AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029881.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029881.01.T01 MTR_5g094160 88.000 700 65 5 1 686 1 695 0.0 1222
MsG0580029881.01.T01 MTR_5g098130 62.742 671 244 5 1 671 1 665 0.0 828
MsG0580029881.01.T01 MTR_8g011460 60.784 612 230 5 1 608 1 606 0.0 740
MsG0580029881.01.T01 MTR_7g052820 61.803 610 229 3 1 608 1 608 0.0 740
MsG0580029881.01.T01 MTR_5g098130 62.525 491 181 3 1 491 1 488 0.0 609
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029881.01.T01 AT4G26700 62.828 686 238 6 1 673 1 682 0.0 838
MsG0580029881.01.T01 AT4G26700 62.828 686 238 6 1 673 1 682 0.0 838
MsG0580029881.01.T01 AT4G26700 62.828 686 238 6 1 673 1 682 0.0 838
MsG0580029881.01.T01 AT5G55400 61.119 697 238 9 1 672 1 689 0.0 828
MsG0580029881.01.T01 AT5G55400 61.119 697 238 9 1 672 1 689 0.0 828
MsG0580029881.01.T01 AT5G55400 61.119 697 238 9 1 672 1 689 0.0 828
MsG0580029881.01.T01 AT5G35700 59.971 682 248 7 1 673 1 666 0.0 801
MsG0580029881.01.T01 AT4G26700 66.087 575 192 3 1 575 1 572 0.0 765
MsG0580029881.01.T01 AT4G26700 66.087 575 192 3 1 575 1 572 0.0 765
MsG0580029881.01.T01 AT4G26700 66.087 575 192 3 1 575 1 572 0.0 765
MsG0580029881.01.T01 AT2G04750 58.420 671 257 7 1 668 1 652 0.0 758
MsG0580029881.01.T01 AT5G48460 56.018 673 273 7 1 670 1 653 0.0 726
MsG0580029881.01.T01 AT4G26700 64.162 519 169 6 168 673 19 533 0.0 647

Find 129 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCACATTCAGAGCTTTA+AGG 0.159596 5:-103325961 MsG0580029881.01.T01:intron
TTTCTAAATGGCATTCTAAT+TGG 0.198379 5:+103326400 None:intergenic
GTGATGCTGATATTCTTAAA+TGG 0.216833 5:-103326016 MsG0580029881.01.T01:CDS
TGTTTCCAGTTAACCGATTC+AGG 0.221059 5:+103326436 None:intergenic
TTGCAGCCTCATCTGGTTCT+AGG 0.222382 5:-103328663 MsG0580029881.01.T01:intron
CAAAACGAAATCTTTCTCTT+TGG 0.257305 5:-103328879 MsG0580029881.01.T01:CDS
GTCAAGTGGACTCTTCTTCC+TGG 0.297646 5:-103325821 MsG0580029881.01.T01:CDS
ATCCTCAGGTAACAAATATA+TGG 0.304430 5:+103325308 None:intergenic
GAAAGTTATTCATCCCTTAA+TGG 0.306011 5:-103325011 MsG0580029881.01.T01:CDS
AAAACGAAATCTTTCTCTTT+GGG 0.307791 5:-103328878 MsG0580029881.01.T01:CDS
TCCCCTGCCCCTTCCGTTTG+TGG 0.309435 5:-103325041 MsG0580029881.01.T01:CDS
CACAAGATTTGCTCTTTCAT+TGG 0.321474 5:+103327014 None:intergenic
TCTTCACAACTTGAATTTGA+TGG 0.329624 5:-103324939 MsG0580029881.01.T01:CDS
CCGAATTGAGGCATAAAGTA+TGG 0.336659 5:+103328842 None:intergenic
GGAAATAAGAAGCTCATTCT+TGG 0.337857 5:-103326292 MsG0580029881.01.T01:intron
GGAAGGGGCAGGGGAAGCTT+CGG 0.342813 5:+103325049 None:intergenic
CTTGAGTCAATATCTTCCTT+TGG 0.350286 5:-103329103 MsG0580029881.01.T01:CDS
CACTTTGACCCTTGGTAACT+AGG 0.354139 5:+103325758 None:intergenic
CTCAATTCGGCTAAGGCTAT+TGG 0.354276 5:-103328829 MsG0580029881.01.T01:CDS
GTTTATGTTGCAGCCTCATC+TGG 0.356121 5:-103328670 MsG0580029881.01.T01:intron
GTACAGTGAAGATGAGATTA+GGG 0.357196 5:-103330141 MsG0580029881.01.T01:CDS
CATCACTTATCTCCTTTCCT+TGG 0.359853 5:+103326033 None:intergenic
TTTGTTACCTGAGGATATTA+TGG 0.372370 5:-103325301 MsG0580029881.01.T01:CDS
TGTACAGTGAAGATGAGATT+AGG 0.373898 5:-103330142 MsG0580029881.01.T01:CDS
CTATTTGATCTTTCAAAAGA+TGG 0.374761 5:-103329063 MsG0580029881.01.T01:CDS
CTTATCAATGTTGCTGTGCC+TGG 0.375092 5:-103328928 MsG0580029881.01.T01:CDS
GAAGGGGCAGGGGAAGCTTC+GGG 0.377533 5:+103325050 None:intergenic
ATCACTTATCTCCTTTCCTT+GGG 0.393063 5:+103326034 None:intergenic
GTTGATTTCTCAAATCATAA+AGG 0.401124 5:-103328640 MsG0580029881.01.T01:intron
GTGGCTGGACTGCAATGTTC+AGG 0.408374 5:+103327054 None:intergenic
CACGATTAGCGGATCAGAAA+AGG 0.409153 5:-103329172 MsG0580029881.01.T01:CDS
CTCCTTGTTTCGTTGTAGCT+TGG 0.413139 5:+103329247 None:intergenic
CAGAATGGTAAAGTTACATA+TGG 0.418490 5:-103330209 MsG0580029881.01.T01:CDS
TACCAAGATGTCAAAATTTG+AGG 0.425052 5:-103330435 None:intergenic
GAAGTTCAACCTGTGTAAAC+TGG 0.425063 5:+103330381 None:intergenic
CTATTTGAGGATGTCAGAAA+TGG 0.430841 5:-103326642 MsG0580029881.01.T01:CDS
CATCTTAGTAGAACCTTGTC+AGG 0.432812 5:+103328223 None:intergenic
GGGTGGTTATGCTTTCGTTA+AGG 0.441687 5:+103329202 None:intergenic
TGATGCTGATATTCTTAAAT+GGG 0.441756 5:-103326015 MsG0580029881.01.T01:CDS
TCGTGTAAATAATCTATTTG+AGG 0.443027 5:-103326655 MsG0580029881.01.T01:CDS
TAGAGCCAAGGGTTGTCAAT+TGG 0.447407 5:-103325783 MsG0580029881.01.T01:CDS
TTTAGCTTCATCATTAAAGA+TGG 0.450321 5:+103330179 None:intergenic
ACTTTCATCTTCACCACAAA+CGG 0.455623 5:+103325028 None:intergenic
CTGACAAGGTTCTACTAAGA+TGG 0.458366 5:-103328222 MsG0580029881.01.T01:CDS
CTAAATGGCATTCTAATTGG+AGG 0.460061 5:+103326403 None:intergenic
TCGTTGTCTTCGTCTGTTGT+TGG 0.464042 5:+103325113 None:intergenic
TCACCACAAACGGAAGGGGC+AGG 0.469547 5:+103325038 None:intergenic
ACCCTTCTTCACACGATTAG+CGG 0.469956 5:-103329183 MsG0580029881.01.T01:CDS
TGCAGCCTCATCTGGTTCTA+GGG 0.470551 5:-103328662 MsG0580029881.01.T01:intron
AAATGCAAGATTAAGATTTG+AGG 0.473328 5:+103326927 None:intergenic
ACCACAAACGGAAGGGGCAG+GGG 0.475123 5:+103325040 None:intergenic
ATCCGCTAATCGTGTGAAGA+AGG 0.478962 5:+103329181 None:intergenic
TAACATTGGCGCACAAGACT+TGG 0.479565 5:-103328794 MsG0580029881.01.T01:CDS
AACAGAAAAGTGAATAGCAT+TGG 0.480035 5:-103325990 MsG0580029881.01.T01:CDS
CCATACTTTATGCCTCAATT+CGG 0.482478 5:-103328842 MsG0580029881.01.T01:CDS
TCGCTCAATTATTTCATCAC+AGG 0.484806 5:-103326903 MsG0580029881.01.T01:intron
GGAAGATATTGACTCAAGAA+TGG 0.484838 5:+103329108 None:intergenic
TGAATCGGTTAACTGGAAAC+AGG 0.485665 5:-103326434 MsG0580029881.01.T01:CDS
ATCAGTGTCGCACGAAAGCT+TGG 0.486279 5:-103325336 MsG0580029881.01.T01:CDS
TTGCAGCCAGTATAATGTAT+TGG 0.489064 5:-103325141 MsG0580029881.01.T01:intron
AAACATACCACTTTGACCCT+TGG 0.491256 5:+103325750 None:intergenic
AGGGGAAGCTTCGGGTGTGT+TGG 0.494209 5:+103325058 None:intergenic
ATTGGCATCTTTAGTATCCA+AGG 0.497711 5:+103327032 None:intergenic
CAGAAAGAATGGGCTGCAAA+AGG 0.498410 5:-103326981 MsG0580029881.01.T01:CDS
ACCAAGATGTCAAAATTTGA+GGG 0.500673 5:-103330434 None:intergenic
TCAAATAGATCATTTGTAGC+TGG 0.510329 5:+103329078 None:intergenic
TGCGACACTGATTATGTAAG+TGG 0.514332 5:+103325347 None:intergenic
GGTATCATCAACACTCAAGT+TGG 0.515488 5:+103324980 None:intergenic
GGCGCACAAGACTTGGTTGA+CGG 0.518448 5:-103328787 MsG0580029881.01.T01:CDS
CACCACAAACGGAAGGGGCA+GGG 0.520815 5:+103325039 None:intergenic
TTCTCAGTGCAGTAGAGCCA+AGG 0.523939 5:-103325795 MsG0580029881.01.T01:CDS
GCTTGAGCATGCAGAAAGAA+TGG 0.525075 5:-103326992 MsG0580029881.01.T01:CDS
AGGTTCCAATTGACAACCCT+TGG 0.526371 5:+103325778 None:intergenic
TCTTAATTTGTCTCCTGACA+AGG 0.530133 5:-103328236 MsG0580029881.01.T01:CDS
TTCCATATATTTGTTACCTG+AGG 0.531885 5:-103325310 MsG0580029881.01.T01:CDS
ATCTTTAATGATGAAGCTAA+AGG 0.533344 5:-103330177 MsG0580029881.01.T01:CDS
ATTAAGATTTGAGGTTCCCT+CGG 0.539291 5:+103326936 None:intergenic
TCTTTAGTATCCAAGGTGGC+TGG 0.540347 5:+103327039 None:intergenic
TTTATGCCTCAATTCGGCTA+AGG 0.541053 5:-103328836 MsG0580029881.01.T01:CDS
ACGATTAGCGGATCAGAAAA+GGG 0.542026 5:-103329171 MsG0580029881.01.T01:CDS
TATTTGAGGATGTCAGAAAT+GGG 0.544161 5:-103326641 MsG0580029881.01.T01:CDS
AAGAGAGATGCTTTAGAATG+TGG 0.544875 5:-103326701 MsG0580029881.01.T01:CDS
ATCTTCACCACAAACGGAAG+GGG 0.546488 5:+103325034 None:intergenic
TTATCAATGTTGCTGTGCCT+GGG 0.546584 5:-103328927 MsG0580029881.01.T01:CDS
GAGATCTCATTCCCAAGGAA+AGG 0.547069 5:-103326045 MsG0580029881.01.T01:CDS
GGATGCACAGTTGTTAACAT+TGG 0.549678 5:-103328808 MsG0580029881.01.T01:CDS
CAAAAGATGGCATTCTTCTG+TGG 0.549711 5:-103329050 MsG0580029881.01.T01:intron
CAATAGCCTTAGCCGAATTG+AGG 0.553192 5:+103328830 None:intergenic
GACTGCAATGTTCAGGAGCA+AGG 0.557987 5:+103327061 None:intergenic
GTGAGAGTGCTAGCAGGTGA+AGG 0.567234 5:+103325083 None:intergenic
TATACCTCCATAATATCCTC+AGG 0.569641 5:+103325294 None:intergenic
TCATCTTCACCACAAACGGA+AGG 0.570006 5:+103325032 None:intergenic
TCTCAGTGCAGTAGAGCCAA+GGG 0.573854 5:-103325794 MsG0580029881.01.T01:CDS
ACATTGCAGTCCAGCCACCT+TGG 0.573939 5:-103327049 MsG0580029881.01.T01:CDS
CTTGAGCATGCAGAAAGAAT+GGG 0.573945 5:-103326991 MsG0580029881.01.T01:CDS
CATCTTCACCACAAACGGAA+GGG 0.574029 5:+103325033 None:intergenic
GCTCGCTCGTCTATAGTCCC+AGG 0.575614 5:+103328910 None:intergenic
TGCAATCAAGTCATAAGAGT+CGG 0.575866 5:-103326367 MsG0580029881.01.T01:CDS
GCTCACATAAACAGCTACCT+TGG 0.577283 5:-103329138 MsG0580029881.01.T01:CDS
GAATTTGATGGCGTTGCCGT+CGG 0.586421 5:-103324927 MsG0580029881.01.T01:CDS
TCATTTGTAGCTGGATCCAA+AGG 0.600205 5:+103329087 None:intergenic
AGAGACTGTTGTATCAGAAG+TGG 0.603731 5:+103324959 None:intergenic
TCCGCTAATCGTGTGAAGAA+GGG 0.603800 5:+103329182 None:intergenic
AACCAAGCTACAACGAAACA+AGG 0.604034 5:-103329249 MsG0580029881.01.T01:CDS
GCTTTCGTTAAGGAATGATG+AGG 0.604252 5:+103329212 None:intergenic
GCTTCAAAGCCAGTTTACAC+AGG 0.605203 5:-103330390 MsG0580029881.01.T01:CDS
TATATATTTACAGGATGCAG+AGG 0.606274 5:-103327106 MsG0580029881.01.T01:intron
ATCTGAAATTACCAGTAGAG+TGG 0.608513 5:+103328466 None:intergenic
AATTTGAGATCTCATTCCCA+AGG 0.610970 5:-103326050 MsG0580029881.01.T01:CDS
GCAAAAGGTACTTGAGCACA+AGG 0.612195 5:-103326966 MsG0580029881.01.T01:CDS
TTGGTAGTGAGAGTGCTAGC+AGG 0.614552 5:+103325077 None:intergenic
CTACTGCACTGAGAAGCTCC+AGG 0.616153 5:+103325803 None:intergenic
GTTACCTGAGGATATTATGG+AGG 0.617888 5:-103325298 MsG0580029881.01.T01:intron
CAATTGGAACCTAGTTACCA+AGG 0.625122 5:-103325767 MsG0580029881.01.T01:CDS
TCAAAATAACTCATCACCGA+CGG 0.632299 5:+103324911 None:intergenic
CAGGATAAGAGCTTGTCAAG+TGG 0.634181 5:-103325835 MsG0580029881.01.T01:CDS
ATCAACCCTAGAACCAGATG+AGG 0.645171 5:+103328657 None:intergenic
CTAGTTACCAAGGGTCAAAG+TGG 0.646174 5:-103325757 MsG0580029881.01.T01:intron
GCTAATCGTGTGAAGAAGGG+TGG 0.662528 5:+103329185 None:intergenic
AATTGGAACCTAGTTACCAA+GGG 0.672164 5:-103325766 MsG0580029881.01.T01:CDS
TACAGTGAAGATGAGATTAG+GGG 0.672715 5:-103330140 MsG0580029881.01.T01:CDS
AGCACAAGGGACATTACCGA+GGG 0.673380 5:-103326952 MsG0580029881.01.T01:CDS
GAGCACAAGGGACATTACCG+AGG 0.674381 5:-103326953 MsG0580029881.01.T01:CDS
ACAGTGAAGATGAGATTAGG+GGG 0.681059 5:-103330139 MsG0580029881.01.T01:CDS
GCTGGCAATGATATTGTGCA+AGG 0.690463 5:-103326313 MsG0580029881.01.T01:CDS
GGCATCTTTAGTATCCAAGG+TGG 0.710629 5:+103327035 None:intergenic
TCAAGAATGGATCATCACCA+AGG 0.724787 5:+103329121 None:intergenic
CAAAAGGTACTTGAGCACAA+GGG 0.747889 5:-103326965 MsG0580029881.01.T01:CDS
CAAGCTACAACGAAACAAGG+AGG 0.764617 5:-103329246 MsG0580029881.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAACTATCTTATAATTTTT+TGG - Chr5:103328054-103328073 MsG0580029881.01.T01:intron 10.0%
!!! TTTTTACTAATGAAAATATT+CGG + Chr5:103327576-103327595 None:intergenic 10.0%
!! AGTTCTTAAGTTATTTAATT+AGG - Chr5:103328525-103328544 MsG0580029881.01.T01:CDS 15.0%
!! GTTCTTAAGTTATTTAATTA+GGG - Chr5:103328526-103328545 MsG0580029881.01.T01:CDS 15.0%
!!! AATAAAGGTAGATTTTTATT+AGG - Chr5:103327750-103327769 MsG0580029881.01.T01:intron 15.0%
!!! AATAACTTACTTTTGATTTA+AGG + Chr5:103324988-103325007 None:intergenic 15.0%
!!! ATGGATTAATAATAGTTTAT+GGG - Chr5:103329854-103329873 MsG0580029881.01.T01:intron 15.0%
!!! GACATAATTTGTTTTATTAT+AGG - Chr5:103326793-103326812 MsG0580029881.01.T01:intron 15.0%
!!! TTTAACAACATTTTATGATT+AGG - Chr5:103327225-103327244 MsG0580029881.01.T01:intron 15.0%
!! AAAAAGCAGGATATATAAAA+AGG - Chr5:103327591-103327610 MsG0580029881.01.T01:intron 20.0%
!! AAAAGAAATCAAACACATTA+AGG + Chr5:103328834-103328853 None:intergenic 20.0%
!! AAAAGCAGGATATATAAAAA+GGG - Chr5:103327592-103327611 MsG0580029881.01.T01:intron 20.0%
!! AAATGTCGACAAAATATTAT+AGG + Chr5:103326608-103326627 None:intergenic 20.0%
!! AATAACTTCTGCAATTATAT+TGG + Chr5:103327646-103327665 None:intergenic 20.0%
!! AATATAATTGCAGAAGTTAT+TGG - Chr5:103327645-103327664 MsG0580029881.01.T01:intron 20.0%
!! AATGTCGACAAAATATTATA+GGG + Chr5:103326607-103326626 None:intergenic 20.0%
!! CAAAAATATTAGAGAAAAGA+TGG - Chr5:103325691-103325710 MsG0580029881.01.T01:intron 20.0%
!! CTTTCAAATGATTAGAATTT+CGG - Chr5:103325623-103325642 MsG0580029881.01.T01:intron 20.0%
!! TAAAATTAAAACCTTTGACT+TGG + Chr5:103325845-103325864 None:intergenic 20.0%
!! TTATTGTTCTAGTATATTTG+AGG - Chr5:103327721-103327740 MsG0580029881.01.T01:intron 20.0%
!!! AGTTAAAAGAGTATAAAACA+TGG + Chr5:103328040-103328059 None:intergenic 20.0%
!!! ATTTTTACAAAGTGTGTTTT+AGG - Chr5:103327034-103327053 MsG0580029881.01.T01:CDS 20.0%
!!! CTGATTAATCTTACTTTTTA+TGG - Chr5:103327061-103327080 MsG0580029881.01.T01:CDS 20.0%
!!! GATGGATTAATAATAGTTTA+TGG - Chr5:103329853-103329872 MsG0580029881.01.T01:intron 20.0%
!!! GGTTTTTTGAAGAAAAAAAA+TGG - Chr5:103329399-103329418 MsG0580029881.01.T01:intron 20.0%
!!! TATTTTCATTAGTAAAAAGC+AGG - Chr5:103327578-103327597 MsG0580029881.01.T01:intron 20.0%
!!! TTAATGGTAAGTAAGTTTTA+TGG - Chr5:103325277-103325296 MsG0580029881.01.T01:intron 20.0%
!!! TTAATTTTACACTTAGTCAA+TGG - Chr5:103325856-103325875 MsG0580029881.01.T01:intron 20.0%
!!! TTATTATTACATTTTCATGC+AGG - Chr5:103326051-103326070 MsG0580029881.01.T01:CDS 20.0%
!!! TTTCTTGAATTGACTTAATT+TGG - Chr5:103329933-103329952 MsG0580029881.01.T01:intron 20.0%
!!! TTTTTACAAAGTGTGTTTTA+GGG - Chr5:103327035-103327054 MsG0580029881.01.T01:CDS 20.0%
! AAAACGAAATCTTTCTCTTT+GGG - Chr5:103326461-103326480 MsG0580029881.01.T01:CDS 25.0%
! AAAAGAGTGATAGTTATTGT+CGG + Chr5:103329713-103329732 None:intergenic 25.0%
! AAAAGAGTTTAATTGAGAGA+AGG - Chr5:103325778-103325797 MsG0580029881.01.T01:CDS 25.0%
! AAATGAGGAAAAGAAACAAA+GGG + Chr5:103327527-103327546 None:intergenic 25.0%
! AAATGCAAGATTAAGATTTG+AGG + Chr5:103328415-103328434 None:intergenic 25.0%
! AATGAATCATGTGAAAAAGA+AGG - Chr5:103327779-103327798 MsG0580029881.01.T01:intron 25.0%
! AGATTGAAATGATTAGTGAA+TGG - Chr5:103325665-103325684 MsG0580029881.01.T01:intron 25.0%
! ATAAACGATTGATCATAGTT+CGG - Chr5:103325395-103325414 MsG0580029881.01.T01:intron 25.0%
! ATAATGAACAAAGTTCAAGT+TGG + Chr5:103327702-103327721 None:intergenic 25.0%
! ATATGCACGAGTAATAAAAT+TGG + Chr5:103328481-103328500 None:intergenic 25.0%
! ATCTCTTTCAAAAATCAGAA+TGG - Chr5:103325115-103325134 MsG0580029881.01.T01:CDS 25.0%
! ATCTTTAATGATGAAGCTAA+AGG - Chr5:103325162-103325181 MsG0580029881.01.T01:intron 25.0%
! ATCTTTGTGACATTATTGTT+TGG - Chr5:103326644-103326663 MsG0580029881.01.T01:CDS 25.0%
! ATGAATCATGTGAAAAAGAA+GGG - Chr5:103327780-103327799 MsG0580029881.01.T01:intron 25.0%
! CTATTTGATCTTTCAAAAGA+TGG - Chr5:103326276-103326295 MsG0580029881.01.T01:intron 25.0%
! GAATTCTCCAAATAAAACTT+CGG + Chr5:103325816-103325835 None:intergenic 25.0%
! GATTTATTAGTGACACTATT+TGG - Chr5:103329466-103329485 MsG0580029881.01.T01:intron 25.0%
! GTTACATGATACAAAAACTA+CGG + Chr5:103325451-103325470 None:intergenic 25.0%
! TACGATACAATACATGAAAT+TGG + Chr5:103325044-103325063 None:intergenic 25.0%
! TCGTGTAAATAATCTATTTG+AGG - Chr5:103328684-103328703 MsG0580029881.01.T01:intron 25.0%
! TGATGCTGATATTCTTAAAT+GGG - Chr5:103329324-103329343 MsG0580029881.01.T01:intron 25.0%
! TTATGATTAGGATTGTTCTA+TGG - Chr5:103327237-103327256 MsG0580029881.01.T01:intron 25.0%
! TTATGGCGATATATATTTAC+AGG - Chr5:103328224-103328243 MsG0580029881.01.T01:CDS 25.0%
! TTTCTAAATGGCATTCTAAT+TGG + Chr5:103328942-103328961 None:intergenic 25.0%
! TTTCTAACATTGTGACAATT+TGG - Chr5:103325726-103325745 MsG0580029881.01.T01:intron 25.0%
! TTTCTTCTTTCCTTATACAA+AGG - Chr5:103325007-103325026 MsG0580029881.01.T01:CDS 25.0%
! TTTGTATCATGTAACACTTA+GGG - Chr5:103325456-103325475 MsG0580029881.01.T01:intron 25.0%
!! AAAAATTCTTGACTGTTTTC+TGG + Chr5:103327172-103327191 None:intergenic 25.0%
!! AAGATTTCGTTTTGTATTGA+TGG + Chr5:103326454-103326473 None:intergenic 25.0%
!! AAGGTAGATTTTTATTAGGT+TGG - Chr5:103327754-103327773 MsG0580029881.01.T01:intron 25.0%
!! ATCAACGTCTTTATTGATTA+TGG - Chr5:103328207-103328226 MsG0580029881.01.T01:CDS 25.0%
!! CTCTTAGTTCCTTTAAAAAT+AGG + Chr5:103329825-103329844 None:intergenic 25.0%
!! CTTCATGTATATTTTCAACT+TGG - Chr5:103328771-103328790 MsG0580029881.01.T01:intron 25.0%
!! GTTGATTTCTCAAATCATAA+AGG - Chr5:103326699-103326718 MsG0580029881.01.T01:CDS 25.0%
!! TACATACCATTCTTTTCAAT+GGG + Chr5:103325961-103325980 None:intergenic 25.0%
!! TTTAGCTTCATCATTAAAGA+TGG + Chr5:103325163-103325182 None:intergenic 25.0%
!! TTTTGTATCATGTAACACTT+AGG - Chr5:103325455-103325474 MsG0580029881.01.T01:intron 25.0%
!!! ACTAGCCTTTAATATAATAC+CGG - Chr5:103326357-103326376 MsG0580029881.01.T01:CDS 25.0%
!!! ATGTATTTTAAGAGAAGGAA+CGG + Chr5:103328732-103328751 None:intergenic 25.0%
!!! GAATTTTTCTTCTGATTTGA+AGG - Chr5:103327184-103327203 MsG0580029881.01.T01:intron 25.0%
!!! TCTATTTTTCAGCTTTATTG+TGG - Chr5:103329230-103329249 MsG0580029881.01.T01:CDS 25.0%
!!! TGATGATGTATTTTAAGAGA+AGG + Chr5:103328737-103328756 None:intergenic 25.0%
!!! TGATTTTGAAGCTTTCTTAA+TGG - Chr5:103325261-103325280 MsG0580029881.01.T01:intron 25.0%
!!! TTTACTTTTTTTCGTGTAGA+TGG - Chr5:103328851-103328870 MsG0580029881.01.T01:CDS 25.0%
!!! TTTTAATTGTCGAATTCTCT+CGG - Chr5:103325585-103325604 MsG0580029881.01.T01:intron 25.0%
!!! TTTTTTGTTGAACTTATGAC+AGG - Chr5:103330151-103330170 MsG0580029881.01.T01:CDS 25.0%
AACAGAAAAGTGAATAGCAT+TGG - Chr5:103329349-103329368 MsG0580029881.01.T01:intron 30.0%
AACATGACATAAATCAAACC+CGG + Chr5:103326379-103326398 None:intergenic 30.0%
AATGGTATGTAGCATTGTAA+TGG - Chr5:103325970-103325989 MsG0580029881.01.T01:CDS 30.0%
AATTCTTAGAACCAAGTCAA+AGG - Chr5:103325831-103325850 MsG0580029881.01.T01:CDS 30.0%
ACACAACATTTATTCACCAT+AGG + Chr5:103327970-103327989 None:intergenic 30.0%
ACTGTTATCGTGCATTTAAT+GGG + Chr5:103329433-103329452 None:intergenic 30.0%
AGTTGGAAAAATCACCATTA+AGG + Chr5:103330345-103330364 None:intergenic 30.0%
ATCCTCAGGTAACAAATATA+TGG + Chr5:103330034-103330053 None:intergenic 30.0%
ATTACTCCCATTGAAAAGAA+TGG - Chr5:103325952-103325971 MsG0580029881.01.T01:intron 30.0%
CAAAACGAAATCTTTCTCTT+TGG - Chr5:103326460-103326479 MsG0580029881.01.T01:CDS 30.0%
CAAACCCGGTATTATATTAA+AGG + Chr5:103326365-103326384 None:intergenic 30.0%
CAAATGAGGAAAAGAAACAA+AGG + Chr5:103327528-103327547 None:intergenic 30.0%
CAGAATGGTAAAGTTACATA+TGG - Chr5:103325130-103325149 MsG0580029881.01.T01:CDS 30.0%
CCAAAATTGTCCTTTGTATA+AGG + Chr5:103325020-103325039 None:intergenic 30.0%
CTAAAATTAGCCAAACTCAA+CGG + Chr5:103329635-103329654 None:intergenic 30.0%
CTAACATGAAAAAGTTATGC+AGG + Chr5:103328004-103328023 None:intergenic 30.0%
CTATAGTTTAGCGACTAAAT+TGG + Chr5:103329736-103329755 None:intergenic 30.0%
GAAAGTTATTCATCCCTTAA+TGG - Chr5:103330328-103330347 MsG0580029881.01.T01:intron 30.0%
GAACTAAGAGACTAATTTGA+TGG - Chr5:103329835-103329854 MsG0580029881.01.T01:intron 30.0%
GAGATGATTTAACAGTTTCA+AGG + Chr5:103325563-103325582 None:intergenic 30.0%
GGTTCAATTTCAAACTATAG+AGG + Chr5:103328175-103328194 None:intergenic 30.0%
GTGATGCTGATATTCTTAAA+TGG - Chr5:103329323-103329342 MsG0580029881.01.T01:intron 30.0%
GTTGGAAAAATCACCATTAA+GGG + Chr5:103330344-103330363 None:intergenic 30.0%
GTTTAATTGAGAGAAGGTAA+TGG - Chr5:103325784-103325803 MsG0580029881.01.T01:CDS 30.0%
TAATTGTGTATCTCATTACC+TGG + Chr5:103326962-103326981 None:intergenic 30.0%
TACTGTTATCGTGCATTTAA+TGG + Chr5:103329434-103329453 None:intergenic 30.0%
TATAAAAAGGGTGGAAAACT+CGG - Chr5:103327604-103327623 MsG0580029881.01.T01:intron 30.0%
TATATATTTACAGGATGCAG+AGG - Chr5:103328233-103328252 MsG0580029881.01.T01:CDS 30.0%
TATTTGAGGATCGCAAATAA+AGG - Chr5:103327735-103327754 MsG0580029881.01.T01:intron 30.0%
TATTTGAGGATGTCAGAAAT+GGG - Chr5:103328698-103328717 MsG0580029881.01.T01:intron 30.0%
TCAAATAGATCATTTGTAGC+TGG + Chr5:103326264-103326283 None:intergenic 30.0%
TCTTCACAACTTGAATTTGA+TGG - Chr5:103330400-103330419 MsG0580029881.01.T01:CDS 30.0%
TGAAGCTATAACATGAAGAA+TGG + Chr5:103329077-103329096 None:intergenic 30.0%
TTATTACTCGTGCATATTTC+TGG - Chr5:103328484-103328503 MsG0580029881.01.T01:CDS 30.0%
TTGAAATGATTAGTGAATGG+TGG - Chr5:103325668-103325687 MsG0580029881.01.T01:intron 30.0%
TTTCTTACTCCAGTTGAATT+CGG + Chr5:103327837-103327856 None:intergenic 30.0%
TTTGTTACCTGAGGATATTA+TGG - Chr5:103330038-103330057 MsG0580029881.01.T01:intron 30.0%
! AGTTCCTTTAAAAATAGGAG+AGG + Chr5:103329820-103329839 None:intergenic 30.0%
! ATGAATTTTCATCTCCAAAG+GGG - Chr5:103327140-103327159 MsG0580029881.01.T01:intron 30.0%
! CCTTATACAAAGGACAATTT+TGG - Chr5:103325017-103325036 MsG0580029881.01.T01:CDS 30.0%
! CTACATACCATTCTTTTCAA+TGG + Chr5:103325962-103325981 None:intergenic 30.0%
! CTAGCCTTTAATATAATACC+GGG - Chr5:103326358-103326377 MsG0580029881.01.T01:CDS 30.0%
! CTCTCAATTAAACTCTTTTC+AGG + Chr5:103325777-103325796 None:intergenic 30.0%
! GAAAAGTATAAGAAAGAGCA+TGG + Chr5:103329671-103329690 None:intergenic 30.0%
! GACGTTGATTGATAATATCT+AGG + Chr5:103328196-103328215 None:intergenic 30.0%
! GATGAATTTTCATCTCCAAA+GGG - Chr5:103327139-103327158 MsG0580029881.01.T01:intron 30.0%
! TTCCATATATTTGTTACCTG+AGG - Chr5:103330029-103330048 MsG0580029881.01.T01:intron 30.0%
!! CAGTTCTCTACTTTTCTAAA+TGG + Chr5:103328954-103328973 None:intergenic 30.0%
!! GAGTAAGAAAGAGTCATTTT+TGG - Chr5:103327847-103327866 MsG0580029881.01.T01:intron 30.0%
!! TCTTTTTAGTATCTGTCGAT+AGG + Chr5:103328573-103328592 None:intergenic 30.0%
!! TGTATTTTAAGAGAAGGAAC+GGG + Chr5:103328731-103328750 None:intergenic 30.0%
!!! ACTAGCTGATTTTTTGGTTT+TGG + Chr5:103329153-103329172 None:intergenic 30.0%
!!! ACTTCCTCTCCTATTTTTAA+AGG - Chr5:103329813-103329832 MsG0580029881.01.T01:intron 30.0%
!!! ATCTTACTTTTTATGGTCTC+AGG - Chr5:103327068-103327087 MsG0580029881.01.T01:CDS 30.0%
!!! GAGAAAAGATGGTTTTAGTA+TGG - Chr5:103325702-103325721 MsG0580029881.01.T01:intron 30.0%
!!! TAAGAAAGAGTCATTTTTGG+TGG - Chr5:103327850-103327869 MsG0580029881.01.T01:intron 30.0%
!!! TGCAATACTAGCTGATTTTT+TGG + Chr5:103329159-103329178 None:intergenic 30.0%
AACAGATCATGATGCAAATG+AGG + Chr5:103327542-103327561 None:intergenic 35.0%
AATTGCAGAAGTTATTGGCA+GGG - Chr5:103327650-103327669 MsG0580029881.01.T01:intron 35.0%
AATTGGAACCTAGTTACCAA+GGG - Chr5:103329573-103329592 MsG0580029881.01.T01:intron 35.0%
ACCACAAAGAAAAGCAACAT+AGG + Chr5:103325085-103325104 None:intergenic 35.0%
ACTTTCATCTTCACCACAAA+CGG + Chr5:103330314-103330333 None:intergenic 35.0%
AGCAGGATATATAAAAAGGG+TGG - Chr5:103327595-103327614 MsG0580029881.01.T01:intron 35.0%
ATACGAATGAATCTCACTGA+TGG + Chr5:103330078-103330097 None:intergenic 35.0%
ATCACTTATCTCCTTTCCTT+GGG + Chr5:103329308-103329327 None:intergenic 35.0%
ATTGGCATCTTTAGTATCCA+AGG + Chr5:103328310-103328329 None:intergenic 35.0%
CCATACTTTATGCCTCAATT+CGG - Chr5:103326497-103326516 MsG0580029881.01.T01:intron 35.0%
CTAAATGGCATTCTAATTGG+AGG + Chr5:103328939-103328958 None:intergenic 35.0%
CTATTTGAGGATGTCAGAAA+TGG - Chr5:103328697-103328716 MsG0580029881.01.T01:intron 35.0%
CTGTTATCGTGCATTTAATG+GGG + Chr5:103329432-103329451 None:intergenic 35.0%
CTTGAGTCAATATCTTCCTT+TGG - Chr5:103326236-103326255 MsG0580029881.01.T01:intron 35.0%
GAGACTCCAATACATTATAC+TGG + Chr5:103330207-103330226 None:intergenic 35.0%
GGAAATAAGAAGCTCATTCT+TGG - Chr5:103329047-103329066 MsG0580029881.01.T01:intron 35.0%
GTAATTTCAGATCCAACTTC+TGG - Chr5:103326884-103326903 MsG0580029881.01.T01:intron 35.0%
GTACAGTGAAGATGAGATTA+GGG - Chr5:103325198-103325217 MsG0580029881.01.T01:intron 35.0%
TAATTGCAGAAGTTATTGGC+AGG - Chr5:103327649-103327668 MsG0580029881.01.T01:intron 35.0%
TACAGTGAAGATGAGATTAG+GGG - Chr5:103325199-103325218 MsG0580029881.01.T01:intron 35.0%
TATACCTCCATAATATCCTC+AGG + Chr5:103330048-103330067 None:intergenic 35.0%
TCAAAATAACTCATCACCGA+CGG + Chr5:103330431-103330450 None:intergenic 35.0%
TCGCTCAATTATTTCATCAC+AGG - Chr5:103328436-103328455 MsG0580029881.01.T01:intron 35.0%
TCTTCTGTGGTATATAACCA+GGG - Chr5:103326302-103326321 MsG0580029881.01.T01:CDS 35.0%
TGCAATCAAGTCATAAGAGT+CGG - Chr5:103328972-103328991 MsG0580029881.01.T01:intron 35.0%
TGGAAGGAAATAATTCCATG+TGG + Chr5:103327360-103327379 None:intergenic 35.0%
TGTACAGTGAAGATGAGATT+AGG - Chr5:103325197-103325216 MsG0580029881.01.T01:intron 35.0%
TTCACCATAGGATTAGATAG+TGG + Chr5:103327958-103327977 None:intergenic 35.0%
TTCTTCTGTGGTATATAACC+AGG - Chr5:103326301-103326320 MsG0580029881.01.T01:CDS 35.0%
TTGCAGCCAGTATAATGTAT+TGG - Chr5:103330198-103330217 MsG0580029881.01.T01:CDS 35.0%
TTGTCAACAAAGTAGGATGT+GGG - Chr5:103325535-103325554 MsG0580029881.01.T01:intron 35.0%
! AATTTGAGATCTCATTCCCA+AGG - Chr5:103329289-103329308 MsG0580029881.01.T01:intron 35.0%
! ATCTGAAATTACCAGTAGAG+TGG + Chr5:103326876-103326895 None:intergenic 35.0%
! ATTAAGATTTGAGGTTCCCT+CGG + Chr5:103328406-103328425 None:intergenic 35.0%
! CACAAGATTTGCTCTTTCAT+TGG + Chr5:103328328-103328347 None:intergenic 35.0%
! GGATGAATTTTCATCTCCAA+AGG - Chr5:103327138-103327157 MsG0580029881.01.T01:intron 35.0%
! TGCTTATCTGTTTAAGTTCG+AGG + Chr5:103325364-103325383 None:intergenic 35.0%
! TTGGATGCAATTTTGTGTAC+AGG - Chr5:103329485-103329504 MsG0580029881.01.T01:intron 35.0%
! TTTCGGCAGCTTTTATATAG+AGG - Chr5:103325640-103325659 MsG0580029881.01.T01:intron 35.0%
! TTTTCACTAGTCAATGTAGC+TGG - Chr5:103329008-103329027 MsG0580029881.01.T01:intron 35.0%
!! AAGAGAGATGCTTTAGAATG+TGG - Chr5:103328638-103328657 MsG0580029881.01.T01:intron 35.0%
!! GGAAGATATTGACTCAAGAA+TGG + Chr5:103326234-103326253 None:intergenic 35.0%
!! TCTTAATTTGTCTCCTGACA+AGG - Chr5:103327103-103327122 MsG0580029881.01.T01:intron 35.0%
!!! ACCTATGTTGCTTTTCTTTG+TGG - Chr5:103325081-103325100 MsG0580029881.01.T01:CDS 35.0%
!!! TATGTTGCTTTTCTTTGTGG+TGG - Chr5:103325084-103325103 MsG0580029881.01.T01:CDS 35.0%
AAACATACCACTTTGACCCT+TGG + Chr5:103329592-103329611 None:intergenic 40.0%
AAATACTACATTCGAGCGTC+TGG - Chr5:103325508-103325527 MsG0580029881.01.T01:intron 40.0%
AACATACCGAGTGTTTGGAA+GGG + Chr5:103327403-103327422 None:intergenic 40.0%
AACCAAGCTACAACGAAACA+AGG - Chr5:103326090-103326109 MsG0580029881.01.T01:CDS 40.0%
ACAGTGAAGATGAGATTAGG+GGG - Chr5:103325200-103325219 MsG0580029881.01.T01:intron 40.0%
ACTACACTCAAACAACCAAG+TGG + Chr5:103325891-103325910 None:intergenic 40.0%
AGAGACTGTTGTATCAGAAG+TGG + Chr5:103330383-103330402 None:intergenic 40.0%
AGCAATTAGCCGAATTCAAC+TGG - Chr5:103327825-103327844 MsG0580029881.01.T01:intron 40.0%
AGGGAAATGATTCCATACAG+TGG - Chr5:103327912-103327931 MsG0580029881.01.T01:intron 40.0%
ATCATGTGAAAAAGAAGGGC+TGG - Chr5:103327784-103327803 MsG0580029881.01.T01:intron 40.0%
ATGGTGAGACAACTTAACCA+CGG + Chr5:103327319-103327338 None:intergenic 40.0%
CAAAAGATGGCATTCTTCTG+TGG - Chr5:103326289-103326308 MsG0580029881.01.T01:intron 40.0%
CAATTGGAACCTAGTTACCA+AGG - Chr5:103329572-103329591 MsG0580029881.01.T01:intron 40.0%
CATCACTTATCTCCTTTCCT+TGG + Chr5:103329309-103329328 None:intergenic 40.0%
CATCCTACTTTGTTGACAAG+TGG + Chr5:103325534-103325553 None:intergenic 40.0%
CATCTTAGTAGAACCTTGTC+AGG + Chr5:103327119-103327138 None:intergenic 40.0%
CCGAATTGAGGCATAAAGTA+TGG + Chr5:103326500-103326519 None:intergenic 40.0%
CGGCAACTATTGCATTTGTA+TGG + Chr5:103329615-103329634 None:intergenic 40.0%
CTGACAAGGTTCTACTAAGA+TGG - Chr5:103327117-103327136 MsG0580029881.01.T01:intron 40.0%
CTTGAGCATGCAGAAAGAAT+GGG - Chr5:103328348-103328367 MsG0580029881.01.T01:intron 40.0%
CTTGTCAACAAAGTAGGATG+TGG - Chr5:103325534-103325553 MsG0580029881.01.T01:intron 40.0%
GAAACAAAGGGAACAATAGC+CGG + Chr5:103327515-103327534 None:intergenic 40.0%
GAAGTTCAACCTGTGTAAAC+TGG + Chr5:103324961-103324980 None:intergenic 40.0%
GCTTTCGTTAAGGAATGATG+AGG + Chr5:103326130-103326149 None:intergenic 40.0%
GGAAATAATTCCATGTGGAG+AGG + Chr5:103327355-103327374 None:intergenic 40.0%
GGATGCACAGTTGTTAACAT+TGG - Chr5:103326531-103326550 MsG0580029881.01.T01:intron 40.0%
GGCTTGATTGAAAGACAGAA+GGG - Chr5:103327893-103327912 MsG0580029881.01.T01:intron 40.0%
GGGAAATGATTCCATACAGT+GGG - Chr5:103327913-103327932 MsG0580029881.01.T01:intron 40.0%
GGTATCATCAACACTCAAGT+TGG + Chr5:103330362-103330381 None:intergenic 40.0%
GGTATGTTCCGAATCATGAT+CGG - Chr5:103327415-103327434 MsG0580029881.01.T01:intron 40.0%
GTCTCACATTCAGAGCTTTA+AGG - Chr5:103329378-103329397 MsG0580029881.01.T01:intron 40.0%
GTTACCTGAGGATATTATGG+AGG - Chr5:103330041-103330060 MsG0580029881.01.T01:intron 40.0%
TAATTGTCGAATTCTCTCGG+TGG - Chr5:103325588-103325607 MsG0580029881.01.T01:intron 40.0%
TAGGAGAGGAAGTGATAGTT+CGG + Chr5:103329806-103329825 None:intergenic 40.0%
TAGTTCATGCGCTAAATCGA+AGG - Chr5:103329895-103329914 MsG0580029881.01.T01:intron 40.0%
TCAAGAATGGATCATCACCA+AGG + Chr5:103326221-103326240 None:intergenic 40.0%
TCATTTGTAGCTGGATCCAA+AGG + Chr5:103326255-103326274 None:intergenic 40.0%
TGGCTTGATTGAAAGACAGA+AGG - Chr5:103327892-103327911 MsG0580029881.01.T01:intron 40.0%
TTATCAATGTTGCTGTGCCT+GGG - Chr5:103326412-103326431 MsG0580029881.01.T01:CDS 40.0%
TTTATGCCTCAATTCGGCTA+AGG - Chr5:103326503-103326522 MsG0580029881.01.T01:intron 40.0%
! AATTTTCATCTCCAAAGGGG+AGG - Chr5:103327143-103327162 MsG0580029881.01.T01:intron 40.0%
! ACGATTAGCGGATCAGAAAA+GGG - Chr5:103326168-103326187 MsG0580029881.01.T01:intron 40.0%
! CAATGGCTTTTGAATCCACT+TGG - Chr5:103325873-103325892 MsG0580029881.01.T01:intron 40.0%
! CTCTTTTTCTTCCACTCTAC+TGG - Chr5:103326862-103326881 MsG0580029881.01.T01:intron 40.0%
! TGCGACACTGATTATGTAAG+TGG + Chr5:103329995-103330014 None:intergenic 40.0%
! TGGAATTTTCCTGCTACAGA+TGG - Chr5:103328791-103328810 MsG0580029881.01.T01:CDS 40.0%
! TGTACAACTTTTGTTCACCG+TGG - Chr5:103327299-103327318 MsG0580029881.01.T01:intron 40.0%
!! CAAAAGGTACTTGAGCACAA+GGG - Chr5:103328374-103328393 MsG0580029881.01.T01:intron 40.0%
!! CAAAGTTCAAGTTGGACTCA+TGG + Chr5:103327694-103327713 None:intergenic 40.0%
!! GGAAGTGATTTTGGTATGGA+AGG + Chr5:103327376-103327395 None:intergenic 40.0%
!! GTCGGTGATGAGTTATTTTG+AGG - Chr5:103330430-103330449 MsG0580029881.01.T01:CDS 40.0%
!! GTTGGGAAGTGATTTTGGTA+TGG + Chr5:103327380-103327399 None:intergenic 40.0%
!!! AAGAGTCATTTTTGGTGGAG+AGG - Chr5:103327855-103327874 MsG0580029881.01.T01:intron 40.0%
!!! GACGAGACCGAAGTTTTATT+TGG - Chr5:103325806-103325825 MsG0580029881.01.T01:CDS 40.0%
AAAAGGGTGGAAAACTCGGA+AGG - Chr5:103327608-103327627 MsG0580029881.01.T01:intron 45.0%
AAAGGGTGGAAAACTCGGAA+GGG - Chr5:103327609-103327628 MsG0580029881.01.T01:intron 45.0%
AACTTGCATCCATCTGTAGC+AGG + Chr5:103328803-103328822 None:intergenic 45.0%
ACATACCGAGTGTTTGGAAG+GGG + Chr5:103327402-103327421 None:intergenic 45.0%
ACCCTTCTTCACACGATTAG+CGG - Chr5:103326156-103326175 MsG0580029881.01.T01:intron 45.0%
AGGTTCCAATTGACAACCCT+TGG + Chr5:103329564-103329583 None:intergenic 45.0%
AGTACGTGGAAACTCGGATT+TGG - Chr5:103325908-103325927 MsG0580029881.01.T01:intron 45.0%
AGTGGGTGTACCATCAAATG+TGG - Chr5:103327930-103327949 MsG0580029881.01.T01:intron 45.0%
ATCAACCCTAGAACCAGATG+AGG + Chr5:103326685-103326704 None:intergenic 45.0%
ATCCGCTAATCGTGTGAAGA+AGG + Chr5:103326161-103326180 None:intergenic 45.0%
ATCTTCACCACAAACGGAAG+GGG + Chr5:103330308-103330327 None:intergenic 45.0%
ATTAGGGCCTTAAGCAATGC+AGG - Chr5:103328542-103328561 MsG0580029881.01.T01:intron 45.0%
CAAGCTACAACGAAACAAGG+AGG - Chr5:103326093-103326112 MsG0580029881.01.T01:CDS 45.0%
CAGGATAAGAGCTTGTCAAG+TGG - Chr5:103329504-103329523 MsG0580029881.01.T01:intron 45.0%
CATCTTCACCACAAACGGAA+GGG + Chr5:103330309-103330328 None:intergenic 45.0%
CGAATGAATCTCACTGATGG+TGG + Chr5:103330075-103330094 None:intergenic 45.0%
CTAGTTACCAAGGGTCAAAG+TGG - Chr5:103329582-103329601 MsG0580029881.01.T01:intron 45.0%
CTCAATTCGGCTAAGGCTAT+TGG - Chr5:103326510-103326529 MsG0580029881.01.T01:intron 45.0%
CTTATCAATGTTGCTGTGCC+TGG - Chr5:103326411-103326430 MsG0580029881.01.T01:CDS 45.0%
GAACATACCGAGTGTTTGGA+AGG + Chr5:103327404-103327423 None:intergenic 45.0%
GAGATCTCATTCCCAAGGAA+AGG - Chr5:103329294-103329313 MsG0580029881.01.T01:intron 45.0%
GAGTGTAGTACGTGGAAACT+CGG - Chr5:103325902-103325921 MsG0580029881.01.T01:intron 45.0%
GCAATAGTTGCCGTTGAGTT+TGG - Chr5:103329622-103329641 MsG0580029881.01.T01:intron 45.0%
GCACATGAAGTCTCTCATTC+CGG - Chr5:103327493-103327512 MsG0580029881.01.T01:intron 45.0%
GCTCACATAAACAGCTACCT+TGG - Chr5:103326201-103326220 MsG0580029881.01.T01:intron 45.0%
GCTGGCAATGATATTGTGCA+AGG - Chr5:103329026-103329045 MsG0580029881.01.T01:intron 45.0%
GCTTCAAAGCCAGTTTACAC+AGG - Chr5:103324949-103324968 MsG0580029881.01.T01:CDS 45.0%
GCTTGAGCATGCAGAAAGAA+TGG - Chr5:103328347-103328366 MsG0580029881.01.T01:intron 45.0%
GGCATCTTTAGTATCCAAGG+TGG + Chr5:103328307-103328326 None:intergenic 45.0%
GGGTGGTTATGCTTTCGTTA+AGG + Chr5:103326140-103326159 None:intergenic 45.0%
GGTTGTTTGAGTGTAGTACG+TGG - Chr5:103325894-103325913 MsG0580029881.01.T01:intron 45.0%
GTATTGCATTGTGTGTGTCG+TGG - Chr5:103329171-103329190 MsG0580029881.01.T01:CDS 45.0%
GTTTATGTTGCAGCCTCATC+TGG - Chr5:103326669-103326688 MsG0580029881.01.T01:CDS 45.0%
TAACATTGGCGCACAAGACT+TGG - Chr5:103326545-103326564 MsG0580029881.01.T01:intron 45.0%
TAAGAAGACACCTCAGCTTG+TGG - Chr5:103326920-103326939 MsG0580029881.01.T01:CDS 45.0%
TAGAGCCAAGGGTTGTCAAT+TGG - Chr5:103329556-103329575 MsG0580029881.01.T01:intron 45.0%
TCAACCAATTCCACAAGCTG+AGG + Chr5:103326933-103326952 None:intergenic 45.0%
TCATCTTCACCACAAACGGA+AGG + Chr5:103330310-103330329 None:intergenic 45.0%
TCCGCTAATCGTGTGAAGAA+GGG + Chr5:103326160-103326179 None:intergenic 45.0%
TCGTTGTCTTCGTCTGTTGT+TGG + Chr5:103330229-103330248 None:intergenic 45.0%
TCTTTAGTATCCAAGGTGGC+TGG + Chr5:103328303-103328322 None:intergenic 45.0%
TGGCCACTTGTCAACAAAGT+AGG - Chr5:103325528-103325547 MsG0580029881.01.T01:intron 45.0%
TTCGGAACATACCGAGTGTT+TGG + Chr5:103327408-103327427 None:intergenic 45.0%
! AAGGGGTTGGGAAGTGATTT+TGG + Chr5:103327385-103327404 None:intergenic 45.0%
! CAAGCTGAGGTGTCTTCTTA+AGG + Chr5:103326920-103326939 None:intergenic 45.0%
! CAATAGCCTTAGCCGAATTG+AGG + Chr5:103326512-103326531 None:intergenic 45.0%
! CACGATTAGCGGATCAGAAA+AGG - Chr5:103326167-103326186 MsG0580029881.01.T01:intron 45.0%
! CACTTTGACCCTTGGTAACT+AGG + Chr5:103329584-103329603 None:intergenic 45.0%
! CTCCTTGTTTCGTTGTAGCT+TGG + Chr5:103326095-103326114 None:intergenic 45.0%
! GAGAGGTGTAGCATCGAATA+TGG + Chr5:103327338-103327357 None:intergenic 45.0%
! GATAGTGGCACCACATTTGA+TGG + Chr5:103327943-103327962 None:intergenic 45.0%
! GATGATGGCCGATCATGATT+CGG + Chr5:103327426-103327445 None:intergenic 45.0%
! TTGATGGTACACCCACTGTA+TGG + Chr5:103327927-103327946 None:intergenic 45.0%
!! CAGAAAGAATGGGCTGCAAA+AGG - Chr5:103328358-103328377 MsG0580029881.01.T01:intron 45.0%
!! GCAAAAGGTACTTGAGCACA+AGG - Chr5:103328373-103328392 MsG0580029881.01.T01:intron 45.0%
!! GGAATTGGTTGATGATAGCC+AGG - Chr5:103326941-103326960 MsG0580029881.01.T01:CDS 45.0%
!! GGTGCCACTATCTAATCCTA+TGG - Chr5:103327951-103327970 MsG0580029881.01.T01:intron 45.0%
!! TTTTCTGGTAACCTCCCCTT+TGG + Chr5:103327157-103327176 None:intergenic 45.0%
!!! AGTCATTTTTGGTGGAGAGG+CGG - Chr5:103327858-103327877 MsG0580029881.01.T01:intron 45.0%
!! AAATGTAATAATAAATTAAA+AGG + Chr5:103326045-103326064 None:intergenic 5.0%
AGCACAAGGGACATTACCGA+GGG - Chr5:103328387-103328406 MsG0580029881.01.T01:intron 50.0%
ATCAGTGTCGCACGAAAGCT+TGG - Chr5:103330003-103330022 MsG0580029881.01.T01:intron 50.0%
ATGCGAAAATCAGCAGACCC+TGG + Chr5:103326322-103326341 None:intergenic 50.0%
GACACCTCAGCTTGTGGAAT+TGG - Chr5:103326926-103326945 MsG0580029881.01.T01:CDS 50.0%
GACTGCAATGTTCAGGAGCA+AGG + Chr5:103328281-103328300 None:intergenic 50.0%
GCTAATCGTGTGAAGAAGGG+TGG + Chr5:103326157-103326176 None:intergenic 50.0%
GGCTAAGATCTGCCAGAAGT+TGG + Chr5:103326899-103326918 None:intergenic 50.0%
TCTCAGTGCAGTAGAGCCAA+GGG - Chr5:103329545-103329564 MsG0580029881.01.T01:intron 50.0%
TTCTCAGTGCAGTAGAGCCA+AGG - Chr5:103329544-103329563 MsG0580029881.01.T01:intron 50.0%
! GTCAAGTGGACTCTTCTTCC+TGG - Chr5:103329518-103329537 MsG0580029881.01.T01:intron 50.0%
!! GAATTTGATGGCGTTGCCGT+CGG - Chr5:103330412-103330431 MsG0580029881.01.T01:CDS 50.0%
!! TGCAGCCTCATCTGGTTCTA+GGG - Chr5:103326677-103326696 MsG0580029881.01.T01:CDS 50.0%
!! TTGCAGCCTCATCTGGTTCT+AGG - Chr5:103326676-103326695 MsG0580029881.01.T01:CDS 50.0%
!! TTGGTAGTGAGAGTGCTAGC+AGG + Chr5:103330265-103330284 None:intergenic 50.0%
!!! ATTTTTGGTGGAGAGGCGGA+GGG - Chr5:103327862-103327881 MsG0580029881.01.T01:intron 50.0%
ACATTGCAGTCCAGCCACCT+TGG - Chr5:103328290-103328309 MsG0580029881.01.T01:intron 55.0%
ACCGAGTGTTTGGAAGGGGT+TGG + Chr5:103327398-103327417 None:intergenic 55.0%
CCCAACCCCTTCCAAACACT+CGG - Chr5:103327394-103327413 MsG0580029881.01.T01:intron 55.0%
CCGAGTGTTTGGAAGGGGTT+GGG + Chr5:103327397-103327416 None:intergenic 55.0%
CGATGCTACACCTCTCCACA+TGG - Chr5:103327342-103327361 MsG0580029881.01.T01:intron 55.0%
CTACTGCACTGAGAAGCTCC+AGG + Chr5:103329539-103329558 None:intergenic 55.0%
GAGCACAAGGGACATTACCG+AGG - Chr5:103328386-103328405 MsG0580029881.01.T01:intron 55.0%
GGCCACTCCTGCATTGCTTA+AGG + Chr5:103328552-103328571 None:intergenic 55.0%
GGCCTTAAGCAATGCAGGAG+TGG - Chr5:103328547-103328566 MsG0580029881.01.T01:intron 55.0%
GTGGCTGGACTGCAATGTTC+AGG + Chr5:103328288-103328307 None:intergenic 55.0%
GTGTGTCGTGGAGACGAACT+TGG - Chr5:103329183-103329202 MsG0580029881.01.T01:CDS 55.0%
TCATCCTGCGACAGTGGCAA+CGG - Chr5:103327441-103327460 MsG0580029881.01.T01:intron 55.0%
TTGCCACTGTCGCAGGATGA+TGG + Chr5:103327441-103327460 None:intergenic 55.0%
! GGCGCACAAGACTTGGTTGA+CGG - Chr5:103326552-103326571 MsG0580029881.01.T01:intron 55.0%
! GTTGGTGTTTGCAGCACGCA+AGG - Chr5:103327463-103327482 MsG0580029881.01.T01:intron 55.0%
!! GTGAGAGTGCTAGCAGGTGA+AGG + Chr5:103330259-103330278 None:intergenic 55.0%
!!! CATTTTTGGTGGAGAGGCGG+AGG - Chr5:103327861-103327880 MsG0580029881.01.T01:intron 55.0%
ACCACAAACGGAAGGGGCAG+GGG + Chr5:103330302-103330321 None:intergenic 60.0%
AGGGGAAGCTTCGGGTGTGT+TGG + Chr5:103330284-103330303 None:intergenic 60.0%
CACCACAAACGGAAGGGGCA+GGG + Chr5:103330303-103330322 None:intergenic 60.0%
CGGCTAATTGCTGCTCTCGC+AGG + Chr5:103327817-103327836 None:intergenic 60.0%
GAGAGGCGGAGGGTAGTGAA+TGG - Chr5:103327872-103327891 MsG0580029881.01.T01:intron 60.0%
GCTCGCTCGTCTATAGTCCC+AGG + Chr5:103326432-103326451 None:intergenic 60.0%
TCACCACAAACGGAAGGGGC+AGG + Chr5:103330304-103330323 None:intergenic 60.0%
CCAACCGTTGCCACTGTCGC+AGG + Chr5:103327448-103327467 None:intergenic 65.0%
CCTGCGACAGTGGCAACGGT+TGG - Chr5:103327445-103327464 MsG0580029881.01.T01:intron 65.0%
CGGCCATCATCCTGCGACAG+TGG - Chr5:103327435-103327454 MsG0580029881.01.T01:intron 65.0%
GAAGGGGCAGGGGAAGCTTC+GGG + Chr5:103330292-103330311 None:intergenic 65.0%
GGAAGGGGCAGGGGAAGCTT+CGG + Chr5:103330293-103330312 None:intergenic 65.0%
TCCCCTGCCCCTTCCGTTTG+TGG - Chr5:103330298-103330317 MsG0580029881.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 103324911 103330450 103324911 ID=MsG0580029881.01;Name=MsG0580029881.01
Chr5 mRNA 103324911 103330450 103324911 ID=MsG0580029881.01.T01;Parent=MsG0580029881.01;Name=MsG0580029881.01.T01;_AED=0.30;_eAED=0.33;_QI=0|0.46|0.5|1|1|1|14|0|686
Chr5 exon 103330364 103330450 103330364 ID=MsG0580029881.01.T01:exon:35225;Parent=MsG0580029881.01.T01
Chr5 exon 103330075 103330249 103330075 ID=MsG0580029881.01.T01:exon:35224;Parent=MsG0580029881.01.T01
Chr5 exon 103329051 103329288 103329051 ID=MsG0580029881.01.T01:exon:35223;Parent=MsG0580029881.01.T01
Chr5 exon 103328779 103328954 103328779 ID=MsG0580029881.01.T01:exon:35222;Parent=MsG0580029881.01.T01
Chr5 exon 103328641 103328679 103328641 ID=MsG0580029881.01.T01:exon:35221;Parent=MsG0580029881.01.T01
Chr5 exon 103328478 103328546 103328478 ID=MsG0580029881.01.T01:exon:35220;Parent=MsG0580029881.01.T01
Chr5 exon 103328156 103328271 103328156 ID=MsG0580029881.01.T01:exon:35219;Parent=MsG0580029881.01.T01
Chr5 exon 103326904 103327115 103326904 ID=MsG0580029881.01.T01:exon:35218;Parent=MsG0580029881.01.T01
Chr5 exon 103326638 103326797 103326638 ID=MsG0580029881.01.T01:exon:35217;Parent=MsG0580029881.01.T01
Chr5 exon 103326293 103326491 103326293 ID=MsG0580029881.01.T01:exon:35216;Parent=MsG0580029881.01.T01
Chr5 exon 103325962 103326119 103325962 ID=MsG0580029881.01.T01:exon:35215;Parent=MsG0580029881.01.T01
Chr5 exon 103325758 103325854 103325758 ID=MsG0580029881.01.T01:exon:35214;Parent=MsG0580029881.01.T01
Chr5 exon 103325299 103325390 103325299 ID=MsG0580029881.01.T01:exon:35213;Parent=MsG0580029881.01.T01
Chr5 exon 103324911 103325153 103324911 ID=MsG0580029881.01.T01:exon:35212;Parent=MsG0580029881.01.T01
Chr5 CDS 103330364 103330450 103330364 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103330075 103330249 103330075 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103329051 103329288 103329051 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103328779 103328954 103328779 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103328641 103328679 103328641 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103328478 103328546 103328478 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103328156 103328271 103328156 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103326904 103327115 103326904 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103326638 103326797 103326638 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103326293 103326491 103326293 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103325962 103326119 103325962 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103325758 103325854 103325758 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103325299 103325390 103325299 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Chr5 CDS 103324911 103325153 103324911 ID=MsG0580029881.01.T01:cds;Parent=MsG0580029881.01.T01
Gene Sequence

>MsG0580029881.01.T01

ATGTCAAAATTTGAGGGTGTTATTGTATCTGATCAATTGCTTCAAAGCCAGTTTACACAGGTTGAACTTCGCAGCCTTAAATCAAAATTTATCTCTTTCAAAAATCAGAATGGTAAAGTTACATATGGAGATTTACCATCTTTAATGATGAAGCTAAAGGCATTCATAGATATGTACAGTGAAGATGAGATTAGGGGGATCTTGAATGAATCACGCAATGATTTTACAACTAATGTTGATTTTGAAGCTTTCTTAATGGTAAGTATATTTGAATTTGCGAACCAAGCTACAACGAAACAAGGAGGACTGAAGCACTCCTCATCATTCCTTAACGAAAGCATAACCACCCTTCTTCACACGATTAGCGGATCAGAAAAGGGCTTCTATGTTGCTCACATAAACAGCTACCTTGGTGATGATCCATTCTTGAGTCAATATCTTCCTTTGGATCCAGCTACAAATGATCTATTTGATCTTTCAAAAGATGGCATTCTTCTGTGTAAGCTTATCAATGTTGCTGTGCCTGGGACTATAGACGAGCGAGCCATCAATACAAAACGAAATCTTTCTCTTTGGGAGAGAAATGAGAACCATACTTTATGCCTCAATTCGGCTAAGGCTATTGGATGCACAGTTGTTAACATTGGCGCACAAGACTTGGTTGACGGAAGAGTACCCTCATCTGGTTCTAGGGTTGATTTCTCAAATCATAAAGGACTAATAGATCTTTTGAATTTAGAAATGATTAATTACTCATTGTTTCTCTTTTTCTTCCACTCTACTGGATATGAAGAGCTTCTTAATTTGTCTCCTGACAAGGTTCTACTAAGATGGATGAATTTTCATCTCCAAAGGGGAGGTTACCAGAAAACAGTCAAGAATTTTTCTTCTGATTTGAAGGATGCAGAGGCTTATGCATATCTTCTGAATGTCCTTGCTCCTGAACATTGCAGTCCAGCCACCTTGGATACTAAAGATGCCAATGAAAGAGCAAATCTTGTGCTTGAGCATGCAGAAAGAATGGGCTGCAAAAGGTACTTGAGCACAAGGGACATTACCGAGGGAACCTCAAATCTTAATCTTGCATTTGTCGCTCAATTATTTCATCACAGGAGTGGCCTATCGACAGATACTAAAAAGATGTCATATGCTGAGATGATAACAGAAGATGTGCAAACATGTAGAGAAGAGAGATGCTTTAGAATGTGGATCAATAGTCTTGAAATTTCTACTCGTGTAAATAATCTATTTGAGGATGTCAGAAATGGGTATATGGATACTCTTAGAAGTTCTAGACAAGATTTTCCTGAATCGGTTAACTGGAAACAGGCAACAAGACCTCCAATTAGAATGCCATTTAGAAAAGTAGAGAACTGCAATCAAGTCATAAGAGTCGGTAAACAACTGAAATTTTCACTAGTCAATGTAGCTGGCAATGATATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGTTGATGAGATTCACAATGCTTCAACTGTTGAGAAATTTGAGATCTCATTCCCAAGGAAAGGAGATAAGTGATGCTGATATTCTTAAATGGGCAAACAGAAAAGTGAATAGCATTGGAAGAACGTCTCACATTCAGAGCTTTAAGGATAAGAGCTTGTCAAGTGGACTCTTCTTCCTGGAGCTTCTCAGTGCAGTAGAGCCAAGGGTTGTCAATTGGAACCTAGTTACCAAGGGTCAAAGTGATGATGAGAAGAAGTTGAATGCCACTTACATAATCAGTGTCGCACGAAAGCTTGGTTGTTCCATATATTTGTTACCTGAGGATATTATGGAGTATAATGTATTGGAGTCTCCAACAACAGACGAAGACAACGATTCATTTCCTTCACCTGCTAGCACTCTCACTACCAACACACCCGAAGCTTCCCCTGCCCCTTCCGTTTGTGGTGAAGATGAAAGTTATTCATCCCTTAATGGTGATTTTTCCAACTTGAGTGTTGATGATACCACTTCTGATACAACAGTCTCTTCACAACTTGAATTTGATGGCGTTGCCGTCGGTGATGAGTTATTTTGA

Protein sequence

>MsG0580029881.01.T01

MSKFEGVIVSDQLLQSQFTQVELRSLKSKFISFKNQNGKVTYGDLPSLMMKLKAFIDMYSEDEIRGILNESRNDFTTNVDFEAFLMVSIFEFANQATTKQGGLKHSSSFLNESITTLLHTISGSEKGFYVAHINSYLGDDPFLSQYLPLDPATNDLFDLSKDGILLCKLINVAVPGTIDERAINTKRNLSLWERNENHTLCLNSAKAIGCTVVNIGAQDLVDGRVPSSGSRVDFSNHKGLIDLLNLEMINYSLFLFFFHSTGYEELLNLSPDKVLLRWMNFHLQRGGYQKTVKNFSSDLKDAEAYAYLLNVLAPEHCSPATLDTKDANERANLVLEHAERMGCKRYLSTRDITEGTSNLNLAFVAQLFHHRSGLSTDTKKMSYAEMITEDVQTCREERCFRMWINSLEISTRVNNLFEDVRNGYMDTLRSSRQDFPESVNWKQATRPPIRMPFRKVENCNQVIRVGKQLKFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLRNLRSHSQGKEISDADILKWANRKVNSIGRTSHIQSFKDKSLSSGLFFLELLSAVEPRVVNWNLVTKGQSDDEKKLNATYIISVARKLGCSIYLLPEDIMEYNVLESPTTDEDNDSFPSPASTLTTNTPEASPAPSVCGEDESYSSLNGDFSNLSVDDTTSDTTVSSQLEFDGVAVGDELF*