAGAGAATTACAT+TGG | - | Chr2:22771220-22771239 | None:intergenic | 30.0% | |
| AGCTATATGCTTTAGTAATC+AGG | - | Chr2:22771126-22771145 | None:intergenic | 30.0% | |
| ATACATGTGAAAAATTGACG+TGG | + | Chr2:22769311-22769330 | MsG0280007906.01.T01:intron | 30.0% | |
| ATATAACATTGGTATCCCAA+TGG | + | Chr2:22770197-22770216 | MsG0280007906.01.T01:intron | 30.0% | |
| ATTGAAATCGTTGAAGGAAA+CGG | + | Chr2:22769242-22769261 | MsG0280007906.01.T01:CDS | 30.0% | |
| CGCAGTGAAATTTCATAATT+AGG | - | Chr2:22769513-22769532 | None:intergenic | 30.0% | |
| CTTCAACGATTTCAATACTT+TGG | - | Chr2:22769238-22769257 | None:intergenic | 30.0% | |
| TATATCATGTGTGCTTGATT+TGG | + | Chr2:22771191-22771210 | MsG0280007906.01.T01:three_prime_UTR | 30.0% | |
| TGGCCAATGTTATATAACAT+TGG | - | Chr2:22770086-22770105 | None:intergenic | 30.0% | |
| ! | AAAGTATGATTTGCACAAAG+TGG | + | Chr2:22770852-22770871 | MsG0280007906.01.T01:CDS | 30.0% |
| !! | ATCAATAACCTTTGGGATAA+GGG | - | Chr2:22769210-22769229 | None:intergenic | 30.0% |
| !! | CAAAGTATTGAAATCGTTGA+AGG | + | Chr2:22769236-22769255 | MsG0280007906.01.T01:CDS | 30.0% |
| !!! | TTTATTTTTTTGCCCTTGTG+GGG | - | Chr2:22769794-22769813 | None:intergenic | 30.0% |
| AAAGACCTAATTGAACCAAG+TGG | + | Chr2:22770774-22770793 | MsG0280007906.01.T01:intron | 35.0% | |
| ACTGTGAAATACTTCACCAA+AGG | + | Chr2:22771009-22771028 | MsG0280007906.01.T01:CDS | 35.0% | |
| CTTCTTTAGACTTTCCTATG+TGG | + | Chr2:22770152-22770171 | MsG0280007906.01.T01:intron | 35.0% | |
| GAAACGAATCAATTATGTGC+AGG | + | Chr2:22770820-22770839 | MsG0280007906.01.T01:intron | 35.0% | |
| GATATGTTGCACATCTTCAT+TGG | - | Chr2:22770106-22770125 | None:intergenic | 35.0% | |
| GTCGATATAGCAAATTGGTA+GGG | - | Chr2:22770040-22770059 | None:intergenic | 35.0% | |
| TCAATGAAGATGTACCACAT+AGG | - | Chr2:22770169-22770188 | None:intergenic | 35.0% | |
| TGCAGACAATTTAGACTCAA+AGG | - | Chr2:22770959-22770978 | None:intergenic | 35.0% | |
| TGTCGATATAGCAAATTGGT+AGG | - | Chr2:22770041-22770060 | None:intergenic | 35.0% | |
| TTGAGTCTAAATTGTCTGCA+GGG | + | Chr2:22770959-22770978 | MsG0280007906.01.T01:CDS | 35.0% | |
| TTGCTTGCTTGCTTTATACA+TGG | + | Chr2:22771148-22771167 | MsG0280007906.01.T01:three_prime_UTR | 35.0% | |
| TTTCACAGTAAGCTTTGCAA+TGG | - | Chr2:22770998-22771017 | None:intergenic | 35.0% | |
| TTTGAGTCTAAATTGTCTGC+AGG | + | Chr2:22770958-22770977 | MsG0280007906.01.T01:CDS | 35.0% | |
| ! | AGTAAGTTTCTTGATGGTTC+CGG | - | Chr2:22769273-22769292 | None:intergenic | 35.0% |
| ! | TTTTGCACATGTGGCATTTT+TGG | - | Chr2:22769886-22769905 | None:intergenic | 35.0% |
| !! | CATCAATAACCTTTGGGATA+AGG | - | Chr2:22769211-22769230 | None:intergenic | 35.0% |
| ACCAAGTGAAGAGGAAATCA+AGG | + | Chr2:22771041-22771060 | MsG0280007906.01.T01:CDS | 40.0% | |
| ACGAATCAATTATGTGCAGG+TGG | + | Chr2:22770823-22770842 | MsG0280007906.01.T01:intron | 40.0% | |
| AGACTGAGTCAAAATTGGTC+TGG | + | Chr2:22769857-22769876 | MsG0280007906.01.T01:intron | 40.0% | |
| AGCGTAGACTGAGTCAAAAT+TGG | + | Chr2:22769852-22769871 | MsG0280007906.01.T01:intron | 40.0% | |
| ATCGCAACTTCGTGAAAGTT+AGG | - | Chr2:22769704-22769723 | None:intergenic | 40.0% | |
| ATGCCACATGTGCAAAACTT+AGG | + | Chr2:22769889-22769908 | MsG0280007906.01.T01:intron | 40.0% | |
| CAATCTCACACTTGAGCAAA+AGG | - | Chr2:22771239-22771258 | None:intergenic | 40.0% | |
| CATGGGTGTATTCAACTTTG+AGG | + | Chr2:22769121-22769140 | MsG0280007906.01.T01:exon | 40.0% | |
| CCAAGTGAAGAGGAAATCAA+GGG | + | Chr2:22771042-22771061 | MsG0280007906.01.T01:CDS | 40.0% | |
| GAAACCACTTGTGTACCATT+GGG | - | Chr2:22770215-22770234 | None:intergenic | 40.0% | |
| GACATCCACTTGGTTCAATT+AGG | - | Chr2:22770782-22770801 | None:intergenic | 40.0% | |
| GCTTACAACTACAGCATAGT+TGG | + | Chr2:22770898-22770917 | MsG0280007906.01.T01:CDS | 40.0% | |
| GGATGGCATCAATAACCTTT+GGG | - | Chr2:22769217-22769236 | None:intergenic | 40.0% | |
| GTATCTCAATGGTACACAAG+TGG | - | Chr2:22770064-22770083 | None:intergenic | 40.0% | |
| GTGCAACATATCACTTCACA+TGG | + | Chr2:22770114-22770133 | MsG0280007906.01.T01:intron | 40.0% | |
| TACAACTACAGCATAGTTGG+AGG | + | Chr2:22770901-22770920 | MsG0280007906.01.T01:CDS | 40.0% | |
| TACTAAGGACCTTTAGCGTA+CGG | - | Chr2:22770237-22770256 | None:intergenic | 40.0% | |
| TCGCAACTTCGTGAAAGTTA+GGG | - | Chr2:22769703-22769722 | None:intergenic | 40.0% | |
| TGCCACATGTGCAAAACTTA+GGG | + | Chr2:22769890-22769909 | MsG0280007906.01.T01:intron | 40.0% | |
| TGGATGGCATCAATAACCTT+TGG | - | Chr2:22769218-22769237 | None:intergenic | 40.0% | |
| TGTTGAGAGTAATCTCATCG+TGG | - | Chr2:22770324-22770343 | None:intergenic | 40.0% | |
| TTCTGATACCCTTATCCCAA+AGG | + | Chr2:22769199-22769218 | MsG0280007906.01.T01:CDS | 40.0% | |
| ! | ACTGAGTCAAAATTGGTCTG+GGG | + | Chr2:22769859-22769878 | MsG0280007906.01.T01:intron | 40.0% |
| ! | AGAGCTTTGTAAAGTCTAGC+AGG | - | Chr2:22769170-22769189 | None:intergenic | 40.0% |
| ! | CTTTCACGAAGTTGCGATTT+TGG | + | Chr2:22769706-22769725 | MsG0280007906.01.T01:intron | 40.0% |
| ! | GACTGAGTCAAAATTGGTCT+GGG | + | Chr2:22769858-22769877 | MsG0280007906.01.T01:intron | 40.0% |
| !! | GTGGTGTCGATATAGCAAAT+TGG | - | Chr2:22770045-22770064 | None:intergenic | 40.0% |
| !! | TAACATGATGGACATCCACT+TGG | - | Chr2:22770792-22770811 | None:intergenic | 40.0% |
| AAATCAAGGGTGGCAAAGCT+AGG | + | Chr2:22771055-22771074 | MsG0280007906.01.T01:CDS | 45.0% | |
| AACTACAGCATAGTTGGAGG+TGG | + | Chr2:22770904-22770923 | MsG0280007906.01.T01:CDS | 45.0% | |
| AAGTGGTTTCCGTACGCTAA+AGG | + | Chr2:22770225-22770244 | MsG0280007906.01.T01:intron | 45.0% | |
| AATCAAGGGTGGCAAAGCTA+GGG | + | Chr2:22771056-22771075 | MsG0280007906.01.T01:CDS | 45.0% | |
| AGTGAAGAGGAAATCAAGGG+TGG | + | Chr2:22771045-22771064 | MsG0280007906.01.T01:CDS | 45.0% | |
| AGTGGAAGGCAACAAAGCAA+GGG | + | Chr2:22770439-22770458 | MsG0280007906.01.T01:intron | 45.0% | |
| CCACATGTGCAAAACTTAGG+GGG | + | Chr2:22769892-22769911 | MsG0280007906.01.T01:intron | 45.0% | |
| CCCTTGATTTCCTCTTCACT+TGG | - | Chr2:22771045-22771064 | None:intergenic | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+GGG | - | Chr2:22769702-22769721 | None:intergenic | 45.0% | |
| GAAATCGTTGAAGGAAACGG+TGG | + | Chr2:22769245-22769264 | MsG0280007906.01.T01:CDS | 45.0% | |
| GCAACTTCGTGAAAGTTAGG+GGG | - | Chr2:22769701-22769720 | None:intergenic | 45.0% | |
| GCCACATGTGCAAAACTTAG+GGG | + | Chr2:22769891-22769910 | MsG0280007906.01.T01:intron | 45.0% | |
| GGAAACCACTTGTGTACCAT+TGG | - | Chr2:22770216-22770235 | None:intergenic | 45.0% | |
| GTATCCCAATGGTACACAAG+TGG | + | Chr2:22770208-22770227 | MsG0280007906.01.T01:intron | 45.0% | |
| TAGTGGAAGGCAACAAAGCA+AGG | + | Chr2:22770438-22770457 | MsG0280007906.01.T01:intron | 45.0% | |
| TCTAGCAGGAGCTACAATAG+AGG | - | Chr2:22769156-22769175 | None:intergenic | 45.0% | |
| TTTGCAATGGATCCTCCATC+TGG | - | Chr2:22770985-22771004 | None:intergenic | 45.0% | |
| ! | GGCTCTTGAAGGTTACGTTT+TGG | + | Chr2:22771095-22771114 | MsG0280007906.01.T01:CDS | 45.0% |
| !! | GGTCTTTTCAAGGCTCTTGA+AGG | + | Chr2:22771084-22771103 | MsG0280007906.01.T01:CDS | 45.0% |
| !! | TAGGGGTGATGGTCTTTTCA+AGG | + | Chr2:22771074-22771093 | MsG0280007906.01.T01:CDS | 45.0% |
| !! | TATTATTATAATTTATTGAA+GGG | - | Chr2:22771280-22771299 | None:intergenic | 5.0% |
| !!! | CTTTTATTATATATTAATAT+TGG | + | Chr2:22770660-22770679 | MsG0280007906.01.T01:intron | 5.0% |
| !!! | TTTTTATATAATTTTTTTGT+GGG | + | Chr2:22770700-22770719 | MsG0280007906.01.T01:intron | 5.0% |
| !!! | TTTTTCTATAAATAATTTAT+TGG | + | Chr2:22769447-22769466 | MsG0280007906.01.T01:intron | 5.0% |
| !!! | TTTTTTATATAATTTTTTTG+TGG | + | Chr2:22770699-22770718 | MsG0280007906.01.T01:intron | 5.0% |
| AAATTGTCTGCAGGGCCAGA+TGG | + | Chr2:22770967-22770986 | MsG0280007906.01.T01:CDS | 50.0% | |
| AACACGTGGCACCTCACTTA+GGG | + | Chr2:22769820-22769839 | MsG0280007906.01.T01:intron | 50.0% | |
| AGCAGGAGCTACAATAGAGG+TGG | - | Chr2:22769153-22769172 | None:intergenic | 50.0% | |
| ATCAAGGGTGGCAAAGCTAG+GGG | + | Chr2:22771057-22771076 | MsG0280007906.01.T01:CDS | 50.0% | |
| CATGTGCAAAACTTAGGGGG+CGG | + | Chr2:22769895-22769914 | MsG0280007906.01.T01:intron | 50.0% | |
| GAGATCTTCTCCACAGTGTC+TGG | - | Chr2:22770937-22770956 | None:intergenic | 50.0% | |
| TAACACGTGGCACCTCACTT+AGG | + | Chr2:22769819-22769838 | MsG0280007906.01.T01:intron | 50.0% | |
| TACAGCATAGTTGGAGGTGG+TGG | + | Chr2:22770907-22770926 | MsG0280007906.01.T01:CDS | 50.0% | |
| TGATGCTGCACCAAGTGAAG+AGG | + | Chr2:22771032-22771051 | MsG0280007906.01.T01:CDS | 50.0% | |
| ! | CCCCCTAAGTTTTGCACATG+TGG | - | Chr2:22769895-22769914 | None:intergenic | 50.0% |
| !! | ACTTGGTGCAGCATCACCTT+TGG | - | Chr2:22771028-22771047 | None:intergenic | 50.0% |
| !! | TAGCAGTATTGGCCCCACAA+GGG | + | Chr2:22769779-22769798 | MsG0280007906.01.T01:intron | 50.0% |
| !! | TTAGCAGTATTGGCCCCACA+AGG | + | Chr2:22769778-22769797 | MsG0280007906.01.T01:intron | 50.0% |
| CTGACGTGGTACCCTAAGTG+AGG | - | Chr2:22769834-22769853 | None:intergenic | 55.0% | |
| TGACTCAGTCTACGCTGACG+TGG | - | Chr2:22769848-22769867 | None:intergenic | 55.0% | |
| !! | TGGTGGACTTCCAGACACTG+TGG | + | Chr2:22770924-22770943 | MsG0280007906.01.T01:CDS | 55.0% |
| GGTGGCAAAGCTAGGGGTGA+TGG | + | Chr2:22771063-22771082 | MsG0280007906.01.T01:CDS | 60.0% | |
| GTTGAAGGAAACGGTGGCGC+CGG | + | Chr2:22769251-22769270 | MsG0280007906.01.T01:CDS | 60.0% | |
| TTGTCTGCAGGGCCAGATGG+AGG | + | Chr2:22770970-22770989 | MsG0280007906.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 22769049 | 22771397 | 22769049 | ID=MsG0280007906.01;Name=MsG0280007906.01 |
| Chr2 | mRNA | 22769049 | 22771397 | 22769049 | ID=MsG0280007906.01.T01;Parent=MsG0280007906.01;Name=MsG0280007906.01.T01;_AED=0.49;_eAED=0.49;_QI=73|1|1|1|1|1|2|263|157 |
| Chr2 | exon | 22769049 | 22769302 | 22769049 | ID=MsG0280007906.01.T01:exon:13866;Parent=MsG0280007906.01.T01 |
| Chr2 | exon | 22770842 | 22771397 | 22770842 | ID=MsG0280007906.01.T01:exon:13867;Parent=MsG0280007906.01.T01 |
| Chr2 | five_prime_UTR | 22769049 | 22769121 | 22769049 | ID=MsG0280007906.01.T01:five_prime_utr;Parent=MsG0280007906.01.T01 |
| Chr2 | CDS | 22769122 | 22769302 | 22769122 | ID=MsG0280007906.01.T01:cds;Parent=MsG0280007906.01.T01 |
| Chr2 | CDS | 22770842 | 22771134 | 22770842 | ID=MsG0280007906.01.T01:cds;Parent=MsG0280007906.01.T01 |
| Chr2 | three_prime_UTR | 22771135 | 22771397 | 22771135 | ID=MsG0280007906.01.T01:three_prime_utr;Parent=MsG0280007906.01.T01 |
| Gene Sequence |
| Protein sequence |
