AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021420.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021420.01.T01 MTR_4g074210 98.206 223 4 0 1 223 1 223 6.90e-168 461
MsG0480021420.01.T02 MTR_4g074210 98.206 223 4 0 18 240 1 223 6.05e-168 462
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021420.01.T01 AT3G19900 57.576 231 80 4 1 223 2 222 1.75e-79 238
MsG0480021420.01.T01 AT3G19900 44.242 165 74 4 1 157 2 156 8.05e-31 112
MsG0480021420.01.T02 AT3G19900 57.576 231 80 4 18 240 2 222 1.73e-79 238
MsG0480021420.01.T02 AT3G19900 44.242 165 74 4 18 174 2 156 7.10e-31 112

Find 42 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGAAAGTATTAAATATT+TGG 0.129023 4:+57702725 None:intergenic
CATGGCCTACTTTCTCTATC+TGG 0.248930 4:-57702439 MsG0480021420.01.T01:intron
TTCTGAGGGTAGGCAGGGTA+TGG 0.306468 4:+57703643 None:intergenic
ATTTATGTTGAGCAACATTA+AGG 0.318243 4:+57702224 None:intergenic
GTCACTATCATCTGAATCAT+AGG 0.333924 4:+57702138 None:intergenic
TGACAAAGGAAGTATTAATA+AGG 0.343907 4:-57702290 MsG0480021420.01.T01:CDS
CAGTACAGTGAGTGACAATA+TGG 0.345555 4:-57702164 MsG0480021420.01.T01:CDS
AGTTGTATGACATGGTAAAA+AGG 0.351774 4:+57702548 None:intergenic
ATTAAGGAAGTCTAATCCTT+TGG 0.378502 4:+57702240 None:intergenic
TGGTTGGCCTCTAAGAATTC+AGG 0.385634 4:-57702320 MsG0480021420.01.T01:CDS
AGTCCATTAGTTCTGACTTA+AGG 0.397636 4:-57702785 MsG0480021420.01.T01:intron
AGTCCTTAAGTCAGAACTAA+TGG 0.402928 4:+57702782 None:intergenic
TTAAAATTCAGTTACAAAAG+TGG 0.404631 4:-57702521 MsG0480021420.01.T01:intron
TTATTAATACTTCCTTTGTC+AGG 0.425395 4:+57702292 None:intergenic
TAAAATTCAGTTACAAAAGT+GGG 0.439657 4:-57702520 MsG0480021420.01.T01:intron
CATATTGTCACTCACTGTAC+TGG 0.450902 4:+57702165 None:intergenic
TTTCTGCTTCTGTCTTTCAC+AGG 0.468194 4:-57703574 MsG0480021420.01.T01:intron
TAAGTCAGAACTAATGGACT+TGG 0.473513 4:+57702788 None:intergenic
GGATGATCCTGAATTCTTAG+AGG 0.485445 4:+57702313 None:intergenic
AAGGAAGTCTAATCCTTTGG+AGG 0.499539 4:+57702243 None:intergenic
TCATGCAGTCAGTATATTAG+AGG 0.514646 4:+57702821 None:intergenic
TCTGAGGGTAGGCAGGGTAT+GGG 0.517593 4:+57703644 None:intergenic
GGTAGGCAGGGTATGGGTGA+AGG 0.517634 4:+57703650 None:intergenic
GAAGGCTTCAATATTGTGAC+TGG 0.526745 4:+57703668 None:intergenic
TCACTATCATCTGAATCATA+GGG 0.536151 4:+57702139 None:intergenic
GAAATACAATCTTGCGTGTG+TGG 0.542124 4:+57702661 None:intergenic
TGTCCACCCACCAGTGTGGT+TGG 0.544450 4:-57702336 MsG0480021420.01.T01:CDS
CAGAATAATGATGAAATCAA+AGG 0.553196 4:-57702103 MsG0480021420.01.T01:CDS
GGATATCATTCTCCCTCCAA+AGG 0.564889 4:-57702256 MsG0480021420.01.T01:CDS
GCCATACTGCCAGAAAATGT+AGG 0.581926 4:-57702198 MsG0480021420.01.T01:CDS
TTCTTAGAGGCCAACCACAC+TGG 0.581947 4:+57702326 None:intergenic
AGGAAGTCTAATCCTTTGGA+GGG 0.584257 4:+57702244 None:intergenic
AAAATTCAGTTACAAAAGTG+GGG 0.590683 4:-57702519 MsG0480021420.01.T01:intron
TAAAACTAGTTTGAACTGCA+TGG 0.602047 4:-57702457 MsG0480021420.01.T01:intron
ATTCAGGATCATCCTGACAA+AGG 0.610154 4:-57702304 MsG0480021420.01.T01:CDS
TTAAAACTAGTTGTATGACA+TGG 0.615637 4:+57702540 None:intergenic
TTAGAGGCCAACCACACTGG+TGG 0.619099 4:+57702329 None:intergenic
AGGCCAACCACACTGGTGGG+TGG 0.635187 4:+57702333 None:intergenic
TAGAGGCCAACCACACTGGT+GGG 0.636716 4:+57702330 None:intergenic
ATTCAGTTACAAAAGTGGGG+TGG 0.679256 4:-57702516 MsG0480021420.01.T01:intron
ATTATGTCCACCCACCAGTG+TGG 0.725293 4:-57702340 MsG0480021420.01.T01:CDS
TTAAATATTTGGATTCCGCG+CGG 0.743317 4:+57702736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTAGAAATTTAATG+TGG + Chr4:57703652-57703671 None:intergenic 15.0%
!! ATATCATATGTAAATAGATT+GGG - Chr4:57703191-57703210 MsG0480021420.01.T01:intron 15.0%
!! TTAAAATATATGTTATAGGT+TGG - Chr4:57699832-57699851 MsG0480021420.01.T01:three_prime_UTR 15.0%
!!! ATTATTGTTAATATTTTCTG+AGG + Chr4:57699623-57699642 None:intergenic 15.0%
!!! TCAAGAAAGTATTAAATATT+TGG + Chr4:57700526-57700545 None:intergenic 15.0%
!!! TTATTGTTAATATTTTCTGA+GGG + Chr4:57699622-57699641 None:intergenic 15.0%
!!! TTCTACTTTTAATTGTTTAT+GGG - Chr4:57701387-57701406 MsG0480021420.01.T01:intron 15.0%
!!! TTTTTTTTAGAAAAATGATC+AGG - Chr4:57702106-57702125 MsG0480021420.01.T01:CDS 15.0%
!! AAAACTAAAAACAAGAAGAT+AGG + Chr4:57701898-57701917 None:intergenic 20.0%
!! AAACTAAAAACAAGAAGATA+GGG + Chr4:57701897-57701916 None:intergenic 20.0%
!! AATAAACTTCTCTTCAAATT+AGG - Chr4:57703664-57703683 MsG0480021420.01.T01:five_prime_UTR 20.0%
!! AATCAAGAGAATATATGTAA+AGG + Chr4:57701773-57701792 None:intergenic 20.0%
!! AATTATGTAACAGCAAAATA+AGG + Chr4:57702422-57702441 None:intergenic 20.0%
!! AGAGAAAAAAGCAATAAAAA+AGG + Chr4:57702357-57702376 None:intergenic 20.0%
!! ATAAACTTCTCTTCAAATTA+GGG - Chr4:57703665-57703684 MsG0480021420.01.T01:five_prime_UTR 20.0%
!! ATTTCAATAGAAATGTTAGA+AGG + Chr4:57703534-57703553 None:intergenic 20.0%
!! CATATCATATGTAAATAGAT+TGG - Chr4:57703190-57703209 MsG0480021420.01.T01:intron 20.0%
!! GAGAAAAAAGCAATAAAAAA+GGG + Chr4:57702356-57702375 None:intergenic 20.0%
!! GATTTATTATACGTTTATAC+TGG - Chr4:57703486-57703505 MsG0480021420.01.T01:intron 20.0%
!! TAAAATTCAGTTACAAAAGT+GGG - Chr4:57700728-57700747 MsG0480021420.01.T01:intron 20.0%
!! TAGAAATTCTTTGTAAGAAA+TGG - Chr4:57701359-57701378 MsG0480021420.01.T01:intron 20.0%
!! TATGTTAATAGATCTTAAGA+TGG - Chr4:57701676-57701695 MsG0480021420.01.T01:intron 20.0%
!! TTAAAATTCAGTTACAAAAG+TGG - Chr4:57700727-57700746 MsG0480021420.01.T01:intron 20.0%
!!! GCTATATTATACATGTTTTA+TGG + Chr4:57699802-57699821 None:intergenic 20.0%
!!! GTTCTACTTTTAATTGTTTA+TGG - Chr4:57701386-57701405 MsG0480021420.01.T01:intron 20.0%
!!! TATAAATCATTGACTGAAAT+CGG + Chr4:57700350-57700369 None:intergenic 20.0%
!!! TATATTGATTTTTGTTACGA+AGG - Chr4:57701255-57701274 MsG0480021420.01.T01:intron 20.0%
!!! TCTAAGATACAACATAAAAA+AGG - Chr4:57701581-57701600 MsG0480021420.01.T01:intron 20.0%
!!! TCTGCATGATTTTAATTATA+TGG - Chr4:57699947-57699966 MsG0480021420.01.T01:intron 20.0%
! AAAATTCAGTTACAAAAGTG+GGG - Chr4:57700729-57700748 MsG0480021420.01.T01:intron 25.0%
! AACTAAAAACAAGAAGATAG+GGG + Chr4:57701896-57701915 None:intergenic 25.0%
! AAGGTAAATATAAGAAATGC+AGG + Chr4:57702318-57702337 None:intergenic 25.0%
! AATATATATTATTGCTTCGC+CGG - Chr4:57701648-57701667 MsG0480021420.01.T01:intron 25.0%
! AATATATTCTTCTTCAGTCA+AGG + Chr4:57703045-57703064 None:intergenic 25.0%
! AATCTTCAAATATTGATCGT+CGG - Chr4:57700389-57700408 MsG0480021420.01.T01:intron 25.0%
! AATTTATGCTAGGAATTCAT+GGG - Chr4:57702438-57702457 MsG0480021420.01.T01:intron 25.0%
! ACATAATCATTAGAAGCTTA+TGG - Chr4:57702949-57702968 MsG0480021420.01.T01:intron 25.0%
! AGAAATGCTAGAATAATATG+TGG - Chr4:57701287-57701306 MsG0480021420.01.T01:intron 25.0%
! AGAACAGAAGAAAAAACAAA+AGG - Chr4:57702838-57702857 MsG0480021420.01.T01:intron 25.0%
! AGACATCAAGATAAAAACAA+AGG - Chr4:57702596-57702615 MsG0480021420.01.T01:intron 25.0%
! ATATATTCTTCTTCAGTCAA+GGG + Chr4:57703044-57703063 None:intergenic 25.0%
! ATATTTGAGCAAAATCTATC+TGG - Chr4:57701937-57701956 MsG0480021420.01.T01:intron 25.0%
! ATCAAAATGAAAACAGCTTA+TGG - Chr4:57702783-57702802 MsG0480021420.01.T01:intron 25.0%
! ATTTATGTTGAGCAACATTA+AGG + Chr4:57701027-57701046 None:intergenic 25.0%
! CAAATAACAAGAAGTTAGAA+GGG + Chr4:57703313-57703332 None:intergenic 25.0%
! CAGAATAATGATGAAATCAA+AGG - Chr4:57701145-57701164 MsG0480021420.01.T01:intron 25.0%
! CCAAAATTACATCTAATGTA+GGG + Chr4:57701497-57701516 None:intergenic 25.0%
! GACATCAAGATAAAAACAAA+GGG - Chr4:57702597-57702616 MsG0480021420.01.T01:intron 25.0%
! GATCTATTAACATACATTTC+CGG + Chr4:57701670-57701689 None:intergenic 25.0%
! GTGAGATGATAAAATATGTT+TGG + Chr4:57701619-57701638 None:intergenic 25.0%
! GTGTGGATAAAAAACAAATT+GGG + Chr4:57700573-57700592 None:intergenic 25.0%
! GTTTGTATAAAGTAGTATCT+CGG - Chr4:57702892-57702911 MsG0480021420.01.T01:intron 25.0%
! TAAACTTCTCTTCAAATTAG+GGG - Chr4:57703666-57703685 MsG0480021420.01.T01:five_prime_UTR 25.0%
! TAAGATATTCTTCTTATCGA+TGG - Chr4:57700193-57700212 MsG0480021420.01.T01:CDS 25.0%
! TAATTTATGCTAGGAATTCA+TGG - Chr4:57702437-57702456 MsG0480021420.01.T01:intron 25.0%
! TGTAAACAAACAGAAGAAAT+AGG + Chr4:57703592-57703611 None:intergenic 25.0%
! TGTGGATAAAAAACAAATTG+GGG + Chr4:57700572-57700591 None:intergenic 25.0%
! TGTGTGGATAAAAAACAAAT+TGG + Chr4:57700574-57700593 None:intergenic 25.0%
! TGTTTGTCAATTTGTGAAAT+GGG + Chr4:57702870-57702889 None:intergenic 25.0%
! TTAAAACTAGTTGTATGACA+TGG + Chr4:57700711-57700730 None:intergenic 25.0%
! TTATTAATACTTCCTTTGTC+AGG + Chr4:57700959-57700978 None:intergenic 25.0%
! TTGTTTGTCAATTTGTGAAA+TGG + Chr4:57702871-57702890 None:intergenic 25.0%
! TTTGCCAAAACATATGATTA+AGG + Chr4:57701966-57701985 None:intergenic 25.0%
!! ATTAATAAGGCTCAATTTTC+AGG - Chr4:57700971-57700990 MsG0480021420.01.T01:intron 25.0%
!! CTGAAGAAGAATATATTTTG+AGG - Chr4:57703048-57703067 MsG0480021420.01.T01:intron 25.0%
!! TGTGAGCATTTTTATAGATA+TGG - Chr4:57703341-57703360 MsG0480021420.01.T01:intron 25.0%
!!! TGACAAAGGAAGTATTAATA+AGG - Chr4:57700958-57700977 MsG0480021420.01.T01:intron 25.0%
!!! TGAGTTTTATTGTTTTCTGT+TGG - Chr4:57700001-57700020 MsG0480021420.01.T01:intron 25.0%
!!! TTCTGTTGGAATTTTAGTAT+TGG - Chr4:57700015-57700034 MsG0480021420.01.T01:intron 25.0%
!!! TTTCTCTATCTGGTTTTTTT+TGG - Chr4:57700819-57700838 MsG0480021420.01.T01:intron 25.0%
AAAAACCAGATAGAGAAAGT+AGG + Chr4:57700817-57700836 None:intergenic 30.0%
AACTAACCTTCTTAATCAAC+TGG + Chr4:57702250-57702269 None:intergenic 30.0%
AATTGGTCAAGAATGGTTAT+TGG + Chr4:57702721-57702740 None:intergenic 30.0%
ACAAAAAAGAAACATGTCTG+TGG + Chr4:57699878-57699897 None:intergenic 30.0%
ACTCTTATCAGGAACAAATA+TGG - Chr4:57702209-57702228 MsG0480021420.01.T01:CDS 30.0%
AGTTGTATGACATGGTAAAA+AGG + Chr4:57700703-57700722 None:intergenic 30.0%
ATGCTAGAATAATATGTGGT+AGG - Chr4:57701291-57701310 MsG0480021420.01.T01:intron 30.0%
ATGTGAAATCTTAGTTTCGA+TGG - Chr4:57701825-57701844 MsG0480021420.01.T01:intron 30.0%
ATTAAGGAAGTCTAATCCTT+TGG + Chr4:57701011-57701030 None:intergenic 30.0%
ATTCTGCCAATATTGTATGA+AGG + Chr4:57703220-57703239 None:intergenic 30.0%
CAGACCATTATAGAAACAAA+AGG + Chr4:57700219-57700238 None:intergenic 30.0%
CCAAATAACAAGAAGTTAGA+AGG + Chr4:57703314-57703333 None:intergenic 30.0%
CGTTGAATGAAAAACAGAAA+TGG - Chr4:57700281-57700300 MsG0480021420.01.T01:intron 30.0%
CTCTTATCAGGAACAAATAT+GGG - Chr4:57702210-57702229 MsG0480021420.01.T01:CDS 30.0%
CTGACTCTTAGTTAGAATAA+TGG - Chr4:57702675-57702694 MsG0480021420.01.T01:intron 30.0%
GAAGAAAAAACAAAAGGCAA+AGG - Chr4:57702844-57702863 MsG0480021420.01.T01:intron 30.0%
GCCAAAATTACATCTAATGT+AGG + Chr4:57701498-57701517 None:intergenic 30.0%
GCTGTTACATAATTTATGCT+AGG - Chr4:57702428-57702447 MsG0480021420.01.T01:intron 30.0%
GTGGATAAAAAACAAATTGG+GGG + Chr4:57700571-57700590 None:intergenic 30.0%
TAATAGTACAACTAAGTGTC+TGG + Chr4:57702926-57702945 None:intergenic 30.0%
TACATGCAGTCATTCAAAAA+GGG + Chr4:57701192-57701211 None:intergenic 30.0%
TATATATGTATGAGAGAGAG+AGG + Chr4:57699716-57699735 None:intergenic 30.0%
TATATTCTTCTTCAGTCAAG+GGG + Chr4:57703043-57703062 None:intergenic 30.0%
TCACTATCATCTGAATCATA+GGG + Chr4:57701112-57701131 None:intergenic 30.0%
TCATTGTGTTATCCTATTAC+TGG - Chr4:57703698-57703717 MsG0480021420.01.T01:five_prime_UTR 30.0%
TGAACTGAAATTCATCTCAA+AGG - Chr4:57703415-57703434 MsG0480021420.01.T01:intron 30.0%
TGACAGAATTCCATTAGAAT+TGG + Chr4:57702738-57702757 None:intergenic 30.0%
TGCAAACTCGTTAAAATGTT+GGG - Chr4:57703082-57703101 MsG0480021420.01.T01:intron 30.0%
TTACAGTAGTGGTGTAAATT+TGG - Chr4:57703607-57703626 MsG0480021420.01.T01:five_prime_UTR 30.0%
TTACATGCAGTCATTCAAAA+AGG + Chr4:57701193-57701212 None:intergenic 30.0%
TTATACAAGCATTTCCATAG+TGG + Chr4:57702977-57702996 None:intergenic 30.0%
TTGCAAACTCGTTAAAATGT+TGG - Chr4:57703081-57703100 MsG0480021420.01.T01:intron 30.0%
TTGGCTTATGAATGTATTAG+AGG - Chr4:57700034-57700053 MsG0480021420.01.T01:intron 30.0%
TTTCTATTGAAATCACTTCC+AGG - Chr4:57703541-57703560 MsG0480021420.01.T01:intron 30.0%
! AAAAATAGGCCTACATTTTC+TGG + Chr4:57701062-57701081 None:intergenic 30.0%
! ATGTTGAAGCTCTTTTCAAA+TGG - Chr4:57701995-57702014 MsG0480021420.01.T01:intron 30.0%
! CAGCTTATGGATTTTTAATC+TGG - Chr4:57702796-57702815 MsG0480021420.01.T01:intron 30.0%
! CCCTACATTAGATGTAATTT+TGG - Chr4:57701494-57701513 MsG0480021420.01.T01:intron 30.0%
! CTCTTTTCAAATGGAAATAC+AGG - Chr4:57702004-57702023 MsG0480021420.01.T01:intron 30.0%
! GCTACCTTAATCATATGTTT+TGG - Chr4:57701959-57701978 MsG0480021420.01.T01:intron 30.0%
! TAAAACTAGTTTGAACTGCA+TGG - Chr4:57700791-57700810 MsG0480021420.01.T01:CDS 30.0%
! TTGTAAACTTTTGCTGATGT+TGG + Chr4:57703245-57703264 None:intergenic 30.0%
!! CCTTCTAACTTCTTGTTATT+TGG - Chr4:57703311-57703330 MsG0480021420.01.T01:intron 30.0%
!! TGTTAATATTTTCTGAGGGT+AGG + Chr4:57699618-57699637 None:intergenic 30.0%
!!! ATGGCCTTTTGTTTCTATAA+TGG - Chr4:57700212-57700231 MsG0480021420.01.T01:CDS 30.0%
!!! TTTTTTATGAAACTGAGTGC+AGG - Chr4:57700872-57700891 MsG0480021420.01.T01:intron 30.0%
AAATTGGGGGTTTGAAAAGT+AGG + Chr4:57700558-57700577 None:intergenic 35.0%
AATGGTCTGTTTATCCTATC+TGG - Chr4:57700230-57700249 MsG0480021420.01.T01:intron 35.0%
AATTGGGGGTTTGAAAAGTA+GGG + Chr4:57700557-57700576 None:intergenic 35.0%
ACAAACAGAAGAAATAGGTC+AGG + Chr4:57703587-57703606 None:intergenic 35.0%
ACAGATGATTCAAGGTTTAG+TGG - Chr4:57702173-57702192 MsG0480021420.01.T01:CDS 35.0%
ACTGAAATTCATCTCAAAGG+TGG - Chr4:57703418-57703437 MsG0480021420.01.T01:intron 35.0%
AGATCTTAAGATGGTGAACT+AGG - Chr4:57701685-57701704 MsG0480021420.01.T01:intron 35.0%
AGTCCTTAAGTCAGAACTAA+TGG + Chr4:57700469-57700488 None:intergenic 35.0%
ATGATCAGGTAAATAGTGAC+AGG - Chr4:57702120-57702139 MsG0480021420.01.T01:CDS 35.0%
ATTTCTAAGTTCACCACCTT+AGG - Chr4:57700071-57700090 MsG0480021420.01.T01:intron 35.0%
CACCACTTATAATCGTCTTT+CGG + Chr4:57701520-57701539 None:intergenic 35.0%
CCAAGAAGTTCCCAAAAAAA+GGG + Chr4:57703465-57703484 None:intergenic 35.0%
CCATTAGAATTGGTCAAGAA+TGG + Chr4:57702728-57702747 None:intergenic 35.0%
CCATTCTTGACCAATTCTAA+TGG - Chr4:57702725-57702744 MsG0480021420.01.T01:intron 35.0%
CTCACTGTACTGGAAAAAAT+AGG + Chr4:57701076-57701095 None:intergenic 35.0%
CTTCTGTTTGTTTACAGTAG+TGG - Chr4:57703596-57703615 MsG0480021420.01.T01:five_prime_UTR 35.0%
GAAAGTCTCGAGAAAATAGT+CGG - Chr4:57702149-57702168 MsG0480021420.01.T01:CDS 35.0%
GAACAAAAAATACAGTTGCC+TGG + Chr4:57703562-57703581 None:intergenic 35.0%
GCAAACTCGTTAAAATGTTG+GGG - Chr4:57703083-57703102 MsG0480021420.01.T01:intron 35.0%
GGTTATTGGATAAGTCAAAG+TGG + Chr4:57702707-57702726 None:intergenic 35.0%
GTCACTATCATCTGAATCAT+AGG + Chr4:57701113-57701132 None:intergenic 35.0%
TCATGCAGTCAGTATATTAG+AGG + Chr4:57700430-57700449 None:intergenic 35.0%
TGATGTCCAGTTGATTAAGA+AGG - Chr4:57702241-57702260 MsG0480021420.01.T01:CDS 35.0%
TTAAATATTTGGATTCCGCG+CGG + Chr4:57700515-57700534 None:intergenic 35.0%
TTTATAGATATGGACGAGTC+TGG - Chr4:57703351-57703370 MsG0480021420.01.T01:intron 35.0%
! AATCATTGACTGAAATCGGA+TGG + Chr4:57700346-57700365 None:intergenic 35.0%
!! AACTTCTTGTTATTTGGTGC+AGG - Chr4:57703317-57703336 MsG0480021420.01.T01:intron 35.0%
!! AATTGTTTATGGGAGTGTCT+CGG - Chr4:57701397-57701416 MsG0480021420.01.T01:intron 35.0%
!! AGTCCATTAGTTCTGACTTA+AGG - Chr4:57700463-57700482 MsG0480021420.01.T01:intron 35.0%
!! GAAGGTTAGTTTCTTACAAG+TGG - Chr4:57702259-57702278 MsG0480021420.01.T01:CDS 35.0%
!! TAAGTCAGAACTAATGGACT+TGG + Chr4:57700463-57700482 None:intergenic 35.0%
!! TACAACTAAGTGTCTGGTTT+TGG + Chr4:57702920-57702939 None:intergenic 35.0%
!!! CCTTTTTTTGGGAACTTCTT+GGG - Chr4:57703463-57703482 MsG0480021420.01.T01:intron 35.0%
!!! CTTTTTTTGGGAACTTCTTG+GGG - Chr4:57703464-57703483 MsG0480021420.01.T01:intron 35.0%
AACTTCCCACAAATCTGTCT+TGG + Chr4:57701562-57701581 None:intergenic 40.0%
AAGGAAGTCTAATCCTTTGG+AGG + Chr4:57701008-57701027 None:intergenic 40.0%
ACGTTCCAAGACAGATTTGT+GGG - Chr4:57701554-57701573 MsG0480021420.01.T01:intron 40.0%
AGAAGCTTATGGTACCACTA+TGG - Chr4:57702960-57702979 MsG0480021420.01.T01:intron 40.0%
AGAAGTTCCCAAAAAAAGGG+TGG + Chr4:57703462-57703481 None:intergenic 40.0%
AGGAAGTCTAATCCTTTGGA+GGG + Chr4:57701007-57701026 None:intergenic 40.0%
AGGGAGAGAAATTGAAGAGA+AGG + Chr4:57702337-57702356 None:intergenic 40.0%
ATTCAGGATCATCCTGACAA+AGG - Chr4:57700944-57700963 MsG0480021420.01.T01:intron 40.0%
ATTCAGTTACAAAAGTGGGG+TGG - Chr4:57700732-57700751 MsG0480021420.01.T01:intron 40.0%
CAGTACAGTGAGTGACAATA+TGG - Chr4:57701084-57701103 MsG0480021420.01.T01:CDS 40.0%
CATATTGTCACTCACTGTAC+TGG + Chr4:57701086-57701105 None:intergenic 40.0%
CCCAAGAAGTTCCCAAAAAA+AGG + Chr4:57703466-57703485 None:intergenic 40.0%
CGAAAGACGATTATAAGTGG+TGG - Chr4:57701518-57701537 MsG0480021420.01.T01:intron 40.0%
GAAATACAATCTTGCGTGTG+TGG + Chr4:57700590-57700609 None:intergenic 40.0%
GAAGGCTTCAATATTGTGAC+TGG + Chr4:57699583-57699602 None:intergenic 40.0%
GCAGAACTTAACACATCGTT+TGG + Chr4:57702394-57702413 None:intergenic 40.0%
GGATGATCCTGAATTCTTAG+AGG + Chr4:57700938-57700957 None:intergenic 40.0%
GGGACACCTTCATACAATAT+TGG - Chr4:57703211-57703230 MsG0480021420.01.T01:intron 40.0%
TACGTTCCAAGACAGATTTG+TGG - Chr4:57701553-57701572 MsG0480021420.01.T01:intron 40.0%
TAGTCGGTACAGATGATTCA+AGG - Chr4:57702165-57702184 MsG0480021420.01.T01:CDS 40.0%
TCCACATGACATTCATAGCA+AGG + Chr4:57702473-57702492 None:intergenic 40.0%
TGTTCCTGATAAGAGTAGCA+AGG + Chr4:57702205-57702224 None:intergenic 40.0%
TTCTTCCTGCAATGATGAAC+TGG - Chr4:57701798-57701817 MsG0480021420.01.T01:intron 40.0%
TTGACCTTGCTACTCTTATC+AGG - Chr4:57702198-57702217 MsG0480021420.01.T01:CDS 40.0%
TTGGATAAGTCAAAGTGGTG+AGG + Chr4:57702702-57702721 None:intergenic 40.0%
TTTCTGCTTCTGTCTTTCAC+AGG - Chr4:57699674-57699693 MsG0480021420.01.T01:three_prime_UTR 40.0%
! AATTTTACCTTCCCTATCCG+AGG + Chr4:57703155-57703174 None:intergenic 40.0%
! CAGATTGAGAGCACATCAAT+GGG + Chr4:57702067-57702086 None:intergenic 40.0%
! GAATGTCATGTGGAAGTACA+TGG - Chr4:57702479-57702498 MsG0480021420.01.T01:intron 40.0%
! TCCTTGCTATGAATGTCATG+TGG - Chr4:57702469-57702488 MsG0480021420.01.T01:intron 40.0%
!! AATATTTTCTGAGGGTAGGC+AGG + Chr4:57699614-57699633 None:intergenic 40.0%
!! ATATTTTCTGAGGGTAGGCA+GGG + Chr4:57699613-57699632 None:intergenic 40.0%
!!! CCCTTTTTTTGGGAACTTCT+TGG - Chr4:57703462-57703481 MsG0480021420.01.T01:intron 40.0%
CAAAGTCGAAAGAACGACCT+CGG - Chr4:57703135-57703154 MsG0480021420.01.T01:intron 45.0%
CATCCTAATCCATGCACCTA+AGG + Chr4:57700090-57700109 None:intergenic 45.0%
CATGGCCTACTTTCTCTATC+TGG - Chr4:57700809-57700828 MsG0480021420.01.T01:intron 45.0%
CCATTGATGTGCTCTCAATC+TGG - Chr4:57702065-57702084 MsG0480021420.01.T01:intron 45.0%
CTATCTGGATTCCTTGCAGT+CGG - Chr4:57700245-57700264 MsG0480021420.01.T01:intron 45.0%
CTGTCTTGGAACGTAAGATG+AGG + Chr4:57701548-57701567 None:intergenic 45.0%
GCCATACTGCCAGAAAATGT+AGG - Chr4:57701050-57701069 MsG0480021420.01.T01:CDS 45.0%
GGATATCATTCTCCCTCCAA+AGG - Chr4:57700992-57701011 MsG0480021420.01.T01:intron 45.0%
GGCCGAAAGACGATTATAAG+TGG - Chr4:57701515-57701534 MsG0480021420.01.T01:intron 45.0%
GTCGTTCTTTCGACTTTGCT+AGG + Chr4:57703133-57703152 None:intergenic 45.0%
TATCTGGATTCCTTGCAGTC+GGG - Chr4:57700246-57700265 MsG0480021420.01.T01:intron 45.0%
TCCAACCAGTTCATCATTGC+AGG + Chr4:57701806-57701825 None:intergenic 45.0%
TCCTGCAATGATGAACTGGT+TGG - Chr4:57701802-57701821 MsG0480021420.01.T01:intron 45.0%
! CCAGATTGAGAGCACATCAA+TGG + Chr4:57702068-57702087 None:intergenic 45.0%
! GGGGAGCTGTTTCACATATT+CGG - Chr4:57703102-57703121 MsG0480021420.01.T01:intron 45.0%
! GTGTGATTTTTCTAACCGCG+CGG - Chr4:57700497-57700516 MsG0480021420.01.T01:intron 45.0%
!! CTTAGGTGCATGGATTAGGA+TGG - Chr4:57700088-57700107 MsG0480021420.01.T01:intron 45.0%
!! GCCTACATTTTCTGGCAGTA+TGG + Chr4:57701054-57701073 None:intergenic 45.0%
!! TGGTTGGCCTCTAAGAATTC+AGG - Chr4:57700928-57700947 MsG0480021420.01.T01:intron 45.0%
!!! AGCAGCACCACCCTTTTTTT+GGG - Chr4:57703452-57703471 MsG0480021420.01.T01:intron 45.0%
!!! TAATTTTTAAAGAAAATAAA+AGG - Chr4:57699899-57699918 MsG0480021420.01.T01:CDS 5.0%
!!! TTTTTTAAAATATATGTTAT+AGG - Chr4:57699828-57699847 MsG0480021420.01.T01:three_prime_UTR 5.0%
AGTTCACCACCTTAGGTGCA+TGG - Chr4:57700078-57700097 MsG0480021420.01.T01:intron 50.0%
ATCTGGATTCCTTGCAGTCG+GGG - Chr4:57700247-57700266 MsG0480021420.01.T01:intron 50.0%
ATTATGTCCACCCACCAGTG+TGG - Chr4:57700908-57700927 MsG0480021420.01.T01:intron 50.0%
CCACCTTAGGTGCATGGATT+AGG - Chr4:57700084-57700103 MsG0480021420.01.T01:intron 50.0%
CCTAATCCATGCACCTAAGG+TGG + Chr4:57700087-57700106 None:intergenic 50.0%
CGAAAGAACGACCTCGGATA+GGG - Chr4:57703141-57703160 MsG0480021420.01.T01:intron 50.0%
CGACTGCAAGGAATCCAGAT+AGG + Chr4:57700247-57700266 None:intergenic 50.0%
TCGAAAGAACGACCTCGGAT+AGG - Chr4:57703140-57703159 MsG0480021420.01.T01:intron 50.0%
TTCTTAGAGGCCAACCACAC+TGG + Chr4:57700925-57700944 None:intergenic 50.0%
! CATGTGGAAGTACATGGAGC+AGG - Chr4:57702485-57702504 MsG0480021420.01.T01:intron 50.0%
!! GGTGCATGGATTAGGATGGA+TGG - Chr4:57700092-57700111 MsG0480021420.01.T01:intron 50.0%
!!! CAGCAGCACCACCCTTTTTT+TGG - Chr4:57703451-57703470 MsG0480021420.01.T01:intron 50.0%
AGAACGACCTCGGATAGGGA+AGG - Chr4:57703145-57703164 MsG0480021420.01.T01:intron 55.0%
TAGAGGCCAACCACACTGGT+GGG + Chr4:57700921-57700940 None:intergenic 55.0%
TCCAACTAACCCCGACTGCA+AGG + Chr4:57700259-57700278 None:intergenic 55.0%
TCTGAGGGTAGGCAGGGTAT+GGG + Chr4:57699607-57699626 None:intergenic 55.0%
TTAGAGGCCAACCACACTGG+TGG + Chr4:57700922-57700941 None:intergenic 55.0%
! TCCTTGCAGTCGGGGTTAGT+TGG - Chr4:57700255-57700274 MsG0480021420.01.T01:intron 55.0%
! TTCTGAGGGTAGGCAGGGTA+TGG + Chr4:57699608-57699627 None:intergenic 55.0%
!! GTTTATGGGAGTGTCTCGGC+AGG - Chr4:57701401-57701420 MsG0480021420.01.T01:intron 55.0%
GGTAGGCAGGGTATGGGTGA+AGG + Chr4:57699601-57699620 None:intergenic 60.0%
TGTCCACCCACCAGTGTGGT+TGG - Chr4:57700912-57700931 MsG0480021420.01.T01:intron 60.0%
AGGCCAACCACACTGGTGGG+TGG + Chr4:57700918-57700937 None:intergenic 65.0%
CTGGTGCACGTGCGAACGAG+TGG - Chr4:57703370-57703389 MsG0480021420.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 57699552 57703718 57699552 ID=MsG0480021420.01;Name=MsG0480021420.01
Chr4 mRNA 57699552 57703718 57699552 ID=MsG0480021420.01.T01;Parent=MsG0480021420.01;Name=MsG0480021420.01.T01;_AED=0.49;_eAED=0.49;_QI=152|1|1|1|0.8|0.66|6|314|223
Chr4 exon 57702102 57702376 57702102 ID=MsG0480021420.01.T01:exon:19395;Parent=MsG0480021420.01.T01
Chr4 exon 57703575 57703718 57703575 ID=MsG0480021420.01.T01:exon:19394;Parent=MsG0480021420.01.T01
Chr4 five_prime_UTR 57703575 57703718 57703575 ID=MsG0480021420.01.T01:five_prime_utr;Parent=MsG0480021420.01.T01
Chr4 five_prime_UTR 57702369 57702376 57702369 ID=MsG0480021420.01.T01:five_prime_utr;Parent=MsG0480021420.01.T01
Chr4 CDS 57702102 57702368 57702102 ID=MsG0480021420.01.T01:cds;Parent=MsG0480021420.01.T01
Chr4 CDS 57701008 57701154 57701008 ID=MsG0480021420.01.T01:cds;Parent=MsG0480021420.01.T01
Chr4 CDS 57700764 57700820 57700764 ID=MsG0480021420.01.T01:cds;Parent=MsG0480021420.01.T01
Chr4 CDS 57700104 57700238 57700104 ID=MsG0480021420.01.T01:cds;Parent=MsG0480021420.01.T01
Chr4 CDS 57699866 57699931 57699866 ID=MsG0480021420.01.T01:cds;Parent=MsG0480021420.01.T01
Chr4 three_prime_UTR 57699552 57699865 57699552 ID=MsG0480021420.01.T01:three_prime_utr;Parent=MsG0480021420.01.T01
Chr4 mRNA 57699552 57702853 57699552 ID=MsG0480021420.01.T02;Parent=MsG0480021420.01;Name=MsG0480021420.01.T02;_AED=0.49;_eAED=0.49;_QI=434|1|1|1|1|1|5|314|240
Chr4 exon 57702102 57702853 57702102 ID=MsG0480021420.01.T02:exon:19400;Parent=MsG0480021420.01.T02
Chr4 five_prime_UTR 57702420 57702853 57702420 ID=MsG0480021420.01.T02:five_prime_utr;Parent=MsG0480021420.01.T02
Chr4 CDS 57702102 57702419 57702102 ID=MsG0480021420.01.T02:cds;Parent=MsG0480021420.01.T02
Chr4 CDS 57701008 57701154 57701008 ID=MsG0480021420.01.T02:cds;Parent=MsG0480021420.01.T02
Chr4 CDS 57700764 57700820 57700764 ID=MsG0480021420.01.T02:cds;Parent=MsG0480021420.01.T02
Chr4 CDS 57700104 57700238 57700104 ID=MsG0480021420.01.T02:cds;Parent=MsG0480021420.01.T02
Chr4 CDS 57699866 57699931 57699866 ID=MsG0480021420.01.T02:cds;Parent=MsG0480021420.01.T02
Chr4 three_prime_UTR 57699552 57699865 57699552 ID=MsG0480021420.01.T02:three_prime_utr;Parent=MsG0480021420.01.T02
Gene Sequence

>MsG0480021420.01.T01

ATGAACATTATGTCCACCCACCAGTGTGGTTGGCCTCTAAGAATTCAGGATCATCCTGACAAAGGAAGTATTAATAAGGCTCAATTTTCAGGATATCATTCTCCCTCCAAAGGATTAGACTTCCTTAATGTTGCTCAACATAAATGTTGCCATACTGCCAGAAAATGTAGGCCTATTTTTTCCAGTACAGTGAGTGACAATATGGATCCCTATGATTCAGATGATAGTGACAAGAACAAATCTCAGAATAATGATGAAATCAAAGGAAAAAATGATCAGGTAAATAGTGACAGGCTCAGAGAAAGTCTCGAGAAAATAGTCGGTACAGATGATTCAAGGTTTAGTGGATTTGACCTTGCTACTCTTATCAGGAACAAATATGGGAAATCTTATGATGTCCAGTTGATTAAGAAGGAATTCATGGGAAGAAATTTCCTTGCTATGAATGTCATGTGGAAGTACATGGAGCAGAGATCATTCCCCTTGACTGAAGAAGAATATATTTTGAGGCTCGATGATGTTGCAAACTCGTTAAAATGTTGGGGAGCTGTTTCACATATTCGGAACAACCTAGCAAAGTCGAAAGAACGACCTCGGATAGGGAAGGCTGTGAGCATTTTTATAGATATGGACGAGTCTGGTGCACGTGCGAACGAGTGGATCTACAAGTAG

>MsG0480021420.01.T02

ATGTTTTATACTTTCTTTGCATTTTTTATGAAACTGAGTGCAGGACACACAATGAACATTATGTCCACCCACCAGTGTGGTTGGCCTCTAAGAATTCAGGATCATCCTGACAAAGGAAGTATTAATAAGGCTCAATTTTCAGGATATCATTCTCCCTCCAAAGGATTAGACTTCCTTAATGTTGCTCAACATAAATGTTGCCATACTGCCAGAAAATGTAGGCCTATTTTTTCCAGTACAGTGAGTGACAATATGGATCCCTATGATTCAGATGATAGTGACAAGAACAAATCTCAGAATAATGATGAAATCAAAGGAAAAAATGATCAGGTAAATAGTGACAGGCTCAGAGAAAGTCTCGAGAAAATAGTCGGTACAGATGATTCAAGGTTTAGTGGATTTGACCTTGCTACTCTTATCAGGAACAAATATGGGAAATCTTATGATGTCCAGTTGATTAAGAAGGAATTCATGGGAAGAAATTTCCTTGCTATGAATGTCATGTGGAAGTACATGGAGCAGAGATCATTCCCCTTGACTGAAGAAGAATATATTTTGAGGCTCGATGATGTTGCAAACTCGTTAAAATGTTGGGGAGCTGTTTCACATATTCGGAACAACCTAGCAAAGTCGAAAGAACGACCTCGGATAGGGAAGGCTGTGAGCATTTTTATAGATATGGACGAGTCTGGTGCACGTGCGAACGAGTGGATCTACAAGTAG

Protein sequence

>MsG0480021420.01.T01

MNIMSTHQCGWPLRIQDHPDKGSINKAQFSGYHSPSKGLDFLNVAQHKCCHTARKCRPIFSSTVSDNMDPYDSDDSDKNKSQNNDEIKGKNDQVNSDRLRESLEKIVGTDDSRFSGFDLATLIRNKYGKSYDVQLIKKEFMGRNFLAMNVMWKYMEQRSFPLTEEEYILRLDDVANSLKCWGAVSHIRNNLAKSKERPRIGKAVSIFIDMDESGARANEWIYK*

>MsG0480021420.01.T02

MFYTFFAFFMKLSAGHTMNIMSTHQCGWPLRIQDHPDKGSINKAQFSGYHSPSKGLDFLNVAQHKCCHTARKCRPIFSSTVSDNMDPYDSDDSDKNKSQNNDEIKGKNDQVNSDRLRESLEKIVGTDDSRFSGFDLATLIRNKYGKSYDVQLIKKEFMGRNFLAMNVMWKYMEQRSFPLTEEEYILRLDDVANSLKCWGAVSHIRNNLAKSKERPRIGKAVSIFIDMDESGARANEWIYK*