AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014933.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014933.01.T01 MTR_3g466110 97.297 481 13 0 1 481 1 481 0.0 943
MsG0380014933.01.T01 MTR_3g466040 84.884 516 77 1 1 515 1 516 0.0 847
MsG0380014933.01.T01 MTR_5g026350 36.945 563 298 12 1 511 1 558 1.01e-109 338
MsG0380014933.01.T01 MTR_7g083660 35.856 555 307 10 1 511 1 550 2.36e-104 324
MsG0380014933.01.T01 MTR_8g071920 37.833 563 297 13 1 513 42 601 1.08e-101 318
MsG0380014933.01.T01 MTR_4g073690 31.629 528 337 8 3 511 11 533 3.31e-79 258
MsG0380014933.01.T01 MTR_5g022380 30.502 518 340 7 7 512 13 522 3.02e-62 213
MsG0380014933.01.T01 MTR_2g450710 29.174 545 340 11 8 511 13 552 1.07e-58 204
MsG0380014933.01.T01 MTR_4g073690 32.648 389 242 6 3 376 11 394 2.99e-58 198
MsG0380014933.01.T01 MTR_4g116210 28.832 548 345 14 8 511 12 558 2.85e-55 195
MsG0380014933.01.T01 MTR_7g029015 26.678 566 352 9 7 512 15 577 2.77e-43 162
MsG0380014933.01.T01 MTR_1g059080 27.869 549 338 9 5 511 22 554 1.13e-42 160
MsG0380014933.01.T01 MTR_7g102880 26.471 544 361 8 5 511 27 568 3.84e-39 150
MsG0380014933.01.T01 MTR_1g050550 26.619 556 345 10 5 511 22 563 4.94e-38 147
MsG0380014933.01.T01 MTR_1g111550 26.987 541 352 11 5 511 23 554 1.40e-37 146
MsG0380014933.01.T01 MTR_3g099150 23.519 557 360 8 7 513 15 555 4.29e-35 139
MsG0380014933.01.T01 MTR_5g090570 26.577 523 360 9 7 513 11 525 2.58e-34 136
MsG0380014933.01.T01 MTR_1g111510 26.160 539 360 11 5 511 24 556 1.10e-33 135
MsG0380014933.01.T01 MTR_2g100400 24.176 546 361 12 1 511 1 528 1.53e-33 134
MsG0380014933.01.T01 MTR_1g111540 25.830 542 358 11 5 511 24 556 8.97e-33 132
MsG0380014933.01.T01 MTR_1g111530 25.651 538 364 11 5 511 20 552 2.80e-32 130
MsG0380014933.01.T01 MTR_5g022380 27.536 414 280 7 111 512 7 412 3.17e-30 122
MsG0380014933.01.T01 MTR_2g104250 28.033 239 140 5 276 511 79 288 7.31e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014933.01.T01 AT2G30300 50.095 525 225 8 1 514 1 499 2.23e-155 452
MsG0380014933.01.T01 AT5G45275 38.475 564 289 14 1 513 1 557 4.34e-112 344
MsG0380014933.01.T01 AT4G19450 39.292 565 281 14 1 511 1 557 2.78e-110 339
MsG0380014933.01.T01 AT1G31470 38.636 528 293 11 7 511 43 562 4.52e-102 318
MsG0380014933.01.T01 AT3G01630 36.245 538 293 12 7 511 23 543 5.01e-95 299
MsG0380014933.01.T01 AT3G01630 36.245 538 293 12 7 511 41 561 8.20e-95 299
MsG0380014933.01.T01 AT4G19450 38.995 418 203 11 1 373 1 411 5.96e-78 251
MsG0380014933.01.T01 AT4G34950 30.129 541 342 10 6 513 15 552 1.74e-71 238
MsG0380014933.01.T01 AT2G16660 31.169 539 328 9 2 513 9 531 1.21e-68 230
MsG0380014933.01.T01 AT1G80530 30.258 542 340 11 2 511 8 543 7.00e-64 218
MsG0380014933.01.T01 AT2G16660 31.658 398 233 8 2 376 9 390 5.83e-46 166
MsG0380014933.01.T01 AT5G50520 27.154 534 341 11 7 511 16 530 6.78e-45 166
MsG0380014933.01.T01 AT5G50630 27.154 534 341 11 7 511 16 530 6.78e-45 166
MsG0380014933.01.T01 AT2G28120 26.128 532 364 6 7 511 17 546 2.17e-43 162
MsG0380014933.01.T01 AT2G39210 26.534 554 356 11 1 511 10 555 5.66e-43 161
MsG0380014933.01.T01 AT5G14120 25.627 558 363 10 7 513 16 572 2.57e-41 156
MsG0380014933.01.T01 AT3G01930 25.177 564 363 10 7 513 16 577 3.08e-39 150
MsG0380014933.01.T01 AT1G74780 26.829 533 345 12 7 511 7 522 1.40e-38 148
MsG0380014933.01.T01 AT2G34355 25.094 534 348 11 7 513 7 515 9.27e-37 143
MsG0380014933.01.T01 AT1G18940 24.673 535 349 11 7 513 9 517 7.62e-35 137
MsG0380014933.01.T01 AT2G34350 23.660 541 359 10 1 512 1 516 1.77e-33 133
MsG0380014933.01.T01 AT2G34350 23.660 541 359 10 1 512 1 516 1.77e-33 133
MsG0380014933.01.T01 AT3G01930 25.185 405 256 8 7 366 16 418 1.48e-24 106
MsG0380014933.01.T01 AT2G34355 24.422 389 248 10 145 513 3 365 1.26e-20 94.0
MsG0380014933.01.T01 AT3G01930 23.707 464 295 10 107 513 3 464 2.23e-19 91.3

Find 95 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTATTTACCTTCCTTTA+TGG 0.063933 3:+62692471 MsG0380014933.01.T01:CDS
TCCTTAATCTTCACAGAAAT+TGG 0.113544 3:-62693022 None:intergenic
ATTTGTGTTTGTTCCATTTA+TGG 0.143254 3:-62692333 None:intergenic
AATGTCTCAGCTTTCTTATT+TGG 0.170915 3:-62692761 None:intergenic
TGTTGAGAAGAATAAATTTC+TGG 0.186844 3:+62693209 MsG0380014933.01.T01:CDS
TTTGGTATTTCTTAACAATT+TGG 0.191912 3:+62693270 MsG0380014933.01.T01:CDS
GTGTCTTTGTCTTCTGCTTT+TGG 0.192683 3:+62693337 MsG0380014933.01.T01:CDS
TCCTCACTTGGTGTGCTTAT+TGG 0.193854 3:+62692965 MsG0380014933.01.T01:CDS
TTGTTGTCTTGGAACTTTAT+TGG 0.202596 3:+62694459 MsG0380014933.01.T01:CDS
CCCAATTTCTGTGAAGATTA+AGG 0.220888 3:+62693021 MsG0380014933.01.T01:CDS
CTTATCATCGGTTCGTTTCT+CGG 0.231656 3:+62692500 MsG0380014933.01.T01:CDS
AATATGACATAGAAGAAATT+TGG 0.235115 3:-62692562 None:intergenic
TACACAAGCACTGCAGTAAT+TGG 0.245797 3:+62694211 MsG0380014933.01.T01:CDS
TCCACAACAACTGAGCTATT+TGG 0.249847 3:+62694268 MsG0380014933.01.T01:CDS
CTGTTCTGCTACTTCATCTT+TGG 0.259954 3:+62693315 MsG0380014933.01.T01:CDS
AAACAAACACTAGAATGTTT+AGG 0.266198 3:-62692863 None:intergenic
ATTGGTGTTATGGAAGAAAT+TGG 0.266375 3:+62693175 MsG0380014933.01.T01:CDS
AACAAACACTAGAATGTTTA+GGG 0.279536 3:-62692862 None:intergenic
ACGTCTCATTCCATCTCTTT+TGG 0.289040 3:+62693369 MsG0380014933.01.T01:CDS
TTCTTATTAACTTTCCTTGC+TGG 0.290781 3:+62692593 MsG0380014933.01.T01:CDS
ATTTGGCTCCAAGCCATAAA+TGG 0.293960 3:+62692320 MsG0380014933.01.T01:CDS
TAAGCCTAGTTGGCATCATT+TGG 0.330549 3:+62692303 MsG0380014933.01.T01:CDS
AAATTTCTTCTATGTCATAT+TGG 0.331796 3:+62692564 MsG0380014933.01.T01:CDS
AATTCAAGAGATTGGTGTTA+TGG 0.341430 3:+62693165 MsG0380014933.01.T01:CDS
TTTCTCGGACTAATCGGTTA+TGG 0.348039 3:+62692515 MsG0380014933.01.T01:CDS
TTGCTGGGAATAGCATTTGT+TGG 0.369362 3:+62692609 MsG0380014933.01.T01:CDS
TTGGTATTTCTTAACAATTT+GGG 0.377031 3:+62693271 MsG0380014933.01.T01:CDS
AGAAATAAAAGCAACAATAT+TGG 0.377396 3:-62692738 None:intergenic
TACTGCAGTGCTTGTGTAAA+GGG 0.379851 3:-62694206 None:intergenic
TCTTATTAACTTTCCTTGCT+GGG 0.386250 3:+62692594 MsG0380014933.01.T01:CDS
TTTGTTATTACAATTGCAAC+TGG 0.387762 3:+62692896 MsG0380014933.01.T01:CDS
GGTTCGTTTCTCGGACTAAT+CGG 0.394038 3:+62692509 MsG0380014933.01.T01:CDS
CCTTAATCTTCACAGAAATT+GGG 0.415851 3:-62693021 None:intergenic
ATTGAGCTCCACTTGTGAAA+TGG 0.421525 3:-62692393 None:intergenic
AGTTGTGAAATTCAAGAGAT+TGG 0.423500 3:+62693157 MsG0380014933.01.T01:CDS
TATTCTCCTCCATGGTGAAA+TGG 0.428451 3:-62693090 None:intergenic
GCAGTAATTGGAGTTTCTAC+TGG 0.428724 3:+62694223 MsG0380014933.01.T01:CDS
TGGAAAGAAGTTGTTTGAGC+TGG 0.431341 3:-62692373 None:intergenic
AGCTGAGTAACCAAACAAAA+AGG 0.441737 3:-62694347 None:intergenic
CATAGAGAATGAAGTAAAAG+AGG 0.445172 3:+62693126 MsG0380014933.01.T01:CDS
TGTTTGTTCCATTTATGGCT+TGG 0.449184 3:-62692328 None:intergenic
ACTATTATACCAACTACAAC+TGG 0.450801 3:-62692806 None:intergenic
TAAAGTTCCAAGACAACAAA+AGG 0.451891 3:-62694455 None:intergenic
ATGATAAGGACGAGCCATAA+AGG 0.458991 3:-62692485 None:intergenic
GGATTAACAACTAGTTATCA+AGG 0.460309 3:+62692695 MsG0380014933.01.T01:CDS
CTTCAATGGCTAAGCCTAGT+TGG 0.461205 3:+62692293 MsG0380014933.01.T01:CDS
TGTCTTCTTCTACTCTTCAA+TGG 0.465890 3:+62692279 MsG0380014933.01.T01:CDS
AAGAAGAATGCAAATGTTGT+TGG 0.467873 3:-62694160 None:intergenic
TTCGATCGGCAAGTTGCCGT+TGG 0.472775 3:+62692674 MsG0380014933.01.T01:CDS
GGAAAGAAGTTGTTTGAGCT+GGG 0.475761 3:-62692372 None:intergenic
TGCCACTATAGTAGCAGTTA+TGG 0.477489 3:+62694135 MsG0380014933.01.T01:CDS
TTCACTATTATTCTCCTCCA+TGG 0.479663 3:-62693098 None:intergenic
TTATGGCTCGTCCTTATCAT+CGG 0.483897 3:+62692488 MsG0380014933.01.T01:CDS
CGAGAAACGAACCGATGATA+AGG 0.498548 3:-62692499 None:intergenic
TTAAGGAACTCTTAGAATCA+TGG 0.502848 3:+62693038 MsG0380014933.01.T01:CDS
GCACTTATTTACCGTGGTGA+AGG 0.504829 3:+62694370 MsG0380014933.01.T01:CDS
TTACTGCAGTGCTTGTGTAA+AGG 0.505172 3:-62694207 None:intergenic
TCTCTTATACCAGTTGTAGT+TGG 0.512589 3:+62692797 MsG0380014933.01.T01:CDS
ACAGAAATTGGGAGTAAAAG+AGG 0.514863 3:-62693010 None:intergenic
GCCAAATAGCTCAGTTGTTG+TGG 0.519172 3:-62694269 None:intergenic
CGTGGTGAAGGGAATGAACA+TGG 0.521353 3:+62694382 MsG0380014933.01.T01:CDS
TACGAAACTTTATATTCGAT+CGG 0.522301 3:+62692660 MsG0380014933.01.T01:CDS
CACTTATTTACCGTGGTGAA+GGG 0.524996 3:+62694371 MsG0380014933.01.T01:CDS
TGACATAGAAGAAATTTGGT+TGG 0.527278 3:-62692558 None:intergenic
TTGAGCTGGGAAGAGTAAGC+AGG 0.528252 3:-62692359 None:intergenic
ATAGAGAATGAAGTAAAAGA+GGG 0.528255 3:+62693127 MsG0380014933.01.T01:CDS
GGAGCCAAATGATGCCAACT+AGG 0.537028 3:-62692307 None:intergenic
TGTAAATCATAATGTAGTTG+TGG 0.538384 3:+62694306 MsG0380014933.01.T01:CDS
ACTTCTTTCCATTTCACAAG+TGG 0.541328 3:+62692385 MsG0380014933.01.T01:CDS
TGCCATAACTGCTACTATAG+TGG 0.544260 3:-62694137 None:intergenic
GTTGTGGCAAATATTCCAAT+GGG 0.544685 3:+62694322 MsG0380014933.01.T01:CDS
ACCAATAAGCACACCAAGTG+AGG 0.550160 3:-62692966 None:intergenic
TAGAAGTAGTCCAAAAGAGA+TGG 0.550728 3:-62693379 None:intergenic
ATCGAATATAAAGTTTCGTA+TGG 0.555333 3:-62692657 None:intergenic
ATAACTAGTTGTTAATCCAA+CGG 0.572986 3:-62692690 None:intergenic
AGTTGTGGCAAATATTCCAA+TGG 0.576400 3:+62694321 MsG0380014933.01.T01:CDS
ATAACTGCTACTATAGTGGC+AGG 0.578194 3:-62694133 None:intergenic
GAATGAACATGGGAAATGCA+TGG 0.579212 3:+62694393 MsG0380014933.01.T01:CDS
ACTTTAATTTCTCTTACTAG+AGG 0.582711 3:-62692833 None:intergenic
AATGAACATGGGAAATGCAT+GGG 0.586706 3:+62694394 MsG0380014933.01.T01:CDS
ACAAACAAAATATCCTCACT+TGG 0.588126 3:+62692953 MsG0380014933.01.T01:CDS
CAGTGCTTGTGTAAAGGGCA+AGG 0.600030 3:-62694201 None:intergenic
AACAAATGCTATTCCCAGCA+AGG 0.604864 3:-62692607 None:intergenic
ACATGGGAAATGCATGGGCA+TGG 0.611694 3:+62694399 MsG0380014933.01.T01:CDS
TGAGCTGGGAAGAGTAAGCA+GGG 0.624570 3:-62692358 None:intergenic
TAAGGACGAGCCATAAAGGA+AGG 0.629213 3:-62692481 None:intergenic
GGACAAATAGCTGAATCAAG+AGG 0.632165 3:+62693292 MsG0380014933.01.T01:CDS
AGTTGTTGTGGAAATAGCAG+TGG 0.639364 3:-62694257 None:intergenic
CAGCATCGGATGCAAAAGCA+AGG 0.662018 3:-62692418 None:intergenic
CATGTTCATTCCCTTCACCA+CGG 0.670222 3:-62694381 None:intergenic
AAGGAAGGTAAATAGCAGCA+AGG 0.673778 3:-62692466 None:intergenic
TCAGCTGCACTTATTTACCG+TGG 0.674454 3:+62694364 MsG0380014933.01.T01:CDS
GTGGTGAAGGGAATGAACAT+GGG 0.684893 3:+62694383 MsG0380014933.01.T01:CDS
AATCTACCATTTCACCATGG+AGG 0.703159 3:+62693084 MsG0380014933.01.T01:CDS
AAGAATCTACCATTTCACCA+TGG 0.716797 3:+62693081 MsG0380014933.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATCTTGAAAATAT+AGG - Chr3:62693794-62693813 None:intergenic 10.0%
!!! AATAATAATTTTAATTTCAG+GGG + Chr3:62694091-62694110 MsG0380014933.01.T01:intron 10.0%
!!! TTCAAGATAATTTTTATTTA+AGG + Chr3:62693799-62693818 MsG0380014933.01.T01:intron 10.0%
!! AAATTGTAAAAATTTAGTGT+CGG - Chr3:62693603-62693622 None:intergenic 15.0%
!! AATATAAATAAAGAATCATG+TGG - Chr3:62693440-62693459 None:intergenic 15.0%
!!! TATTTCTTTGTGTATTTTTT+TGG + Chr3:62693235-62693254 MsG0380014933.01.T01:CDS 15.0%
!! AAATTTCTTCTATGTCATAT+TGG + Chr3:62692564-62692583 MsG0380014933.01.T01:CDS 20.0%
!! AATATGACATAGAAGAAATT+TGG - Chr3:62692565-62692584 None:intergenic 20.0%
!! AGAAATAAAAGCAACAATAT+TGG - Chr3:62692741-62692760 None:intergenic 20.0%
!! ATTTAATGCAATAATGACAA+TGG + Chr3:62693911-62693930 MsG0380014933.01.T01:intron 20.0%
!! CAAAATATTGACACTATATA+CGG - Chr3:62693640-62693659 None:intergenic 20.0%
!! TTGGTATTTCTTAACAATTT+GGG + Chr3:62693271-62693290 MsG0380014933.01.T01:CDS 20.0%
!! TTTGGTATTTCTTAACAATT+TGG + Chr3:62693270-62693289 MsG0380014933.01.T01:CDS 20.0%
!!! AATATCACTGCTTTTTTTAA+AGG + Chr3:62693666-62693685 MsG0380014933.01.T01:intron 20.0%
!!! GTTATGCTACATTTTAAAAA+GGG - Chr3:62693861-62693880 None:intergenic 20.0%
!!! TGTTATGCTACATTTTAAAA+AGG - Chr3:62693862-62693881 None:intergenic 20.0%
! AAACAAACACTAGAATGTTT+AGG - Chr3:62692866-62692885 None:intergenic 25.0%
! AACAAACACTAGAATGTTTA+GGG - Chr3:62692865-62692884 None:intergenic 25.0%
! ACTCTAATGCAACTAATTTA+TGG + Chr3:62693487-62693506 MsG0380014933.01.T01:intron 25.0%
! ATAACTAGTTGTTAATCCAA+CGG - Chr3:62692693-62692712 None:intergenic 25.0%
! ATAGAGAATGAAGTAAAAGA+GGG + Chr3:62693127-62693146 MsG0380014933.01.T01:CDS 25.0%
! ATCGAATATAAAGTTTCGTA+TGG - Chr3:62692660-62692679 None:intergenic 25.0%
! ATTTGTGTTTGTTCCATTTA+TGG - Chr3:62692336-62692355 None:intergenic 25.0%
! GCTAGTAACATTGAAAATAT+AGG - Chr3:62694046-62694065 None:intergenic 25.0%
! GGTTATTAAGCAACAAAATT+AGG + Chr3:62693717-62693736 MsG0380014933.01.T01:intron 25.0%
! TACGAAACTTTATATTCGAT+CGG + Chr3:62692660-62692679 MsG0380014933.01.T01:CDS 25.0%
! TGTAAATCATAATGTAGTTG+TGG + Chr3:62694306-62694325 MsG0380014933.01.T01:CDS 25.0%
! TGTTGAGAAGAATAAATTTC+TGG + Chr3:62693209-62693228 MsG0380014933.01.T01:CDS 25.0%
!! ACTTTAATTTCTCTTACTAG+AGG - Chr3:62692836-62692855 None:intergenic 25.0%
!! ATAGCAACACTTTTATCATT+TGG + Chr3:62694428-62694447 MsG0380014933.01.T01:CDS 25.0%
!! GAAAATTTTCGTTGCAATTT+AGG - Chr3:62693545-62693564 None:intergenic 25.0%
!! TAGCAACACTTTTATCATTT+GGG + Chr3:62694429-62694448 MsG0380014933.01.T01:CDS 25.0%
!!! ATAAATGCCATGATTTTAGT+TGG - Chr3:62693885-62693904 None:intergenic 25.0%
!!! GAAGAGGCTTTTAATTTTTT+TGG - Chr3:62693974-62693993 None:intergenic 25.0%
!!! TATTTTTTTGGTGCAACTAT+TGG + Chr3:62693247-62693266 MsG0380014933.01.T01:CDS 25.0%
!!! TGGCTTTGATTCTATATTTT+AGG + Chr3:62694479-62694498 MsG0380014933.01.T01:CDS 25.0%
!!! TTTGTTATTACAATTGCAAC+TGG + Chr3:62692896-62692915 MsG0380014933.01.T01:CDS 25.0%
AAGAAGAATGCAAATGTTGT+TGG - Chr3:62694163-62694182 None:intergenic 30.0%
AATGTCTCAGCTTTCTTATT+TGG - Chr3:62692764-62692783 None:intergenic 30.0%
ACAAACAAAATATCCTCACT+TGG + Chr3:62692953-62692972 MsG0380014933.01.T01:CDS 30.0%
ACTATTATACCAACTACAAC+TGG - Chr3:62692809-62692828 None:intergenic 30.0%
AGTTGTGAAATTCAAGAGAT+TGG + Chr3:62693157-62693176 MsG0380014933.01.T01:CDS 30.0%
CATAACACCAACTAAAATCA+TGG + Chr3:62693875-62693894 MsG0380014933.01.T01:intron 30.0%
CATAGAGAATGAAGTAAAAG+AGG + Chr3:62693126-62693145 MsG0380014933.01.T01:CDS 30.0%
CCTTAATCTTCACAGAAATT+GGG - Chr3:62693024-62693043 None:intergenic 30.0%
GACTACTTCTATAGGTAATA+TGG + Chr3:62693391-62693410 MsG0380014933.01.T01:intron 30.0%
GGATTAACAACTAGTTATCA+AGG + Chr3:62692695-62692714 MsG0380014933.01.T01:CDS 30.0%
TAAAGTTCCAAGACAACAAA+AGG - Chr3:62694458-62694477 None:intergenic 30.0%
TCCTTAATCTTCACAGAAAT+TGG - Chr3:62693025-62693044 None:intergenic 30.0%
TCTTATTAACTTTCCTTGCT+GGG + Chr3:62692594-62692613 MsG0380014933.01.T01:CDS 30.0%
TGACATAGAAGAAATTTGGT+TGG - Chr3:62692561-62692580 None:intergenic 30.0%
TTAAGGAACTCTTAGAATCA+TGG + Chr3:62693038-62693057 MsG0380014933.01.T01:CDS 30.0%
TTCTTATTAACTTTCCTTGC+TGG + Chr3:62692593-62692612 MsG0380014933.01.T01:CDS 30.0%
TTGTTGTCTTGGAACTTTAT+TGG + Chr3:62694459-62694478 MsG0380014933.01.T01:CDS 30.0%
TTTAAAAAGGGTCTCACTAA+CGG - Chr3:62693849-62693868 None:intergenic 30.0%
! AATAATGACAATGGTGATGT+TGG + Chr3:62693920-62693939 MsG0380014933.01.T01:intron 30.0%
! AGCAACACTTTTATCATTTG+GGG + Chr3:62694430-62694449 MsG0380014933.01.T01:CDS 30.0%
! GTTTTACGCACATAAACAAT+AGG + Chr3:62694510-62694529 MsG0380014933.01.T01:CDS 30.0%
!! AATTCAAGAGATTGGTGTTA+TGG + Chr3:62693165-62693184 MsG0380014933.01.T01:CDS 30.0%
!! ATTGGTGTTATGGAAGAAAT+TGG + Chr3:62693175-62693194 MsG0380014933.01.T01:CDS 30.0%
!! TCTTCTGCTTTTGGATTTTT+TGG + Chr3:62693346-62693365 MsG0380014933.01.T01:CDS 30.0%
!!! AAACTTTTTGGTTGGTTTTC+TGG + Chr3:62692443-62692462 MsG0380014933.01.T01:CDS 30.0%
AAGAATCTACCATTTCACCA+TGG + Chr3:62693081-62693100 MsG0380014933.01.T01:CDS 35.0%
AATGAACATGGGAAATGCAT+GGG + Chr3:62694394-62694413 MsG0380014933.01.T01:CDS 35.0%
ACAGAAATTGGGAGTAAAAG+AGG - Chr3:62693013-62693032 None:intergenic 35.0%
ACTTCTTTCCATTTCACAAG+TGG + Chr3:62692385-62692404 MsG0380014933.01.T01:CDS 35.0%
AGCTGAGTAACCAAACAAAA+AGG - Chr3:62694350-62694369 None:intergenic 35.0%
AGTTGTGGCAAATATTCCAA+TGG + Chr3:62694321-62694340 MsG0380014933.01.T01:CDS 35.0%
ATTCCTTAACTAGTGCTTCT+GGG + Chr3:62693822-62693841 MsG0380014933.01.T01:intron 35.0%
CATGGCACAAAAAAAGAGAA+AGG + Chr3:62693056-62693075 MsG0380014933.01.T01:CDS 35.0%
CCCAATTTCTGTGAAGATTA+AGG + Chr3:62693021-62693040 MsG0380014933.01.T01:CDS 35.0%
GTTGTGGCAAATATTCCAAT+GGG + Chr3:62694322-62694341 MsG0380014933.01.T01:CDS 35.0%
TAGAAGTAGTCCAAAAGAGA+TGG - Chr3:62693382-62693401 None:intergenic 35.0%
TCTCTTATACCAGTTGTAGT+TGG + Chr3:62692797-62692816 MsG0380014933.01.T01:CDS 35.0%
TGTCTTCTTCTACTCTTCAA+TGG + Chr3:62692279-62692298 MsG0380014933.01.T01:CDS 35.0%
TGTTTGTTCCATTTATGGCT+TGG - Chr3:62692331-62692350 None:intergenic 35.0%
TTCACTATTATTCTCCTCCA+TGG - Chr3:62693101-62693120 None:intergenic 35.0%
! CTCTTTTGGACTACTTCTAT+AGG + Chr3:62693383-62693402 MsG0380014933.01.T01:CDS 35.0%
! CTGCTATTTACCTTCCTTTA+TGG + Chr3:62692471-62692490 MsG0380014933.01.T01:CDS 35.0%
!! TTTTGGTGCAACTATTGGTT+TGG + Chr3:62693252-62693271 MsG0380014933.01.T01:CDS 35.0%
AACAAATGCTATTCCCAGCA+AGG - Chr3:62692610-62692629 None:intergenic 40.0%
AAGGAAGGTAAATAGCAGCA+AGG - Chr3:62692469-62692488 None:intergenic 40.0%
AATCTACCATTTCACCATGG+AGG + Chr3:62693084-62693103 MsG0380014933.01.T01:CDS 40.0%
ACCAAAAAGTTTGCCAGCAT+CGG - Chr3:62692435-62692454 None:intergenic 40.0%
AGCCAAGTCAATAAGAGAAG+AGG - Chr3:62693990-62694009 None:intergenic 40.0%
AGTTGTTGTGGAAATAGCAG+TGG - Chr3:62694260-62694279 None:intergenic 40.0%
ATAACTGCTACTATAGTGGC+AGG - Chr3:62694136-62694155 None:intergenic 40.0%
ATGATAAGGACGAGCCATAA+AGG - Chr3:62692488-62692507 None:intergenic 40.0%
ATTGAGCTCCACTTGTGAAA+TGG - Chr3:62692396-62692415 None:intergenic 40.0%
CAATTTAGGCAGCAACTTCA+AGG - Chr3:62693531-62693550 None:intergenic 40.0%
CACTTATTTACCGTGGTGAA+GGG + Chr3:62694371-62694390 MsG0380014933.01.T01:CDS 40.0%
CCAAACAAAAAGGATCCCAT+TGG - Chr3:62694340-62694359 None:intergenic 40.0%
GAATGAACATGGGAAATGCA+TGG + Chr3:62694393-62694412 MsG0380014933.01.T01:CDS 40.0%
GATTCCTTAACTAGTGCTTC+TGG + Chr3:62693821-62693840 MsG0380014933.01.T01:intron 40.0%
GCAGTAATTGGAGTTTCTAC+TGG + Chr3:62694223-62694242 MsG0380014933.01.T01:CDS 40.0%
GGAAAGAAGTTGTTTGAGCT+GGG - Chr3:62692375-62692394 None:intergenic 40.0%
GGACAAATAGCTGAATCAAG+AGG + Chr3:62693292-62693311 MsG0380014933.01.T01:CDS 40.0%
TAAGCCTAGTTGGCATCATT+TGG + Chr3:62692303-62692322 MsG0380014933.01.T01:CDS 40.0%
TACTGCAGTGCTTGTGTAAA+GGG - Chr3:62694209-62694228 None:intergenic 40.0%
TATTCTCCTCCATGGTGAAA+TGG - Chr3:62693093-62693112 None:intergenic 40.0%
TCCACAACAACTGAGCTATT+TGG + Chr3:62694268-62694287 MsG0380014933.01.T01:CDS 40.0%
TGCCACTATAGTAGCAGTTA+TGG + Chr3:62694135-62694154 MsG0380014933.01.T01:CDS 40.0%
TGCCATAACTGCTACTATAG+TGG - Chr3:62694140-62694159 None:intergenic 40.0%
TGGAAAGAAGTTGTTTGAGC+TGG - Chr3:62692376-62692395 None:intergenic 40.0%
TTACTGCAGTGCTTGTGTAA+AGG - Chr3:62694210-62694229 None:intergenic 40.0%
TTATGGCTCGTCCTTATCAT+CGG + Chr3:62692488-62692507 MsG0380014933.01.T01:CDS 40.0%
TTGCTGGGAATAGCATTTGT+TGG + Chr3:62692609-62692628 MsG0380014933.01.T01:CDS 40.0%
TTTCTCGGACTAATCGGTTA+TGG + Chr3:62692515-62692534 MsG0380014933.01.T01:CDS 40.0%
! ACGTCTCATTCCATCTCTTT+TGG + Chr3:62693369-62693388 MsG0380014933.01.T01:CDS 40.0%
! AGCCTCTTCTCTTATTGACT+TGG + Chr3:62693985-62694004 MsG0380014933.01.T01:intron 40.0%
! ATTTGGCTCCAAGCCATAAA+TGG + Chr3:62692320-62692339 MsG0380014933.01.T01:CDS 40.0%
! CCAATGGGATCCTTTTTGTT+TGG + Chr3:62694337-62694356 MsG0380014933.01.T01:CDS 40.0%
! CTGTTCTGCTACTTCATCTT+TGG + Chr3:62693315-62693334 MsG0380014933.01.T01:CDS 40.0%
! GTGTCTTTGTCTTCTGCTTT+TGG + Chr3:62693337-62693356 MsG0380014933.01.T01:CDS 40.0%
! TACACAAGCACTGCAGTAAT+TGG + Chr3:62694211-62694230 MsG0380014933.01.T01:CDS 40.0%
!! ATGCTGGCAAACTTTTTGGT+TGG + Chr3:62692435-62692454 MsG0380014933.01.T01:CDS 40.0%
!! CTTATCATCGGTTCGTTTCT+CGG + Chr3:62692500-62692519 MsG0380014933.01.T01:CDS 40.0%
ACCAATAAGCACACCAAGTG+AGG - Chr3:62692969-62692988 None:intergenic 45.0%
CATGTTCATTCCCTTCACCA+CGG - Chr3:62694384-62694403 None:intergenic 45.0%
CGAGAAACGAACCGATGATA+AGG - Chr3:62692502-62692521 None:intergenic 45.0%
CTTCAATGGCTAAGCCTAGT+TGG + Chr3:62692293-62692312 MsG0380014933.01.T01:CDS 45.0%
GAATGCTAACTAGTGCTCAG+AGG + Chr3:62693690-62693709 MsG0380014933.01.T01:intron 45.0%
GCACTTATTTACCGTGGTGA+AGG + Chr3:62694370-62694389 MsG0380014933.01.T01:CDS 45.0%
GCCAAATAGCTCAGTTGTTG+TGG - Chr3:62694272-62694291 None:intergenic 45.0%
GGTTCGTTTCTCGGACTAAT+CGG + Chr3:62692509-62692528 MsG0380014933.01.T01:CDS 45.0%
GTGGTGAAGGGAATGAACAT+GGG + Chr3:62694383-62694402 MsG0380014933.01.T01:CDS 45.0%
TAAGGACGAGCCATAAAGGA+AGG - Chr3:62692484-62692503 None:intergenic 45.0%
TCAGCTGCACTTATTTACCG+TGG + Chr3:62694364-62694383 MsG0380014933.01.T01:CDS 45.0%
! TAACTAGTGCTCAGAGGCAT+TGG + Chr3:62693696-62693715 MsG0380014933.01.T01:intron 45.0%
! TCCGATGCTGGCAAACTTTT+TGG + Chr3:62692431-62692450 MsG0380014933.01.T01:CDS 45.0%
!! TCCTCACTTGGTGTGCTTAT+TGG + Chr3:62692965-62692984 MsG0380014933.01.T01:CDS 45.0%
!! TGGGGTTCCTTTTGTTGTCT+TGG + Chr3:62694448-62694467 MsG0380014933.01.T01:CDS 45.0%
!!! TAATAATAATTTTAATTTCA+GGG + Chr3:62694090-62694109 MsG0380014933.01.T01:intron 5.0%
!!! TTAATAATAATTTTAATTTC+AGG + Chr3:62694089-62694108 MsG0380014933.01.T01:intron 5.0%
ACATGGGAAATGCATGGGCA+TGG + Chr3:62694399-62694418 MsG0380014933.01.T01:CDS 50.0%
CAGTGCTTGTGTAAAGGGCA+AGG - Chr3:62694204-62694223 None:intergenic 50.0%
CGTGGTGAAGGGAATGAACA+TGG + Chr3:62694382-62694401 MsG0380014933.01.T01:CDS 50.0%
GGAGCCAAATGATGCCAACT+AGG - Chr3:62692310-62692329 None:intergenic 50.0%
TGAGCTGGGAAGAGTAAGCA+GGG - Chr3:62692361-62692380 None:intergenic 50.0%
TTGAGCTGGGAAGAGTAAGC+AGG - Chr3:62692362-62692381 None:intergenic 50.0%
! CAGCATCGGATGCAAAAGCA+AGG - Chr3:62692421-62692440 None:intergenic 50.0%
!! CTTGCTTTTGCATCCGATGC+TGG + Chr3:62692419-62692438 MsG0380014933.01.T01:CDS 50.0%
!! GGTCCCAGAAGCACTAGTTA+AGG - Chr3:62693828-62693847 None:intergenic 50.0%
TTCGATCGGCAAGTTGCCGT+TGG + Chr3:62692674-62692693 MsG0380014933.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 62692265 62694546 62692265 ID=MsG0380014933.01;Name=MsG0380014933.01
Chr3 mRNA 62692265 62694546 62692265 ID=MsG0380014933.01.T01;Parent=MsG0380014933.01;Name=MsG0380014933.01.T01;_AED=0.22;_eAED=0.22;_QI=13|1|1|1|1|1|2|15|515
Chr3 exon 62692265 62693404 62692265 ID=MsG0380014933.01.T01:exon:29567;Parent=MsG0380014933.01.T01
Chr3 exon 62694111 62694546 62694111 ID=MsG0380014933.01.T01:exon:29568;Parent=MsG0380014933.01.T01
Chr3 five_prime_UTR 62692265 62692277 62692265 ID=MsG0380014933.01.T01:five_prime_utr;Parent=MsG0380014933.01.T01
Chr3 CDS 62692278 62693404 62692278 ID=MsG0380014933.01.T01:cds;Parent=MsG0380014933.01.T01
Chr3 CDS 62694111 62694531 62694111 ID=MsG0380014933.01.T01:cds;Parent=MsG0380014933.01.T01
Chr3 three_prime_UTR 62694532 62694546 62694532 ID=MsG0380014933.01.T01:three_prime_utr;Parent=MsG0380014933.01.T01
Gene Sequence

>MsG0380014933.01.T01

ATGTCTTCTTCTACTCTTCAATGGCTAAGCCTAGTTGGCATCATTTGGCTCCAAGCCATAAATGGAACAAACACAAATTTCCCTGCTTACTCTTCCCAGCTCAAACAACTTCTTTCCATTTCACAAGTGGAGCTCAATAACCTTGCTTTTGCATCCGATGCTGGCAAACTTTTTGGTTGGTTTTCTGGCCTTGCTGCTATTTACCTTCCTTTATGGCTCGTCCTTATCATCGGTTCGTTTCTCGGACTAATCGGTTATGGTCTACAATATCTCTTCATAACCAACCAAATTTCTTCTATGTCATATTGGCAAGTCTTCTTATTAACTTTCCTTGCTGGGAATAGCATTTGTTGGATTAACACTGTCTGTTATGTTGTCGCCATACGAAACTTTATATTCGATCGGCAAGTTGCCGTTGGATTAACAACTAGTTATCAAGGATTAAGTGCAAAGATTTATACCAATATTGTTGCTTTTATTTCTCCAAATAAGAAAGCTGAGACATTTCTTTTCTTGAACTCTCTTATACCAGTTGTAGTTGGTATAATAGTAGCTCCTCTAGTAAGAGAAATTAAAGTGAAAAACCCTAAACATTCTAGTGTTTGTTTTGCTATTTTGTTTGTTATTACAATTGCAACTGGAATTTATGCTGTGATAAGTAGTTTGCAATATTTCACAAACAAAATATCCTCACTTGGTGTGCTTATTGGTATTCTAGTTTCTCTTCTCTTACCTCTTTTACTCCCAATTTCTGTGAAGATTAAGGAACTCTTAGAATCATGGCACAAAAAAAGAGAAAGGTTAAGAATCTACCATTTCACCATGGAGGAGAATAATAGTGAAGAGAGCATAGAGAATGAAGTAAAAGAGGGTGAAGATAGTTGTGAAATTCAAGAGATTGGTGTTATGGAAGAAATTGGAGTGAAGTTAATGTTGAGAAGAATAAATTTCTGGTTATATTTCTTTGTGTATTTTTTTGGTGCAACTATTGGTTTGGTATTTCTTAACAATTTGGGACAAATAGCTGAATCAAGAGGCTGTTCTGCTACTTCATCTTTGGTGTCTTTGTCTTCTGCTTTTGGATTTTTTGGACGTCTCATTCCATCTCTTTTGGACTACTTCTATAGGGGAAAACATACAATTTCAAGACCTGCCACTATAGTAGCAGTTATGGCACCAACAACATTTGCATTCTTCTTACTTCTCAACAAAACTGACCTTGCCCTTTACACAAGCACTGCAGTAATTGGAGTTTCTACTGGAGCAATCACTTCCACTGCTATTTCCACAACAACTGAGCTATTTGGCACAAAGAATTTTTCTGTAAATCATAATGTAGTTGTGGCAAATATTCCAATGGGATCCTTTTTGTTTGGTTACTCAGCTGCACTTATTTACCGTGGTGAAGGGAATGAACATGGGAAATGCATGGGCATGGAATGTTATAGCAACACTTTTATCATTTGGGGTTCCTTTTGTTGTCTTGGAACTTTATTGGCTTTGATTCTATATTTTAGGACTCGCAAGTTTTACGCACATAAACAATAG

Protein sequence

>MsG0380014933.01.T01

MSSSTLQWLSLVGIIWLQAINGTNTNFPAYSSQLKQLLSISQVELNNLAFASDAGKLFGWFSGLAAIYLPLWLVLIIGSFLGLIGYGLQYLFITNQISSMSYWQVFLLTFLAGNSICWINTVCYVVAIRNFIFDRQVAVGLTTSYQGLSAKIYTNIVAFISPNKKAETFLFLNSLIPVVVGIIVAPLVREIKVKNPKHSSVCFAILFVITIATGIYAVISSLQYFTNKISSLGVLIGILVSLLLPLLLPISVKIKELLESWHKKRERLRIYHFTMEENNSEESIENEVKEGEDSCEIQEIGVMEEIGVKLMLRRINFWLYFFVYFFGATIGLVFLNNLGQIAESRGCSATSSLVSLSSAFGFFGRLIPSLLDYFYRGKHTISRPATIVAVMAPTTFAFFLLLNKTDLALYTSTAVIGVSTGAITSTAISTTTELFGTKNFSVNHNVVVANIPMGSFLFGYSAALIYRGEGNEHGKCMGMECYSNTFIIWGSFCCLGTLLALILYFRTRKFYAHKQ*