AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027099.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027099.01.T01 MTR_5g053450 96.414 251 7 1 1 249 1 251 1.56e-176 498
MsG0580027099.01.T01 MTR_7g073530 35.593 177 83 6 104 249 86 262 1.95e-22 95.9
MsG0580027099.01.T01 MTR_8g005720 37.017 181 77 6 105 249 92 271 1.79e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027099.01.T01 AT1G68830 79.058 191 40 0 59 249 48 238 5.51e-113 335
MsG0580027099.01.T01 AT5G01920 35.465 172 77 4 112 249 96 267 3.90e-21 92.4
MsG0580027099.01.T01 AT5G01920 35.465 172 77 4 112 249 96 267 3.90e-21 92.4

Find 51 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTGCTTTGTCTTATCTT+TGG 0.201448 5:-53048931 MsG0580027099.01.T01:CDS
CCTGGTGTTGTTCTTGCTTT+TGG 0.208005 5:-53048950 MsG0580027099.01.T01:CDS
CTCCTGAATATTGGCTTATA+TGG 0.251366 5:-53047317 MsG0580027099.01.T01:CDS
CCATATCATGAAGTTGGTTT+TGG 0.263305 5:+53049269 None:intergenic
TGGTGCTTTGTCTTATCTTT+GGG 0.266282 5:-53048930 MsG0580027099.01.T01:CDS
AGGGTTTGATTCTAAGTCTT+TGG 0.275538 5:+53049170 None:intergenic
AATATGGTGCTGTAGAAATT+TGG 0.292645 5:-53047545 MsG0580027099.01.T01:CDS
CTTTGTGACTCCAATTCCTT+TGG 0.309079 5:+53049234 None:intergenic
TTGAAGAAGGCGACTGAATA+TGG 0.312551 5:-53047561 MsG0580027099.01.T01:CDS
AAGAGACTACCAACATTATA+TGG 0.329901 5:+53047243 None:intergenic
TGGTGGTGGTTCATTGTTTG+AGG 0.346610 5:+53049150 None:intergenic
CCAAAACCAACTTCATGATA+TGG 0.361676 5:-53049269 MsG0580027099.01.T01:exon
CAAAGAAGACTCCTGAATAT+TGG 0.362523 5:-53047326 MsG0580027099.01.T01:CDS
CGCCATATAAGCCAATATTC+AGG 0.377337 5:+53047315 None:intergenic
CAACACCAACACCTACAAAA+AGG 0.400926 5:+53049056 None:intergenic
ACTGTTGCAACCAAAGGAAT+TGG 0.403712 5:-53049244 MsG0580027099.01.T01:CDS
GCTACACCTGGTGTTGCTCC+TGG 0.415742 5:-53048908 MsG0580027099.01.T01:CDS
GGCTTATATGGCGGTTTGAA+GGG 0.418782 5:-53047305 MsG0580027099.01.T01:CDS
GGTGGTGGTTCATTGTTTGA+GGG 0.422407 5:+53049151 None:intergenic
TCTTATCTTTGGGCTACACC+TGG 0.433977 5:-53048920 MsG0580027099.01.T01:CDS
TGGCTTATATGGCGGTTTGA+AGG 0.434408 5:-53047306 MsG0580027099.01.T01:CDS
GGCTTGAATGTTACTGTCCC+TGG 0.447608 5:-53048968 MsG0580027099.01.T01:CDS
ATCACCACAAAAGCCATTCA+TGG 0.467695 5:-53049109 MsG0580027099.01.T01:CDS
AATCCATTCACCACCATGAA+TGG 0.480510 5:+53049096 None:intergenic
TAACAAACCTTTCTGAAAGT+AGG 0.489012 5:+53048839 None:intergenic
CTTGCACTGCATGGTGGTGG+TGG 0.491350 5:+53049136 None:intergenic
AAGCCATTCATGGTGGTGAA+TGG 0.493552 5:-53049099 MsG0580027099.01.T01:CDS
AATAATAATACCTTTGAAGA+GGG 0.497156 5:+53047956 None:intergenic
CCAAAAGCAAGAACAACACC+AGG 0.508205 5:+53048950 None:intergenic
AATTCCTTTGGTTGCAACAG+TGG 0.512321 5:+53049246 None:intergenic
GTTTAGACCTACTTTCAGAA+AGG 0.516126 5:-53048846 MsG0580027099.01.T01:intron
ACATTCAAGCCACTAGACTT+AGG 0.534526 5:+53048980 None:intergenic
CTGAATATTGGCTTATATGG+CGG 0.536964 5:-53047314 MsG0580027099.01.T01:CDS
AATCTTGCACTGCATGGTGG+TGG 0.543569 5:+53049133 None:intergenic
CAGTGGCCATATCATGAAGT+TGG 0.544516 5:+53049263 None:intergenic
TGATTCTAAGTCTTTGGCCA+AGG 0.549378 5:+53049176 None:intergenic
GCTTATATGGCGGTTTGAAG+GGG 0.553342 5:-53047304 MsG0580027099.01.T01:CDS
CCACACTCCATCACAGTGCA+TGG 0.571570 5:+53049028 None:intergenic
CTGCAATAGATCAGCTAAGG+TGG 0.572573 5:+53047278 None:intergenic
AGATTGATATGAGTTTGAAG+AGG 0.573556 5:-53049320 None:intergenic
GTGATGAATCTTGCACTGCA+TGG 0.588583 5:+53049127 None:intergenic
ATGGCCACTGTTGCAACCAA+AGG 0.589790 5:-53049250 MsG0580027099.01.T01:CDS
CAATAATAATACCTTTGAAG+AGG 0.595715 5:+53047955 None:intergenic
AGGTGACTTAGTCTTGAAGA+AGG 0.596316 5:-53047574 MsG0580027099.01.T01:CDS
ACTCTGCAATAGATCAGCTA+AGG 0.600527 5:+53047275 None:intergenic
AGCACTCTTCCTAAGTCTAG+TGG 0.608042 5:-53048989 MsG0580027099.01.T01:CDS
TGGACTTCCATGCACTGTGA+TGG 0.608649 5:-53049035 MsG0580027099.01.T01:CDS
CCATGCACTGTGATGGAGTG+TGG 0.621185 5:-53049028 MsG0580027099.01.T01:CDS
CAAAAGCAAGAACAACACCA+GGG 0.646990 5:+53048951 None:intergenic
ATGAATCTTGCACTGCATGG+TGG 0.677136 5:+53049130 None:intergenic
ACCACAAAAGCCATTCATGG+TGG 0.707798 5:-53049106 MsG0580027099.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATATATTATATTTAT+AGG - Chr5:53048710-53048729 MsG0580027099.01.T01:intron 0.0%
!! TATTATTATTGTTATGAATA+TGG - Chr5:53048608-53048627 MsG0580027099.01.T01:intron 10.0%
!!! ATTTTTATGAAATAGTATTT+CGG - Chr5:53048452-53048471 MsG0580027099.01.T01:intron 10.0%
!! ATAATTTAGGTAATAAATTG+AGG + Chr5:53047768-53047787 None:intergenic 15.0%
!! GAGAATCTATAAATAATTAA+TGG + Chr5:53048822-53048841 None:intergenic 15.0%
!! TCTGATACTATATTAAAATT+TGG - Chr5:53048295-53048314 MsG0580027099.01.T01:intron 15.0%
!!! ATAAGATATTCACTATATTT+TGG + Chr5:53047848-53047867 None:intergenic 15.0%
!!! TTTTTATGAAATAGTATTTC+GGG - Chr5:53048453-53048472 MsG0580027099.01.T01:intron 15.0%
!! AAATTTGAATTTGTAGTGTT+TGG - Chr5:53047967-53047986 MsG0580027099.01.T01:CDS 20.0%
!! AAGTCCAAAAACATTAAAAT+AGG + Chr5:53048743-53048762 None:intergenic 20.0%
!! AATAGTATAGAGATAATTCA+GGG - Chr5:53048362-53048381 MsG0580027099.01.T01:intron 20.0%
!! AGTCCAAAAACATTAAAATA+GGG + Chr5:53048742-53048761 None:intergenic 20.0%
!! ATTATTTATAGATTCTCTCA+AGG - Chr5:53048825-53048844 MsG0580027099.01.T01:intron 20.0%
!! TAAATAGTAAACCTTCAATT+TGG + Chr5:53048418-53048437 None:intergenic 20.0%
!!! AACAAAAAATCAATTTTCCT+TGG - Chr5:53047358-53047377 MsG0580027099.01.T01:intron 20.0%
!!! AACTAAAAAAAAGACCATTT+TGG + Chr5:53048194-53048213 None:intergenic 20.0%
!!! AAGGAAAATTGATTTTTTGT+TGG + Chr5:53047359-53047378 None:intergenic 20.0%
!!! AATAATAATACCTTTGAAGA+GGG + Chr5:53048598-53048617 None:intergenic 20.0%
!!! AGGAAAATTGATTTTTTGTT+GGG + Chr5:53047358-53047377 None:intergenic 20.0%
!!! TTATTTTTACTAGCTTATAG+AGG + Chr5:53048142-53048161 None:intergenic 20.0%
! AAAAATAAGCTATAAGGTCA+TGG - Chr5:53048154-53048173 MsG0580027099.01.T01:intron 25.0%
! AAAATAAGCTATAAGGTCAT+GGG - Chr5:53048155-53048174 MsG0580027099.01.T01:intron 25.0%
! AATTGTTTAGTTATGGCTTA+TGG - Chr5:53048929-53048948 MsG0580027099.01.T01:CDS 25.0%
! ACAAACATATCAAAAAAACC+AGG + Chr5:53047664-53047683 None:intergenic 25.0%
! GAATAGTATAGAGATAATTC+AGG - Chr5:53048361-53048380 MsG0580027099.01.T01:intron 25.0%
! GCTAGTAAAAATAAGCTATA+AGG - Chr5:53048148-53048167 MsG0580027099.01.T01:intron 25.0%
! TCAGGAGATTGTAATAATTT+AGG + Chr5:53047781-53047800 None:intergenic 25.0%
!! AGAGATTTTCCATATAATGT+TGG - Chr5:53049299-53049318 MsG0580027099.01.T01:five_prime_UTR 25.0%
!! CAATAATAATACCTTTGAAG+AGG + Chr5:53048599-53048618 None:intergenic 25.0%
!! TCTTATAAGTTAGCTTATAG+CGG - Chr5:53047862-53047881 MsG0580027099.01.T01:intron 25.0%
!! TTTTCATTTACTATTTGCAG+AGG - Chr5:53049198-53049217 MsG0580027099.01.T01:CDS 25.0%
!!! GGAAAATTGATTTTTTGTTG+GGG + Chr5:53047357-53047376 None:intergenic 25.0%
!!! GTACCCTATTTTAATGTTTT+TGG - Chr5:53048736-53048755 MsG0580027099.01.T01:intron 25.0%
!!! TTACCATTTTAGTTTGCTTA+CGG - Chr5:53049163-53049182 MsG0580027099.01.T01:CDS 25.0%
!!! TTTTGTTTATGGTTTTCTTG+AGG - Chr5:53049073-53049092 MsG0580027099.01.T01:CDS 25.0%
!!! TTTTTCAATTAAGGCTACAA+GGG - Chr5:53048060-53048079 MsG0580027099.01.T01:intron 25.0%
!!! TTTTTTCAATTAAGGCTACA+AGG - Chr5:53048059-53048078 MsG0580027099.01.T01:intron 25.0%
AAAATGAAGAACCAACTTGT+GGG - Chr5:53048861-53048880 MsG0580027099.01.T01:CDS 30.0%
AACTTTCACTATCTGCTATT+TGG + Chr5:53048389-53048408 None:intergenic 30.0%
AAGAGACTACCAACATTATA+TGG + Chr5:53049311-53049330 None:intergenic 30.0%
ATAGCAGATAGTGAAAGTTT+AGG - Chr5:53048390-53048409 MsG0580027099.01.T01:intron 30.0%
CTAACTTTACCGTACAAAAT+CGG - Chr5:53048325-53048344 MsG0580027099.01.T01:intron 30.0%
GTGATTGAATTTGTAGTGTT+TGG - Chr5:53047942-53047961 MsG0580027099.01.T01:intron 30.0%
TAAAATGAAGAACCAACTTG+TGG - Chr5:53048860-53048879 MsG0580027099.01.T01:CDS 30.0%
TACTATTTATCACCTCTCTT+AGG + Chr5:53048224-53048243 None:intergenic 30.0%
TAGCAGATAGTGAAAGTTTA+GGG - Chr5:53048391-53048410 MsG0580027099.01.T01:intron 30.0%
TCGCTTGAATTGTTTAGTTA+TGG - Chr5:53048922-53048941 MsG0580027099.01.T01:CDS 30.0%
TGTAGTGTTTGGTAAAATAG+TGG - Chr5:53047978-53047997 MsG0580027099.01.T01:CDS 30.0%
TTCTTAGATATGATGAAGTC+AGG - Chr5:53048645-53048664 MsG0580027099.01.T01:intron 30.0%
! GTATCACTGTTTTACTTGTT+TGG - Chr5:53049110-53049129 MsG0580027099.01.T01:CDS 30.0%
! TAACAAACCTTTCTGAAAGT+AGG + Chr5:53047715-53047734 None:intergenic 30.0%
! TTATGGCTTATGGTACTTTT+TGG - Chr5:53048939-53048958 MsG0580027099.01.T01:CDS 30.0%
! TTCTTGAGGTAAGGATTTTT+GGG - Chr5:53049087-53049106 MsG0580027099.01.T01:CDS 30.0%
! TTTATGGTTTTCTTGAGGTA+AGG - Chr5:53049078-53049097 MsG0580027099.01.T01:CDS 30.0%
! TTTCTTGAGGTAAGGATTTT+TGG - Chr5:53049086-53049105 MsG0580027099.01.T01:CDS 30.0%
!! AATATGGTGCTGTAGAAATT+TGG - Chr5:53049006-53049025 MsG0580027099.01.T01:CDS 30.0%
!! CTATTTGTTATTGCTGAGAA+CGG - Chr5:53048484-53048503 MsG0580027099.01.T01:intron 30.0%
!! TCTATCAAACCGATTTTGTA+CGG + Chr5:53048337-53048356 None:intergenic 30.0%
!! TTGTTCTTGCTTTTGTTGAA+AGG - Chr5:53047680-53047699 MsG0580027099.01.T01:intron 30.0%
AAGTTTAGGGACCAAATTGA+AGG - Chr5:53048404-53048423 MsG0580027099.01.T01:intron 35.0%
AGCTCGTCAAACAATTTATC+AGG + Chr5:53047799-53047818 None:intergenic 35.0%
AGGGTTTGATTCTAAGTCTT+TGG + Chr5:53047384-53047403 None:intergenic 35.0%
CAAAGAAGACTCCTGAATAT+TGG - Chr5:53049225-53049244 MsG0580027099.01.T01:CDS 35.0%
CCAAAACCAACTTCATGATA+TGG - Chr5:53047282-53047301 MsG0580027099.01.T01:CDS 35.0%
GTTTAGACCTACTTTCAGAA+AGG - Chr5:53047705-53047724 MsG0580027099.01.T01:intron 35.0%
TACTTGTTTGGAGAAATCGA+AGG - Chr5:53049122-53049141 MsG0580027099.01.T01:CDS 35.0%
TAGTTCAATGAACCTAAGAG+AGG - Chr5:53048209-53048228 MsG0580027099.01.T01:intron 35.0%
TGGTGCTTTGTCTTATCTTT+GGG - Chr5:53047621-53047640 MsG0580027099.01.T01:intron 35.0%
TGTGTTTGTGAGATTTCAGT+TGG - Chr5:53048891-53048910 MsG0580027099.01.T01:CDS 35.0%
TTGCCGTAAGCAAACTAAAA+TGG + Chr5:53049169-53049188 None:intergenic 35.0%
TTGCTGAGAACGGTTTATTA+TGG - Chr5:53048494-53048513 MsG0580027099.01.T01:intron 35.0%
! CGATTTTGTACGGTAAAGTT+AGG + Chr5:53048327-53048346 None:intergenic 35.0%
! TCTTGAGGTAAGGATTTTTG+GGG - Chr5:53049088-53049107 MsG0580027099.01.T01:CDS 35.0%
! TTGGTGCTTTGTCTTATCTT+TGG - Chr5:53047620-53047639 MsG0580027099.01.T01:intron 35.0%
!! AGCTGTGCAGATTTTGTTTA+TGG - Chr5:53049062-53049081 MsG0580027099.01.T01:CDS 35.0%
!! CCATATCATGAAGTTGGTTT+TGG + Chr5:53047285-53047304 None:intergenic 35.0%
!! CTCCTGAATATTGGCTTATA+TGG - Chr5:53049234-53049253 MsG0580027099.01.T01:CDS 35.0%
!! CTGAATATTGGCTTATATGG+CGG - Chr5:53049237-53049256 MsG0580027099.01.T01:CDS 35.0%
!! TGAGATTTCAGTTGGTCTTT+CGG - Chr5:53048899-53048918 MsG0580027099.01.T01:CDS 35.0%
!!! ATGAAGTTGGTTTTGGTTTG+TGG + Chr5:53047278-53047297 None:intergenic 35.0%
!!! GATTTTTTGTTGGGGTTGTA+GGG + Chr5:53047349-53047368 None:intergenic 35.0%
!!! GGCAGGATGATTTTGTTTTA+GGG - Chr5:53048515-53048534 MsG0580027099.01.T01:intron 35.0%
!!! TGAAGTTGGTTTTGGTTTGT+GGG + Chr5:53047277-53047296 None:intergenic 35.0%
!!! TGATTTTTTGTTGGGGTTGT+AGG + Chr5:53047350-53047369 None:intergenic 35.0%
!!! TGGCAGGATGATTTTGTTTT+AGG - Chr5:53048514-53048533 MsG0580027099.01.T01:intron 35.0%
!!! TTTGTTTTAGGGAAGAAGCT+GGG - Chr5:53048526-53048545 MsG0580027099.01.T01:intron 35.0%
!!! TTTTGTTTTAGGGAAGAAGC+TGG - Chr5:53048525-53048544 MsG0580027099.01.T01:intron 35.0%
AATCCATTCACCACCATGAA+TGG + Chr5:53047458-53047477 None:intergenic 40.0%
AATTCCTTTGGTTGCAACAG+TGG + Chr5:53047308-53047327 None:intergenic 40.0%
ACATTCAAGCCACTAGACTT+AGG + Chr5:53047574-53047593 None:intergenic 40.0%
ACTCTGCAATAGATCAGCTA+AGG + Chr5:53049279-53049298 None:intergenic 40.0%
ACTGTTGCAACCAAAGGAAT+TGG - Chr5:53047307-53047326 MsG0580027099.01.T01:CDS 40.0%
ATAAGGTCATGGGAAAGTGA+CGG - Chr5:53048165-53048184 MsG0580027099.01.T01:intron 40.0%
ATCACCACAAAAGCCATTCA+TGG - Chr5:53047442-53047461 MsG0580027099.01.T01:intron 40.0%
CAAAAGCAAGAACAACACCA+GGG + Chr5:53047603-53047622 None:intergenic 40.0%
CAACACCAACACCTACAAAA+AGG + Chr5:53047498-53047517 None:intergenic 40.0%
CGCCATATAAGCCAATATTC+AGG + Chr5:53049239-53049258 None:intergenic 40.0%
CTTTGTGACTCCAATTCCTT+TGG + Chr5:53047320-53047339 None:intergenic 40.0%
GAAAGTGACGGTTACCAAAA+TGG - Chr5:53048177-53048196 MsG0580027099.01.T01:intron 40.0%
TGAGAACGGTTTATTATGGC+AGG - Chr5:53048498-53048517 MsG0580027099.01.T01:intron 40.0%
TGATTCTAAGTCTTTGGCCA+AGG + Chr5:53047378-53047397 None:intergenic 40.0%
TTGAAGAAGGCGACTGAATA+TGG - Chr5:53048990-53049009 MsG0580027099.01.T01:CDS 40.0%
! CACAACCTTTTTGTAGGTGT+TGG - Chr5:53047490-53047509 MsG0580027099.01.T01:CDS 40.0%
! TCAGCTCACAACCTTTTTGT+AGG - Chr5:53047484-53047503 MsG0580027099.01.T01:CDS 40.0%
!! AGGTGACTTAGTCTTGAAGA+AGG - Chr5:53048977-53048996 MsG0580027099.01.T01:CDS 40.0%
!! TACCTTTGAAGAGGGCTTTT+TGG + Chr5:53048590-53048609 None:intergenic 40.0%
!!! ACTTTTTGGTTCTCACTGGA+AGG - Chr5:53048953-53048972 MsG0580027099.01.T01:CDS 40.0%
!!! CTTTTTGTAGGTGTTGGTGT+TGG - Chr5:53047496-53047515 MsG0580027099.01.T01:CDS 40.0%
!!! TGGTACTTTTTGGTTCTCAC+TGG - Chr5:53048949-53048968 MsG0580027099.01.T01:CDS 40.0%
!!! TTGTTTTAGGGAAGAAGCTG+GGG - Chr5:53048527-53048546 MsG0580027099.01.T01:intron 40.0%
AAAAAACCAGGAGCAACACC+AGG + Chr5:53047652-53047671 None:intergenic 45.0%
ACCACAAAAGCCATTCATGG+TGG - Chr5:53047445-53047464 MsG0580027099.01.T01:intron 45.0%
AGCACTCTTCCTAAGTCTAG+TGG - Chr5:53047562-53047581 MsG0580027099.01.T01:CDS 45.0%
AGCCAAAAAGCCCTCTTCAA+AGG - Chr5:53048585-53048604 MsG0580027099.01.T01:intron 45.0%
ATGAAGTCAGGATACGAGCT+GGG - Chr5:53048657-53048676 MsG0580027099.01.T01:intron 45.0%
ATGAATCTTGCACTGCATGG+TGG + Chr5:53047424-53047443 None:intergenic 45.0%
CACATGCTATACCCACAAGT+TGG + Chr5:53048875-53048894 None:intergenic 45.0%
CAGTGGCCATATCATGAAGT+TGG + Chr5:53047291-53047310 None:intergenic 45.0%
CCAAAAGCAAGAACAACACC+AGG + Chr5:53047604-53047623 None:intergenic 45.0%
CTGCAATAGATCAGCTAAGG+TGG + Chr5:53049276-53049295 None:intergenic 45.0%
GCTTATATGGCGGTTTGAAG+GGG - Chr5:53049247-53049266 MsG0580027099.01.T01:CDS 45.0%
GGCTTATATGGCGGTTTGAA+GGG - Chr5:53049246-53049265 MsG0580027099.01.T01:CDS 45.0%
GTGATGAATCTTGCACTGCA+TGG + Chr5:53047427-53047446 None:intergenic 45.0%
TCTTATCTTTGGGCTACACC+TGG - Chr5:53047631-53047650 MsG0580027099.01.T01:intron 45.0%
TGGCTTATATGGCGGTTTGA+AGG - Chr5:53049245-53049264 MsG0580027099.01.T01:CDS 45.0%
! AAGCCATTCATGGTGGTGAA+TGG - Chr5:53047452-53047471 MsG0580027099.01.T01:intron 45.0%
! ACCACCATGAATGGCTTTTG+TGG + Chr5:53047449-53047468 None:intergenic 45.0%
! GGTGGTGGTTCATTGTTTGA+GGG + Chr5:53047403-53047422 None:intergenic 45.0%
! TTTTGTTGGGGTTGTAGGGA+GGG + Chr5:53047345-53047364 None:intergenic 45.0%
! TTTTTGTTGGGGTTGTAGGG+AGG + Chr5:53047346-53047365 None:intergenic 45.0%
!! TGGTGGTGGTTCATTGTTTG+AGG + Chr5:53047404-53047423 None:intergenic 45.0%
!! TTTGGTTCTCACTGGAAGGA+AGG - Chr5:53048957-53048976 MsG0580027099.01.T01:CDS 45.0%
!!! CCTGGTGTTGTTCTTGCTTT+TGG - Chr5:53047601-53047620 MsG0580027099.01.T01:intron 45.0%
!!! TGTTTTAGGGAAGAAGCTGG+GGG - Chr5:53048528-53048547 MsG0580027099.01.T01:intron 45.0%
!!! ATATTTATTTTTTTCAATTA+AGG - Chr5:53048051-53048070 MsG0580027099.01.T01:intron 5.0%
AATCTTGCACTGCATGGTGG+TGG + Chr5:53047421-53047440 None:intergenic 50.0%
ATCCATAACCCACATGTCCC+TGG - Chr5:53048259-53048278 MsG0580027099.01.T01:intron 50.0%
ATGGCCACTGTTGCAACCAA+AGG - Chr5:53047301-53047320 MsG0580027099.01.T01:CDS 50.0%
GATGAAGTCAGGATACGAGC+TGG - Chr5:53048656-53048675 MsG0580027099.01.T01:intron 50.0%
GGCTTGAATGTTACTGTCCC+TGG - Chr5:53047583-53047602 MsG0580027099.01.T01:intron 50.0%
TGAAGTCAGGATACGAGCTG+GGG - Chr5:53048658-53048677 MsG0580027099.01.T01:intron 50.0%
TGGACTTCCATGCACTGTGA+TGG - Chr5:53047516-53047535 MsG0580027099.01.T01:CDS 50.0%
! ATCCAGGGACATGTGGGTTA+TGG + Chr5:53048264-53048283 None:intergenic 50.0%
AAGCTGGGGGAGGGATCATT+TGG - Chr5:53048541-53048560 MsG0580027099.01.T01:intron 55.0%
CCACACTCCATCACAGTGCA+TGG + Chr5:53047526-53047545 None:intergenic 55.0%
GAAGTCAGGATACGAGCTGG+GGG - Chr5:53048659-53048678 MsG0580027099.01.T01:intron 55.0%
GTCTCGATCCAGGGACATGT+GGG + Chr5:53048270-53048289 None:intergenic 55.0%
TTAGGGAAGAAGCTGGGGGA+GGG - Chr5:53048532-53048551 MsG0580027099.01.T01:intron 55.0%
TTTAGGGAAGAAGCTGGGGG+AGG - Chr5:53048531-53048550 MsG0580027099.01.T01:intron 55.0%
! CCATGCACTGTGATGGAGTG+TGG - Chr5:53047523-53047542 MsG0580027099.01.T01:CDS 55.0%
CAGAGCCTCGTCTCGATCCA+GGG + Chr5:53048279-53048298 None:intergenic 60.0%
CATGTCCCTGGATCGAGACG+AGG - Chr5:53048271-53048290 MsG0580027099.01.T01:intron 60.0%
CGTCTCGATCCAGGGACATG+TGG + Chr5:53048271-53048290 None:intergenic 60.0%
TCAGAGCCTCGTCTCGATCC+AGG + Chr5:53048280-53048299 None:intergenic 60.0%
!! CTTGCACTGCATGGTGGTGG+TGG + Chr5:53047418-53047437 None:intergenic 60.0%
!! GCTACACCTGGTGTTGCTCC+TGG - Chr5:53047643-53047662 MsG0580027099.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 53047236 53049337 53047236 ID=MsG0580027099.01;Name=MsG0580027099.01
Chr5 mRNA 53047236 53049337 53047236 ID=MsG0580027099.01.T01;Parent=MsG0580027099.01;Name=MsG0580027099.01.T01;_AED=0.41;_eAED=0.42;_QI=65|1|0.75|1|1|1|4|0|250
Chr5 exon 53047236 53047355 53047236 ID=MsG0580027099.01.T01:exon:17476;Parent=MsG0580027099.01.T01
Chr5 exon 53047479 53047598 53047479 ID=MsG0580027099.01.T01:exon:17475;Parent=MsG0580027099.01.T01
Chr5 exon 53047967 53048053 53047967 ID=MsG0580027099.01.T01:exon:17474;Parent=MsG0580027099.01.T01
Chr5 exon 53048847 53049337 53048847 ID=MsG0580027099.01.T01:exon:17473;Parent=MsG0580027099.01.T01
Chr5 five_prime_UTR 53049273 53049337 53049273 ID=MsG0580027099.01.T01:five_prime_utr;Parent=MsG0580027099.01.T01
Chr5 CDS 53048847 53049272 53048847 ID=MsG0580027099.01.T01:cds;Parent=MsG0580027099.01.T01
Chr5 CDS 53047967 53048053 53047967 ID=MsG0580027099.01.T01:cds;Parent=MsG0580027099.01.T01
Chr5 CDS 53047479 53047598 53047479 ID=MsG0580027099.01.T01:cds;Parent=MsG0580027099.01.T01
Chr5 CDS 53047236 53047355 53047236 ID=MsG0580027099.01.T01:cds;Parent=MsG0580027099.01.T01
Gene Sequence

>MsG0580027099.01.T01

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCCTCCCTACAACCCCAACAAAAAATCAATTTTCCTTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGGTGAATGGATTCTTGAATCAGCTCACAACCTTTTTGTAGGTGTTGGTGTTGGACTTCCATGCACTGTGATGGAGTGTGGAGATATGATCTATAGAAGCACTCTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGAAAGGATGATTTTGTTTTAGGGAAGAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAAAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGCGGTTTGAAGGGGATGCCACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTTGGTAGTCTCTTTAATTAA

Protein sequence

>MsG0580027099.01.T01

MATVATKGIGVTKLPPYNPNKKSIFLGQRLRIKPSNNEPPPPCSARFITTKAIHGGEWILESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVGSLFN*