AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037915.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037915.01.T01 MTR_7g038720 65.877 211 2 2 146 286 309 519 7.83e-83 259
MsG0780037915.01.T01 MTR_7g038720 74.545 110 7 2 41 129 109 218 2.47e-44 158
MsG0780037915.01.T01 MTR_7g030030 65.877 211 2 2 146 286 309 519 7.83e-83 259
MsG0780037915.01.T01 MTR_7g030030 74.545 110 7 2 41 129 109 218 2.47e-44 158
MsG0780037915.01.T01 MTR_8g019500 65.403 211 3 2 146 286 308 518 1.82e-82 258
MsG0780037915.01.T01 MTR_8g019500 74.545 110 7 2 41 129 108 217 5.36e-44 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037915.01.T01 AT4G04770 59.716 211 15 2 146 286 319 529 3.86e-74 237
MsG0780037915.01.T01 AT4G04770 57.265 117 27 2 42 136 120 235 5.96e-33 127
MsG0780037915.01.T01 AT5G44316 75.862 145 23 3 146 286 306 442 2.16e-68 220
MsG0780037915.01.T01 AT5G44316 38.843 121 48 3 42 136 101 221 8.49e-15 74.7

Find 79 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATATATCTTAAAATT+TGG 0.071231 7:-36325501 None:intergenic
TAACTGATCTTCACCAATTT+TGG 0.088841 7:-36325002 None:intergenic
CAATGAGCTTCCGATGAATT+TGG 0.166578 7:+36325101 MsG0780037915.01.T01:exon
GCCATTGGTTCTTGAAATTC+TGG 0.180974 7:+36325212 MsG0780037915.01.T01:three_prime_UTR
CAGTGTGATTCCATGCTTAT+TGG 0.219953 7:+36323908 MsG0780037915.01.T01:CDS
GTTTCTGTTGATAATCCTTT+TGG 0.244130 7:-36322843 None:intergenic
GTGTTATATTTGTTCGATTT+CGG 0.274023 7:+36323193 MsG0780037915.01.T01:CDS
AAACGATTCTGTTCGTTTAA+CGG 0.286876 7:-36323093 None:intergenic
CATCATATATCTTAAAATTT+GGG 0.289759 7:-36325500 None:intergenic
GTTTGAAACTTGATGTTTCA+TGG 0.304729 7:-36325347 None:intergenic
AATTATAGAGATCTACATTA+AGG 0.313350 7:-36325369 None:intergenic
CGCGATTACGACAAGAAATT+CGG 0.317548 7:+36322789 MsG0780037915.01.T01:CDS
TAATAATTCCTAACCAAATC+TGG 0.322490 7:-36323233 None:intergenic
GCTTGTTCAGGTTCAGTCTA+AGG 0.336826 7:+36323862 MsG0780037915.01.T01:intron
TTAAGATATATGATGTTGAT+TGG 0.374781 7:+36325508 MsG0780037915.01.T01:three_prime_UTR
GAAGTATCCGAGCGTTGTTT+TGG 0.379206 7:+36323682 MsG0780037915.01.T01:CDS
TTTCTATTGCAACTACTCAT+AGG 0.386827 7:+36323151 MsG0780037915.01.T01:CDS
TTCGATTTCGGATGCTGTTA+AGG 0.387550 7:+36323205 MsG0780037915.01.T01:CDS
AGTATTCGACTGTGCAGAAT+TGG 0.387705 7:+36323538 MsG0780037915.01.T01:CDS
TGTTAAGGAGTATCCAGATT+TGG 0.388881 7:+36323220 MsG0780037915.01.T01:CDS
GAGGCTAGTACGTCCAAAAT+TGG 0.390303 7:+36324989 MsG0780037915.01.T01:CDS
TCTTGTCGTAATCGCGGTTA+CGG 0.398938 7:-36322782 None:intergenic
GTTGAGTTGTATTGTGGGGA+GGG 0.400958 7:+36323504 MsG0780037915.01.T01:CDS
TCAAGCTTCAAGCTCATGAT+TGG 0.402556 7:-36325136 None:intergenic
CTCAGAGGCGGTAGTGTGTC+TGG 0.402758 7:+36325240 MsG0780037915.01.T01:three_prime_UTR
GCCTAAAATCCGAACCTGAT+TGG 0.404412 7:+36322881 MsG0780037915.01.T01:CDS
TCGTGGACTCAGGTGGAGAC+TGG 0.409146 7:+36323644 MsG0780037915.01.T01:intron
TCGTGCTCAATTCTTTCTGA+TGG 0.420263 7:-36324968 None:intergenic
ATCATGAGCTTGAAGCTTGA+GGG 0.425447 7:+36325139 MsG0780037915.01.T01:three_prime_UTR
TATATCTTAAAATTTGGGTT+AGG 0.426054 7:-36325495 None:intergenic
GCAATGGCTGCTATGATCTC+TGG 0.432036 7:+36325061 MsG0780037915.01.T01:CDS
CGAAAATTGAGCATCCAATC+AGG 0.439256 7:-36322895 None:intergenic
AGAATGTTACATGATGTATA+TGG 0.446906 7:+36325265 MsG0780037915.01.T01:three_prime_UTR
TAACTCAGACCTTACAAAAC+CGG 0.457056 7:-36325470 None:intergenic
ACGATATGTTTATAAGTGAT+AGG 0.465794 7:+36325430 MsG0780037915.01.T01:three_prime_UTR
ATTGAGCATCCAATCAGGTT+CGG 0.471647 7:-36322890 None:intergenic
CGGTTGTTGAGTTGTATTGT+GGG 0.475492 7:+36323499 MsG0780037915.01.T01:CDS
GGCAGGCCACCTTTAAAAGC+CGG 0.479499 7:+36325451 MsG0780037915.01.T01:three_prime_UTR
AGACTGGGTCTGCAATTACT+TGG 0.489539 7:+36323660 MsG0780037915.01.T01:CDS
CGCGGTTACGGAGAATTTCA+CGG 0.497813 7:-36322770 None:intergenic
GATTCTTTCACAATTCCAAA+AGG 0.499044 7:+36322828 MsG0780037915.01.T01:CDS
GCGAAAATGAAAGAACCAAT+TGG 0.499728 7:+36322940 MsG0780037915.01.T01:CDS
TATGTTTATAAGTGATAGGC+AGG 0.500021 7:+36325434 MsG0780037915.01.T01:three_prime_UTR
TGGTATGCGGGTGATGAGAA+TGG 0.501530 7:+36323558 MsG0780037915.01.T01:CDS
TTTGAATTAGCTCAGGCCAT+TGG 0.506299 7:+36325197 MsG0780037915.01.T01:three_prime_UTR
TGTTGAGTTGTATTGTGGGG+AGG 0.511336 7:+36323503 MsG0780037915.01.T01:CDS
TCGAAGTATCTCAAAAGCTC+AGG 0.512282 7:-36323057 None:intergenic
TTGAGATACTTCGATAAGCT+CGG 0.521652 7:+36323066 MsG0780037915.01.T01:CDS
TTCTTCTAAGCTATTATCGA+GGG 0.524152 7:-36323028 None:intergenic
CGTGGACTCAGGTGGAGACT+GGG 0.524772 7:+36323645 MsG0780037915.01.T01:intron
TTGGAGGGTGATGAGAGTGT+TGG 0.535226 7:+36323701 MsG0780037915.01.T01:CDS
TCCAGAATTTCAAGAACCAA+TGG 0.543182 7:-36325213 None:intergenic
AATCATGAGCTTGAAGCTTG+AGG 0.545655 7:+36325138 MsG0780037915.01.T01:three_prime_UTR
AGGAAGACACTTGAGAAGGC+TGG 0.560350 7:+36323171 MsG0780037915.01.T01:CDS
TCACCCTCCAAAACAACGCT+CGG 0.561244 7:-36323689 None:intergenic
GCGGTTGTTGAGTTGTATTG+TGG 0.564872 7:+36323498 MsG0780037915.01.T01:CDS
TTCATGGATTCTATGCGGCA+TGG 0.569752 7:-36325331 None:intergenic
CTTCTTCTAAGCTATTATCG+AGG 0.577623 7:-36323029 None:intergenic
CACCTCGGAGCCAAATTCAT+CGG 0.584047 7:-36325111 None:intergenic
GAATACATATCCTTACATCC+AGG 0.591093 7:+36323946 MsG0780037915.01.T01:CDS
AGCTCATGATTGGTTCACCT+CGG 0.601851 7:-36325126 None:intergenic
TTGAAGCTTGAGGGGTCAGT+CGG 0.603318 7:+36325148 MsG0780037915.01.T01:three_prime_UTR
TGCGGGTGATGAGAATGGAA+AGG 0.622020 7:+36323563 MsG0780037915.01.T01:CDS
TCATGAGCTTGAAGCTTGAG+GGG 0.627191 7:+36325140 MsG0780037915.01.T01:three_prime_UTR
TTCCGATGAATTTGGCTCCG+AGG 0.627231 7:+36325109 MsG0780037915.01.T01:exon
AGCACTATCACCAATAAGCA+TGG 0.629725 7:-36323918 None:intergenic
GAAATTCTGGAATTTCTCAG+AGG 0.637560 7:+36325225 MsG0780037915.01.T01:three_prime_UTR
ATTCTGGAATTTCTCAGAGG+CGG 0.638195 7:+36325228 MsG0780037915.01.T01:three_prime_UTR
CGAATTTCTTGTCGTAATCG+CGG 0.638662 7:-36322788 None:intergenic
ACTGTGCAGAATTGGTATGC+GGG 0.639721 7:+36323546 MsG0780037915.01.T01:CDS
TTTAGGCTGAGATTAACGAA+TGG 0.652445 7:-36322865 None:intergenic
GACTGTGCAGAATTGGTATG+CGG 0.657058 7:+36323545 MsG0780037915.01.T01:CDS
TCATAGGAAGACACTTGAGA+AGG 0.657651 7:+36323167 MsG0780037915.01.T01:CDS
TGTTCAGGTTCAGTCTAAGG+CGG 0.659200 7:+36323865 MsG0780037915.01.T01:intron
GAAGCTCATTGAAGACATCA+CGG 0.661065 7:-36325089 None:intergenic
GAATCGTTTAGCGAATGTTG+CGG 0.668424 7:+36323107 MsG0780037915.01.T01:CDS
GATGTTTCATGGATTCTATG+CGG 0.686704 7:-36325336 None:intergenic
ATCAGAAAGAATTGAGCACG+AGG 0.705190 7:+36324970 MsG0780037915.01.T01:CDS
GGTTGTTGAGTTGTATTGTG+GGG 0.708201 7:+36323500 MsG0780037915.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAGCAATTAATTAT+GGG + Chr7:36324406-36324425 MsG0780037915.01.T01:intron 10.0%
!! AATAATTAATGTTTATCGAT+CGG + Chr7:36324022-36324041 MsG0780037915.01.T01:intron 15.0%
!! ACATCATATATCTTAAAATT+TGG - Chr7:36325504-36325523 None:intergenic 15.0%
!! CATCATATATCTTAAAATTT+GGG - Chr7:36325503-36325522 None:intergenic 15.0%
!! GATAAAATAGCAATTAATTA+TGG + Chr7:36324405-36324424 MsG0780037915.01.T01:intron 15.0%
!! AATTATAGAGATCTACATTA+AGG - Chr7:36325372-36325391 None:intergenic 20.0%
!! AGATAACGATAAGAATATAT+GGG + Chr7:36324051-36324070 MsG0780037915.01.T01:intron 20.0%
!! ATATCTTGAAATCTATAGTT+GGG - Chr7:36322980-36322999 None:intergenic 20.0%
!! TAGATAACGATAAGAATATA+TGG + Chr7:36324050-36324069 MsG0780037915.01.T01:intron 20.0%
!! TATATCTTGAAATCTATAGT+TGG - Chr7:36322981-36323000 None:intergenic 20.0%
!! TCTATATTAGTATTACTTCA+AGG - Chr7:36324366-36324385 None:intergenic 20.0%
!! TGTTTAATCAAGTATGAAAA+CGG - Chr7:36324760-36324779 None:intergenic 20.0%
!! TTAAGATATATGATGTTGAT+TGG + Chr7:36325508-36325527 MsG0780037915.01.T01:three_prime_UTR 20.0%
!!! AATTGATTCCTTAAAATTCA+AGG - Chr7:36324442-36324461 None:intergenic 20.0%
!!! TATATCTTAAAATTTGGGTT+AGG - Chr7:36325498-36325517 None:intergenic 20.0%
!!! TTATTTTACTTTCAACAAAG+AGG + Chr7:36325022-36325041 MsG0780037915.01.T01:CDS 20.0%
!!! TTGGATATATTTTCTAAGAT+TGG + Chr7:36324136-36324155 MsG0780037915.01.T01:intron 20.0%
! AATAGACTATGAAAAAGCAA+TGG + Chr7:36325045-36325064 MsG0780037915.01.T01:CDS 25.0%
! AATTATGTAACAATAGAGCA+TGG - Chr7:36324217-36324236 None:intergenic 25.0%
! ACGATATGTTTATAAGTGAT+AGG + Chr7:36325430-36325449 MsG0780037915.01.T01:three_prime_UTR 25.0%
! AGAATGTTACATGATGTATA+TGG + Chr7:36325265-36325284 MsG0780037915.01.T01:three_prime_UTR 25.0%
! ATAATTATCAAAGGCTGATA+CGG + Chr7:36323750-36323769 MsG0780037915.01.T01:intron 25.0%
! ATATCTTATGCACAGAATAT+CGG + Chr7:36324626-36324645 MsG0780037915.01.T01:intron 25.0%
! CCTTAAAATTCAAGGATTAT+TGG - Chr7:36324434-36324453 None:intergenic 25.0%
! CTATGATTTAAGAACTACAT+GGG + Chr7:36324597-36324616 MsG0780037915.01.T01:intron 25.0%
! CTTTGACGAATAATTATCAA+AGG + Chr7:36323741-36323760 MsG0780037915.01.T01:intron 25.0%
! GAACAAAAAAAAAAGTTACC+TGG - Chr7:36323967-36323986 None:intergenic 25.0%
! GTGTTATATTTGTTCGATTT+CGG + Chr7:36323193-36323212 MsG0780037915.01.T01:CDS 25.0%
! GTTTAATCAAGTATGAAAAC+GGG - Chr7:36324759-36324778 None:intergenic 25.0%
! TAATAATTCCTAACCAAATC+TGG - Chr7:36323236-36323255 None:intergenic 25.0%
! TTTAATCAAGTATGAAAACG+GGG - Chr7:36324758-36324777 None:intergenic 25.0%
! TTTCATCTATAACTTGAAAC+TGG - Chr7:36324342-36324361 None:intergenic 25.0%
!! AGATTTGGTTAGGAATTATT+AGG + Chr7:36323235-36323254 MsG0780037915.01.T01:intron 25.0%
!! CCAATAATCCTTGAATTTTA+AGG + Chr7:36324431-36324450 MsG0780037915.01.T01:intron 25.0%
!! GATTTGGTTAGGAATTATTA+GGG + Chr7:36323236-36323255 MsG0780037915.01.T01:intron 25.0%
!! GATTTTTATCATAAGAAGTG+CGG - Chr7:36323467-36323486 None:intergenic 25.0%
!!! TCATTATTTTGAATTAGCTC+AGG + Chr7:36325190-36325209 MsG0780037915.01.T01:three_prime_UTR 25.0%
AAAAAAGTTACCTGGATGTA+AGG - Chr7:36323959-36323978 None:intergenic 30.0%
AAACGATTCTGTTCGTTTAA+CGG - Chr7:36323096-36323115 None:intergenic 30.0%
AGAATTAATCCTGATTGTGT+TGG + Chr7:36324383-36324402 MsG0780037915.01.T01:intron 30.0%
CACTAGAAATTGTTAGTATC+TGG + Chr7:36324696-36324715 MsG0780037915.01.T01:intron 30.0%
GATTCTTTCACAATTCCAAA+AGG + Chr7:36322828-36322847 MsG0780037915.01.T01:CDS 30.0%
GCGTAATAATTATCATCACT+AGG - Chr7:36323270-36323289 None:intergenic 30.0%
GCTATGATTTAAGAACTACA+TGG + Chr7:36324596-36324615 MsG0780037915.01.T01:intron 30.0%
TAATTATCAAAGGCTGATAC+GGG + Chr7:36323751-36323770 MsG0780037915.01.T01:intron 30.0%
TATGTTTATAAGTGATAGGC+AGG + Chr7:36325434-36325453 MsG0780037915.01.T01:three_prime_UTR 30.0%
TTCTTCTAAGCTATTATCGA+GGG - Chr7:36323031-36323050 None:intergenic 30.0%
TTTCTATTGCAACTACTCAT+AGG + Chr7:36323151-36323170 MsG0780037915.01.T01:CDS 30.0%
! CTATTTTATCCAACACAATC+AGG - Chr7:36324395-36324414 None:intergenic 30.0%
! GTTTGAAACTTGATGTTTCA+TGG - Chr7:36325350-36325369 None:intergenic 30.0%
! TAACTGATCTTCACCAATTT+TGG - Chr7:36325005-36325024 None:intergenic 30.0%
! TATAATTTTGTGACGAAGAG+AGG + Chr7:36323593-36323612 MsG0780037915.01.T01:intron 30.0%
!! CTAAGATTGGTTTCTCTATA+TGG + Chr7:36324149-36324168 MsG0780037915.01.T01:intron 30.0%
!! GGGAACTTTAAAATATGTAG+CGG + Chr7:36324071-36324090 MsG0780037915.01.T01:intron 30.0%
!! TGAAATTGCAATTGTTTTGC+AGG + Chr7:36324937-36324956 MsG0780037915.01.T01:intron 30.0%
!! TGTGTCTTTTATTTGTTTCC+TGG + Chr7:36324818-36324837 MsG0780037915.01.T01:intron 30.0%
!!! GTTTCTGTTGATAATCCTTT+TGG - Chr7:36322846-36322865 None:intergenic 30.0%
AAAGAGAGTAGGATATCGAA+GGG + Chr7:36323803-36323822 MsG0780037915.01.T01:intron 35.0%
AAATACGTGGATATCTGCAT+CGG - Chr7:36323356-36323375 None:intergenic 35.0%
AAGCAAATCCAATAAGACAC+AGG - Chr7:36324255-36324274 None:intergenic 35.0%
AATTATCAAAGGCTGATACG+GGG + Chr7:36323752-36323771 MsG0780037915.01.T01:intron 35.0%
AGGAAGAATACAAAGAGAGT+AGG + Chr7:36323792-36323811 MsG0780037915.01.T01:intron 35.0%
AGGTATCAAAGACCAAATGT+TGG - Chr7:36324858-36324877 None:intergenic 35.0%
ATTATCGAGGGTTTCTTCTT+AGG - Chr7:36323019-36323038 None:intergenic 35.0%
ATTCGAGGAACTGTTATAGA+GGG + Chr7:36323840-36323859 MsG0780037915.01.T01:intron 35.0%
CACAGAATATCGGTATTCTT+CGG + Chr7:36324636-36324655 MsG0780037915.01.T01:intron 35.0%
CGCATTAATCCTAAAATACG+TGG - Chr7:36323369-36323388 None:intergenic 35.0%
CTTCTTCTAAGCTATTATCG+AGG - Chr7:36323032-36323051 None:intergenic 35.0%
GAATACATATCCTTACATCC+AGG + Chr7:36323946-36323965 MsG0780037915.01.T01:CDS 35.0%
GATGTTTCATGGATTCTATG+CGG - Chr7:36325339-36325358 None:intergenic 35.0%
GCGAAAATGAAAGAACCAAT+TGG + Chr7:36322940-36322959 MsG0780037915.01.T01:CDS 35.0%
GGGACTAAGATGATACATAA+AGG + Chr7:36323772-36323791 MsG0780037915.01.T01:intron 35.0%
GGTATCAAAGACCAAATGTT+GGG - Chr7:36324857-36324876 None:intergenic 35.0%
GTATGTGTTATCTGACCAAT+TGG - Chr7:36322958-36322977 None:intergenic 35.0%
TAAAAATCAGCTTCATGCTG+CGG + Chr7:36323479-36323498 MsG0780037915.01.T01:CDS 35.0%
TAACTCAGACCTTACAAAAC+CGG - Chr7:36325473-36325492 None:intergenic 35.0%
TCCAGAATTTCAAGAACCAA+TGG - Chr7:36325216-36325235 None:intergenic 35.0%
TTATTACGCTGCATTGAATG+CGG + Chr7:36323281-36323300 MsG0780037915.01.T01:intron 35.0%
TTGAGATACTTCGATAAGCT+CGG + Chr7:36323066-36323085 MsG0780037915.01.T01:CDS 35.0%
TTTAGGCTGAGATTAACGAA+TGG - Chr7:36322868-36322887 None:intergenic 35.0%
! ACATTTGGTCTTTGATACCT+CGG + Chr7:36324858-36324877 MsG0780037915.01.T01:intron 35.0%
! ACCAAATGTTGGGATAGTTT+TGG - Chr7:36324847-36324866 None:intergenic 35.0%
! TGCAGATATCCACGTATTTT+AGG + Chr7:36323357-36323376 MsG0780037915.01.T01:intron 35.0%
!! CTTACAAAACCGGCTTTTAA+AGG - Chr7:36325463-36325482 None:intergenic 35.0%
!! CTTTAAAAGCCGGTTTTGTA+AGG + Chr7:36325461-36325480 MsG0780037915.01.T01:three_prime_UTR 35.0%
!! GAAATTCTGGAATTTCTCAG+AGG + Chr7:36325225-36325244 MsG0780037915.01.T01:three_prime_UTR 35.0%
!! GTCGTTTGTTATATACCGAA+GGG + Chr7:36323320-36323339 MsG0780037915.01.T01:intron 35.0%
!! GTCTTTTATTTGTTTCCTGG+TGG + Chr7:36324821-36324840 MsG0780037915.01.T01:intron 35.0%
!! TGTTAAGGAGTATCCAGATT+TGG + Chr7:36323220-36323239 MsG0780037915.01.T01:CDS 35.0%
!!! ATTGTTTTGACAACTGTGGT+GGG + Chr7:36324563-36324582 MsG0780037915.01.T01:intron 35.0%
!!! CGTATTTTAGGATTAATGCG+TGG + Chr7:36323369-36323388 MsG0780037915.01.T01:intron 35.0%
!!! GAGTGTTGGTGAGTTTTATT+CGG + Chr7:36323715-36323734 MsG0780037915.01.T01:CDS 35.0%
!!! TATTGTTTTGACAACTGTGG+TGG + Chr7:36324562-36324581 MsG0780037915.01.T01:intron 35.0%
AATCATGAGCTTGAAGCTTG+AGG + Chr7:36325138-36325157 MsG0780037915.01.T01:three_prime_UTR 40.0%
AGCACTATCACCAATAAGCA+TGG - Chr7:36323921-36323940 None:intergenic 40.0%
AGTATTCGACTGTGCAGAAT+TGG + Chr7:36323538-36323557 MsG0780037915.01.T01:CDS 40.0%
ATCAGAAAGAATTGAGCACG+AGG + Chr7:36324970-36324989 MsG0780037915.01.T01:CDS 40.0%
ATCATGAGCTTGAAGCTTGA+GGG + Chr7:36325139-36325158 MsG0780037915.01.T01:three_prime_UTR 40.0%
ATCCGTGGTGTTTAGTTGAA+AGG + Chr7:36324282-36324301 MsG0780037915.01.T01:intron 40.0%
ATTGAGCATCCAATCAGGTT+CGG - Chr7:36322893-36322912 None:intergenic 40.0%
CAAAGAGAGTAGGATATCGA+AGG + Chr7:36323802-36323821 MsG0780037915.01.T01:intron 40.0%
CAATGAGCTTCCGATGAATT+TGG + Chr7:36325101-36325120 MsG0780037915.01.T01:exon 40.0%
CAGTGTGATTCCATGCTTAT+TGG + Chr7:36323908-36323927 MsG0780037915.01.T01:CDS 40.0%
CATTCGAGGAACTGTTATAG+AGG + Chr7:36323839-36323858 MsG0780037915.01.T01:intron 40.0%
CGAAAATTGAGCATCCAATC+AGG - Chr7:36322898-36322917 None:intergenic 40.0%
CGAATTTCTTGTCGTAATCG+CGG - Chr7:36322791-36322810 None:intergenic 40.0%
CGCGATTACGACAAGAAATT+CGG + Chr7:36322789-36322808 MsG0780037915.01.T01:CDS 40.0%
GAAAACGGGGTGATAAAATC+AGG - Chr7:36324745-36324764 None:intergenic 40.0%
GAAGCTCATTGAAGACATCA+CGG - Chr7:36325092-36325111 None:intergenic 40.0%
GAATCGTTTAGCGAATGTTG+CGG + Chr7:36323107-36323126 MsG0780037915.01.T01:CDS 40.0%
GCCAAAACTATCCCAACATT+TGG + Chr7:36324843-36324862 MsG0780037915.01.T01:intron 40.0%
GTAAGAAGTCGAAGATATCG+TGG + Chr7:36323627-36323646 MsG0780037915.01.T01:intron 40.0%
TCAAGCTTCAAGCTCATGAT+TGG - Chr7:36325139-36325158 None:intergenic 40.0%
TCATAGGAAGACACTTGAGA+AGG + Chr7:36323167-36323186 MsG0780037915.01.T01:CDS 40.0%
TCATGGACATGCATACTTCA+TGG + Chr7:36324108-36324127 MsG0780037915.01.T01:intron 40.0%
TCCAATAAGACACAGGTAAG+AGG - Chr7:36324248-36324267 None:intergenic 40.0%
TCCGTGGTGTTTAGTTGAAA+GGG + Chr7:36324283-36324302 MsG0780037915.01.T01:intron 40.0%
TCCTCTTACCTGTGTCTTAT+TGG + Chr7:36324244-36324263 MsG0780037915.01.T01:intron 40.0%
TCGTGCTCAATTCTTTCTGA+TGG - Chr7:36324971-36324990 None:intergenic 40.0%
TGCATACTTCATGGACACTT+TGG + Chr7:36324117-36324136 MsG0780037915.01.T01:intron 40.0%
TTAGGATTAATGCGTGGAGA+CGG + Chr7:36323375-36323394 MsG0780037915.01.T01:intron 40.0%
TTCGATTTCGGATGCTGTTA+AGG + Chr7:36323205-36323224 MsG0780037915.01.T01:CDS 40.0%
TTTGAATTAGCTCAGGCCAT+TGG + Chr7:36325197-36325216 MsG0780037915.01.T01:three_prime_UTR 40.0%
! AGTATGGTGGAGTATTTGGA+AGG + Chr7:36323436-36323455 MsG0780037915.01.T01:intron 40.0%
! ATTTGAGAGGACGTTGATTG+TGG + Chr7:36323402-36323421 MsG0780037915.01.T01:intron 40.0%
! CGGTTGTTGAGTTGTATTGT+GGG + Chr7:36323499-36323518 MsG0780037915.01.T01:CDS 40.0%
! GGTTGTTGAGTTGTATTGTG+GGG + Chr7:36323500-36323519 MsG0780037915.01.T01:CDS 40.0%
! GTATGGTGGAGTATTTGGAA+GGG + Chr7:36323437-36323456 MsG0780037915.01.T01:intron 40.0%
! TAGGAGTATGGTGGAGTATT+TGG + Chr7:36323432-36323451 MsG0780037915.01.T01:intron 40.0%
! TCCAATCAGGTTCGGATTTT+AGG - Chr7:36322885-36322904 None:intergenic 40.0%
! TCGAAGTATCTCAAAAGCTC+AGG - Chr7:36323060-36323079 None:intergenic 40.0%
!! AACTGTGGTGGGCAAATATA+CGG + Chr7:36324574-36324593 MsG0780037915.01.T01:intron 40.0%
!! ACAAAACCGGCTTTTAAAGG+TGG - Chr7:36325460-36325479 None:intergenic 40.0%
!! AGGAGTATCCAGATTTGGTT+AGG + Chr7:36323225-36323244 MsG0780037915.01.T01:intron 40.0%
!! ATATCGAAGGGTATTTCTGC+TGG + Chr7:36323815-36323834 MsG0780037915.01.T01:intron 40.0%
!! ATTCTGGAATTTCTCAGAGG+CGG + Chr7:36325228-36325247 MsG0780037915.01.T01:three_prime_UTR 40.0%
!! GCCATTGGTTCTTGAAATTC+TGG + Chr7:36325212-36325231 MsG0780037915.01.T01:three_prime_UTR 40.0%
!! GGTCGTTTGTTATATACCGA+AGG + Chr7:36323319-36323338 MsG0780037915.01.T01:intron 40.0%
!!! AATGCGGCTGTTTTTAGTGA+CGG + Chr7:36323297-36323316 MsG0780037915.01.T01:intron 40.0%
!!! GGCTATTGTTTTGACAACTG+TGG + Chr7:36324559-36324578 MsG0780037915.01.T01:intron 40.0%
ACTGTGCAGAATTGGTATGC+GGG + Chr7:36323546-36323565 MsG0780037915.01.T01:CDS 45.0%
AGACTGGGTCTGCAATTACT+TGG + Chr7:36323660-36323679 MsG0780037915.01.T01:CDS 45.0%
AGCACAACATGGTGAGAGAT+TGG + Chr7:36324538-36324557 MsG0780037915.01.T01:intron 45.0%
ATCGGACACTTAACACCCTT+CGG - Chr7:36323338-36323357 None:intergenic 45.0%
ATTTGCTTGTCCTGTATCCG+TGG + Chr7:36324267-36324286 MsG0780037915.01.T01:intron 45.0%
CAACTAAACACCACGGATAC+AGG - Chr7:36324280-36324299 None:intergenic 45.0%
CACCATGTTGTGCTTGTACT+AGG - Chr7:36324532-36324551 None:intergenic 45.0%
CCCCTTTCAACTAAACACCA+CGG - Chr7:36324287-36324306 None:intergenic 45.0%
CCGTGGTGTTTAGTTGAAAG+GGG + Chr7:36324284-36324303 MsG0780037915.01.T01:intron 45.0%
CGGTGTTCATGCATACTTCA+TGG + Chr7:36324091-36324110 MsG0780037915.01.T01:intron 45.0%
GACTGTGCAGAATTGGTATG+CGG + Chr7:36323545-36323564 MsG0780037915.01.T01:CDS 45.0%
GAGGCTAGTACGTCCAAAAT+TGG + Chr7:36324989-36325008 MsG0780037915.01.T01:CDS 45.0%
GCCTAAAATCCGAACCTGAT+TGG + Chr7:36322881-36322900 MsG0780037915.01.T01:CDS 45.0%
GGTATTCTTCGGCATACATG+TGG + Chr7:36324647-36324666 MsG0780037915.01.T01:intron 45.0%
GGTGATGAGAATGGAAAGGT+GGG + Chr7:36323567-36323586 MsG0780037915.01.T01:intron 45.0%
TAGGATTAATGCGTGGAGAC+GGG + Chr7:36323376-36323395 MsG0780037915.01.T01:intron 45.0%
TCATGAGCTTGAAGCTTGAG+GGG + Chr7:36325140-36325159 MsG0780037915.01.T01:three_prime_UTR 45.0%
TCTTGTCGTAATCGCGGTTA+CGG - Chr7:36322785-36322804 None:intergenic 45.0%
TGCCTAGTACAAGCACAACA+TGG + Chr7:36324527-36324546 MsG0780037915.01.T01:intron 45.0%
TTCATGGATTCTATGCGGCA+TGG - Chr7:36325334-36325353 None:intergenic 45.0%
! AGCTCATGATTGGTTCACCT+CGG - Chr7:36325129-36325148 None:intergenic 45.0%
! CATACATGTGGTCTAGTTCG+AGG + Chr7:36324659-36324678 MsG0780037915.01.T01:intron 45.0%
! CTGTTATAGAGGGCTTGTTC+AGG + Chr7:36323850-36323869 MsG0780037915.01.T01:intron 45.0%
! GCGGTTGTTGAGTTGTATTG+TGG + Chr7:36323498-36323517 MsG0780037915.01.T01:CDS 45.0%
! GCTTGTTCAGGTTCAGTCTA+AGG + Chr7:36323862-36323881 MsG0780037915.01.T01:intron 45.0%
! GGAGCTTTTTGATGCTGAGT+TGG + Chr7:36324717-36324736 MsG0780037915.01.T01:intron 45.0%
! GTATTTCTGCTGGACATTCG+AGG + Chr7:36323825-36323844 MsG0780037915.01.T01:intron 45.0%
! GTTGAGTTGTATTGTGGGGA+GGG + Chr7:36323504-36323523 MsG0780037915.01.T01:CDS 45.0%
! TGTTCAGGTTCAGTCTAAGG+CGG + Chr7:36323865-36323884 MsG0780037915.01.T01:intron 45.0%
! TGTTGAGTTGTATTGTGGGG+AGG + Chr7:36323503-36323522 MsG0780037915.01.T01:CDS 45.0%
!! GAAGTATCCGAGCGTTGTTT+TGG + Chr7:36323682-36323701 MsG0780037915.01.T01:CDS 45.0%
!!! ATGCGGCTGTTTTTAGTGAC+GGG + Chr7:36323298-36323317 MsG0780037915.01.T01:intron 45.0%
!!! TATCCGAGCGTTGTTTTGGA+GGG + Chr7:36323686-36323705 MsG0780037915.01.T01:CDS 45.0%
ACGAAGAGAGGATTGTGTGC+TGG + Chr7:36323605-36323624 MsG0780037915.01.T01:intron 50.0%
ACTGGGTGCAGTCTATGTTG+TGG + Chr7:36324888-36324907 MsG0780037915.01.T01:intron 50.0%
AGGAAGACACTTGAGAAGGC+TGG + Chr7:36323171-36323190 MsG0780037915.01.T01:CDS 50.0%
AGGATTAATGCGTGGAGACG+GGG + Chr7:36323377-36323396 MsG0780037915.01.T01:intron 50.0%
CACCTCGGAGCCAAATTCAT+CGG - Chr7:36325114-36325133 None:intergenic 50.0%
CGCGGTTACGGAGAATTTCA+CGG - Chr7:36322773-36322792 None:intergenic 50.0%
GAAGATATCGTGGACTCAGG+TGG + Chr7:36323637-36323656 MsG0780037915.01.T01:intron 50.0%
GATACCTCGGTAGCTTCACT+GGG + Chr7:36324871-36324890 MsG0780037915.01.T01:intron 50.0%
GCAATGGCTGCTATGATCTC+TGG + Chr7:36325061-36325080 MsG0780037915.01.T01:CDS 50.0%
GGGTGATGAGAATGGAAAGG+TGG + Chr7:36323566-36323585 MsG0780037915.01.T01:intron 50.0%
GTCGAAGATATCGTGGACTC+AGG + Chr7:36323634-36323653 MsG0780037915.01.T01:intron 50.0%
TCACCCTCCAAAACAACGCT+CGG - Chr7:36323692-36323711 None:intergenic 50.0%
TGATACCTCGGTAGCTTCAC+TGG + Chr7:36324870-36324889 MsG0780037915.01.T01:intron 50.0%
TGCGGGTGATGAGAATGGAA+AGG + Chr7:36323563-36323582 MsG0780037915.01.T01:CDS 50.0%
TGGTATGCGGGTGATGAGAA+TGG + Chr7:36323558-36323577 MsG0780037915.01.T01:CDS 50.0%
TTGAAGCTTGAGGGGTCAGT+CGG + Chr7:36325148-36325167 MsG0780037915.01.T01:three_prime_UTR 50.0%
! TGAGAGGACGTTGATTGTGG+CGG + Chr7:36323405-36323424 MsG0780037915.01.T01:intron 50.0%
! TTCCGATGAATTTGGCTCCG+AGG + Chr7:36325109-36325128 MsG0780037915.01.T01:exon 50.0%
! TTGGAGGGTGATGAGAGTGT+TGG + Chr7:36323701-36323720 MsG0780037915.01.T01:CDS 50.0%
!! CGTTGATTGTGGCGGATGAT+AGG + Chr7:36323413-36323432 MsG0780037915.01.T01:intron 50.0%
!! TGTGGCGGATGATAGGAGTA+TGG + Chr7:36323420-36323439 MsG0780037915.01.T01:intron 50.0%
!!! GTATCCGAGCGTTGTTTTGG+AGG + Chr7:36323685-36323704 MsG0780037915.01.T01:CDS 50.0%
!!! TTGGGATAGTTTTGGCCACC+AGG - Chr7:36324839-36324858 None:intergenic 50.0%
TGGAGACGGGGCAATTTGAG+AGG + Chr7:36323389-36323408 MsG0780037915.01.T01:intron 55.0%
! GGCAGGCCACCTTTAAAAGC+CGG + Chr7:36325451-36325470 MsG0780037915.01.T01:three_prime_UTR 55.0%
! GGCGGATGATAGGAGTATGG+TGG + Chr7:36323423-36323442 MsG0780037915.01.T01:intron 55.0%
CGTGGACTCAGGTGGAGACT+GGG + Chr7:36323645-36323664 MsG0780037915.01.T01:intron 60.0%
CTCAGAGGCGGTAGTGTGTC+TGG + Chr7:36325240-36325259 MsG0780037915.01.T01:three_prime_UTR 60.0%
TCGTGGACTCAGGTGGAGAC+TGG + Chr7:36323644-36323663 MsG0780037915.01.T01:intron 60.0%
TGCACCCAGTGAAGCTACCG+AGG - Chr7:36324878-36324897 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 36322760 36325547 36322760 ID=MsG0780037915.01;Name=MsG0780037915.01
Chr7 mRNA 36322760 36325547 36322760 ID=MsG0780037915.01.T01;Parent=MsG0780037915.01;Name=MsG0780037915.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0.2|0.16|1|1|1|6|430|294
Chr7 exon 36324959 36325547 36324959 ID=MsG0780037915.01.T01:exon:6143;Parent=MsG0780037915.01.T01
Chr7 exon 36323872 36323967 36323872 ID=MsG0780037915.01.T01:exon:6142;Parent=MsG0780037915.01.T01
Chr7 exon 36323656 36323736 36323656 ID=MsG0780037915.01.T01:exon:6141;Parent=MsG0780037915.01.T01
Chr7 exon 36323458 36323584 36323458 ID=MsG0780037915.01.T01:exon:6140;Parent=MsG0780037915.01.T01
Chr7 exon 36323022 36323241 36323022 ID=MsG0780037915.01.T01:exon:6139;Parent=MsG0780037915.01.T01
Chr7 exon 36322760 36322961 36322760 ID=MsG0780037915.01.T01:exon:6138;Parent=MsG0780037915.01.T01
Chr7 CDS 36322760 36322961 36322760 ID=MsG0780037915.01.T01:cds;Parent=MsG0780037915.01.T01
Chr7 CDS 36323022 36323241 36323022 ID=MsG0780037915.01.T01:cds;Parent=MsG0780037915.01.T01
Chr7 CDS 36323458 36323584 36323458 ID=MsG0780037915.01.T01:cds;Parent=MsG0780037915.01.T01
Chr7 CDS 36323656 36323736 36323656 ID=MsG0780037915.01.T01:cds;Parent=MsG0780037915.01.T01
Chr7 CDS 36323872 36323967 36323872 ID=MsG0780037915.01.T01:cds;Parent=MsG0780037915.01.T01
Chr7 CDS 36324959 36325117 36324959 ID=MsG0780037915.01.T01:cds;Parent=MsG0780037915.01.T01
Chr7 three_prime_UTR 36325118 36325547 36325118 ID=MsG0780037915.01.T01:three_prime_utr;Parent=MsG0780037915.01.T01
Gene Sequence

>MsG0780037915.01.T01

ATGACAAAATCCGTGAAATTCTCCGTAACCGCGATTACGACAAGAAATTCGGTTTCAACATCAATATCGATTCTTTCACAATTCCAAAAGGATTATCAACAGAAACCATTCGTTAATCTCAGCCTAAAATCCGAACCTGATTGGATGCTCAATTTTCGATTAAACGCGTTCGAGAAATTCGCGAAAATGAAAGAACCAATTGAAGAAACCCTCGATAATAGCTTAGAAGAAGCTGATCCTGAGCTTTTGAGATACTTCGATAAGCTCGGTGTACCGTTAAACGAACAGAATCGTTTAGCGAATGTTGCGGTAGATGCTGTTTTAGACAGTGTTTCTATTGCAACTACTCATAGGAAGACACTTGAGAAGGCTGGTGTTATATTTGTTCGATTTCGGATGCTGTTAAGGAGTATCCAGATTTGGGTGTACCGCACTTCTTATGATAAAAATCAGCTTCATGCTGCGGTTGTTGAGTTGTATTGTGGGGAGGGTGCAGAGATTAAGTATTCGACTGTGCAGAATTGGTATGCGGGTGATGAGAATGGAAAGGTGGAGACTGGGTCTGCAATTACTTGGAAGTATCCGAGCGTTGTTTTGGAGGGTGATGAGAGTGTTGGTGAGTTTTATTCGGTTCAGTCTAAGGCGGAGAATGCGAAAAACTCTTCTCAGTGTGATTCCATGCTTATTGGTGATAGTGCTGCTGCGAATACATATCCTTACATCCAGGTGAAGAATCCATCAGAAAGAATTGAGCACGAGGCTAGTACGTCCAAAATTGGTGAAGATCAGTTATTTTACTTTCAACAAAGAGGAATAGACTATGAAAAAGCAATGGCTGCTATGATCTCTGGATTTGCCGTGATGTCTTCAATGAGCTTCCGATGA

Protein sequence

>MsG0780037915.01.T01

MTKSVKFSVTAITTRNSVSTSISILSQFQKDYQQKPFVNLSLKSEPDWMLNFRLNAFEKFAKMKEPIEETLDNSLEEADPELLRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEKAGVIFVRFRMLLRSIQIWVYRTSYDKNQLHAAVVELYCGEGAEIKYSTVQNWYAGDENGKVETGSAITWKYPSVVLEGDESVGEFYSVQSKAENAKNSSQCDSMLIGDSAAANTYPYIQVKNPSERIEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFAVMSSMSFR*