AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010998.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010998.01.T01 MTR_2g096330 96.260 508 17 2 1 507 1 507 0.0 1002
MsG0280010998.01.T01 MTR_2g009270 65.640 422 142 3 88 507 102 522 0.0 571
MsG0280010998.01.T01 MTR_4g094130 66.584 404 133 2 102 504 110 512 0.0 566
MsG0280010998.01.T01 MTR_4g094130 67.792 385 122 2 121 504 1 384 0.0 548
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010998.01.T01 AT5G59750 69.006 513 140 7 1 506 2 502 0.0 704
MsG0280010998.01.T01 AT5G59750 64.717 547 140 8 1 506 2 536 0.0 687
MsG0280010998.01.T01 AT5G59750 66.376 458 135 7 1 451 2 447 0.0 595
MsG0280010998.01.T01 AT5G64300 66.827 416 136 2 90 504 112 526 0.0 581
MsG0280010998.01.T01 AT2G22450 58.163 392 154 4 92 482 92 474 5.75e-157 455

Find 120 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTTGTTGGTCTAAA+AGG 0.157959 2:-78135962 MsG0280010998.01.T01:CDS
TGTTTAACTGGGGATATATT+TGG 0.172347 2:-78136820 MsG0280010998.01.T01:CDS
TGTCACATCTTCCTACTAAA+TGG 0.198867 2:-78137082 MsG0280010998.01.T01:CDS
TTCCTTGGCGTAATGCATTA+AGG 0.202150 2:+78138216 None:intergenic
TATTGTTAGGATGCAAAATA+TGG 0.229542 2:-78137617 MsG0280010998.01.T01:intron
ACCAAAATGGGTCATATCTA+TGG 0.241057 2:-78135857 MsG0280010998.01.T01:CDS
ACCTTGATCTTGCAAATTAT+AGG 0.252533 2:+78136666 None:intergenic
GAACAACAAGGTGAGAAATT+TGG 0.257120 2:-78138447 MsG0280010998.01.T01:CDS
CCCATAGATATGACCCATTT+TGG 0.264968 2:+78135856 None:intergenic
TACTGAGGCTTCTGTAGATT+TGG 0.288351 2:-78137447 MsG0280010998.01.T01:CDS
GTCCAAGCAAACATAGATTT+GGG 0.316048 2:-78136634 MsG0280010998.01.T01:CDS
AGTCCAAGCAAACATAGATT+TGG 0.316830 2:-78136635 MsG0280010998.01.T01:CDS
GTACATTCAGAATGTTTAAC+TGG 0.320458 2:-78136832 MsG0280010998.01.T01:CDS
TTTGTTGGTCTAAAAGGATA+TGG 0.325230 2:-78135956 MsG0280010998.01.T01:CDS
ATCTATGGGTCTGATATATA+AGG 0.326183 2:-78135842 MsG0280010998.01.T01:exon
CGCTTGTTTGCTTCAGTGAT+TGG 0.328210 2:+78135899 None:intergenic
CCACCATTTCTATACTTAAG+AGG 0.347032 2:+78137491 None:intergenic
ATAAAATATGTACCTTGAAT+TGG 0.360216 2:+78138599 None:intergenic
TCCTTGGCGTAATGCATTAA+GGG 0.365334 2:+78138217 None:intergenic
TGATGTTGAAGATGGAAATA+TGG 0.367048 2:-78137378 MsG0280010998.01.T01:CDS
TCGGAGAAAACGAGAGAAAT+TGG 0.372980 2:-78137120 MsG0280010998.01.T01:CDS
TACTCCTTAGAGGGACAATC+TGG 0.387555 2:+78138257 None:intergenic
TTCTGTAGATTTGGTTGCAT+TGG 0.388739 2:-78137438 MsG0280010998.01.T01:CDS
GTAGATTTGGTTGCATTGGC+AGG 0.388977 2:-78137434 MsG0280010998.01.T01:CDS
GTCACATCTTCCTACTAAAT+GGG 0.389348 2:-78137081 MsG0280010998.01.T01:CDS
AAATCAGTTATTGAAACAAT+TGG 0.389681 2:+78137311 None:intergenic
ACTCATCATAGTGTAAGATT+TGG 0.392279 2:-78138476 MsG0280010998.01.T01:CDS
TCATAGCCAAATCTAGTTGC+TGG 0.393601 2:+78136776 None:intergenic
TTTCAATAACTGATTTGATA+AGG 0.394612 2:-78137304 MsG0280010998.01.T01:intron
AGAGCTGTGAGAACAGAAAA+TGG 0.400675 2:+78137404 None:intergenic
AACAATCCAGCAAAATTTGT+TGG 0.402087 2:-78135971 MsG0280010998.01.T01:CDS
TTTCCTCTTAAGTATAGAAA+TGG 0.404838 2:-78137494 MsG0280010998.01.T01:CDS
AATTCTAGCTAACCTTTCCT+TGG 0.419158 2:+78138201 None:intergenic
ATGTGTTCTTCGATGAATCT+TGG 0.421814 2:+78135794 None:intergenic
AAGTCCTCGGATTTCGACTC+TGG 0.423258 2:+78137536 None:intergenic
TGATCCAGATTGTCCCTCTA+AGG 0.424415 2:-78138261 MsG0280010998.01.T01:CDS
CTGTGGCCAGCAACTAGATT+TGG 0.426292 2:-78136782 MsG0280010998.01.T01:CDS
TGAAATAGACCCCATTTAGT+AGG 0.431751 2:+78137071 None:intergenic
GAAGGAAGAGGCATTGGGTT+AGG 0.438985 2:-78136703 MsG0280010998.01.T01:CDS
AATGGAAGAGTACTCCTTAG+AGG 0.439818 2:+78138247 None:intergenic
TTCTCACCTTGTTGTTCCAC+AGG 0.446496 2:+78138453 None:intergenic
ACCCCAAATCTATGTTTGCT+TGG 0.446947 2:+78136632 None:intergenic
GAATCCTCTTCTTCAGTGTC+AGG 0.447824 2:+78137757 None:intergenic
TGTTGAAGGGAATCTTATAA+AGG 0.455110 2:-78137896 MsG0280010998.01.T01:CDS
TTTATGATTAAACATGGATC+AGG 0.455192 2:-78137841 MsG0280010998.01.T01:CDS
AGCGTTACCTAGAAACAAAA+AGG 0.456329 2:-78135880 MsG0280010998.01.T01:CDS
GCTGTTGATGCTCGTGAGTA+TGG 0.457469 2:-78136607 MsG0280010998.01.T01:CDS
ATGAAATTGATTGAAGAAGC+TGG 0.460792 2:-78136757 MsG0280010998.01.T01:CDS
TGCATTAAGGGCATGCTCAA+TGG 0.463896 2:+78138229 None:intergenic
GATGAAAACAACAATGTTGA+AGG 0.466495 2:-78137910 MsG0280010998.01.T01:CDS
GGTCATGAAGGAAGAGGCAT+TGG 0.482864 2:-78136709 MsG0280010998.01.T01:CDS
TTGGTTGCTTAGGGAAACAT+AGG 0.482975 2:-78136880 MsG0280010998.01.T01:intron
AATCATAAATGCCACATCCT+TGG 0.486532 2:+78137855 None:intergenic
GCCTATAATTTGCAAGATCA+AGG 0.487252 2:-78136667 MsG0280010998.01.T01:CDS
CCACTGTGATAGTGAAAGTA+GGG 0.490607 2:+78137728 None:intergenic
GGAGTAATTGTGTATCTTAG+AGG 0.493061 2:-78136730 MsG0280010998.01.T01:CDS
ATAGAAATGGTGGAGTGCTT+AGG 0.494926 2:-78137481 MsG0280010998.01.T01:CDS
CCCACGTCATCACCAATTCA+AGG 0.497388 2:-78138611 MsG0280010998.01.T01:intron
TGAGTATGGCATTGGTGCCC+AGG 0.497742 2:-78136593 MsG0280010998.01.T01:intron
ACGTGGGAAATCAAAGGACT+AGG 0.503550 2:+78138627 None:intergenic
GCTCTTGTTGATGTTGAAGA+TGG 0.508607 2:-78137386 MsG0280010998.01.T01:CDS
TTGATTGAAGAAGCTGGAAG+AGG 0.514495 2:-78136751 MsG0280010998.01.T01:CDS
TGGAACTTCCACGGGTGTAT+CGG 0.515831 2:-78137597 MsG0280010998.01.T01:CDS
CCTCTTAAGTATAGAAATGG+TGG 0.517951 2:-78137491 MsG0280010998.01.T01:CDS
AAATTTGATATCCCTGCCTA+TGG 0.519545 2:-78138664 MsG0280010998.01.T01:exon
GGTGGAGTGCTTAGGAGAGC+TGG 0.520674 2:-78137473 MsG0280010998.01.T01:CDS
TGTTATAGTTCAAAGTTGGA+TGG 0.520999 2:-78137041 MsG0280010998.01.T01:CDS
GCTTAGGGAAACATAGGAGA+TGG 0.523904 2:-78136874 MsG0280010998.01.T01:intron
ATATTGTTATAGTTCAAAGT+TGG 0.524855 2:-78137045 MsG0280010998.01.T01:CDS
GGGAATGAAGCAGAGTCCAT+AGG 0.530818 2:+78138648 None:intergenic
GGATATGGTTTAGCTGTGAC+AGG 0.532359 2:-78135941 MsG0280010998.01.T01:CDS
GCAAAATATGGAACTTCCAC+GGG 0.535098 2:-78137605 MsG0280010998.01.T01:CDS
ACATTGGAGTTCGAACTATG+AGG 0.535750 2:-78136003 MsG0280010998.01.T01:CDS
GTCACCTGACACTGAAGAAG+AGG 0.544346 2:-78137761 MsG0280010998.01.T01:CDS
CCAAAATGGGTCATATCTAT+GGG 0.544969 2:-78135856 MsG0280010998.01.T01:CDS
TATTTATTCAAAGCTTGCAT+CGG 0.545583 2:-78138508 MsG0280010998.01.T01:intron
GGATCAGGAATAGTTTCTGT+TGG 0.545719 2:-78137826 MsG0280010998.01.T01:CDS
ATGAAGCAGAGTCCATAGGC+AGG 0.546682 2:+78138652 None:intergenic
TCAGTGATTGGTGTTAGCAC+AGG 0.547814 2:+78135911 None:intergenic
TGAGCATGTGGCTGTTGTAA+AGG 0.560783 2:-78137015 MsG0280010998.01.T01:intron
CTTAGAGGTCATGAAGGAAG+AGG 0.564446 2:-78136715 MsG0280010998.01.T01:CDS
CGTGGGAAATCAAAGGACTA+GGG 0.566760 2:+78138628 None:intergenic
TCTTGTTAGTACCAAGGATG+TGG 0.568018 2:-78137866 MsG0280010998.01.T01:CDS
TGCAAAATATGGAACTTCCA+CGG 0.569828 2:-78137606 MsG0280010998.01.T01:CDS
TAATGCATTACGCCAAGGAA+AGG 0.571418 2:-78138213 MsG0280010998.01.T01:intron
TTCTGTTGGCATGAAAGAAG+AGG 0.576477 2:-78137812 MsG0280010998.01.T01:CDS
GCCACTGTGATAGTGAAAGT+AGG 0.578231 2:+78137727 None:intergenic
TTCCACGGGTGTATCGGCTG+CGG 0.588754 2:-78137591 MsG0280010998.01.T01:CDS
ATGGAAGAGTACTCCTTAGA+GGG 0.590392 2:+78138248 None:intergenic
GTCATGAAGGAAGAGGCATT+GGG 0.591268 2:-78136708 MsG0280010998.01.T01:CDS
TTCTTTGTAAGTGAAGCTGA+AGG 0.595370 2:-78138284 MsG0280010998.01.T01:CDS
ATGAAAACAACAATGTTGAA+GGG 0.595372 2:-78137909 MsG0280010998.01.T01:CDS
TCAGTGTCAGGTGACATAAG+AGG 0.596959 2:+78137769 None:intergenic
TACATTCAGAATGTTTAACT+GGG 0.597083 2:-78136831 MsG0280010998.01.T01:CDS
CTTAGGGAAACATAGGAGAT+GGG 0.597548 2:-78136873 MsG0280010998.01.T01:intron
GCCCTTAATGCATTACGCCA+AGG 0.607779 2:-78138218 MsG0280010998.01.T01:CDS
GATGCTCGTGAGTATGGCAT+TGG 0.608440 2:-78136601 MsG0280010998.01.T01:CDS
GTGTATCTTAGAGGTCATGA+AGG 0.608731 2:-78136721 MsG0280010998.01.T01:CDS
GGGATATATTTGGATCAGCT+CGG 0.611108 2:-78136810 MsG0280010998.01.T01:CDS
GTGGCATTTATGATTAAACA+TGG 0.613664 2:-78137847 MsG0280010998.01.T01:CDS
TCCGAGGACTTAAGAAAACC+AGG 0.619694 2:-78137524 MsG0280010998.01.T01:CDS
ATCCGCAGCCGATACACCCG+TGG 0.629180 2:+78137589 None:intergenic
ATTTGGCCTGTGGAACAACA+AGG 0.634139 2:-78138459 MsG0280010998.01.T01:CDS
ATAGTGTAAGATTTGGCCTG+TGG 0.635119 2:-78138469 MsG0280010998.01.T01:CDS
TCACATCTTCCTACTAAATG+GGG 0.639715 2:-78137080 MsG0280010998.01.T01:CDS
AGCATCTCTTGTTAGTACCA+AGG 0.640073 2:-78137872 MsG0280010998.01.T01:CDS
GAAGACGTGTTTGATGATAG+TGG 0.645204 2:-78138389 MsG0280010998.01.T01:CDS
TGAAGCAGAGTCCATAGGCA+GGG 0.649337 2:+78138653 None:intergenic
GTGATGACGTGGGAAATCAA+AGG 0.652787 2:+78138621 None:intergenic
ACCTTGAATTGGTGATGACG+TGG 0.653143 2:+78138610 None:intergenic
GGATCAGCTCGGTGTGACTG+TGG 0.657027 2:-78136799 MsG0280010998.01.T01:CDS
TCCAAGCAAACATAGATTTG+GGG 0.659816 2:-78136633 MsG0280010998.01.T01:CDS
CACTGTGATAGTGAAAGTAG+GGG 0.669060 2:+78137729 None:intergenic
TGTCAGGTGACATAAGAGGA+AGG 0.670240 2:+78137773 None:intergenic
ATCTCCAGAGTCGAAATCCG+AGG 0.671355 2:-78137540 MsG0280010998.01.T01:CDS
TAGGAGAGCTGGTCATACTG+AGG 0.694929 2:-78137462 MsG0280010998.01.T01:CDS
ACATTCAGAATGTTTAACTG+GGG 0.696460 2:-78136830 MsG0280010998.01.T01:CDS
GTTGGATGGAACTGAGCATG+TGG 0.707210 2:-78137027 MsG0280010998.01.T01:CDS
CCTTGAATTGGTGATGACGT+GGG 0.735027 2:+78138611 None:intergenic
GCTGTGAGAACAGAAAATGG+TGG 0.741200 2:+78137407 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAAAAAAATATTGATAT+AGG + Chr2:78136386-78136405 None:intergenic 10.0%
!!! ACTTTTAAAATAATATTCAA+AGG - Chr2:78138601-78138620 MsG0280010998.01.T01:intron 10.0%
!!! GTTTTTGTTTTTTTAAAATT+CGG + Chr2:78137884-78137903 None:intergenic 10.0%
!! TCTGAATTATAATTTCTTAT+TGG - Chr2:78137436-78137455 MsG0280010998.01.T01:CDS 15.0%
!! TTGTGTAATATATTATTGTT+AGG - Chr2:78136705-78136724 MsG0280010998.01.T01:CDS 15.0%
!! AAATCAGTTATTGAAACAAT+TGG + Chr2:78137027-78137046 None:intergenic 20.0%
!! ATAAAATATGTACCTTGAAT+TGG + Chr2:78135739-78135758 None:intergenic 20.0%
!! ATATTGTTATAGTTCAAAGT+TGG - Chr2:78137290-78137309 MsG0280010998.01.T01:intron 20.0%
!! ATCTACTAATCAACATTTAT+TGG + Chr2:78138061-78138080 None:intergenic 20.0%
!! GAAATATTGCAAATTATACA+AGG + Chr2:78138238-78138257 None:intergenic 20.0%
!! GATTTGAAGAAAAATGAAAA+TGG - Chr2:78135970-78135989 MsG0280010998.01.T01:CDS 20.0%
!!! AATGCTAAGTTTTTTAAACT+GGG + Chr2:78136991-78137010 None:intergenic 20.0%
!!! GATGACATTTTATTAAGTAA+TGG - Chr2:78136337-78136356 MsG0280010998.01.T01:intron 20.0%
!!! TGTAAAACATTTTTGAATGT+TGG - Chr2:78138164-78138183 MsG0280010998.01.T01:intron 20.0%
!!! TTTCAATAACTGATTTGATA+AGG - Chr2:78137031-78137050 MsG0280010998.01.T01:CDS 20.0%
! ATGAAAACAACAATGTTGAA+GGG - Chr2:78136426-78136445 MsG0280010998.01.T01:intron 25.0%
! CAGTTTAAAAAACTTAGCAT+TGG - Chr2:78136990-78137009 MsG0280010998.01.T01:intron 25.0%
! GATTTGTATTCACTAATACT+AGG + Chr2:78138211-78138230 None:intergenic 25.0%
! TAATGATCAACTAAAGTAGA+TGG - Chr2:78137816-78137835 MsG0280010998.01.T01:CDS 25.0%
! TACATTCAGAATGTTTAACT+GGG - Chr2:78137504-78137523 MsG0280010998.01.T01:CDS 25.0%
! TACTAATCAACATTTATTGG+TGG + Chr2:78138058-78138077 None:intergenic 25.0%
! TATATGCAACAATCTACATT+AGG + Chr2:78136662-78136681 None:intergenic 25.0%
! TATTGTTAGGATGCAAAATA+TGG - Chr2:78136718-78136737 MsG0280010998.01.T01:CDS 25.0%
! TATTTATTCAAAGCTTGCAT+CGG - Chr2:78135827-78135846 MsG0280010998.01.T01:exon 25.0%
! TTTATGATTAAACATGGATC+AGG - Chr2:78136494-78136513 MsG0280010998.01.T01:intron 25.0%
! TTTCCTCTTAAGTATAGAAA+TGG - Chr2:78136841-78136860 MsG0280010998.01.T01:CDS 25.0%
!! AATTTCTTATTGGTTGCTTA+GGG - Chr2:78137446-78137465 MsG0280010998.01.T01:CDS 25.0%
!! TAATTTCTTATTGGTTGCTT+AGG - Chr2:78137445-78137464 MsG0280010998.01.T01:CDS 25.0%
!!! AATTTGGCTTTTTATGCTAT+TGG - Chr2:78135904-78135923 MsG0280010998.01.T01:CDS 25.0%
!!! ATTTGGCTTTTTATGCTATT+GGG - Chr2:78135905-78135924 MsG0280010998.01.T01:CDS 25.0%
!!! CAACTTATAATAGCTTGTTT+TGG + Chr2:78138284-78138303 None:intergenic 25.0%
!!! CAATGCTAAGTTTTTTAAAC+TGG + Chr2:78136992-78137011 None:intergenic 25.0%
!!! TACTATTCTTTAGTTTGCTT+AGG + Chr2:78137412-78137431 None:intergenic 25.0%
AACAATCCAGCAAAATTTGT+TGG - Chr2:78138364-78138383 MsG0280010998.01.T01:CDS 30.0%
ACATTCAGAATGTTTAACTG+GGG - Chr2:78137505-78137524 MsG0280010998.01.T01:CDS 30.0%
ACCTTGATCTTGCAAATTAT+AGG + Chr2:78137672-78137691 None:intergenic 30.0%
ACTAAAGTAGATGGTATGAT+TGG - Chr2:78137825-78137844 MsG0280010998.01.T01:CDS 30.0%
ACTCATCATAGTGTAAGATT+TGG - Chr2:78135859-78135878 MsG0280010998.01.T01:CDS 30.0%
AGAAACAAAAAGGACCAAAA+TGG - Chr2:78138465-78138484 MsG0280010998.01.T01:CDS 30.0%
AGTGATTAAAAGATCTAACC+TGG + Chr2:78137763-78137782 None:intergenic 30.0%
ATCTATGGGTCTGATATATA+AGG - Chr2:78138493-78138512 MsG0280010998.01.T01:CDS 30.0%
ATGAAATTGATTGAAGAAGC+TGG - Chr2:78137578-78137597 MsG0280010998.01.T01:CDS 30.0%
GAAACAAAAAGGACCAAAAT+GGG - Chr2:78138466-78138485 MsG0280010998.01.T01:CDS 30.0%
GATGAAAACAACAATGTTGA+AGG - Chr2:78136425-78136444 MsG0280010998.01.T01:intron 30.0%
GTACATTCAGAATGTTTAAC+TGG - Chr2:78137503-78137522 MsG0280010998.01.T01:CDS 30.0%
GTGATTAAAAGATCTAACCT+GGG + Chr2:78137762-78137781 None:intergenic 30.0%
GTGGCATTTATGATTAAACA+TGG - Chr2:78136488-78136507 MsG0280010998.01.T01:intron 30.0%
TGAACAATACTTATGCACTT+CGG - Chr2:78138136-78138155 MsG0280010998.01.T01:intron 30.0%
TGATGTTGAAGATGGAAATA+TGG - Chr2:78136957-78136976 MsG0280010998.01.T01:intron 30.0%
TGTTATAGTTCAAAGTTGGA+TGG - Chr2:78137294-78137313 MsG0280010998.01.T01:intron 30.0%
TGTTGAAGGGAATCTTATAA+AGG - Chr2:78136439-78136458 MsG0280010998.01.T01:intron 30.0%
TGTTTAACTGGGGATATATT+TGG - Chr2:78137515-78137534 MsG0280010998.01.T01:CDS 30.0%
! GATAAATGTGCAGATTTTGA+GGG - Chr2:78138309-78138328 MsG0280010998.01.T01:CDS 30.0%
! GTGCATAAGTATTGTTCAAT+TGG + Chr2:78138134-78138153 None:intergenic 30.0%
! TGATAAATGTGCAGATTTTG+AGG - Chr2:78138308-78138327 MsG0280010998.01.T01:CDS 30.0%
! TTATGCTATTGGGTTTTCTA+AGG - Chr2:78135915-78135934 MsG0280010998.01.T01:CDS 30.0%
! TTTAGACCAACAAATTTTGC+TGG + Chr2:78138373-78138392 None:intergenic 30.0%
! TTTGTTGGTCTAAAAGGATA+TGG - Chr2:78138379-78138398 MsG0280010998.01.T01:CDS 30.0%
!! GCAAAATTTGTTGGTCTAAA+AGG - Chr2:78138373-78138392 MsG0280010998.01.T01:CDS 30.0%
!! TTTTGGTCCTTTTTGTTTCT+AGG + Chr2:78138465-78138484 None:intergenic 30.0%
AAATTTGATATCCCTGCCTA+TGG - Chr2:78135671-78135690 MsG0280010998.01.T01:three_prime_UTR 35.0%
AACACGAGTTCAACAAATAG+AGG + Chr2:78135795-78135814 None:intergenic 35.0%
AATCATAAATGCCACATCCT+TGG + Chr2:78136483-78136502 None:intergenic 35.0%
ACCAAAATGGGTCATATCTA+TGG - Chr2:78138478-78138497 MsG0280010998.01.T01:CDS 35.0%
AGATGGTATGATTGGACTTT+CGG - Chr2:78137833-78137852 MsG0280010998.01.T01:CDS 35.0%
AGCGTTACCTAGAAACAAAA+AGG - Chr2:78138455-78138474 MsG0280010998.01.T01:CDS 35.0%
AGTCCAAGCAAACATAGATT+TGG - Chr2:78137700-78137719 MsG0280010998.01.T01:intron 35.0%
ATGTGTTCTTCGATGAATCT+TGG + Chr2:78138544-78138563 None:intergenic 35.0%
CCAAAATGGGTCATATCTAT+GGG - Chr2:78138479-78138498 MsG0280010998.01.T01:CDS 35.0%
CCACCATTTCTATACTTAAG+AGG + Chr2:78136847-78136866 None:intergenic 35.0%
CCTCTTAAGTATAGAAATGG+TGG - Chr2:78136844-78136863 MsG0280010998.01.T01:CDS 35.0%
CGTTACGTCTAATACATGTT+TGG - Chr2:78136168-78136187 MsG0280010998.01.T01:intron 35.0%
GAACAACAAGGTGAGAAATT+TGG - Chr2:78135888-78135907 MsG0280010998.01.T01:CDS 35.0%
GGAGTAATTGTGTATCTTAG+AGG - Chr2:78137605-78137624 MsG0280010998.01.T01:CDS 35.0%
GTCACATCTTCCTACTAAAT+GGG - Chr2:78137254-78137273 MsG0280010998.01.T01:intron 35.0%
GTCCAAGCAAACATAGATTT+GGG - Chr2:78137701-78137720 MsG0280010998.01.T01:intron 35.0%
TCACATCTTCCTACTAAATG+GGG - Chr2:78137255-78137274 MsG0280010998.01.T01:intron 35.0%
TCCAAGCAAACATAGATTTG+GGG - Chr2:78137702-78137721 MsG0280010998.01.T01:intron 35.0%
TGAAATAGACCCCATTTAGT+AGG + Chr2:78137267-78137286 None:intergenic 35.0%
TGCAAAATATGGAACTTCCA+CGG - Chr2:78136729-78136748 MsG0280010998.01.T01:CDS 35.0%
TGTCACATCTTCCTACTAAA+TGG - Chr2:78137253-78137272 MsG0280010998.01.T01:intron 35.0%
TTAAGAGGAAAAACATGACC+TGG + Chr2:78136832-78136851 None:intergenic 35.0%
TTAATGTATGTGACGCTTCA+AGG - Chr2:78137190-78137209 MsG0280010998.01.T01:intron 35.0%
TTCTTTGTAAGTGAAGCTGA+AGG - Chr2:78136051-78136070 MsG0280010998.01.T01:intron 35.0%
! AATTCTAGCTAACCTTTCCT+TGG + Chr2:78136137-78136156 None:intergenic 35.0%
! GCCTATAATTTGCAAGATCA+AGG - Chr2:78137668-78137687 MsG0280010998.01.T01:intron 35.0%
! TTCTGTAGATTTGGTTGCAT+TGG - Chr2:78136897-78136916 MsG0280010998.01.T01:intron 35.0%
!! AGCGTCTAACGTTTTTAAGA+GGG + Chr2:78135998-78136017 None:intergenic 35.0%
!! TAGCGTCTAACGTTTTTAAG+AGG + Chr2:78135999-78136018 None:intergenic 35.0%
ACATTGGAGTTCGAACTATG+AGG - Chr2:78138332-78138351 MsG0280010998.01.T01:CDS 40.0%
ACCCCAAATCTATGTTTGCT+TGG + Chr2:78137706-78137725 None:intergenic 40.0%
AGAGCTGTGAGAACAGAAAA+TGG + Chr2:78136934-78136953 None:intergenic 40.0%
AGCATCTCTTGTTAGTACCA+AGG - Chr2:78136463-78136482 MsG0280010998.01.T01:intron 40.0%
ATAGTGTAAGATTTGGCCTG+TGG - Chr2:78135866-78135885 MsG0280010998.01.T01:CDS 40.0%
CTTAGGGAAACATAGGAGAT+GGG - Chr2:78137462-78137481 MsG0280010998.01.T01:CDS 40.0%
GCAAAATATGGAACTTCCAC+GGG - Chr2:78136730-78136749 MsG0280010998.01.T01:CDS 40.0%
GCTCTTGTTGATGTTGAAGA+TGG - Chr2:78136949-78136968 MsG0280010998.01.T01:intron 40.0%
GGATCAGGAATAGTTTCTGT+TGG - Chr2:78136509-78136528 MsG0280010998.01.T01:intron 40.0%
GGGATATATTTGGATCAGCT+CGG - Chr2:78137525-78137544 MsG0280010998.01.T01:CDS 40.0%
GTGTATCTTAGAGGTCATGA+AGG - Chr2:78137614-78137633 MsG0280010998.01.T01:intron 40.0%
TAATGCATTACGCCAAGGAA+AGG - Chr2:78136122-78136141 MsG0280010998.01.T01:intron 40.0%
TACTGAGGCTTCTGTAGATT+TGG - Chr2:78136888-78136907 MsG0280010998.01.T01:intron 40.0%
TATGTGACGCTTCAAGGTAT+CGG - Chr2:78137196-78137215 MsG0280010998.01.T01:intron 40.0%
TCATAGCCAAATCTAGTTGC+TGG + Chr2:78137562-78137581 None:intergenic 40.0%
TCCTTGGCGTAATGCATTAA+GGG + Chr2:78136121-78136140 None:intergenic 40.0%
TCGGAGAAAACGAGAGAAAT+TGG - Chr2:78137215-78137234 MsG0280010998.01.T01:intron 40.0%
TCTTGTTAGTACCAAGGATG+TGG - Chr2:78136469-78136488 MsG0280010998.01.T01:intron 40.0%
TTCCTTGGCGTAATGCATTA+AGG + Chr2:78136122-78136141 None:intergenic 40.0%
TTCTGTTGGCATGAAAGAAG+AGG - Chr2:78136523-78136542 MsG0280010998.01.T01:intron 40.0%
TTGATTGAAGAAGCTGGAAG+AGG - Chr2:78137584-78137603 MsG0280010998.01.T01:CDS 40.0%
TTGGTTGCTTAGGGAAACAT+AGG - Chr2:78137455-78137474 MsG0280010998.01.T01:CDS 40.0%
! ATAGAAATGGTGGAGTGCTT+AGG - Chr2:78136854-78136873 MsG0280010998.01.T01:CDS 40.0%
! CACTGTGATAGTGAAAGTAG+GGG + Chr2:78136609-78136628 None:intergenic 40.0%
! CCACTGTGATAGTGAAAGTA+GGG + Chr2:78136610-78136629 None:intergenic 40.0%
! CCCATAGATATGACCCATTT+TGG + Chr2:78138482-78138501 None:intergenic 40.0%
! GAAGACGTGTTTGATGATAG+TGG - Chr2:78135946-78135965 MsG0280010998.01.T01:CDS 40.0%
!! AATGGAAGAGTACTCCTTAG+AGG + Chr2:78136091-78136110 None:intergenic 40.0%
!! ACATTTATTGGTGGCGAGTT+TGG + Chr2:78138049-78138068 None:intergenic 40.0%
!! ACCTGGTTTTCTTAAGTCCT+CGG + Chr2:78136815-78136834 None:intergenic 40.0%
!! ATGGAAGAGTACTCCTTAGA+GGG + Chr2:78136090-78136109 None:intergenic 40.0%
!!! GCTATTGGGTTTTCTAAGGT+TGG - Chr2:78135919-78135938 MsG0280010998.01.T01:CDS 40.0%
ACGTGGGAAATCAAAGGACT+AGG + Chr2:78135711-78135730 None:intergenic 45.0%
ATTTGGCCTGTGGAACAACA+AGG - Chr2:78135876-78135895 MsG0280010998.01.T01:CDS 45.0%
CCCTACTTTCACTATCACAG+TGG - Chr2:78136607-78136626 MsG0280010998.01.T01:CDS 45.0%
CGCTTGTTTGCTTCAGTGAT+TGG + Chr2:78138439-78138458 None:intergenic 45.0%
CGTGGGAAATCAAAGGACTA+GGG + Chr2:78135710-78135729 None:intergenic 45.0%
CTTAGAGGTCATGAAGGAAG+AGG - Chr2:78137620-78137639 MsG0280010998.01.T01:intron 45.0%
GAATCCTCTTCTTCAGTGTC+AGG + Chr2:78136581-78136600 None:intergenic 45.0%
GCTGTGAGAACAGAAAATGG+TGG + Chr2:78136931-78136950 None:intergenic 45.0%
GCTTAGGGAAACATAGGAGA+TGG - Chr2:78137461-78137480 MsG0280010998.01.T01:CDS 45.0%
GGATATGGTTTAGCTGTGAC+AGG - Chr2:78138394-78138413 MsG0280010998.01.T01:CDS 45.0%
TACTCCTTAGAGGGACAATC+TGG + Chr2:78136081-78136100 None:intergenic 45.0%
TCAGTGTCAGGTGACATAAG+AGG + Chr2:78136569-78136588 None:intergenic 45.0%
TCCGAGGACTTAAGAAAACC+AGG - Chr2:78136811-78136830 MsG0280010998.01.T01:CDS 45.0%
TGAGCATGTGGCTGTTGTAA+AGG - Chr2:78137320-78137339 MsG0280010998.01.T01:CDS 45.0%
TGATCCAGATTGTCCCTCTA+AGG - Chr2:78136074-78136093 MsG0280010998.01.T01:intron 45.0%
TGTCAGGTGACATAAGAGGA+AGG + Chr2:78136565-78136584 None:intergenic 45.0%
! GCCACTGTGATAGTGAAAGT+AGG + Chr2:78136611-78136630 None:intergenic 45.0%
! GTAGATTTGGTTGCATTGGC+AGG - Chr2:78136901-78136920 MsG0280010998.01.T01:intron 45.0%
! GTGATGACGTGGGAAATCAA+AGG + Chr2:78135717-78135736 None:intergenic 45.0%
! TGCATTAAGGGCATGCTCAA+TGG + Chr2:78136109-78136128 None:intergenic 45.0%
!! ACCTTGAATTGGTGATGACG+TGG + Chr2:78135728-78135747 None:intergenic 45.0%
!! CCTTGAATTGGTGATGACGT+GGG + Chr2:78135727-78135746 None:intergenic 45.0%
!! GTCATGAAGGAAGAGGCATT+GGG - Chr2:78137627-78137646 MsG0280010998.01.T01:intron 45.0%
!! GTGCAGATTTTGAGGGACAT+TGG - Chr2:78138316-78138335 MsG0280010998.01.T01:CDS 45.0%
!! TCAGTGATTGGTGTTAGCAC+AGG + Chr2:78138427-78138446 None:intergenic 45.0%
!! TTCTCACCTTGTTGTTCCAC+AGG + Chr2:78135885-78135904 None:intergenic 45.0%
AAGTCCTCGGATTTCGACTC+TGG + Chr2:78136802-78136821 None:intergenic 50.0%
ATCTCCAGAGTCGAAATCCG+AGG - Chr2:78136795-78136814 MsG0280010998.01.T01:CDS 50.0%
ATGAAGCAGAGTCCATAGGC+AGG + Chr2:78135686-78135705 None:intergenic 50.0%
CCCACGTCATCACCAATTCA+AGG - Chr2:78135724-78135743 MsG0280010998.01.T01:three_prime_UTR 50.0%
CTGTGGCCAGCAACTAGATT+TGG - Chr2:78137553-78137572 MsG0280010998.01.T01:CDS 50.0%
GATGCTCGTGAGTATGGCAT+TGG - Chr2:78137734-78137753 MsG0280010998.01.T01:CDS 50.0%
GCCCTTAATGCATTACGCCA+AGG - Chr2:78136117-78136136 MsG0280010998.01.T01:intron 50.0%
GCTGTTGATGCTCGTGAGTA+TGG - Chr2:78137728-78137747 MsG0280010998.01.T01:intron 50.0%
GGGAATGAAGCAGAGTCCAT+AGG + Chr2:78135690-78135709 None:intergenic 50.0%
GTCACCTGACACTGAAGAAG+AGG - Chr2:78136574-78136593 MsG0280010998.01.T01:intron 50.0%
GTTGGATGGAACTGAGCATG+TGG - Chr2:78137308-78137327 MsG0280010998.01.T01:CDS 50.0%
TAGGAGAGCTGGTCATACTG+AGG - Chr2:78136873-78136892 MsG0280010998.01.T01:intron 50.0%
TGAAGCAGAGTCCATAGGCA+GGG + Chr2:78135685-78135704 None:intergenic 50.0%
TGGAACTTCCACGGGTGTAT+CGG - Chr2:78136738-78136757 MsG0280010998.01.T01:CDS 50.0%
! GGTCATGAAGGAAGAGGCAT+TGG - Chr2:78137626-78137645 MsG0280010998.01.T01:intron 50.0%
!! GAAGGAAGAGGCATTGGGTT+AGG - Chr2:78137632-78137651 MsG0280010998.01.T01:intron 50.0%
!! TGAGTATGGCATTGGTGCCC+AGG - Chr2:78137742-78137761 MsG0280010998.01.T01:CDS 55.0%
! GGTGGAGTGCTTAGGAGAGC+TGG - Chr2:78136862-78136881 MsG0280010998.01.T01:CDS 60.0%
!! GGATCAGCTCGGTGTGACTG+TGG - Chr2:78137536-78137555 MsG0280010998.01.T01:CDS 60.0%
!! TTCCACGGGTGTATCGGCTG+CGG - Chr2:78136744-78136763 MsG0280010998.01.T01:CDS 60.0%
ATCCGCAGCCGATACACCCG+TGG + Chr2:78136749-78136768 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 78135663 78138694 78135663 ID=MsG0280010998.01;Name=MsG0280010998.01
Chr2 mRNA 78135663 78138694 78135663 ID=MsG0280010998.01.T01;Parent=MsG0280010998.01;Name=MsG0280010998.01.T01;_AED=0.49;_eAED=0.49;_QI=27|0.83|0.85|1|1|1|7|181|507
Chr2 exon 78135663 78136035 78135663 ID=MsG0280010998.01.T01:exon:12047;Parent=MsG0280010998.01.T01
Chr2 exon 78136594 78136890 78136594 ID=MsG0280010998.01.T01:exon:12046;Parent=MsG0280010998.01.T01
Chr2 exon 78137016 78137145 78137016 ID=MsG0280010998.01.T01:exon:12045;Parent=MsG0280010998.01.T01
Chr2 exon 78137305 78137630 78137305 ID=MsG0280010998.01.T01:exon:12044;Parent=MsG0280010998.01.T01
Chr2 exon 78137732 78137950 78137732 ID=MsG0280010998.01.T01:exon:12043;Parent=MsG0280010998.01.T01
Chr2 exon 78138214 78138517 78138214 ID=MsG0280010998.01.T01:exon:12042;Parent=MsG0280010998.01.T01
Chr2 exon 78138612 78138694 78138612 ID=MsG0280010998.01.T01:exon:12041;Parent=MsG0280010998.01.T01
Chr2 five_prime_UTR 78138668 78138694 78138668 ID=MsG0280010998.01.T01:five_prime_utr;Parent=MsG0280010998.01.T01
Chr2 CDS 78138612 78138667 78138612 ID=MsG0280010998.01.T01:cds;Parent=MsG0280010998.01.T01
Chr2 CDS 78138214 78138517 78138214 ID=MsG0280010998.01.T01:cds;Parent=MsG0280010998.01.T01
Chr2 CDS 78137732 78137950 78137732 ID=MsG0280010998.01.T01:cds;Parent=MsG0280010998.01.T01
Chr2 CDS 78137305 78137630 78137305 ID=MsG0280010998.01.T01:cds;Parent=MsG0280010998.01.T01
Chr2 CDS 78137016 78137145 78137016 ID=MsG0280010998.01.T01:cds;Parent=MsG0280010998.01.T01
Chr2 CDS 78136594 78136890 78136594 ID=MsG0280010998.01.T01:cds;Parent=MsG0280010998.01.T01
Chr2 CDS 78135844 78136035 78135844 ID=MsG0280010998.01.T01:cds;Parent=MsG0280010998.01.T01
Chr2 three_prime_UTR 78135663 78135843 78135663 ID=MsG0280010998.01.T01:three_prime_utr;Parent=MsG0280010998.01.T01
Gene Sequence

>MsG0280010998.01.T01

ATGGACTCTGCTTCATTCCCTAGTCCTTTGATTTCCCACGTCATCACCAATTCAAGCTTGCATCGGTCATGCACTACTCATCATAGTGTAAGATTTGGCCTGTGGAACAACAAGGTGAGAAATTTGGCTTTTTATGCTATTGGGTTTTCTAAGGTTGGAACTGAAGACGTGTTTGATGATAGTGGTGATTTGAAGAAAAATGAAAATGGATCCCTCTTAAAAACGTTAGACGCTACAAATGAAATAACTGATCAAGAAAATAGCGATTTCTTTGTAAGTGAAGCTGAAGGTGATCCAGATTGTCCCTCTAAGGAGTACTCTTCCATTGAGCATGCCCTTAATGCATTACGCCAAGGAAAGTTTGTAATCGTTGTAGATGATGAAAACAACAATGTTGAAGGGAATCTTATAAAGGCAGCATCTCTTGTTAGTACCAAGGATGTGGCATTTATGATTAAACATGGATCAGGAATAGTTTCTGTTGGCATGAAAGAAGAGGATCTTCAAAGATTAAACCTTCCTCTTATGTCACCTGACACTGAAGAAGAGGATTCATCTGCCCCTACTTTCACTATCACAGATGCAAAATATGGAACTTCCACGGGTGTATCGGCTGCGGATAGAGCAAAAACAATTCTTGCTTTATCATCTCCAGAGTCGAAATCCGAGGACTTAAGAAAACCAGGTCATGTTTTTCCTCTTAAGTATAGAAATGGTGGAGTGCTTAGGAGAGCTGGTCATACTGAGGCTTCTGTAGATTTGGTTGCATTGGCAGGCTTGCCACCATTTTCTGTTCTCACAGCTCTTGTTGATGTTGAAGATGGAAATATGGCATCTTTGCCCAGTTTAAAAAACTTAGCATTGGAATATAACTTACCAATTGTTTCAATAACTGATTTGATAAGGTATCGGAGAAAACGAGAGAAATTGGTTGAAAGAACTTATGTGTCACATCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATAGTTCAAAGTTGGATGGAACTGAGCATGTGGCTGTTGTAAAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTAAGAGTACATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCCAGCAACTAGATTTGGCTATGAAATTGATTGAAGAAGCTGGAAGAGGAGTAATTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGGTTAGGTCACAAACTTCAAGCCTATAATTTGCAAGATCAAGGTCGTGATACAGTCCAAGCAAACATAGATTTGGGGTTAGCTGTTGATGCTCGTGAGTATGGCATTGGTGCCCAGATTTTGAGGGACATTGGAGTTCGAACTATGAGGTTGATGACAAACAATCCAGCAAAATTTGTTGGTCTAAAAGGATATGGTTTAGCTGTGACAGGTCGTGTTCCTGTGCTAACACCAATCACTGAAGCAAACAAGCGTTACCTAGAAACAAAAAGGACCAAAATGGGTCATATCTATGGGTCTGATATATAA

Protein sequence

>MsG0280010998.01.T01

MDSASFPSPLISHVITNSSLHRSCTTHHSVRFGLWNNKVRNLAFYAIGFSKVGTEDVFDDSGDLKKNENGSLLKTLDATNEITDQENSDFFVSEAEGDPDCPSKEYSSIEHALNALRQGKFVIVVDDENNNVEGNLIKAASLVSTKDVAFMIKHGSGIVSVGMKEEDLQRLNLPLMSPDTEEEDSSAPTFTITDAKYGTSTGVSAADRAKTILALSSPESKSEDLRKPGHVFPLKYRNGGVLRRAGHTEASVDLVALAGLPPFSVLTALVDVEDGNMASLPSLKNLALEYNLPIVSITDLIRYRRKREKLVERTYVSHLPTKWGLFQAYCYSSKLDGTEHVAVVKGNIGDGQDVLVRVHSECLTGDIFGSARCDCGQQLDLAMKLIEEAGRGVIVYLRGHEGRGIGLGHKLQAYNLQDQGRDTVQANIDLGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVTGRVPVLTPITEANKRYLETKRTKMGHIYGSDI*